Query 027367
Match_columns 224
No_of_seqs 121 out of 603
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 08:54:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2421 Predicted acetamidase/ 100.0 5.3E-54 1.1E-58 387.9 15.2 153 4-186 149-302 (305)
2 PF03069 FmdA_AmdA: Acetamidas 100.0 5.8E-49 1.3E-53 365.3 2.8 171 2-185 199-369 (369)
3 PF03069 FmdA_AmdA: Acetamidas 97.0 0.0016 3.4E-08 61.6 6.3 117 33-168 219-347 (369)
4 PF03861 ANTAR: ANTAR domain; 66.3 12 0.00027 25.7 4.1 30 126-155 9-39 (56)
5 TIGR02058 lin0512_fam conserve 64.3 10 0.00022 30.8 3.8 26 109-138 7-32 (116)
6 cd06154 YjgF_YER057c_UK114_lik 63.4 29 0.00064 27.0 6.3 48 104-151 21-69 (119)
7 PF09585 Lin0512_fam: Conserve 62.5 12 0.00025 30.4 3.8 26 109-138 7-32 (113)
8 cd02198 YjgH_like YjgH belongs 56.8 45 0.00097 25.6 6.2 45 104-149 11-56 (111)
9 cd06152 YjgF_YER057c_UK114_lik 47.6 70 0.0015 25.0 6.0 47 104-150 11-59 (114)
10 PRK11401 putative endoribonucl 44.2 81 0.0018 25.0 6.0 48 103-150 24-72 (129)
11 TIGR03505 FimV_core FimV N-ter 42.0 4.9 0.00011 29.9 -1.3 23 8-32 29-52 (74)
12 PF01042 Ribonuc_L-PSP: Endori 39.6 83 0.0018 24.3 5.3 46 103-148 18-65 (121)
13 cd06153 YjgF_YER057c_UK114_lik 35.3 1.5E+02 0.0033 23.1 6.2 53 103-155 12-70 (114)
14 cd06155 eu_AANH_C_1 A group of 33.3 1.5E+02 0.0032 22.4 5.7 44 103-150 7-50 (101)
15 PRK04151 IMP cyclohydrolase; P 32.4 1.5E+02 0.0032 26.3 6.2 89 81-191 44-141 (197)
16 TIGR01922 purO_arch IMP cycloh 31.7 1.4E+02 0.0031 26.4 6.0 89 81-191 44-141 (199)
17 cd04444 DEP_PLEK2 DEP (Disheve 30.6 32 0.0007 27.7 1.6 33 134-167 36-70 (109)
18 cd04442 DEP_1_DEP6 DEP (Dishev 28.8 62 0.0014 24.5 2.9 27 134-161 33-61 (82)
19 cd06150 YjgF_YER057c_UK114_lik 27.6 2.3E+02 0.0049 21.4 5.9 44 104-151 11-54 (105)
20 cd04441 DEP_2_DEP6 DEP (Dishev 26.5 68 0.0015 24.5 2.7 23 134-156 37-61 (85)
21 cd04447 DEP_BRCC3 DEP (Disheve 25.2 73 0.0016 25.0 2.7 23 134-156 34-65 (92)
22 PF01476 LysM: LysM domain; I 24.4 41 0.00088 21.1 1.0 16 15-30 29-44 (44)
23 smart00049 DEP Domain found in 24.1 96 0.0021 21.9 3.0 33 134-167 25-59 (77)
24 COG3707 AmiR Response regulato 23.7 1.3E+02 0.0027 26.7 4.2 32 128-159 143-175 (194)
25 COG1820 NagA N-acetylglucosami 23.0 89 0.0019 30.2 3.4 27 128-157 312-338 (380)
26 cd00448 YjgF_YER057c_UK114_fam 22.9 1.7E+02 0.0037 21.3 4.3 29 122-150 28-56 (107)
27 PF14748 P5CR_dimer: Pyrroline 22.2 95 0.0021 24.0 2.9 27 130-156 22-48 (107)
28 COG0251 TdcF Putative translat 21.7 3.4E+02 0.0073 21.7 6.1 52 104-155 27-80 (130)
29 PF05119 Terminase_4: Phage te 21.1 1.2E+02 0.0025 22.5 3.1 22 126-147 64-85 (100)
30 cd04443 DEP_GPR155 DEP (Dishev 20.1 1.2E+02 0.0025 22.9 2.9 23 134-156 35-59 (83)
No 1
>COG2421 Predicted acetamidase/formamidase [Energy production and conversion]
Probab=100.00 E-value=5.3e-54 Score=387.88 Aligned_cols=153 Identities=41% Similarity=0.629 Sum_probs=143.2
Q ss_pred cccCCCCCCcccccccCCCCCcEEEEeeeeCCeeeecCCccccCCCcccccccceeecceEEEEEEEEeCCcccccCCCC
Q 027367 4 ARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMG 83 (224)
