Query 027369
Match_columns 224
No_of_seqs 265 out of 1708
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:56:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 100.0 8.7E-28 1.9E-32 219.6 20.0 162 47-219 201-362 (367)
2 PLN00212 glutelin; Provisional 99.9 1.2E-25 2.6E-30 211.0 15.8 147 69-221 322-470 (493)
3 TIGR03404 bicupin_oxalic bicup 99.9 1.5E-23 3.3E-28 191.7 18.1 146 59-219 37-185 (367)
4 PF00190 Cupin_1: Cupin; Inte 99.9 9.7E-24 2.1E-28 169.1 13.2 130 71-213 9-143 (144)
5 smart00835 Cupin_1 Cupin. This 99.9 3.8E-20 8.2E-25 148.6 17.7 135 73-213 8-145 (146)
6 PLN00212 glutelin; Provisional 99.9 3.6E-20 7.7E-25 174.2 19.5 141 74-219 60-249 (493)
7 COG2140 Thermophilic glucose-6 99.8 2.3E-18 5E-23 144.9 13.2 151 56-221 49-201 (209)
8 PF07883 Cupin_2: Cupin domain 99.5 3.1E-13 6.6E-18 94.4 8.2 70 99-176 2-71 (71)
9 COG1917 Uncharacterized conser 99.4 4.7E-12 1E-16 99.5 11.2 86 85-178 33-118 (131)
10 PRK13290 ectC L-ectoine syntha 99.3 1.7E-11 3.7E-16 96.6 11.7 81 93-183 33-114 (125)
11 COG0662 {ManC} Mannose-6-phosp 99.3 1.8E-11 3.9E-16 96.4 11.4 82 93-182 34-115 (127)
12 PRK04190 glucose-6-phosphate i 99.3 6.4E-11 1.4E-15 99.6 13.7 88 89-179 62-157 (191)
13 COG3837 Uncharacterized conser 99.2 1.5E-10 3.2E-15 93.5 9.4 92 86-187 35-129 (161)
14 PRK11171 hypothetical protein; 99.1 1.7E-09 3.6E-14 95.3 14.0 108 51-176 27-135 (266)
15 TIGR01479 GMP_PMI mannose-1-ph 99.1 6.7E-10 1.5E-14 104.9 11.7 78 94-179 375-452 (468)
16 PRK09943 DNA-binding transcrip 99.1 9.9E-10 2.2E-14 91.3 11.2 76 93-177 105-181 (185)
17 COG4101 Predicted mannose-6-ph 99.1 1.4E-09 3.1E-14 84.2 9.8 85 94-183 45-129 (142)
18 PRK15460 cpsB mannose-1-phosph 99.1 1.1E-09 2.3E-14 103.8 11.2 77 94-178 384-460 (478)
19 PF01050 MannoseP_isomer: Mann 99.0 5.5E-09 1.2E-13 84.9 10.4 76 93-176 61-136 (151)
20 TIGR03214 ura-cupin putative a 98.9 8.7E-09 1.9E-13 90.5 10.7 75 94-176 57-132 (260)
21 TIGR03214 ura-cupin putative a 98.9 1.1E-08 2.4E-13 89.9 10.0 73 94-175 178-251 (260)
22 PRK11171 hypothetical protein; 98.8 1.8E-08 3.9E-13 88.7 9.8 74 94-176 183-257 (266)
23 PF02041 Auxin_BP: Auxin bindi 98.7 2.8E-07 6.1E-12 74.1 11.7 100 87-189 38-139 (167)
24 PF06560 GPI: Glucose-6-phosph 98.6 4E-07 8.7E-12 76.0 11.2 89 90-178 45-146 (182)
25 PF11699 CENP-C_C: Mif2/CENP-C 98.5 7E-07 1.5E-11 65.8 8.9 72 94-174 11-83 (85)
26 TIGR03037 anthran_nbaC 3-hydro 98.5 7.8E-07 1.7E-11 72.7 9.7 60 103-167 36-95 (159)
27 PRK13264 3-hydroxyanthranilate 98.5 6.4E-07 1.4E-11 74.3 9.3 66 103-175 42-107 (177)
28 TIGR02451 anti_sig_ChrR anti-s 98.4 9.4E-07 2E-11 75.7 8.4 72 95-179 127-198 (215)
29 PF12973 Cupin_7: ChrR Cupin-l 98.4 1.1E-06 2.4E-11 65.0 7.7 66 94-174 23-88 (91)
