Query 027367
Match_columns 224
No_of_seqs 121 out of 603
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 14:38:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wkn_A Formamidase, gamma-lact 100.0 8.1E-64 2.8E-68 468.3 18.1 184 2-193 210-393 (409)
2 2ii1_A Acetamidase; 10172637, 100.0 1E-57 3.6E-62 412.8 14.9 152 2-184 142-294 (301)
3 2f4l_A Acetamidase, putative; 100.0 1.9E-57 6.4E-62 410.6 15.0 151 2-184 145-296 (297)
4 3mjj_A Predicted acetamidase/f 100.0 2.8E-57 9.6E-62 410.0 13.7 152 2-184 144-296 (301)
5 3b9t_A Twin-arginine transloca 100.0 7.2E-55 2.5E-59 414.7 16.8 169 2-184 302-481 (484)
6 3c8l_A FTSZ-like protein of un 60.4 8.6 0.0003 30.4 3.9 26 109-138 11-36 (122)
7 2cvl_A TTHA0137, protein trans 44.9 41 0.0014 25.2 5.5 45 104-148 24-69 (124)
8 1jd1_A Hypothetical 13.9 kDa p 42.3 46 0.0016 25.2 5.5 44 104-147 28-72 (129)
9 2dyy_A UPF0076 protein PH0854; 42.0 50 0.0017 24.8 5.6 45 104-148 25-71 (126)
10 1qd9_A Purine regulatory prote 40.0 45 0.0015 25.1 5.0 45 104-148 24-69 (124)
11 2b33_A Protein synthesis inhib 36.8 62 0.0021 25.1 5.5 45 104-148 37-83 (140)
12 1x25_A Hypothetical UPF0076 pr 32.8 55 0.0019 24.7 4.5 45 104-148 27-73 (128)
13 3quw_A Protein MMF1; chorismat 32.2 78 0.0027 25.1 5.5 45 104-148 52-97 (153)
14 3r0p_A L-PSP putative endoribo 31.3 89 0.003 23.4 5.4 46 103-148 26-73 (127)
15 1qah_A Perchloric acid soluble 30.2 96 0.0033 23.6 5.5 45 104-148 28-74 (136)
16 3l7q_A Putative translation in 29.2 98 0.0034 23.1 5.4 45 104-148 24-70 (125)
17 1xrg_A Putative translation in 27.4 91 0.0031 24.7 5.1 45 104-148 56-102 (156)
18 3k0t_A Endoribonuclease L-PSP, 26.9 1.1E+02 0.0038 23.7 5.4 45 103-148 42-88 (143)
19 3k12_A Uncharacterized protein 24.5 1.2E+02 0.0042 22.7 5.1 40 104-148 19-59 (122)
20 2cwj_A Putative endonuclease; 24.5 64 0.0022 24.1 3.5 45 104-148 19-65 (123)
21 1pf5_A Hypothetical protein YJ 23.2 1.3E+02 0.0044 22.6 5.1 43 104-147 29-72 (131)
22 3m1x_A Putative endoribonuclea 22.8 1E+02 0.0035 24.1 4.5 45 104-148 48-94 (148)
23 1ufm_A COP9 complex subunit 4; 22.4 51 0.0017 23.7 2.4 40 136-175 33-73 (84)
24 3vcz_A Endoribonuclease L-PSP; 20.7 1.3E+02 0.0044 23.6 4.8 45 103-147 48-93 (153)
No 1
>2wkn_A Formamidase, gamma-lactamase; hydrolase, biocatalysis; 2.08A {Delftia acidovorans}
Probab=100.00 E-value=8.1e-64 Score=468.32 Aligned_cols=184 Identities=62% Similarity=1.107 Sum_probs=172.1
Q ss_pred CccccCCCCCCcccccccCCCCCcEEEEeeeeCCeeeecCCccccCCCcccccccceeecceEEEEEEEEeCCcccccCC
Q 027367 2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP 81 (224)
Q Consensus 2 ~~~~Tipp~~~GGNmD~~~l~~GstlyLPV~V~GAlls~GD~HAaQGDGEV~~~gAiE~~~~vtlrv~viK~~~~~~~~p 81 (224)
|++||+|||+||||||||+|++||||||||||+|||||+||+||+|||||||+|||||+++++||||+|+|+++.++.++
T Consensus 210 e~~~TvpP~~hGGNmDik~l~~GstlYLPV~V~GAlfsvGD~HaaQGDGEI~~cgAiE~s~~vtl~v~viK~~~~~~~l~ 289 (409)
T 2wkn_A 210 EGARTVPPREHGGNCDIKDLSRGSRVFFPVYVDGAGLSVGDLHFSQGDGEITFCGAIEMAGWVHMKVSLIKGGMAKYGIK 289 (409)