Q Consensus 4 ~~Tipp~~~GGNmD~~~l~~GstlyLPV~V~GAlls~GD~HAaQGDGEV~~~gAiE~~~~vtlrv~viK~~~~~~~~p~~ 83 (224)
++|+|||+||||||+|+|++||||||||||+||+||+||.||+|||||||+| |||++|++||||+|+|+.. .+
T Consensus 149 l~t~~p~~~GGNlD~k~l~~GstvylPV~V~GAllsiGD~Ha~qGDGEV~~t-aiEv~~~vTv~~~l~K~~~----~~-- 221 (305)
T COG2421 149 LSTGPPREHGGNLDIKDLTEGSTVYLPVFVEGALLSIGDLHAAQGDGEVCGT-AIEVPAEVTVKVELIKNLN----LE-- 221 (305)
T ss_pred CCCCCCCccCCcCChhhccCCCEEEEEEEEcCceeeecchhhhccCCceEEE-EEEeccEEEEEEEEecCCc----cc--
Confidence 5899999999999999999999999999999999999999999999999998 8999999999999999964 24
Q ss_pred CCCCCCCCeeeeCCCCCCCCceEEEEecccCCCCCcccCCHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhcccccCceE
Q 027367 84 PTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSK-FGYSKEQVYLLLSCCPCEGRI 162 (224)
Q Consensus 84 ~~~~~~~P~~et~p~~p~~~~~~~~~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~-~gls~~dAY~L~S~a~~d~rI 162 (224)
||+++|+ ++|+++ |+.. |++.|+|+|+++||+||++ .||+++|||||||++ +|+||
T Consensus 222 ------~Pi~~t~------~~~~~~-g~~~---------~l~~A~k~a~~~~i~~l~~~~~~~~~~Ay~L~Sla-vd~rV 278 (305)
T COG2421 222 ------WPILETP------DYLITL-GSGE---------TLEKAAKQALKNMIDFLRRRNGLTREDAYMLASLA-VDLRV 278 (305)
T ss_pred ------CceEeCC------CeEEEE-eccc---------cHHHHHHHHHHHHHHHHHHhcCCCHHHhhheeeEE-EeeEE
Confidence 9999997 788886 7743 7899999999999999984 999999999999999 89999
Q ss_pred eeecCCCCeEEEEEeecccccccC
Q 027367 163 SGIVDSPNAVATLAVPTAIFDQDI 186 (224)
Q Consensus 163 sQvVd~p~~tv~~~iPk~if~~~~ 186 (224)
||+||+||+++++.+|+++|.+.+
T Consensus 279 sq~V~~~n~~v~~~lP~~~f~~~~ 302 (305)
T COG2421 279 SQLVDVPNKTVSALLPLDIFEELV 302 (305)
T ss_pred EEEecCCccEEEEEeehHHhhhcc
Confidence 999999999999999999998764
No 2
>PF03069 FmdA_AmdA: Acetamidase/Formamidase family; InterPro: IPR004304 This family includes amidohydrolases of formamide 3.5.1.49 from EC and acetamide 3.5.1 from EC. The formamidase from Methylophilus methylotrophus (Bacterium W3A1) forms a homotrimer suggesting that this may be a common property of other members of this family.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0008152 metabolic process; PDB: 3TKK_D 3B9T_D 2II1_C 2F4L_C 2WKN_C.
Probab=100.00 E-value=5.8e-49 Score=365.31 Aligned_cols=171 Identities=51% Similarity=0.821 Sum_probs=128.5
Q ss_pred CccccCCCCCCcccccccCCCCCcEEEEeeeeCCeeeecCCccccCCCcccccccceeecceEEEEEEEEeCCcccccCC
Q 027367 2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP 81 (224)
Q Consensus 2 ~~~~Tipp~~~GGNmD~~~l~~GstlyLPV~V~GAlls~GD~HAaQGDGEV~~~gAiE~~~~vtlrv~viK~~~~~~~~p 81 (224)
|+++|+||+.||||||+++|++||||||||||+|||||+||+||+|||||||+| |||+++++||||+|+|+... +|
T Consensus 199 ~~~~t~~p~~~gGn~D~~~~~~G~~~~lPV~v~Ga~~~~GD~Ha~qGdgEv~~~-aie~~~~~~~~~~v~k~~~~---~p 274 (369)
T PF03069_consen 199 EALSTVPPGEHGGNMDIKELTAGSTLYLPVFVPGALLSVGDLHAAQGDGEVCGT-AIETSGEVTLRVDVIKGGLE---WP 274 (369)
T ss_dssp H-BESSSEETTEEE---TTSSTTEEEEEE--STTEEEEEEEEESE--TBTTTSE-ECEE-EEEEEEEEEESSHCS---ST
T ss_pred cccccccCCCccccccchhhcCCCEEEEEEEECCcEEEecccccccCCcceeeE-eeccccEEEEEEEEEeCCcC---Cc
Confidence 578999999999999999999999999999999999999999999999999998 79999999999999998521 11
