Query 027367
Match_columns 224
No_of_seqs 121 out of 603
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 14:38:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027367.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027367hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f4la1 b.23.3.1 (A:1-283) Put 100.0 1.6E-56 1.2E-60 400.0 14.9 150 2-183 133-283 (283)
2 d1zq1c1 a.182.1.2 (C:457-512) 33.8 11 0.0008 23.7 2.2 21 135-155 7-27 (56)
3 d2d6fc1 a.182.1.2 (C:445-503) 27.9 15 0.0011 23.3 2.0 20 136-155 8-27 (59)
4 d1qd9a_ d.79.1.1 (A:) Purine r 23.8 61 0.0044 22.3 5.1 47 103-149 23-70 (124)
5 d1ufma_ a.4.5.47 (A:) COP9 sig 22.3 46 0.0034 22.1 4.0 40 136-175 33-73 (84)
6 d1xrga_ d.79.1.1 (A:) Purine r 20.6 76 0.0055 21.8 5.1 47 103-149 24-72 (125)
7 d2cvla1 d.79.1.1 (A:1-124) Put 20.4 89 0.0065 21.3 5.4 46 103-148 23-69 (124)
8 d1qu9a_ d.79.1.1 (A:) Conserve 20.2 78 0.0057 21.7 5.1 45 104-148 24-69 (127)
9 d1sfxa_ a.4.5.50 (A:) Hypothet 19.5 38 0.0027 22.9 3.0 24 132-155 6-29 (109)
10 d1np3a1 a.100.1.2 (A:183-327) 16.9 70 0.0051 23.0 4.3 30 126-155 18-47 (145)
No 1
>d2f4la1 b.23.3.1 (A:1-283) Putative acetamidase TM0119 {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=1.6e-56 Score=400.05 Aligned_cols=150 Identities=26% Similarity=0.413 Sum_probs=140.9
Q ss_pred CccccCCCCCCcccccccCCCCCcEEEEeeeeCCeeeecCCccccCCCcccccccceeecceEEEEEEEEeCCcccccCC
Q 027367 2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP 81 (224)
Q Consensus 2 ~~~~Tipp~~~GGNmD~~~l~~GstlyLPV~V~GAlls~GD~HAaQGDGEV~~~gAiE~~~~vtlrv~viK~~~~~~~~p 81 (224)
+.++|+||++||||||+|+|++||||||||||+|||||+||+||+|||||||++ |||+++++||||+|+|+.. +
T Consensus 133 g~~~t~~p~~~GGNmD~~~l~~GstlyLPV~v~GAll~~GD~HAaQGDGEv~gt-aiE~~~~vtl~v~v~K~~~-----~ 206 (283)
T d2f4la1 133 GEYPTGTAHRHGGNMDTKEITENVTVHLPVFQEGALLALGDVHATMGDGEVCVS-ACEVPAKVVVEIDVSKEEI-----K 206 (283)
T ss_dssp SEEETTSEETTEEECCCTTCCTTCEEEEECCSTTEEEEEEEEESCCCTBCTTSC-CCBCCEEEEEEEEEECCCC-----S
T ss_pred ccccccCccccccccCchhhcCCCEEEEeeecCCcEEEeccceeecCCCceeeE-EEeeeeEEEEEEEEccCcc-----c
Confidence 457899999999999999999999999999999999999999999999999986 7999999999999999842 3
Q ss_pred CCCCCCCCCCeeeeCCCCCCCCceEEEEecccCCCCCcccCCHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHhcccccCc
Q 027367 82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-KFGYSKEQVYLLLSCCPCEG 160 (224)
Q Consensus 82 ~~~~~~~~~P~~et~p~~p~~~~~~~~~G~~~d~~g~~~~ldl~~A~r~A~~~mi~~L~-~~gls~~dAY~L~S~a~~d~ 160 (224)
||++|++ ++|+++ |+.. ||++|+|+|+++||+||+ ++||+++|||+|||++ +|+
T Consensus 207 --------~P~~et~------~~~~~~-g~~~---------~L~~A~r~A~~~mi~~l~~~~gl~~~eAy~L~S~a-~d~ 261 (283)
T d2f4la1 207 --------WPVVETN------DAYYII-VSLP---------DIEEALKEVTRETVWFIQRRKTIPFTDAYMLASLS-VDV 261 (283)
T ss_dssp --------SCEEECS------SEEEEE-EEES---------SHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH-CEE
T ss_pred --------CCcccCC------CcEEEe-CCCC---------CHHHHHHHHHHHHHHHHHHhhCcCHHHHHHHhhhe-eCc
Confidence 9999997 889987 7754 799999999999999997 6999999999999998 899
Q ss_pred eEeeecCCCCeEEEEEeeccccc
Q 027367 161 RISGIVDSPNAVATLAVPTAIFD 183 (224)
Q Consensus 161 rIsQvVd~p~~tv~~~iPk~if~ 183 (224)
||||+|| |+++|++.|||+||.