30 PF02311 AraC_binding: AraC-li 98.3 2.7E-06 5.8E-11 64.8 7.9 63 104-175 12-74 (136)
31 PF03079 ARD: ARD/ARD' family; 98.2 1.4E-05 3E-10 65.4 10.8 71 107-182 84-154 (157)
32 PRK15457 ethanolamine utilizat 98.2 1.4E-05 3E-10 68.9 9.9 69 95-176 157-225 (233)
33 TIGR02272 gentisate_1_2 gentis 98.1 7.8E-06 1.7E-10 74.3 7.1 76 94-177 80-155 (335)
34 PRK10371 DNA-binding transcrip 98.0 1.6E-05 3.5E-10 70.9 8.1 61 98-167 29-89 (302)
35 COG3435 Gentisate 1,2-dioxygen 98.0 1.2E-05 2.7E-10 71.4 6.1 115 55-178 44-167 (351)
36 PF05899 Cupin_3: Protein of u 97.9 4.9E-05 1.1E-09 54.3 6.5 58 95-162 7-64 (74)
37 COG1791 Uncharacterized conser 97.9 0.00011 2.5E-09 60.4 9.4 73 109-186 89-161 (181)
38 PF14499 DUF4437: Domain of un 97.9 2.7E-05 5.9E-10 68.1 6.2 73 92-172 33-105 (251)
39 PRK10296 DNA-binding transcrip 97.9 8.4E-05 1.8E-09 64.9 9.3 52 105-165 33-84 (278)
40 PF05523 FdtA: WxcM-like, C-te 97.9 0.00017 3.7E-09 57.1 9.9 96 76-179 15-112 (131)
41 PRK13501 transcriptional activ 97.8 7.8E-05 1.7E-09 65.6 7.5 63 94-167 19-81 (290)
42 PRK13500 transcriptional activ 97.8 9.7E-05 2.1E-09 66.1 8.1 55 104-167 57-111 (312)
43 TIGR02297 HpaA 4-hydroxyphenyl 97.8 7.3E-05 1.6E-09 65.3 6.9 57 105-169 33-89 (287)
44 COG4297 Uncharacterized protei 97.7 6.1E-05 1.3E-09 60.0 5.6 66 105-176 52-118 (163)
45 KOG2107 Uncharacterized conser 97.7 8.7E-05 1.9E-09 60.7 5.4 55 108-166 86-140 (179)
46 COG3257 GlxB Uncharacterized p 97.6 0.00059 1.3E-08 58.4 9.5 74 96-177 62-136 (264)
47 PF06339 Ectoine_synth: Ectoin 97.6 0.0014 3.1E-08 51.4 10.7 83 91-182 31-113 (126)
48 TIGR02272 gentisate_1_2 gentis 97.5 0.0003 6.4E-09 64.1 7.5 86 75-173 231-317 (335)
49 PRK13502 transcriptional activ 97.5 0.00037 7.9E-09 60.9 7.8 56 103-167 26-81 (282)
50 PF06052 3-HAO: 3-hydroxyanthr 97.5 0.0016 3.5E-08 52.6 10.6 71 99-176 37-107 (151)
51 PRK13503 transcriptional activ 97.5 0.00024 5.2E-09 61.7 6.1 53 104-165 24-76 (278)
52 PF06249 EutQ: Ethanolamine ut 97.2 0.0012 2.5E-08 53.8 6.3 58 95-163 77-134 (152)
53 COG1898 RfbC dTDP-4-dehydrorha 97.1 0.0059 1.3E-07 50.7 10.1 72 104-175 54-131 (173)
54 PF05995 CDO_I: Cysteine dioxy 97.1 0.013 2.8E-07 48.6 12.0 86 94-179 74-165 (175)
55 COG4766 EutQ Ethanolamine util 96.9 0.0082 1.8E-07 48.8 9.0 66 95-173 100-165 (176)
56 COG3450 Predicted enzyme of th 96.8 0.0032 7E-08 49.0 5.4 59 95-163 45-103 (116)
57 TIGR01221 rmlC dTDP-4-dehydror 96.7 0.017 3.6E-07 48.1 9.4 80 103-183 52-139 (176)
58 PF00908 dTDP_sugar_isom: dTDP 96.6 0.033 7.2E-07 46.3 11.1 81 103-183 51-139 (176)
59 PF13621 Cupin_8: Cupin-like d 96.5 0.016 3.5E-07 49.0 8.5 72 97-169 132-236 (251)
60 PF08007 Cupin_4: Cupin superf 95.6 0.17 3.6E-06 45.7 11.2 70 96-166 114-200 (319)