Q ss_pred CCCCCCCCCCeeeeCCCCCCCCceEEEEecccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccccCce
Q 027367 82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGR 161 (224)
Q Consensus 82 ~~~~~~~~~P~~et~p~~p~~~~~~~~~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~dAY~L~S~a~~d~r 161 (224)
...+|++.++++.+.+.+|++++|.+.++..++.+.|+..|++.|+++||+|+.++||++.+||+++|++ +|++
T Consensus 275 -----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~~~i~~~~~~~l~~~~a~~~~S~~-vd~~ 348 (369)
T PF03069_consen 275 -----RLETPIFDPGPIEPHFSEWIAVSGEDVDEALKQAVRDATEALRRALLNMIDYLDAYGLTSAQAYLLISQA-VDLR 348 (369)
T ss_dssp -----EEESSCEE--SESSEEE-EEEEEESSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEEEEEES-SSSC
T ss_pred -----cccCccccCCCccccchhhhhhcCcchhhhhhhhhHHHHHHHHHHHHhhhhHHHHcCCCHHHhheEcccc-ccCC
Confidence 1114555556666666688888888776555555666677777777777777766777777777777776 6777
Q ss_pred EeeecCCCCeEEEEEeeccccccc
Q 027367 162 ISGIVDSPNAVATLAVPTAIFDQD 185 (224)
Q Consensus 162 IsQvVd~p~~tv~~~iPk~if~~~ 185 (224)
+||.||++++++||++||.+|
T Consensus 349 ---~Vdvpn~~v~~~lP~~If~~~ 369 (369)
T PF03069_consen 349 ---IVDVPNYTVSARLPKDIFVED 369 (369)
T ss_dssp ---S-STT-EEEEEEEEGGGCSS-
T ss_pred ---eecccCcEEEEECChhhcccC
Confidence 899999999999999999875
No 3
>PF03069 FmdA_AmdA: Acetamidase/Formamidase family; InterPro: IPR004304 This family includes amidohydrolases of formamide 3.5.1.49 from EC and acetamide 3.5.1 from EC. The formamidase from Methylophilus methylotrophus (Bacterium W3A1) forms a homotrimer suggesting that this may be a common property of other members of this family.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0008152 metabolic process; PDB: 3TKK_D 3B9T_D 2II1_C 2F4L_C 2WKN_C.
Probab=96.97 E-value=0.0016 Score=61.61 Aligned_cols=117 Identities=23% Similarity=0.138 Sum_probs=73.1
Q ss_pred eCCeeeecC----CccccCCCcccccccceeecc---eEEEEEEEEeCCcccccCCCCCCCCCCCCeeeeCCCCCC-CCc
Q 027367 33 VDGANLSTG----DMHFSQGDGEVTFCGAIEMSG---FLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPR-FSE 104 (224)
Q Consensus 33 V~GAlls~G----D~HAaQGDGEV~~~gAiE~~~---~vtlrv~viK~~~~~~~~p~~~~~~~~~P~~et~p~~p~-~~~ 104 (224)
..|+-+|+- -.-++.||+=-+. |-=|+++ ++..++++.=. + .+. . ..+|++++.-..+. ...
T Consensus 219 ~~G~~~~lPV~v~Ga~~~~GD~Ha~q-GdgEv~~~aie~~~~~~~~~~----v-~k~---~-~~~p~~~~p~~~~~~~~~ 288 (369)
T PF03069_consen 219 TAGSTLYLPVFVPGALLSVGDLHAAQ-GDGEVCGTAIETSGEVTLRVD----V-IKG---G-LEWPRLETPIFDPGPIEP 288 (369)
T ss_dssp STTEEEEEE--STTEEEEEEEEESE---TBTTTSEECEE-EEEEEEEE----E-ESS---H-CSSTEEESSCEE--SESS
T ss_pred cCCCEEEEEEEECCcEEEeccccccc-CCcceeeEeeccccEEEEEEE----E-EeC---C-cCCccccCccccCCCccc
Confidence 445554442 2335667776554 3236554 45567766543 1 221 2 44899998422211 112
Q ss_pred eEE-EEecccCCCCCcccCCHHHHHHHHHHHHHHHHH-H--cCCCHHHHHHHhcccccCceEeeecCC
Q 027367 105 WLV-FEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-K--FGYSKEQVYLLLSCCPCEGRISGIVDS 168 (224)
Q Consensus 105 ~~~-~~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~-~--~gls~~dAY~L~S~a~~d~rIsQvVd~ 168 (224)
++. ..-+ ++ .++++|+++|+++|..+++ + .++++.++|+|.|.+ +++.+||+||.