T Consensus 262 ~I~qvVd-p~~~v~~~ipk~ift 283 (283)
T d2f4la1 262 GISQLVN-PAKTAKARIPKYIFT 283 (283)
T ss_dssp EEEESSS-SSEEEEEEEEGGGTC
T ss_pred eeeEEEC-CCeEEEEEEEHHHCC
Confidence 9999999 899999999999994
No 2
>d1zq1c1 a.182.1.2 (C:457-512) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=33.82 E-value=11 Score=23.66 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=16.8
Q ss_pred HHHHHHHcCCCHHHHHHHhcc
Q 027367 135 AIDYLSKFGYSKEQVYLLLSC 155 (224)
Q Consensus 135 mi~~L~~~gls~~dAY~L~S~ 155 (224)
..+|..+|||+..||-.|+|-
T Consensus 7 ~~Ry~~eygLs~~dA~~l~~~ 27 (56)
T d1zq1c1 7 VERYVKEYKLDRSLAQTLVDD 27 (56)
T ss_dssp HHHHHTTTCCCHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCC
Confidence 456667899999999988764
No 3
>d2d6fc1 a.182.1.2 (C:445-503) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=27.88 E-value=15 Score=23.27 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=16.4
Q ss_pred HHHHHHcCCCHHHHHHHhcc
Q 027367 136 IDYLSKFGYSKEQVYLLLSC 155 (224)
Q Consensus 136 i~~L~~~gls~~dAY~L~S~ 155 (224)
-+|+.+|||+..+|-.|++-
T Consensus 8 ~R~~~eygLs~~dA~~L~~~ 27 (59)
T d2d6fc1 8 ERIMRDYGLSEDLASQLVKR 27 (59)
T ss_dssp HHHHHTTCCCHHHHHHHHHT
T ss_pred HHHHHHcCcCHHHHHHHHcC
Confidence 45667899999999998754
No 4
>d1qd9a_ d.79.1.1 (A:) Purine regulatory protein YabJ {Bacillus subtilis [TaxId: 1423]}
Probab=23.77 E-value=61 Score=22.27 Aligned_cols=47 Identities=21% Similarity=0.110 Sum_probs=33.4
Q ss_pred CceEEEEecc-cCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 027367 103 SEWLVFEGIS-VDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQV 149 (224)
Q Consensus 103 ~~~~~~~G~~-~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~dA 149 (224)
+.|+.++|-. .|..+....-|+++-++.++.|+-..|++.|.+.++.
T Consensus 23 g~~lfiSGq~~~d~~~~~~~~~~~~Q~~~~l~ni~~iL~~aG~~~~di 70 (124)
T d1qd9a_ 23 NNMFYSSGQIPLTPSGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETV 70 (124)
T ss_dssp TTEEEECCBCSBCTTSCBCCSCHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCEEEEEeeecccccceeecchhHHHHHHHHHHHHHHHHHcCCCcccC
Confidence 4677776532 2223333455888899999999999999889888763
No 5
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.28 E-value=46 Score=22.11 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=32.2
Q ss_pred HHHHH-HcCCCHHHHHHHhcccccCceEeeecCCCCeEEEE
Q 027367 136 IDYLS-KFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATL 175 (224)
Q Consensus 136 i~~L~-~~gls~~dAY~L~S~a~~d~rIsQvVd~p~~tv~~ 175 (224)
+++|+ .++++.+++..+++-...+-+|.--+|.++.+|.+
T Consensus 33 l~~la~~l~l~~~evE~~l~~mI~~~~i~akIDq~~g~V~F 73 (84)
T d1ufma_ 33 FEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF 73 (84)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCeEEEEEeCCCCEEEE
Confidence 45676 58999999998887666788888888888888865
No 6
>d1xrga_ d.79.1.1 (A:) Purine regulatory protein YabJ {Clostridium thermocellum [TaxId: 1515]}
Probab=20.63 E-value=76 Score=21.79 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=33.0
Q ss_pred CceEEEEecc-cCCCC-CcccCCHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 027367 103 SEWLVFEGIS-VDESG-GQHYLDATVAYKRAVLNAIDYLSKFGYSKEQV 149 (224)
Q Consensus 103 ~~~~~~~G~~-~d~~g-~~~~ldl~~A~r~A~~~mi~~L~~~gls~~dA 149 (224)
..|+.++|.. .+..+ ..+..|.++-++.++.++-..|++.|.+.++.