61 COG3435 Gentisate 1,2-dioxygen 95.6 0.036 7.9E-07 49.8 6.6 89 74-174 241-330 (351)
62 PF02678 Pirin: Pirin; InterP 95.6 0.055 1.2E-06 41.5 6.7 62 105-173 39-103 (107)
63 PF07385 DUF1498: Protein of u 95.5 0.12 2.5E-06 44.6 9.0 77 100-178 92-188 (225)
64 PF04209 HgmA: homogentisate 1 95.4 0.1 2.2E-06 49.1 9.2 56 109-174 139-194 (424)
65 PF13759 2OG-FeII_Oxy_5: Putat 95.2 0.068 1.5E-06 39.9 6.2 74 100-173 5-98 (101)
66 PF14499 DUF4437: Domain of un 95.1 0.026 5.6E-07 49.6 3.9 76 95-178 171-246 (251)
67 COG1741 Pirin-related protein 94.9 0.088 1.9E-06 46.9 7.0 60 99-165 48-109 (276)
68 PF12852 Cupin_6: Cupin 94.9 0.14 3E-06 42.1 7.8 44 117-166 36-79 (186)
69 PRK05341 homogentisate 1,2-dio 94.7 0.29 6.3E-06 46.1 10.1 58 108-174 146-203 (438)
70 TIGR01015 hmgA homogentisate 1 94.5 0.39 8.4E-06 45.2 10.3 56 108-173 140-195 (429)
71 PLN02658 homogentisate 1,2-dio 94.4 0.43 9.2E-06 45.0 10.3 57 109-174 140-196 (435)
72 PF02373 JmjC: JmjC domain, hy 94.1 0.1 2.2E-06 39.0 4.8 30 139-168 78-107 (114)
73 TIGR02466 conserved hypothetic 94.1 0.27 5.8E-06 41.8 7.7 80 97-177 98-197 (201)
74 PF05118 Asp_Arg_Hydrox: Aspar 93.8 0.23 4.9E-06 40.6 6.6 81 85-173 68-155 (163)
75 PRK12335 tellurite resistance 93.7 0.31 6.8E-06 43.0 7.9 62 103-166 19-82 (287)
76 COG3806 ChrR Transcriptional a 93.6 0.25 5.3E-06 42.0 6.5 88 74-179 112-199 (216)
77 PRK10572 DNA-binding transcrip 93.5 0.26 5.6E-06 43.1 6.9 44 116-167 49-92 (290)
78 KOG3706 Uncharacterized conser 92.6 0.09 1.9E-06 50.0 2.8 90 74-164 285-403 (629)
79 PF06865 DUF1255: Protein of u 92.2 2.4 5.2E-05 31.8 9.5 64 101-175 29-92 (94)
80 PF07847 DUF1637: Protein of u 92.1 0.79 1.7E-05 39.0 7.7 90 89-179 38-144 (200)
81 PRK09685 DNA-binding transcrip 91.8 1 2.2E-05 39.4 8.5 66 94-167 44-114 (302)
82 COG3822 ABC-type sugar transpo 91.8 0.82 1.8E-05 38.7 7.3 79 99-179 90-188 (225)
83 COG3508 HmgA Homogentisate 1,2 91.7 2.1 4.5E-05 39.5 10.2 72 93-173 123-194 (427)
84 COG5553 Predicted metal-depend 91.6 0.85 1.8E-05 37.6 6.9 78 95-177 73-156 (191)
85 PRK10579 hypothetical protein; 91.6 4.6 0.0001 30.3 10.7 48 111-164 36-83 (94)
86 KOG3995 3-hydroxyanthranilate 91.3 0.43 9.2E-06 41.0 5.1 57 103-164 41-97 (279)
87 PRK00924 5-keto-4-deoxyuronate 90.9 1.8 3.8E-05 38.7 8.9 82 94-180 174-261 (276)
88 PF05726 Pirin_C: Pirin C-term 89.7 2.1 4.6E-05 32.1 7.4 66 98-174 2-67 (104)
89 KOG2757 Mannose-6-phosphate is 89.6 1.9 4E-05 40.0 8.0 75 94-177 332-406 (411)
90 PRK15131 mannose-6-phosphate i 89.5 2.4 5.3E-05 39.5 9.0 58 95-163 321-378 (389)
91 PF09313 DUF1971: Domain of un 89.3 4.2 9.1E-05 29.6 8.3 64 104-168 12-76 (82)
92 PF11142 DUF2917: Protein of u 87.6 3.8 8.3E-05 28.2 6.9 56 101-164 3-58 (63)