T Consensus 289 ~~~~~~~~----~~----~~~~~a~~~~~~~~~~~~~~a~~~~i~~~~~~~l~~~~-a~~~~S~~vd~ 347 (369)
T PF03069_consen 289 HFSEWIAV----SG----EDVDEALKQAVRDATEALRRALLNMIDYLDAYGLTSAQ-AYLLISQAVDL 347 (369)
T ss_dssp EEE-EEEE----EE----SSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-HEEEEEESSSS
T ss_pred cchhhhhh----cC----cchhhhhhhhhHHHHHHHHHHHHhhhhHHHHcCCCHHH-hheEccccccC
Confidence 222 1111 12 4899999999999999997 4 799999999999998 89999999994
No 4
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=66.33 E-value=12 Score=25.71 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHH-HcCCCHHHHHHHhcc
Q 027367 126 VAYKRAVLNAIDYLS-KFGYSKEQVYLLLSC 155 (224)
Q Consensus 126 ~A~r~A~~~mi~~L~-~~gls~~dAY~L~S~ 155 (224)
..-+..+..+...|. ++|+|.++||.++--
T Consensus 9 l~~r~~I~~AkgiLm~~~g~~e~~A~~~Lr~ 39 (56)
T PF03861_consen 9 LESRRVIEQAKGILMARYGLSEDEAYRLLRR 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHT--HHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 456778899999997 699999999988743
No 5
>TIGR02058 lin0512_fam conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus.
Probab=64.30 E-value=10 Score=30.84 Aligned_cols=26 Identities=46% Similarity=0.514 Sum_probs=21.3
Q ss_pred EecccCCCCCcccCCHHHHHHHHHHHHHHH
Q 027367 109 EGISVDESGGQHYLDATVAYKRAVLNAIDY 138 (224)
Q Consensus 109 ~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~ 138 (224)
+|...|-.|. |.+.|+++|++++|..
T Consensus 7 mGmG~DlhGq----D~TkAA~RAvrDAI~h 32 (116)
T TIGR02058 7 MGMGVDQHGQ----NITKAAMRAVRNAIAS 32 (116)
T ss_pred ecccccccCc----cHHHHHHHHHHHHHhh
Confidence 4777775554 9999999999999985
No 6
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=63.42 E-value=29 Score=27.00 Aligned_cols=48 Identities=23% Similarity=0.190 Sum_probs=33.8
Q ss_pred ceEEEEec-ccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 027367 104 EWLVFEGI-SVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYL 151 (224)
Q Consensus 104 ~~~~~~G~-~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~dAY~ 151 (224)
.++.++|- ..|..+.....|+++.++++++|+...|++.|.+.++...
T Consensus 21 ~~l~vSGq~~~d~~~~~~~~d~~~Q~~~~~~ni~~~L~~aG~~~~dVvk 69 (119)
T cd06154 21 NWVFVSGTTGYDYDGMVMPGDAYEQTRQCLEIIEAALAEAGASLEDVVR 69 (119)
T ss_pred CEEEEeCcCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 56666552 2222232334589999999999999999999988876543
No 7
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=62.48 E-value=12 Score=30.39 Aligned_cols=26 Identities=42% Similarity=0.381 Sum_probs=21.2
Q ss_pred EecccCCCCCcccCCHHHHHHHHHHHHHHH
Q 027367 109 EGISVDESGGQHYLDATVAYKRAVLNAIDY 138 (224)
Q Consensus 109 ~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~ 138 (224)
+|+..|-.|. |.+.|..+|++++|.+
T Consensus 7 ~GmG~DlhGq----D~TkAA~RAv~DAI~~ 32 (113)
T PF09585_consen 7 MGMGNDLHGQ----DYTKAAVRAVRDAISH 32 (113)
T ss_pred ecccccccCC----cHHHHHHHHHHHHHhh
Confidence 4777765554 9999999999999986
No 8
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=56.82 E-value=45 Score=25.58 Aligned_cols=45 Identities=24% Similarity=0.237 Sum_probs=32.3
Q ss_pred ceEEEEec-ccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 027367 104 EWLVFEGI-SVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQV 149 (224)
Q Consensus 104 ~~~~~~G~-~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~dA 149 (224)
.|+.++|- ..|..|. ...|+.+.+++++.|+...|++.|.+.++.
T Consensus 11 ~~l~vSGq~~~d~~g~-~~~d~~~Q~~~~~~ni~~~L~~aG~~~~dv 56 (111)
T cd02198 11 DTLFVSGQVGSDADGS-VAEDFEAQFRLAFQNLGAVLEAAGCSFDDV 56 (111)
T ss_pred CEEEEecccCcCCCCC-cCCCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 46666552 2333333 235899999999999999999899998754
No 9
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=47.64 E-value=70 Score=25.02 Aligned_cols=47 Identities=26% Similarity=0.167 Sum_probs=33.5
Q ss_pred ceEEEEe-cccCCCCCcccCCHHHHHHHHHHHHHHHHHHcC-CCHHHHH
Q 027367 104 EWLVFEG-ISVDESGGQHYLDATVAYKRAVLNAIDYLSKFG-YSKEQVY 150 (224)
Q Consensus 104 ~~~~~~G-~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~g-ls~~dAY 150 (224)
.|+.++| ...|.+|.....|+++=++++++|+-..|++.| .++++..