T ss_dssp HCBCSSSEETTEESCCCTTSCTTCEEEEECCSTTEEEEEEEEESCCCTBCTTEEEEEECCEEEEEEEEEETTHHHHTTCS
T ss_pred ccccccCCCCccccccchhccCCcEEEEEEEecCceEeccCchhccCCCccccceeeecceEEEEEEEEEcCcccccCCC
Confidence 57899999999999999999999999999999999999999999999999999989999999999999999965433334
Q ss_pred CCCCCCCCCCeeeeCCCCCCCCceEEEEecccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccccCce
Q 027367 82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGR 161 (224)
Q Consensus 82 ~~~~~~~~~P~~et~p~~p~~~~~~~~~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~dAY~L~S~a~~d~r 161 (224)
+|++|+++++|++++|++++|++.|++|+|+|||+++|+|+|+++||+||+++|||++|||+|||+|++|+|
T Consensus 290 --------~P~~e~~~~~p~~~~~li~~G~~~d~~g~~~~ld~~~A~r~A~~~~i~~L~~~Gls~~eAy~LlS~a~~d~r 361 (409)
T 2wkn_A 290 --------NPIFKPSPMTPNYKDYLIFEGISVDEKGKQHYLDVTVAYRQACLNAIEYLKKFGYSGAQAYSLLGTAPVQGH 361 (409)
T ss_dssp --------SCEEECCSCCBCCCCEEEEEEESBCTTCCBCSSCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHSCCEEE
T ss_pred --------CCeecCCCCCCccCcEEEEEeeccccccccccccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCccccccE
Confidence 899999988888889988789999999999999999999999999999999999999999999999757999
Q ss_pred EeeecCCCCeEEEEEeecccccccCCCCCCCC
Q 027367 162 ISGIVDSPNAVATLAVPTAIFDQDIRPKSSKV 193 (224)
Q Consensus 162 IsQvVd~p~~tv~~~iPk~if~~~~~~~~~~~ 193 (224)
||||||.||+++++.|||+||+.++||++.++
T Consensus 362 IsqVVD~pn~~v~~~lP~~if~~~~~p~~~~~ 393 (409)
T 2wkn_A 362 ISGVVDVPNACATLWLPTEIFDFDINPTAEGP 393 (409)
T ss_dssp EEESCSTTCCEEEEEEEGGGBSSCCSCCTTCC
T ss_pred eccEecCCCcEEEEEeEHHHcccccCCCCCCC
Confidence 99999999999999999999999999985444
No 2
>2ii1_A Acetamidase; 10172637, structural genomics, joint center for structural genomics, PSI-2, protein structure initiative, J hydrolase; 1.95A {Bacillus halodurans}
Probab=100.00 E-value=1e-57 Score=412.85 Aligned_cols=152 Identities=30% Similarity=0.507 Sum_probs=142.4
Q ss_pred CccccCCCCCCcccccccCCCCCcEEEEeeeeCCeeeecCCccccCCCcccccccceeecceEEEEEEEEeCCcccccCC
Q 027367 2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP 81 (224)
Q Consensus 2 ~~~~Tipp~~~GGNmD~~~l~~GstlyLPV~V~GAlls~GD~HAaQGDGEV~~~gAiE~~~~vtlrv~viK~~~~~~~~p 81 (224)
|+++|+||++||||||+|+|++||||||||||+|||||+||+||+|||||||+| |||+++++||||+|+|+.. ++
T Consensus 142 ~~~~t~pP~~~GGNmD~~~l~~GstlylPV~v~GAl~s~GD~Ha~QGDGEv~~t-aiE~~~~vt~~v~viK~~~----l~ 216 (301)
T 2ii1_A 142 EPINNGTPGPHGGNLDTKDIKPGTTVYLPVEVDGALLALGDLHAAMGDGEILIC-GVEIAGTVTLKVNVKKERM----FP 216 (301)
T ss_dssp SCEETTSCBTTEEECCCTTCSTTCEEEEECCSTTEEEEEEEEESCCCTBCTTSC-CSEECEEEEEEEEEESSCC----SC
T ss_pred CCcCcCCCCccccccchhhhcCCCEEEEEEEeCCceEEecCceeccCCCcceee-EEEeeeEEEEEEEEECCCC----CC
Confidence 678999999999999999999999999999999999999999999999999998 5999999999999999842 23
Q ss_pred CCCCCCCCCCeeeeCCCCCCCCceEEEEecccCCCCCcccCCHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHhcccccCc
Q 027367 82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-KFGYSKEQVYLLLSCCPCEG 160 (224)
Q Consensus 82 ~~~~~~~~~P~~et~p~~p~~~~~~~~~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~-~~gls~~dAY~L~S~a~~d~ 160 (224)
+|++|++ +.|+++ |++. |+++|+|+|+++||+||+ ++|||++|||+|||++ +|+
T Consensus 217 --------~P~~et~------~~~~~~-G~~~---------dl~~A~r~A~~~mi~~L~~~~gls~~eAy~llS~a-~d~ 271 (301)
T 2ii1_A 217 --------LPALKTD------THFMTI-ASAE---------TLDAAAVQATKNMATFLANRTALSIEEAGMLLSGA-GDL 271 (301)
T ss_dssp --------SSEEECS------SEEEEE-EEES---------SHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH-CEE
T ss_pred --------CCEEECC------CcEEEE-EECC---------CHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHhHhh-cCc
Confidence 9999997 777775 8875 799999999999999998 6999999999999999 899
Q ss_pred eEeeecCCCCeEEEEEeecccccc
Q 027367 161 RISGIVDSPNAVATLAVPTAIFDQ 184 (224)
Q Consensus 161 rIsQvVd~p~~tv~~~iPk~if~~ 184 (224)
+|||||| ||+++++.|||++|++
T Consensus 272 ~IsqvVd-p~~~v~~~ipk~if~~ 294 (301)
T 2ii1_A 272 YVSQIVN-PLKTARFSLALHYFEK 294 (301)
T ss_dssp EEEESSS-SSEEEEEEEEHHHHHH
T ss_pred EEEEecC-CCeEEEEEEEHHHhhh
Confidence 9999999 9999999999999964
No 3
>2f4l_A Acetamidase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 2.50A {Thermotoga maritima} SCOP: b.23.3.1
Probab=100.00 E-value=1.9e-57 Score=410.56 Aligned_cols=151 Identities=26% Similarity=0.399 Sum_probs=141.5
Q ss_pred CccccCCCCCCcccccccCCCCCcEEEEeeeeCCeeeecCCccccCCCcccccccceeecceEEEEEEEEeCCcccccCC
Q 027367 2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP 81 (224)
Q Consensus 2 ~~~~Tipp~~~GGNmD~~~l~~GstlyLPV~V~GAlls~GD~HAaQGDGEV~~~gAiE~~~~vtlrv~viK~~~~~~~~p 81 (224)
|+++|+||++||||||+|+|++||||||||||+|||||+||+||+|||||||+| |||+++++||||+|+|+ . + +
T Consensus 145 ~~~~t~pP~~~GGNmD~~~l~~GstlylPV~V~GAl~s~GD~HaaQGDGEv~~t-aiE~~~~vtl~v~viK~-~--l--~ 218 (297)
T 2f4l_A 145 GEYPTGTAHRHGGNMDTKEITENVTVHLPVFQEGALLALGDVHATMGDGEVCVS-ACEVPAKVVVEIDVSKE-E--I--K 218 (297)
T ss_dssp SEEETTSEETTEEECCCTTCCTTCEEEEECCSTTEEEEEEEEESCCCTBCTTSC-CCBCCEEEEEEEEEECC-C--C--S
T ss_pred cCcCCCCCCccccccchhhhcCCCEEEEEEEeCCceEEecCceeccCCCcccee-EEEeeeEEEEEEEEeCC-C--C--C
Confidence 678999999999999999999999999999999999999999999999999998 59999999999999998 3 2 3
Q ss_pred CCCCCCCCCCeeeeCCCCCCCCceEEEEecccCCCCCcccCCHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHhcccccCc
Q 027367 82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-KFGYSKEQVYLLLSCCPCEG 160 (224)
Q Consensus 82 ~~~~~~~~~P~~et~p~~p~~~~~~~~~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~-~~gls~~dAY~L~S~a~~d~ 160 (224)
+|++|++ +.|+++ |++. |+++|+|+|+++||+||+ ++|||++|||+|||++ +|+
T Consensus 219 --------~P~~et~------~~~~~~-G~~~---------dl~~A~r~A~~~mi~~L~~~~gls~~eAy~llS~a-~d~ 273 (297)
T 2f4l_A 219 --------WPVVETN------DAYYII-VSLP---------DIEEALKEVTRETVWFIQRRKTIPFTDAYMLASLS-VDV 273 (297)
T ss_dssp --------SCEEECS------SEEEEE-EEES---------SHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH-CEE
