BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027369
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/202 (49%), Positives = 130/202 (64%), Gaps = 3/202 (1%)
Query: 24 DPSPLQDICVAIDEPKNAVFVNGKFCKDPKLAKPEDFFFSG-LDQPGDTANRLGFKVTTV 82
DP PLQD CVA D AV VNG CK P +DF FS L + G+T+ G VT +
Sbjct: 2 DPDPLQDFCVA-DLDGKAVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTEL 59
Query: 83 NVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLI 142
+V + PG NTLGVS AR+DFAP G NPPH HPRATEI +V++G L VG + S N L
Sbjct: 60 DVAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119
Query: 143 AKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGFGSQNPGVITIANTVFGADPPINPDFL 202
++V+ G+ FV P G++HFQFN+GKT A F SQNPG++ + T+FG+DPPI L
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179
Query: 203 GKAFQLDPQVVKDLQNKFMNGD 224
KA +++ VV+ L++KF G
Sbjct: 180 TKALRVEAGVVELLKSKFAGGS 201
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 129/202 (63%), Gaps = 3/202 (1%)
Query: 24 DPSPLQDICVAIDEPKNAVFVNGKFCKDPKLAKPEDFFFSG-LDQPGDTANRLGFKVTTV 82
DP PLQD CVA D AV VNG CK P +DF FS L + G+T+ G VT +
Sbjct: 2 DPDPLQDFCVA-DLDGKAVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTEL 59
Query: 83 NVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLI 142
+V + PG NTLGVS R+DFAP G NPPH HPRATEI +V++G L VG + S N L
Sbjct: 60 DVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119
Query: 143 AKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGFGSQNPGVITIANTVFGADPPINPDFL 202
++V+ G+ FV P G++HFQFN+GKT A F SQNPG++ + T+FG+DPPI L
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179
Query: 203 GKAFQLDPQVVKDLQNKFMNGD 224
KA +++ VV+ L++KF G
Sbjct: 180 TKALRVEAGVVELLKSKFAGGS 201
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 129/202 (63%), Gaps = 3/202 (1%)
Query: 24 DPSPLQDICVAIDEPKNAVFVNGKFCKDPKLAKPEDFFFSG-LDQPGDTANRLGFKVTTV 82
DP PLQD CVA D AV VNG CK P +DF FS L + G+T+ G VT +
Sbjct: 2 DPDPLQDFCVA-DLDGKAVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTEL 59
Query: 83 NVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLI 142
+V + PG NTLGVS R+DFAP G NPPH HPRATEI +V++G L VG + S N L
Sbjct: 60 DVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119
Query: 143 AKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGFGSQNPGVITIANTVFGADPPINPDFL 202
++V+ G+ FV P G++HFQFN+GKT A F SQNPG++ + T+FG+DPPI L
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179
Query: 203 GKAFQLDPQVVKDLQNKFMNGD 224
KA +++ VV+ L++KF G
Sbjct: 180 TKALRVEAGVVELLKSKFAGGS 201
>pdb|2PHL|A Chain A, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|B Chain B, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|C Chain C, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|1PHS|A Chain A, The Three-Dimensional Structure Of The Seed Storage
Protein Phaseolin At 3 Angstroms Resolution
Length = 397
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 91 NTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFV----TSNQLNNTLIAKVL 146
N+L V + I+ PH + +A ILVV EG +V V L L
Sbjct: 235 NSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAEL 294
Query: 147 NKGDVFVFPIGMIHFQFNIGKTNAVAFAGFG 177
+K DVFV P + I T+ V F GFG
Sbjct: 295 SKDDVFVIPAA---YPVAIKATSNVNFTGFG 322
>pdb|3EHK|A Chain A, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|B Chain B, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|C Chain C, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|D Chain D, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|E Chain E, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|F Chain F, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3FZ3|A Chain A, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|B Chain B, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|C Chain C, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|D Chain D, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|E Chain E, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|F Chain F, Crystal Structure Of Almond Pru1 Protein
Length = 531
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 10/143 (6%)
Query: 78 KVTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL 137
+++T+N +P L L +SA R F G PH + A ++ V+ G V V N