T Consensus 11 ~~v~~SGq~g~d~~g~~~~~d~~~Q~~~~~~Nl~~~L~~aG~~~~~dVv 59 (114)
T cd06152 11 DRIEISGQGGWDPDTGKIPEDLEEEIDQAFDNVELALKAAGGKGWEQVY 59 (114)
T ss_pred CEEEEeccCCcCCCCCccCcCHHHHHHHHHHHHHHHHHHhCCCCHHHEE
Confidence 4666655 333333322235899999999999999999888 8888763
No 10
>PRK11401 putative endoribonuclease L-PSP; Provisional
Probab=44.18 E-value=81 Score=24.96 Aligned_cols=48 Identities=15% Similarity=0.098 Sum_probs=32.5
Q ss_pred CceEEEEec-ccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 027367 103 SEWLVFEGI-SVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVY 150 (224)
Q Consensus 103 ~~~~~~~G~-~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~dAY 150 (224)
..|+.++|- ..|..+....-|+++.++++++|+...|++.|.+.++..
T Consensus 24 g~~v~vSGq~~~d~~~~~~~~d~~~Q~~~~~~ni~~~L~aaG~~~~~Vv 72 (129)
T PRK11401 24 GSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAIVVAAGLSVGDII 72 (129)
T ss_pred CCEEEEcCcCCccCCCCccCcCHHHHHHHHHHHHHHHHHHcCCCHHHEE
Confidence 356666542 122212111248999999999999999988898887653
No 11
>TIGR03505 FimV_core FimV N-terminal domain. This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.
Probab=42.01 E-value=4.9 Score=29.89 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=17.8
Q ss_pred CCCC-CcccccccCCCCCcEEEEeee
Q 027367 8 PGRE-NGGNCDIKNLSRGSKIYLPVF 32 (224)
Q Consensus 8 pp~~-~GGNmD~~~l~~GstlyLPV~ 32 (224)
-|+. .+||+ +.|.+|++|.+|..
T Consensus 29 Np~AF~~~ni--n~L~~G~~L~iP~~ 52 (74)
T TIGR03505 29 NPDAFIGGNI--NRLKVGQILRIPSE 52 (74)
T ss_pred CHHhHhcCCh--hhcCCCCEEeCCCH
Confidence 3444 47888 68999999999964
No 12
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=39.59 E-value=83 Score=24.34 Aligned_cols=46 Identities=20% Similarity=0.132 Sum_probs=32.1
Q ss_pred CceEEEEeccc-C-CCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027367 103 SEWLVFEGISV-D-ESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (224)
Q Consensus 103 ~~~~~~~G~~~-d-~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~d 148 (224)
++|+.++|.-. | +.|.....|+++-++.+++|+-+.|++.|.+..+
T Consensus 18 g~~v~isGq~~~d~~~~~~~~~~~~~Q~~~~l~ni~~~L~~~G~~~~d 65 (121)
T PF01042_consen 18 GDTVFISGQVGIDPATGQVVPGDIEEQTRQALDNIERILAAAGASLDD 65 (121)
T ss_dssp TTEEEEEEEESBCTTTSSBSSSSHHHHHHHHHHHHHHHHHHTTS-GGG
T ss_pred CCEEEEeeeCCcCCCCCcCCCCCHHHHHHHHHHhhhhhhhcCCCccee
Confidence 46777665322 2 1232224689999999999999999999988776
No 13
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=35.29 E-value=1.5e+02 Score=23.10 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=35.1
Q ss_pred CceEEEEecc-cCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHhcc
Q 027367 103 SEWLVFEGIS-VDESGGQHYLDATVAYKRAVLNAIDYLSKFGYS-----KEQVYLLLSC 155 (224)
Q Consensus 103 ~~~~~~~G~~-~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls-----~~dAY~L~S~ 155 (224)
..|+.++|-. .|..|.....|+++-++++++|+-..|++.|++ .++...+-..
T Consensus 12 g~~v~vSGq~~~d~~g~~~~~d~~~Q~~~~l~ni~~~L~~aG~~~~~~~~~dVvk~~vy 70 (114)
T cd06153 12 RTHLFISGTASIVGHGTVHPGDVEAQTRETLENIEALLEAAGRGGGAQFLADLLRLKVY 70 (114)
T ss_pred CcEEEEEeECcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCccchhheeEEEEE
Confidence 3466665421 222333334589999999999999999999988 6665444333
No 14
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=33.28 E-value=1.5e+02 Score=22.36 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=32.1
Q ss_pred CceEEEEecccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 027367 103 SEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVY 150 (224)
Q Consensus 103 ~~~~~~~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~dAY 150 (224)
..|+.++|..-.. ...|+++-+++++.|+-..|++.|++.++..