93 PF04962 KduI: KduI/IolB famil 87.3 12 0.00026 33.0 11.5 97 77-180 135-247 (261)
94 TIGR00218 manA mannose-6-phosp 86.9 4.2 9.2E-05 36.3 8.6 59 94-163 234-292 (302)
95 PRK11753 DNA-binding transcrip 86.3 7.3 0.00016 31.9 9.2 54 98-154 21-74 (211)
96 PRK09391 fixK transcriptional 86.2 7.6 0.00017 32.8 9.5 63 94-159 35-97 (230)
97 PLN02288 mannose-6-phosphate i 86.1 2.1 4.5E-05 40.1 6.4 58 94-158 333-390 (394)
98 PF00027 cNMP_binding: Cyclic 85.5 2.3 5E-05 29.3 5.1 48 101-152 3-51 (91)
99 COG2850 Uncharacterized conser 85.3 2.2 4.9E-05 39.4 6.0 78 87-167 113-204 (383)
100 COG3257 GlxB Uncharacterized p 85.2 3.8 8.1E-05 35.5 6.9 69 92-169 179-248 (264)
101 PF14525 AraC_binding_2: AraC- 82.7 11 0.00025 29.3 8.6 42 118-167 57-98 (172)
102 PRK13918 CRP/FNR family transc 81.5 6.9 0.00015 31.9 7.1 54 99-154 8-62 (202)
103 smart00100 cNMP Cyclic nucleot 80.8 9.1 0.0002 27.0 6.8 55 98-155 18-72 (120)
104 cd00038 CAP_ED effector domain 79.5 7.9 0.00017 27.3 6.1 53 98-153 18-70 (115)
105 COG3123 Uncharacterized protei 79.4 7.2 0.00016 28.8 5.6 41 115-161 40-80 (94)
106 PRK10402 DNA-binding transcrip 75.4 9.7 0.00021 32.0 6.3 53 99-154 33-85 (226)
107 COG1482 ManA Phosphomannose is 72.0 25 0.00053 32.0 8.3 58 94-162 241-298 (312)
108 PLN02868 acyl-CoA thioesterase 71.2 15 0.00032 34.2 7.0 53 98-154 32-84 (413)
109 PHA02984 hypothetical protein; 69.6 30 0.00066 30.8 8.1 45 117-165 92-138 (286)
110 PF07172 GRP: Glycine rich pro 69.3 6.2 0.00013 29.5 3.3 9 1-9 1-9 (95)
111 PF04622 ERG2_Sigma1R: ERG2 an 67.1 22 0.00047 30.7 6.6 91 105-210 111-204 (216)
112 PF13464 DUF4115: Domain of un 66.8 41 0.00089 23.5 7.3 53 122-178 4-56 (77)
113 COG0664 Crp cAMP-binding prote 64.8 26 0.00056 28.0 6.5 57 97-156 23-79 (214)
114 TIGR00218 manA mannose-6-phosp 63.6 3.9 8.5E-05 36.5 1.5 20 142-161 151-170 (302)
115 KOG2130 Phosphatidylserine-spe 63.4 12 0.00027 34.2 4.6 46 139-184 260-305 (407)
116 PHA02890 hypothetical protein; 63.1 46 0.001 29.5 7.9 44 117-164 91-136 (278)
117 KOG1417 Homogentisate 1,2-diox 62.1 97 0.0021 28.3 9.9 63 108-178 147-209 (446)
118 PRK00924 5-keto-4-deoxyuronate 62.1 53 0.0012 29.4 8.3 50 116-173 73-125 (276)
119 PRK15186 AraC family transcrip 60.1 32 0.00069 30.7 6.6 46 117-169 39-84 (291)
120 PRK11161 fumarate/nitrate redu 59.4 37 0.00079 28.3 6.7 52 100-154 40-91 (235)
121 TIGR03697 NtcA_cyano global ni 57.8 27 0.00058 28.0 5.4 36 116-153 11-46 (193)
122 PF04962 KduI: KduI/IolB famil 55.9 49 0.0011 29.2 7.0 78 79-167 14-99 (261)
123 COG1482 ManA Phosphomannose is 55.7 10 0.00022 34.5 2.7 20 143-162 159-178 (312)
124 PRK15131 mannose-6-phosphate i 55.5 13 0.00027 34.8 3.4 26 141-167 236-261 (389)