T ss_pred --------CCEEECC------CcEEEE-EECC---------CHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHhHhh-cCc
Confidence 9999997 677775 8876 799999999999999998 6999999999999999 899
Q ss_pred eEeeecCCCCeEEEEEeecccccc
Q 027367 161 RISGIVDSPNAVATLAVPTAIFDQ 184 (224)
Q Consensus 161 rIsQvVd~p~~tv~~~iPk~if~~ 184 (224)
+|||||| ||+++++.|||++|++
T Consensus 274 ~IsqvVd-pn~~v~~~ipk~if~~ 296 (297)
T 2f4l_A 274 GISQLVN-PAKTAKARIPKYIFTG 296 (297)
T ss_dssp EEEESSS-SSEEEEEEEEGGGTC-
T ss_pred EEEEEcC-CCeEEEEEEEHHHccC
Confidence 9999999 9999999999999974
No 4
>3mjj_A Predicted acetamidase/formamidase; beta/alpha structure, hydrolase; 1.99A {Thermoanaerobacter tengcongensis} PDB: 3tkk_A
Probab=100.00 E-value=2.8e-57 Score=410.02 Aligned_cols=152 Identities=29% Similarity=0.449 Sum_probs=142.7
Q ss_pred CccccCCCCCCcccccccCCCCCcEEEEeeeeCCeeeecCCccccCCCcccccccceeecceEEEEEEEEeCCcccccCC
Q 027367 2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP 81 (224)
Q Consensus 2 ~~~~Tipp~~~GGNmD~~~l~~GstlyLPV~V~GAlls~GD~HAaQGDGEV~~~gAiE~~~~vtlrv~viK~~~~~~~~p 81 (224)
|+++|+|||+||||||+|+|++||||||||+|+|||||+||+||+|||||||+| |||+++++||||+|+|+.. ++
T Consensus 144 ~~~~t~~P~~~GGNmD~~~l~~GstlylPV~v~GAlls~GD~HaaQGDGEv~~t-aiE~~~~vt~~v~viK~~~----~~ 218 (301)
T 3mjj_A 144 GSINCGTPGSHGGNMDTTLIAEGAEVYFPVFVEGALLALGDLHALMGDGEVGVS-GVEVAGKVLLEVEVIKGLN----LK 218 (301)
T ss_dssp SCEETTCEETTEEECCCTTCSTTCEEEEECCSTTCCEEEEEEESCCCTBCTTSC-CCBCCEEEEEEEEEECSCC----CS
T ss_pred cCcCcCCCCCcccccChhhhcCCCEEEEEEEeCCeEEEecCceeccCCCceeee-EEeeceEEEEEEEEecCCC----CC
Confidence 678999999999999999999999999999999999999999999999999998 6999999999999999842 23
Q ss_pred CCCCCCCCCCeeeeCCCCCCCCceEEEEecccCCCCCcccCCHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHhcccccCc
Q 027367 82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-KFGYSKEQVYLLLSCCPCEG 160 (224)
Q Consensus 82 ~~~~~~~~~P~~et~p~~p~~~~~~~~~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~-~~gls~~dAY~L~S~a~~d~ 160 (224)
+|++||+ ++|+++ |++. |+++|+|+|+++||+||+ ++||+++|||+|||++ +|+
T Consensus 219 --------~P~~et~------~~~~~~-g~~~---------~ld~A~r~A~~~mi~~L~~~~gls~~eAy~llS~a-~d~ 273 (301)
T 3mjj_A 219 --------NPVVKTA------EVTATI-ASAE---------SLDKAVEIAVHDMAELFKKHTDLSTEGIATLFSIT-GNA 273 (301)
T ss_dssp --------SCEEECS------SEEEEE-EEES---------SHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-CEE
T ss_pred --------CCEEECC------CcEEEE-EeCC---------CHHHHHHHHHHHHHHHHHHhhCcCHHHHHHHhHhh-cCc
Confidence 9999997 899997 6644 799999999999999998 5999999999999998 899
Q ss_pred eEeeecCCCCeEEEEEeecccccc
Q 027367 161 RISGIVDSPNAVATLAVPTAIFDQ 184 (224)
Q Consensus 161 rIsQvVd~p~~tv~~~iPk~if~~ 184 (224)
||||||| ||+++++.|||++|++
T Consensus 274 ~IsqvVd-p~~~v~~~ipk~i~~~ 296 (301)
T 3mjj_A 274 QISQVVD-PLKTARFSLPNWILES 296 (301)
T ss_dssp EEEESSS-SSEEEEEEEEHHHHHH
T ss_pred EEEEecC-CCeEEEEEEEHHHhHh