T Consensus 7 g~~v~vSG~~~~~----~~~d~~~Q~~~v~~ni~~~L~~aG~~~~dVv 50 (101)
T cd06155 7 GGLLWISNVTASE----SDETVEEQMESIFSKLREILQSNGLSLSDIL 50 (101)
T ss_pred CCEEEEecCCCCC----CCCCHHHHHHHHHHHHHHHHHHcCCCHHHEE
Confidence 4666665543211 1237889999999999999999999988753
No 15
>PRK04151 IMP cyclohydrolase; Provisional
Probab=32.42 E-value=1.5e+02 Score=26.28 Aligned_cols=89 Identities=17% Similarity=0.201 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCeeeeCCCCCCCCceEEE-EecccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccccC
Q 027367 81 PMGPTPLHVNPIFEIGPVEPRFSEWLVF-EGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCE 159 (224)
Q Consensus 81 p~~~~~~~~~P~~et~p~~p~~~~~~~~-~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~dAY~L~S~a~~d 159 (224)
|.-++++.+.|++.-.+++-- +++.++ -|-++| .+-+. -+.|++++||..+.=.+ .|
T Consensus 44 p~d~~~l~dnpyI~Y~~vRv~-g~~~VVtNG~qTD--------tI~e~------------l~~g~~~rdALa~sL~a-~d 101 (197)
T PRK04151 44 PKDDAEETKNPYISYNCVRIV-DDTAVVTNGSHTD--------PIAEK------------LELGYPARDALAYSLLA-MD 101 (197)
T ss_pred eCChhhccCCCceEEeeEEEe-CCeEEEcCCCcch--------HHHHH------------HHcCCCHHHHHHhhhhh-hh
Confidence 444566667788766655433 334443 254443 11111 14699999987333232 35
Q ss_pred c--------eEeeecCCCCeEEEEEeecccccccCCCCCC
Q 027367 160 G--------RISGIVDSPNAVATLAVPTAIFDQDIRPKSS 191 (224)
Q Consensus 160 ~--------rIsQvVd~p~~tv~~~iPk~if~~~~~~~~~ 191 (224)
+ ||+.|++.-++.++..=.-++.-+.+.|+.|
T Consensus 102 yE~D~~nTPRIsgiv~~~~~~lgivk~~~~~~~~~~~~~G 141 (197)
T PRK04151 102 YEKDDYNTPRIAGVVGKDEAYIGIVRKDALRVRKVELEDG 141 (197)
T ss_pred cCCCCCCCCcEEEEEcCCcEEEEEEEecCcceeeccCCCC
Confidence 5 7999999655444433333444444555443
No 16
>TIGR01922 purO_arch IMP cyclohydrolase. This model represents IMP cyclohydrolase, the final step in the biosynthesis of inosine monophosphate (IMP) in archaea. In bacteria this step is catalyzed by a bifunctional enzyme (purH).
Probab=31.68 E-value=1.4e+02 Score=26.42 Aligned_cols=89 Identities=18% Similarity=0.279 Sum_probs=49.8
Q ss_pred CCCCCCCCCCCeeeeCCCCCCCCceEEE-EecccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccccC
Q 027367 81 PMGPTPLHVNPIFEIGPVEPRFSEWLVF-EGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCE 159 (224)
Q Consensus 81 p~~~~~~~~~P~~et~p~~p~~~~~~~~-~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~dAY~L~S~a~~d 159 (224)
|.-++++.+.|++.-.+++-- +.+.++ -|-++| .+-+. -+.|+++.||..+.=+| .|
T Consensus 44 p~d~~~~~dnpyI~Yn~vR~~-~~~~VVtNG~qTD--------~I~e~------------l~~G~~~rdAL~~~Lla-~d 101 (199)
T TIGR01922 44 PEDPSEITENPYVTYNCIRIV-DETAVVSNGSHTD--------PIADK------------LESGVPPRDALVSVLLA-MD 101 (199)
T ss_pred eCChhhccCCCceEEeeEEEe-CCeEEEcCCCcch--------HHHHH------------HHcCCCHHHHHhhhhhh-cc
Confidence 444566666787766655432 334443 254443 11111 14699999998875554 56
Q ss_pred c--------eEeeecCCCCeEEEEEeecccccccCCCCCC
Q 027367 160 G--------RISGIVDSPNAVATLAVPTAIFDQDIRPKSS 191 (224)
Q Consensus 160 ~--------rIsQvVd~p~~tv~~~iPk~if~~~~~~~~~ 191 (224)
+ ||+.|++.-...++..=.-+++-+.+.|+.|
T Consensus 102 yE~D~~nTPRIsgvv~~~~~~lgivk~~~~~~~~~~~~~G 141 (199)
T TIGR01922 102 YEKDEYNTPRIAAILDGETAYLGIVAADEVYVRVVKPKDG 141 (199)
T ss_pred cCCCCCCCCcEEEEEcCCcEEEEEEeecceEEEeccCCCC
Confidence 5 7999999433333333233455556677654
No 17
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=30.64 E-value=32 Score=27.68 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=26.2
Q ss_pred HHHHHHH-H-cCCCHHHHHHHhcccccCceEeeecC
Q 027367 134 NAIDYLS-K-FGYSKEQVYLLLSCCPCEGRISGIVD 167 (224)
Q Consensus 134 ~mi~~L~-~-~gls~~dAY~L~S~a~~d~rIsQvVd 167 (224)
++++||. . .-++|.||.++++.- .|-.+=|-|.