125 KOG3416 Predicted nucleic acid 54.6 48 0.001 26.3 5.9 66 87-164 11-80 (134)
126 PRK03606 ureidoglycolate hydro 52.7 1.2E+02 0.0026 24.9 8.3 55 109-163 72-128 (162)
127 PRK09392 ftrB transcriptional 50.3 47 0.001 27.7 5.9 52 99-154 32-83 (236)
128 PF04115 Ureidogly_hydro: Urei 49.8 1E+02 0.0023 25.0 7.6 66 109-175 73-143 (165)
129 COG2731 EbgC Beta-galactosidas 48.7 69 0.0015 26.1 6.3 61 107-167 60-137 (154)
130 PRK10202 ebgC cryptic beta-D-g 45.8 75 0.0016 25.4 6.1 55 109-163 58-127 (149)
131 PF13640 2OG-FeII_Oxy_3: 2OG-F 45.8 59 0.0013 23.2 5.1 66 100-165 4-86 (100)
132 COG3718 IolB Uncharacterized e 44.9 1.9E+02 0.0041 25.5 8.6 85 79-167 16-102 (270)
133 KOG4281 Uncharacterized conser 44.5 10 0.00022 32.7 0.9 43 91-133 71-113 (236)
134 KOG2131 Uncharacterized conser 44.0 25 0.00055 32.8 3.4 72 95-168 196-294 (427)
135 PRK14585 pgaD putative PGA bio 42.1 29 0.00063 27.8 3.0 25 195-219 88-112 (137)
136 PF06719 AraC_N: AraC-type tra 41.3 1.2E+02 0.0027 24.1 6.7 51 117-175 24-77 (155)
137 TIGR00022 uncharacterized prot 41.2 83 0.0018 24.8 5.6 54 108-161 61-132 (142)
138 PLN03192 Voltage-dependent pot 40.9 59 0.0013 33.1 5.8 52 97-152 397-448 (823)
139 PF13994 PgaD: PgaD-like prote 40.4 33 0.00073 27.0 3.2 24 196-219 100-123 (138)
140 PRK02290 3-dehydroquinate synt 39.8 1.1E+02 0.0023 28.4 6.7 85 74-164 250-336 (344)
141 PRK14584 hmsS hemin storage sy 39.3 35 0.00076 27.8 3.2 25 195-219 97-121 (153)
142 PF02787 CPSase_L_D3: Carbamoy 37.0 33 0.00072 26.7 2.6 26 196-221 72-97 (123)
143 PF04074 DUF386: Domain of unk 36.4 1.7E+02 0.0036 23.2 6.8 56 108-163 61-134 (153)
144 COG3717 KduI 5-keto 4-deoxyuro 36.1 1.6E+02 0.0035 26.0 6.8 85 91-180 173-263 (278)
145 PF13348 Y_phosphatase3C: Tyro 35.2 37 0.0008 23.0 2.4 24 197-220 44-67 (68)
146 PF01959 DHQS: 3-dehydroquinat 35.1 1.3E+02 0.0029 27.8 6.6 86 74-165 260-347 (354)
147 PF14801 GCD14_N: tRNA methylt 34.9 40 0.00087 22.7 2.4 38 128-168 11-48 (54)
148 KOG0498 K+-channel ERG and rel 34.7 65 0.0014 32.7 4.9 49 100-152 445-493 (727)
149 COG1741 Pirin-related protein 34.6 3.3E+02 0.0072 24.2 11.9 43 86-130 165-207 (276)
150 PF05721 PhyH: Phytanoyl-CoA d 33.0 76 0.0017 25.0 4.3 30 140-169 178-208 (211)
151 PF06172 Cupin_5: Cupin superf 31.7 2.6E+02 0.0057 22.2 11.9 75 95-173 41-122 (139)
152 PF10365 DUF2436: Domain of un 30.8 67 0.0015 26.0 3.4 37 25-63 105-141 (161)
153 KOG2132 Uncharacterized conser 29.8 51 0.0011 30.3 2.9 80 85-165 240-349 (355)
154 COG3718 IolB Uncharacterized e 29.4 2.5E+02 0.0055 24.8 7.0 56 101-158 159-229 (270)
155 PF04202 Mfp-3: Foot protein 3 29.3 52 0.0011 23.1 2.3 25 1-26 1-25 (71)
156 PLN02288 mannose-6-phosphate i 28.4 39 0.00084 31.7 2.0 20 143-162 252-271 (394)