Confidence 9999999 9999999999999975
No 5
>3b9t_A Twin-arginine translocation pathway signal protei; YP_546212.1, predicted acetamidase/formamidase, acetamidase/formamidase family; 1.58A {Methylobacillus flagellatus KT}
Probab=100.00 E-value=7.2e-55 Score=414.69 Aligned_cols=169 Identities=26% Similarity=0.318 Sum_probs=145.4
Q ss_pred CccccCCCCCCcccccccCCCCCcEEEEeeeeCCeeeecCCccccCCCcccccccceeecceEEEEEEEEeCCcccccCC
Q 027367 2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP 81 (224)
Q Consensus 2 ~~~~Tipp~~~GGNmD~~~l~~GstlyLPV~V~GAlls~GD~HAaQGDGEV~~~gAiE~~~~vtlrv~viK~~~~~~~~p 81 (224)
|.++|+||++||||||||+|++||||||||||+|||||+||+||+|||||||+| |||+++++||||+|+|+.... . +
T Consensus 302 ~~~~TvpP~~hGGNmDik~L~~GStlYLPV~V~GAlfsvGD~HaaQGDGEvcGT-AIE~s~~vtl~v~ViK~~~~~-g-~ 378 (484)
T 3b9t_A 302 DLVNSVPPSHFGGNIDNWRIGKGATMYYPVSVAGGLFSVGDPHASQGDSEMCGT-AIECSLTGTFQFILHKKADLP-G-T 378 (484)
T ss_dssp SSEESSSCBTTEEECCCTTCSTTCEEEEECCSTTEEEEEEEEEEECCTBCTTSC-CEECCEEEEEEEEEECGGGCT-T-S
T ss_pred CCCCCCCCCCcCCccchhhhcCCcEEEEEEEecCceEeccCcccccCCCcccce-EEeeceEEEEEEEEEcCCccc-c-c
Confidence 678999999999999999999999999999999999999999999999999987 799999999999999985410 0 0
Q ss_pred CCCCCCCCCCeeeeCCCCCCCCceEEEEecccCC----CCCcc------cCCHHHHHHHHHHHHHHHHH-HcCCCHHHHH
Q 027367 82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDE----SGGQH------YLDATVAYKRAVLNAIDYLS-KFGYSKEQVY 150 (224)
Q Consensus 82 ~~~~~~~~~P~~et~p~~p~~~~~~~~~G~~~d~----~g~~~------~ldl~~A~r~A~~~mi~~L~-~~gls~~dAY 150 (224)
. .....+|++||+ ++|+++ |+++++ .|++. ..||++|+|+|+++||+||+ ++|||++|||
T Consensus 379 ~--~~~l~~P~~et~------~~~i~~-G~s~~~~l~~~g~~~~~~i~~~~~Ld~A~r~A~~~mi~~L~~~~Gls~~eAy 449 (484)
T 3b9t_A 379 P--LADLQYPLLETQ------DEWVLH-GFSYANYLAELGPDAQNSIFSKSSLDLALKDAFRKMRHFLMQTQNLTEDEAV 449 (484)
T ss_dssp T--TTTCCSCEEECS------SEEEEE-EESSTTHHHHHGGGHHHHHHHHCCHHHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred c--ccCCCCCccCCC------CeEEEE-EeccccchhhcccccccccccCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 0 001128999997 899975 998653 23210 12788999999999999997 7999999999
Q ss_pred HHhcccccCceEeeecCCCCeEEEEEeecccccc
Q 027367 151 LLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQ 184 (224)
Q Consensus 151 ~L~S~a~~d~rIsQvVd~p~~tv~~~iPk~if~~ 184 (224)
+|||++ +|++|||||| +|++|++.|||++|++
T Consensus 450 ~LlS~a-~d~~IsQVVD-~n~~v~~~ipk~if~~ 481 (484)
T 3b9t_A 450 SLMSIG-VDFGITQVVD-GNWGVHAVVKKGIFPG 481 (484)
T ss_dssp HHHHHS-CEEEEEESSS-SSCEEEEEEEGGGCCC
T ss_pred HHHHhh-cCceEEEEeC-CCeEEEEEEEHHHccc
Confidence 999999 8999999999 6999999999999963
No 6
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=60.38 E-value=8.6 Score=30.39 Aligned_cols=26 Identities=42% Similarity=0.607 Sum_probs=21.4
Q ss_pred EecccCCCCCcccCCHHHHHHHHHHHHHHH
Q 027367 109 EGISVDESGGQHYLDATVAYKRAVLNAIDY 138 (224)
Q Consensus 109 ~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~ 138 (224)
+|...|-.|. |.+.|+++|++++|..