T Consensus 36 e~VDWLv~~~~~i~R~EAv~l~q~L-md~gli~hV~ 70 (109)
T cd04444 36 ALVDWLISNSFAASRLEAVTLASML-MEENFLRPVG 70 (109)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH-HhCCchhhHH
Confidence 5889996 3 788999999999996 6766666554
No 18
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=28.82 E-value=62 Score=24.47 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=20.2
Q ss_pred HHHHHHHHc--CCCHHHHHHHhcccccCce
Q 027367 134 NAIDYLSKF--GYSKEQVYLLLSCCPCEGR 161 (224)
Q Consensus 134 ~mi~~L~~~--gls~~dAY~L~S~a~~d~r 161 (224)
+|++||.+. ..+++||-.++..- .+-.
T Consensus 33 elVdWL~~~~~~~sR~eAv~lgq~L-l~~g 61 (82)
T cd04442 33 ELIDWLIEHKEASDRETAIKIMQKL-LDHS 61 (82)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH-HHCC
Confidence 589999754 36899999999864 3433
No 19
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=27.56 E-value=2.3e+02 Score=21.36 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=32.0
Q ss_pred ceEEEEecccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 027367 104 EWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYL 151 (224)
Q Consensus 104 ~~~~~~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~dAY~ 151 (224)
.|+.++|-.-... .-|+++-++++++|.-..|++.|++.++...
T Consensus 11 ~~v~iSGq~~~~~----~~~~~~Q~~~~~~nl~~~L~~~G~~~~dvvk 54 (105)
T cd06150 11 GTVYLAGQVADDT----SADITGQTRQVLAKIDALLAEAGSDKSRILS 54 (105)
T ss_pred CEEEEeCcCCcCC----CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 5666655321111 1389999999999999999999999987643
No 20
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=26.45 E-value=68 Score=24.50 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=19.0
Q ss_pred HHHHHHHHcC--CCHHHHHHHhccc
Q 027367 134 NAIDYLSKFG--YSKEQVYLLLSCC 156 (224)
Q Consensus 134 ~mi~~L~~~g--ls~~dAY~L~S~a 156 (224)
++++||.+.| -+++||-.++..-
T Consensus 37 ElVdWL~~~~~~~sR~eAv~lgq~L 61 (85)
T cd04441 37 EFIDWLLQEGEAESRREAVQLCRRL 61 (85)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 5899998655 4999999999864
No 21
>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins. BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.
Probab=25.22 E-value=73 Score=24.95 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=18.6
Q ss_pred HHHHHHHHc---------CCCHHHHHHHhccc
Q 027367 134 NAIDYLSKF---------GYSKEQVYLLLSCC 156 (224)
Q Consensus 134 ~mi~~L~~~---------gls~~dAY~L~S~a 156 (224)
+|++||.++ .+|+.+|..||..-
T Consensus 34 EAVDwL~~~l~~n~~fg~~vtR~~av~l~qkl 65 (92)
T cd04447 34 EAVDWLHELLRSNSNFGPEVTRQQTVQLLKKF 65 (92)
T ss_pred HHHHHHHHHHHhccccCCCCCHHHHHHHHHHH
Confidence 578888753 89999999998764
No 22
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=24.41 E-value=41 Score=21.07 Aligned_cols=16 Identities=44% Similarity=0.748 Sum_probs=13.7
Q ss_pred cccccCCCCCcEEEEe
Q 027367 15 NCDIKNLSRGSKIYLP 30 (224)
Q Consensus 15 NmD~~~l~~GstlyLP 30 (224)
++++..|.+|.+|.+|
T Consensus 29 ~~~~~~l~~G~~l~iP 44 (44)
T PF01476_consen 29 NIDSDNLQPGQKLCIP 44 (44)
T ss_dssp TTHGGCGGTTEEEEEC
T ss_pred CCCcccCCCCCEEEeC
Confidence 5677779999999998
No 23
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=24.05 E-value=96 Score=21.91 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=23.9
Q ss_pred HHHHHHHHc--CCCHHHHHHHhcccccCceEeeecC
Q 027367 134 NAIDYLSKF--GYSKEQVYLLLSCCPCEGRISGIVD 167 (224)
Q Consensus 134 ~mi~~L~~~--gls~~dAY~L~S~a~~d~rIsQvVd 167 (224)
++++||.+. -.+++||..++..- .+.++=+-|+
T Consensus 25 e~v~wL~~~~~~~~r~eA~~l~~~l-l~~g~i~~v~ 59 (77)
T smart00049 25 ELVDWLMDNLEIIDREEAVHLGQLL-LDEGLIHHVN 59 (77)
T ss_pred HHHHHHHHcCCcCCHHHHHHHHHHH-HHCCCEEEeC
Confidence 589999853 35999999999875 5655544444
No 24
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=23.66 E-value=1.3e+02 Score=26.67 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHH-HcCCCHHHHHHHhcccccC