T Consensus 24 g~~i~vSGq~~~~~~~~~~~~~d~~~Q~~~~l~ni~~~L~~aG~~~~dv 72 (125)
T d1xrga_ 24 GSFVYTSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVLEAAGSSLNKV 72 (125)
T ss_dssp TTEEEECCBCCBCTTTSSBCSSSHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCEEEEEEEeecccccceeecCchhHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 3566666532 22222 22456999999999999999999889988763
No 7
>d2cvla1 d.79.1.1 (A:1-124) Putative translation intiation inhibitor TTHA0137 {Thermus thermophilus [TaxId: 274]}
Probab=20.37 E-value=89 Score=21.31 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=32.3
Q ss_pred CceEEEEeccc-CCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027367 103 SEWLVFEGISV-DESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (224)
Q Consensus 103 ~~~~~~~G~~~-d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~d 148 (224)
+.|+.++|..- |..+....-|+++-++.+++++...|++.|++.++
T Consensus 23 g~~~~vSGq~~~d~~~~~~~~~~~~Q~~~~l~~i~~~L~~~G~~~~d 69 (124)
T d2cvla1 23 GGFVFVSGQIPLAPDGSLVEGDIRVQTERVMENLKAVLEAAGSGLSR 69 (124)
T ss_dssp TTEEEEEEECSBCTTSCBCCSSHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCEEEEEEecCCCCCcccccCCHhHHHHHHHHHHHHHHHHhcCCccc
Confidence 46777665432 22222233488999999999999999989998765
No 8
>d1qu9a_ d.79.1.1 (A:) Conserved 'hypothetical' protein YjgF {Escherichia coli [TaxId: 562]}
Probab=20.15 E-value=78 Score=21.67 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=31.1
Q ss_pred ceEEEEecc-cCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHH
Q 027367 104 EWLVFEGIS-VDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQ 148 (224)
Q Consensus 104 ~~~~~~G~~-~d~~g~~~~ldl~~A~r~A~~~mi~~L~~~gls~~d 148 (224)
.++.++|-- .|..+..-.-|+++-++++++++...|++.|++.++
T Consensus 24 ~~vfvSGq~~~~~~~~~~~~d~~~Q~~~~~~~i~~~L~~aG~~~~d 69 (127)
T d1qu9a_ 24 NMIITSGQIPVNPKTGEVPADVAAQARQSLDNVKAIVEAAGLKVGD 69 (127)
T ss_dssp SEEEECCBCSCCTTTCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CEEEEEEecCCCCcceEeeCCHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 566665532 222332223589999999999999999888888765
No 9
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=19.46 E-value=38 Score=22.95 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcc
Q 027367 132 VLNAIDYLSKFGYSKEQVYLLLSC 155 (224)
Q Consensus 132 ~~~mi~~L~~~gls~~dAY~L~S~ 155 (224)
+.++++.|.++||+..|+..|..+
T Consensus 6 ~~~l~~~L~~lGlt~~e~~v~~~L 29 (109)
T d1sfxa_ 6 LGELVKALEKLSFKPSDVRIYSLL 29 (109)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 346778888899999998777665
No 10
>d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=16.92 E-value=70 Score=22.96 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhcc
Q 027367 126 VAYKRAVLNAIDYLSKFGYSKEQVYLLLSC 155 (224)
Q Consensus 126 ~A~r~A~~~mi~~L~~~gls~~dAY~L~S~ 155 (224)
-++..-++...+.|.+.|++++.||.-|--
T Consensus 18 Ggv~~~~~~~fe~lve~G~~pe~Ay~e~~h 47 (145)
T d1np3a1 18 GGCVELVKAGFETLVEAGYAPEMAYFECLH 47 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 466666777888888999999999987543
Done!