Sbjct: 377 RISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNEN-- 434
Query: 138 NNTLIAKVLNKGDVFVFPI--GMIHFQFNIGKTNAVAFAGFGSQNPGVITIA-NTVFGAD 194
+ ++ + + +G +F+ P G+I G FA +N + T+A T F
Sbjct: 435 GDAILDQEVQQGQLFIVPQNHGVIQ---QAGNQGFEYFAFKTEENAFINTLAGRTSFLRA 491
Query: 195 PPINPDFLGKAFQLDPQVVKDLQ 217
P + L A+Q+ + + L+
Sbjct: 492 LP--DEVLANAYQISREQARQLK 512
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 78 KVTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL 137
+++T+N +P L G+SA + G PH + A ++ V G V V N
Sbjct: 350 RISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVV--NXQ 407
Query: 138 NNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGFGSQNPGVITIANTVFGADPPI 197
N + L +G + V P + + G + + F + + V + VF A P
Sbjct: 408 GNAVFDGELRRGQLLVVPQNFVVAE--QGGEQGLEYVVFKTHHNAVSSYIKDVFRAIP-- 463
Query: 198 NPDFLGKAFQLDPQVVKDLQ 217
+ L ++ L V+ L+
Sbjct: 464 -SEVLSNSYNLGQSQVRQLK 482
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 32/151 (21%)
Query: 67 QPGDTANRLGFKVTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGT 126
+P G + T N Q P L GV+ ++ G + P P ++++V++G
Sbjct: 18 EPDHRVESEGGLIETWN-SQHPELQCAGVTVSKRTLNRNGLHLPSYSP-YPQMIIVVQGK 75
Query: 127 LYVGFV---------------------TSNQLNNTLIA-KVLNKGDVFVFPIGMIHFQFN 164
+GF + QL ++ + N+GDV V P G+ ++ +N
Sbjct: 76 GAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYN 135
Query: 165 IGKTNAVAFAGFGS--------QNPGVITIA 187
G VA + + QNP V +A
Sbjct: 136 TGDEPVVAISLLDTSNFNNQLDQNPRVFYLA 166
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 78 KVTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL 137
+++T+N +P L G+SA + G PH + A ++ V G V V N
Sbjct: 349 RISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVV--NCQ 406
Query: 138 NNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGFGSQNPGVITIANTVFGADPPI 197
N + L +G + V P + + G + + F + + V + VF A P
Sbjct: 407 GNAVFDGELRRGQLLVVPQNFVVAE--QGGEQGLEYVVFKTHHNAVSSYIKDVFRAIP-- 462
Query: 198 NPDFLGKAFQLDPQVVKDLQ 217
+ L ++ L V+ L+
Sbjct: 463 -SEVLSNSYNLGQSQVRQLK 481
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 32/151 (21%)
Query: 67 QPGDTANRLGFKVTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGT 126
+P G + T N Q P L GV+ ++ G + P P ++++V++G
Sbjct: 17 EPDHRVESEGGLIETWN-SQHPELQCAGVTVSKRTLNRNGLHLPSYSP-YPQMIIVVQGK 74
Query: 127 LYVGFV---------------------TSNQLNNTLIA-KVLNKGDVFVFPIGMIHFQFN 164
+GF + QL ++ + N+GDV V P G+ ++ +N
Sbjct: 75 GAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYN 134
Query: 165 IGKTNAVAFAGFGS--------QNPGVITIA 187
G VA + + QNP V +A
Sbjct: 135 TGDEPVVAISLLDTSNFNNQLDQNPRVFYLA 165
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 35/154 (22%)
Query: 76 GFKVTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN 135
G ++ + ++ PG + ++ A I P H HP A E VL+G + + S
Sbjct: 217 GNELRLASAKEFPG--SFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASE 274
Query: 136 QLNNTLIAKVLNKGDVFVFPIGMIH-------------FQFNIGKTNAVAFAGFGSQNPG 182
+++ L +GDV P G H FN G ++ + + + NP
Sbjct: 275 --GKASVSR-LQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQSIDLSTWLASNPS 331
Query: 183 VITIANTVFGADPPINPDFLGKAFQLDPQVVKDL 216
+ LG FQ+ P++ K L
Sbjct: 332 SV-----------------LGNTFQISPELTKKL 348
>pdb|3D82|A Chain A, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|B Chain B, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|C Chain C, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|D Chain D, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|E Chain E, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
Length = 102
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 106 GQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIH 160
G+ H H E+ +V EGTL + F N L G+ +V P G+ H
Sbjct: 40 GEFVWHEHADTDEVFIVXEGTLQIAFRDQN--------ITLQAGEXYVIPKGVEH 86
>pdb|1MI2|A Chain A, Solution Structure Of Murine Macrophage Inflammatory
Protein-2, Nmr, 20 Structures
pdb|1MI2|B Chain B, Solution Structure Of Murine Macrophage Inflammatory
Protein-2, Nmr, 20 Structures
pdb|3N52|A Chain A, Crystal Structure Analysis Of Mip2
pdb|3N52|B Chain B, Crystal Structure Analysis Of Mip2
pdb|3N52|C Chain C, Crystal Structure Analysis Of Mip2
pdb|3N52|D Chain D, Crystal Structure Analysis Of Mip2