Q 027367 128 YKRAVLNAIDYLS-KFGYSKEQVYLLLSCCPCE 159 (224)
Q Consensus 128 ~r~A~~~mi~~L~-~~gls~~dAY~L~S~a~~d 159 (224)
-|.-+..+=..|. ++|+|.+|||.++.-.++|
T Consensus 143 ~rK~ierAKglLM~~~g~sE~EAy~~lR~~AM~ 175 (194)
T COG3707 143 ERKVIERAKGLLMKRRGLSEEEAYKLLRRTAMD 175 (194)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 3444555666776 6999999999999765444
No 25
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=22.97 E-value=89 Score=30.22 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhcccc
Q 027367 128 YKRAVLNAIDYLSKFGYSKEQVYLLLSCCP 157 (224)
Q Consensus 128 ~r~A~~~mi~~L~~~gls~~dAY~L~S~a~ 157 (224)
+..|+||+++|. +++.+||.++.|..+
T Consensus 312 m~~avrn~v~~~---~~~~~eAv~maS~~P 338 (380)
T COG1820 312 MDEAVRNLVEWG---GISLAEAVRMASLNP 338 (380)
T ss_pred HHHHHHHHHHHh---CCCHHHHHHHhhhhH
Confidence 446688899998 999999999999864
No 26
>cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=22.89 E-value=1.7e+02 Score=21.27 Aligned_cols=29 Identities=24% Similarity=0.135 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 027367 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVY 150 (224)
Q Consensus 122 ldl~~A~r~A~~~mi~~L~~~gls~~dAY 150 (224)
.|+++.++.+++|+-+.|++.|.+.++..
T Consensus 28 ~~~~~Q~~~~~~ni~~~L~~~g~~~~~iv 56 (107)
T cd00448 28 GDIEAQTRQALENLEAVLEAAGGSLDDVV 56 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEE
Confidence 48999999999999999998898866643
No 27
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=22.23 E-value=95 Score=24.02 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhccc
Q 027367 130 RAVLNAIDYLSKFGYSKEQVYLLLSCC 156 (224)
Q Consensus 130 ~A~~~mi~~L~~~gls~~dAY~L~S~a 156 (224)
.-+..|++|..+.||++++|..+....
T Consensus 22 ~~~eal~~a~v~~Gl~~~~A~~lv~~t 48 (107)
T PF14748_consen 22 LFIEALADAAVAQGLPREEARKLVAQT 48 (107)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 456778888888999999999887664
No 28
>COG0251 TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]
Probab=21.68 E-value=3.4e+02 Score=21.71 Aligned_cols=52 Identities=19% Similarity=0.202 Sum_probs=34.1
Q ss_pred ceEEEEe-cccCCCCCccc-CCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcc
Q 027367 104 EWLVFEG-ISVDESGGQHY-LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSC 155 (224)
Q Consensus 104 ~~~~~~G-~~~d~~g~~~~-ldl~~A~r~A~~~mi~~L~~~gls~~dAY~L~S~ 155 (224)
.++.++| +..+..|+... .|+++.+|+++.|.-..|++.|.+.++...+-..
T Consensus 27 ~~vfvSGQi~~~~~g~~v~~~d~~~Q~~~~l~ni~a~L~~aG~~~~~Vvk~~v~ 80 (130)
T COG0251 27 GLVFVSGQIPLDPTGELVGGEDIEAQTRQALANIKAVLEAAGSTLDDVVKVTVF 80 (130)
T ss_pred CEEEEeCcCCcCCCCcccCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 4555554 33332334333 3899999999999999999888777665444333
No 29
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=21.10 E-value=1.2e+02 Score=22.45 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCHH
Q 027367 126 VAYKRAVLNAIDYLSKFGYSKE 147 (224)
Q Consensus 126 ~A~r~A~~~mi~~L~~~gls~~ 147 (224)
...+.+.++|..++.++|||+.
T Consensus 64 ~~~~~~~~~~~~l~~~lGLtP~ 85 (100)
T PF05119_consen 64 SILNKAMKQMRSLASELGLTPA 85 (100)
T ss_pred HHHHHHHHHHHHHHHHcCCCHH
Confidence 4788899999999999999985
No 30
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=20.14 E-value=1.2e+02 Score=22.93 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=18.5
Q ss_pred HHHHHHHHc--CCCHHHHHHHhccc
Q 027367 134 NAIDYLSKF--GYSKEQVYLLLSCC 156 (224)
Q Consensus 134 ~mi~~L~~~--gls~~dAY~L~S~a 156 (224)
++|+||.+. --+++||..|.+.-
T Consensus 35 elVdWL~~~~~~~sR~eAv~lg~~L 59 (83)
T cd04443 35 DLVSWLIEVGLAQDRGEAVLYGRRL 59 (83)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 589999754 46999999998854
Done!