T Consensus 11 mGmG~DlhGq----D~TkAA~RAvrDAI~~ 36 (122)
T 3c8l_A 11 MGMGIDQHGQ----EPTIAASRAVRNAIAH 36 (122)
T ss_dssp EEEEEESSSS----CHHHHHHHHHHHHHTT
T ss_pred ecccccccCc----cHHHHHHHHHHHHHhh
Confidence 5777775555 9999999999999975
No 7
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A
Probab=44.91 E-value=41 Score=25.23 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=31.6
Q ss_pred ceEEEEec-ccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027367 104 EWLVFEGI-SVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (224)
Q Consensus 104 ~~~~~~G~-~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~d 148 (224)
.++.++|- ..|..|+...-|..+.++++++|+...|++.|.+.++
T Consensus 24 ~~~~vSGq~~~~~~g~~~~~~~~~Q~~~~l~ni~~~L~~ag~~~~~ 69 (124)
T 2cvl_A 24 GFVFVSGQIPLAPDGSLVEGDIRVQTERVMENLKAVLEAAGSGLSR 69 (124)
T ss_dssp TEEEEEEECSBCTTSCBCCSSHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEeeeCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 55655653 2333444334589999999999999999888877654
No 8
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1
Probab=42.30 E-value=46 Score=25.16 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=30.7
Q ss_pred ceEEEEec-ccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHH
Q 027367 104 EWLVFEGI-SVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKE 147 (224)
Q Consensus 104 ~~~~~~G~-~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~ 147 (224)
.++.++|- ..|..|+...-|+++.++++++|+...|++.|.+.+
T Consensus 28 ~~l~vSGq~~~~~~g~~~~g~~~~Q~~~~l~ni~~~L~~aG~~~~ 72 (129)
T 1jd1_A 28 NLIFLSGQIPVTPDNKLVEGSIADKAEQVIQNIKNVLEASNSSLD 72 (129)
T ss_dssp TEEEEEEECSBCTTSCBCCSCHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred CEEEEeeeCCcCCCCCCcCCCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 56666663 233334333348999999999999999988887654
No 9
>2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=42.01 E-value=50 Score=24.82 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=31.7
Q ss_pred ceEEEEec-ccCCC-CCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027367 104 EWLVFEGI-SVDES-GGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (224)
Q Consensus 104 ~~~~~~G~-~~d~~-g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~d 148 (224)
.++.++|- ..|.. |+...-|+.+.++++++|+...|++.|.+.++
T Consensus 25 ~~l~vSGq~~~~~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~ 71 (126)
T 2dyy_A 25 NFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLND 71 (126)
T ss_dssp TEEEEEEECSBCTTTCSBCSSSHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEeeeCCcCCCCCcCCCcCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 56666653 22322 44333589999999999999999988877664
No 10
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1
Probab=40.02 E-value=45 Score=25.06 Aligned_cols=45 Identities=20% Similarity=0.099 Sum_probs=31.2
Q ss_pred ceEEEEec-ccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027367 104 EWLVFEGI-SVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (224)
Q Consensus 104 ~~~~~~G~-~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~d 148 (224)
.++.++|- ..|..|+...-|.++.++++++|+...|++.|.+.++
T Consensus 24 ~~v~vSGq~~~~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~ 69 (124)
T 1qd9_A 24 NMFYSSGQIPLTPSGEMVNGDIKEQTHQVFSNLKAVLEEAGASFET 69 (124)
T ss_dssp TEEEECCBCSBCTTSCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEeeeCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 56666553 2233343333589999999999999999888877654
No 11
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1
Probab=36.82 E-value=62 Score=25.11 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=31.8
Q ss_pred ceEEEEec-ccCCC-CCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027367 104 EWLVFEGI-SVDES-GGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (224)
Q Consensus 104 ~~~~~~G~-~~d~~-g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~d 148 (224)
.++.++|- ..|.. |+...-|+.+.++++++|+...|++.|.+.++
T Consensus 37 ~~lfvSGq~~~d~~tG~~~~~d~~~Qt~~~l~ni~~~L~~aG~~l~~ 83 (140)
T 2b33_A 37 NMMFVSGQIPIDPETGELVQGTIEEKTERVLENLKAILEAGGFSLKD 83 (140)
T ss_dssp TEEEEEEECSBCTTTCCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEEeeCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 56666663 23322 44333589999999999999999988877655
No 12
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1
Probab=32.84 E-value=55 Score=24.70 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=31.2
Q ss_pred ceEEEEec-ccCCC-CCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027367 104 EWLVFEGI-SVDES-GGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (224)
Q Consensus 104 ~~~~~~G~-~~d~~-g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~d 148 (224)
.++.++|- ..|.. |+...-|+.+.++++++|+...|++.|.+.++
T Consensus 27 ~~l~vSGq~~~~~~~g~~~~~~~~~Q~~~~l~ni~~~L~~ag~~l~~ 73 (128)
T 1x25_A 27 NTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSLSD 73 (128)