Length = 73
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 99 RIDFA---PYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGD 150
R+DF PP H TE++ L+G V L +I K+LNKG
Sbjct: 17 RVDFKNIQSLSVTPPGPHCAQTEVIATLKGGQKVCLDPEAPLVQKIIQKILNKGK 71
>pdb|3PFN|A Chain A, Crystal Structure Of Human Nad Kinase
pdb|3PFN|B Chain B, Crystal Structure Of Human Nad Kinase
pdb|3PFN|C Chain C, Crystal Structure Of Human Nad Kinase
pdb|3PFN|D Chain D, Crystal Structure Of Human Nad Kinase
Length = 365
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 27 PLQDICVAIDEPKNAVFVNGKFCKDPKLAKPEDF------FFSGLDQPGDTANRLGF 77
P +++C + E V+V K +DP +A E F F + + D +N++ F
Sbjct: 55 PFKELCTHLXEENXIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDF 111
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 78 KVTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL 137
++TTVN +P L L +SAA+ PH + A I+ + G + V N
Sbjct: 306 RLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIV--NDQ 363
Query: 138 NNTLIAKVLNKGDVFVFP 155
++ + L++G + V P
Sbjct: 364 GQSVFDEELSRGQLVVVP 381
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 144 KVLNKGDVFVFPIGMIHFQFNIGKTNAVA 172
+ L +GD+F P G+ H+ +N G VA
Sbjct: 132 RHLREGDIFAMPAGVSHWAYNNGDQPLVA 160
>pdb|2F4P|A Chain A, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
pdb|2F4P|B Chain B, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
pdb|2F4P|C Chain C, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
pdb|2F4P|D Chain D, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
Length = 147
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 102 FAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHF 161
F P + H+HP +IL+V G GF A++L KGDV P ++H+
Sbjct: 55 FEPGARTHWHSHP-GGQILIVTRGK---GFYQERGKP----ARILKKGDVVEIPPNVVHW 106
Query: 162 Q 162
Sbjct: 107 H 107
>pdb|1CAU|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|B Chain B, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|D Chain D, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|F Chain F, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 184
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 110 PHTHPRATEILVVLEGTLYVGFV----------TSNQLNNTLIAKVLNKGDVFVFP 155
PH + RAT ILV EG V V S QL A L++GD+ V P
Sbjct: 56 PHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRR--YAATLSEGDIIVIP 109
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 110 PHTHPRATEILVVLEGTLYVGFV----------TSNQLNNTLIAKVLNKGDVFVFP 155
PH + RAT ILV EG V V S QL A L++GD+ V P
Sbjct: 296 PHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRR--YAATLSEGDIIVIP 349
>pdb|3QFM|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH
pdb|3QFM|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH
pdb|3QFN|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IN COMPLEX
WITH INORGANIC PHOSPHATE
pdb|3QFN|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IN COMPLEX
WITH INORGANIC PHOSPHATE
pdb|3QFO|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IM COMPLEX
WITH AMP
pdb|3QFO|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IM COMPLEX
WITH AMP
Length = 270
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 192 GADPPINPDFLGKAFQLDPQVVKDLQNKFM 221
G +NP +G+ F LD Q+ KDL+ ++M
Sbjct: 183 GGQLIVNPGSIGQPFFLDAQLRKDLRAQYM 212
>pdb|2WGK|A Chain A, Type Ii Baeyer-Villiger Monooxygenase Oxygenating
Constituent Of 3,6-Diketocamphane 1,6 Monooxygenase From
Pseudomonas Putida
pdb|2WGK|B Chain B, Type Ii Baeyer-Villiger Monooxygenase Oxygenating
Constituent Of 3,6-Diketocamphane 1,6 Monooxygenase From
Pseudomonas Putida
Length = 378
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 85 EQIPGLNTLGVSAA----RIDFAPYGQNPPHTHPRATEILV-----VLEGTLYVGFVTSN 135
E IP L +AA I FAP PH HP ++ +LEG ++G
Sbjct: 52 ENIPNPELLIAAAALQTKNIKFAPMAHLLPHQHPAKLATMIGWLSQILEGRYFLGIGAGA 111
Query: 136 QLNNTLIAKVLNKG 149
+ + + N G
Sbjct: 112 YPQASYMHGIRNAG 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.141 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,567,301
Number of Sequences: 62578
Number of extensions: 263279
Number of successful extensions: 520
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 27
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)