157 PRK13395 ureidoglycolate hydro 28.3 3.4E+02 0.0074 22.4 7.9 66 109-174 72-140 (171)
158 PHA00672 hypothetical protein 28.2 3.1E+02 0.0068 21.9 7.1 68 94-171 46-113 (152)
159 TIGR02408 ectoine_ThpD ectoine 26.9 80 0.0017 27.6 3.7 37 143-179 212-250 (277)
160 KOG0500 Cyclic nucleotide-gate 26.3 1.3E+02 0.0028 29.3 5.0 46 101-152 334-379 (536)
161 PF13384 HTH_23: Homeodomain-l 26.0 76 0.0016 19.8 2.6 26 196-221 17-42 (50)
162 COG1188 Ribosome-associated he 25.0 29 0.00062 26.4 0.4 29 29-62 28-56 (100)
163 PF08194 DIM: DIM protein; In 22.5 79 0.0017 19.5 1.9 10 40-50 24-33 (36)
164 PRK15194 type-1 fimbrial prote 22.0 1.5E+02 0.0032 24.2 4.2 27 1-27 1-27 (185)
165 KOG1356 Putative transcription 21.1 36 0.00079 34.9 0.4 63 102-167 762-824 (889)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.96 E-value=8.7e-28 Score=219.59 Aligned_cols=162 Identities=19% Similarity=0.242 Sum_probs=144.9
Q ss_pred cccCCCCCCCCCCeeeecCCCCCCccCCCCeEEEEecccCcCcccccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecE
Q 027369 47 KFCKDPKLAKPEDFFFSGLDQPGDTANRLGFKVTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGT 126 (224)
Q Consensus 47 ~~ck~p~~v~~~df~f~~l~~~~~~~~~~g~~v~~~~~~~~P~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~ 126 (224)
.+-+.+..-.++.|+|+....++.. ..|++++.+++.+||+++ ++++++++++||++.++|||++++|+.||++|+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~p~~--~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~ 276 (367)
T TIGR03404 201 EAVTGPAGEVPGPFTYHLSEQKPKQ--VPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQ 276 (367)
T ss_pred ccCcCCCCCCCccEEEEhhhCCcee--cCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEE
Confidence 3445566666778999998887743 567789999999999988 589999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEcCCCCceeeechhhhcCCCCCCHHHHHHhc
Q 027369 127 LYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGFGSQNPGVITIANTVFGADPPINPDFLGKAF 206 (224)
Q Consensus 127 ~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~pg~~~i~~~lf~~~p~~~~~vLa~af 206 (224)
+++++.+++ ++..++.+++||+++||+|..|+++|.|+++++++++|++..++.+.+++|+.. +|++||+++|
T Consensus 277 ~~~~v~d~~---g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l~~----~p~~vl~~~~ 349 (367)
T TIGR03404 277 ARMTVFAAG---GNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWLAL----TPPQLVAAHL 349 (367)
T ss_pred EEEEEEecC---CcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHHhh----CCHHHHHHHh
Confidence 999998776 455578999999999999999999999999999999999999999999999743 9999999999
Q ss_pred CCCHHHHHHHhhh
Q 027369 207 QLDPQVVKDLQNK 219 (224)
Q Consensus 207 ~~~~~~v~~l~~~ 219 (224)
+++++++++|++.