T ss_dssp TEEEEEEECSEETTTTEECSSCHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEeeeCCcCCCCCcCCCccHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 55555552 22222 33323589999999999999999988877665
No 13
>3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae}
Probab=32.25 E-value=78 Score=25.09 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=31.5
Q ss_pred ceEEEEec-ccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027367 104 EWLVFEGI-SVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (224)
Q Consensus 104 ~~~~~~G~-~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~d 148 (224)
.++.++|- ..|..|....-|+++.++++++|+...|++.|.+.++
T Consensus 52 ~~lfvSGq~~~d~~g~~~~gdi~~Qt~~~l~Ni~a~L~~aG~~l~d 97 (153)
T 3quw_A 52 NFVYVSGQIPYTPDNKPVQGSISEKAEQVFQNVKNILAESNSSLDN 97 (153)
T ss_dssp TEEEEEEECSBCTTSCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEeeeCCcCCCCCCcCCCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 56666653 2233343333489999999999999999988877654
No 14
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0
Probab=31.26 E-value=89 Score=23.41 Aligned_cols=46 Identities=13% Similarity=-0.033 Sum_probs=31.5
Q ss_pred CceEEEEecc-cCCC-CCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027367 103 SEWLVFEGIS-VDES-GGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (224)
Q Consensus 103 ~~~~~~~G~~-~d~~-g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~d 148 (224)
..++.++|-. .|.. |+...-|+.+.++++++|+...|++.|.+.++
T Consensus 26 g~~l~vSGq~~~~~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~l~~ 73 (127)
T 3r0p_A 26 NNTVYLSGQIPLDPVTMQLVEGDFAVQAHQVFKNLRAVCEAAGGGLRD 73 (127)
T ss_dssp TTEEEEEEECSBCTTTSSBCSSCHHHHHHHHHHHHHHHHHHTTSCGGG
T ss_pred CCEEEEeccCCcCCCCCcCCCCCHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 3566666532 2222 43333589999999999999999888877654
No 15
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A
Probab=30.20 E-value=96 Score=23.65 Aligned_cols=45 Identities=20% Similarity=0.116 Sum_probs=31.2
Q ss_pred ceEEEEec-ccCCC-CCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027367 104 EWLVFEGI-SVDES-GGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (224)
Q Consensus 104 ~~~~~~G~-~~d~~-g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~d 148 (224)
.++.++|- ..|.. |+...-|+++.++++++|+...|++.|.+.++
T Consensus 28 ~~l~vSGq~~~d~~~g~~~~~d~~~Q~~~~l~ni~~~L~~aG~~l~~ 74 (136)
T 1qah_A 28 RTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEILKAAGCDFTN 74 (136)
T ss_dssp TEEEEEEECCBCTTTCSBCSSCHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEeeECCcCCCCCcCCCcCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 56666653 22222 33333589999999999999999988877764
No 16
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} SCOP: d.79.1.0
Probab=29.22 E-value=98 Score=23.14 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=31.3
Q ss_pred ceEEEEecc-cCC-CCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027367 104 EWLVFEGIS-VDE-SGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (224)
Q Consensus 104 ~~~~~~G~~-~d~-~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~d 148 (224)
.++.++|-. .|. .|+...-|+++.+|++++|+...|++.|.+.++
T Consensus 24 ~~l~vSGq~~~d~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~~~~ 70 (125)
T 3l7q_A 24 NLLFASGQVPLSPETGQVIGTTIEEQTQQVLKNISAILTEAGTDFDH 70 (125)
T ss_dssp TEEEEEEECSBCTTTCSBCCSSHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred CEEEEeccCCcCCCCCCCCCcCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 566666532 222 344334589999999999999999888877654
No 17
>1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1
Probab=27.36 E-value=91 Score=24.68 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=31.4
Q ss_pred ceEEEEec-ccCCC-CCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027367 104 EWLVFEGI-SVDES-GGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (224)
Q Consensus 104 ~~~~~~G~-~~d~~-g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~d 148 (224)
.++.++|- ..|.. |+...-|.++.++++++|+...|++.|.+.++
T Consensus 56 ~~lfvSGq~~~d~~tG~l~~~d~~~Qt~~~l~ni~~iL~~aG~~l~~ 102 (156)
T 1xrg_A 56 SFVYTSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNK 102 (156)
T ss_dssp TEEEECCBCCBCTTTSSBCSSSHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEEeECCcCCCCCcCCCcCHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 56666653 22322 44333589999999999999999988877665
No 18
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV}
Probab=26.88 E-value=1.1e+02 Score=23.72 Aligned_cols=45 Identities=13% Similarity=0.004 Sum_probs=31.3
Q ss_pred CceEEEEec-ccCCC-CCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027367 103 SEWLVFEGI-SVDES-GGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (224)
Q Consensus 103 ~~~~~~~G~-~~d~~-g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~d 148 (224)
..++.++|- ..|.. |+... |+++.++++++|+...|++.|.+.++
T Consensus 42 g~~lfvSGq~~~d~~~g~~~~-d~~~Qt~~~l~ni~aiL~~aG~~l~~ 88 (143)
T 3k0t_A 42 GNTVYMSGQIPLDPSTMELVE-GIEAQITQVFENLKSVAQAAGGSFKD 88 (143)
T ss_dssp TTEEEEEEECSBCTTTCSBCS-SHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCEEEEeeeCCcCCCCCcCCc-CHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 356666653 22322 44323 89999999999999999888887765
No 19
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa}
Probab=24.46 E-value=1.2e+02 Score=22.65 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=29.0
Q ss_pred ceEEEEecc-cCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027367 104 EWLVFEGIS-VDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (224)
Q Consensus 104 ~~~~~~G~~-~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~d 148 (224)
.++.++|-. .|. .-|+++.++++++|+...|++.|.+.++
T Consensus 19 ~~vfvSGq~~~d~-----~~d~~~Q~~~~l~ni~~~L~~aG~~~~~ 59 (122)
T 3k12_A 19 NTVYIGGQVADDP-----SGDIQDQTRQILENIDRLLQSVGSDRGQ 59 (122)
T ss_dssp TEEEEEEECCSST-----TSCHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEeeccCCCC-----CCCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 566666632 221 1389999999999999999888877654
No 20
>2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1
Probab=24.46 E-value=64 Score=24.07 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=30.5
Q ss_pred ceEEEEecc-cCCC-CCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027367 104 EWLVFEGIS-VDES-GGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (224)
Q Consensus 104 ~~~~~~G~~-~d~~-g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~d 148 (224)
.++.++|-. .|.. |+...-|+.+.++++++|+...|++.|.+.++
T Consensus 19 ~~l~vSGq~~~~~~~g~~~~~d~~~Q~~~~l~ni~~~L~~ag~~l~~ 65 (123)
T 2cwj_A 19 CFMFVSGQIPINPETGALEEGGFKESAKRALDNLKAIVEGAGYSMDD 65 (123)
T ss_dssp TEEEEEEECCEEGGGTEECSSSSHHHHHHHHHHHHHHHHHTSCCGGG
T ss_pred CEEEEeccCCCCCCCCcCCCccHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 455555532 1221 32223478899999999999999988887766
No 21
>1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1
Probab=23.17 E-value=1.3e+02 Score=22.58 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=29.5
Q ss_pred ceEEEEec-ccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHH
Q 027367 104 EWLVFEGI-SVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKE 147 (224)
Q Consensus 104 ~~~~~~G~-~~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~ 147 (224)
.++.++|- ..|..|+. .-|.++.++++++|+...|++.|.+.+
T Consensus 29 ~~l~vSGq~~~~~~g~~-~~d~~~Q~~~~l~ni~~~L~~aG~~~~ 72 (131)
T 1pf5_A 29 DLLFVSGQVGSREDGTP-EPDFQQQVRLAFDNLHATLAAAGCTFD 72 (131)
T ss_dssp TEEEEEEECCBCTTSCB-CSSHHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CEEEEcccCCcCCCCcc-CcCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 56665653 22333332 248999999999999999988777654
No 22
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A*
Probab=22.85 E-value=1e+02 Score=24.10 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=31.2
Q ss_pred ceEEEEecc-cCC-CCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027367 104 EWLVFEGIS-VDE-SGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (224)
Q Consensus 104 ~~~~~~G~~-~d~-~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~d 148 (224)
.++.++|-- .|. .|+...-|+++.++++++|+...|++.|.+.++
T Consensus 48 ~~lfvSGq~~~d~~~G~~~~~d~~~Q~~~~l~nl~aiL~~aG~~l~~ 94 (148)
T 3m1x_A 48 GXVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDK 94 (148)
T ss_dssp TEEEEEEEESEETTTTEESCSSHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEEeeCCcCCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 566665532 222 333323489999999999999999988877765
No 23
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=22.39 E-value=51 Score=23.67 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=32.2
Q ss_pred HHHHH-HcCCCHHHHHHHhcccccCceEeeecCCCCeEEEE
Q 027367 136 IDYLS-KFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATL 175 (224)
Q Consensus 136 i~~L~-~~gls~~dAY~L~S~a~~d~rIsQvVd~p~~tv~~ 175 (224)
+++|+ .++|+.+++-..+|-...+-+|.--.|.++.++.+
T Consensus 33 l~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f 73 (84)
T 1ufm_A 33 FEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF 73 (84)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEE
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEe
Confidence 45676 58999999998888765788888888888888754
No 24
>3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus}
Probab=20.75 E-value=1.3e+02 Score=23.63 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=29.6
Q ss_pred CceEEEEecc-cCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHH
Q 027367 103 SEWLVFEGIS-VDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKE 147 (224)
Q Consensus 103 ~~~~~~~G~~-~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~ 147 (224)
..++.++|-- .|..+....-|+++.+|++++|+...|++.|.+.+
T Consensus 48 g~~lfvSGq~~~d~~~g~v~~d~~~Qt~~~l~nl~a~L~~aG~~l~ 93 (153)
T 3vcz_A 48 GNMVLTSGQIPVNPATGEVPADIAAQARQSLDNVKAVVEASGLTVG 93 (153)
T ss_dssp SSEEEECCBCSCCTTTCCCCSSHHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCEEEEeeecccCCCCCeeCcCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3566666532 22211111248999999999999999988887654
Done!