T Consensus 350 ~~~~~~~~~l~~~ 362 (367)
T TIGR03404 350 NLDDEVIDSLKKE 362 (367)
T ss_pred CcCHHHHHhcccc
Confidence 9999999999975
No 2
>PLN00212 glutelin; Provisional
Probab=99.93 E-value=1.2e-25 Score=211.01 Aligned_cols=147 Identities=23% Similarity=0.323 Sum_probs=124.8
Q ss_pred CCccCCCCeEEEEecccCcCcccccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecC
Q 027369 69 GDTANRLGFKVTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNK 148 (224)
Q Consensus 69 ~~~~~~~g~~v~~~~~~~~P~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~ 148 (224)
.++.++.+++++.+++.+||+|+++|+|+.+++|.||+|++||||++|+|++||++|+++++|+++++ ++++..+|++
T Consensus 322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g--~~vf~~~L~~ 399 (493)
T PLN00212 322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNG--KTVFNGVLRP 399 (493)
T ss_pred cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCC--CEEEEEEEcC
Confidence 34557889999999999999999999999999999999999999999999999999999999998775 8899999999
Q ss_pred CCEEEEcCCCeeEEEeCCCCcEEEEEEEcCCCCceeeec--hhhhcCCCCCCHHHHHHhcCCCHHHHHHHhhhcc
Q 027369 149 GDVFVFPIGMIHFQFNIGKTNAVAFAGFGSQNPGVITIA--NTVFGADPPINPDFLGKAFQLDPQVVKDLQNKFM 221 (224)
Q Consensus 149 GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~pg~~~i~--~~lf~~~p~~~~~vLa~af~~~~~~v~~l~~~~~ 221 (224)
||+|+||+|++|.... +++...+++...+.++-...++ .++|+. +|.+||+++|+++.+++++||..+.
T Consensus 400 GdvfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~a---lp~eVla~Af~is~eea~~lk~n~~ 470 (493)
T PLN00212 400 GQLLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFRA---LPVDVIANAYRISREEARRLKNNRG 470 (493)
T ss_pred CCEEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHHh---CCHHHHHHHcCCCHHHHHHHHhccc
Confidence 9999999999996543 3444555544444443333332 578884 9999999999999999999998864
No 3
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.91 E-value=1.5e-23 Score=191.70 Aligned_cols=146 Identities=21% Similarity=0.266 Sum_probs=124.8
Q ss_pred CeeeecCCCCCCccCCCCeEEEEecccCcCcccccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCC
Q 027369 59 DFFFSGLDQPGDTANRLGFKVTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLN 138 (224)
Q Consensus 59 df~f~~l~~~~~~~~~~g~~v~~~~~~~~P~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~ 138 (224)
-|.|+...++. ..|++++.++..+||++++ +++.++++.||++.++|||. +.|++||++|++++++++++
T Consensus 37 ~~~~~~~~~~~----~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d~~--- 106 (367)
T TIGR03404 37 KWSFSDSHNRL----ENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVDEN--- 106 (367)
T ss_pred eeeeccccCcc----ccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEcCC---
Confidence 45565444332 3577899999999999996 69999999999999999995 78999999999999999876
Q ss_pred CeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEcCCC---CceeeechhhhcCCCCCCHHHHHHhcCCCHHHHHH
Q 027369 139 NTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGFGSQN---PGVITIANTVFGADPPINPDFLGKAFQLDPQVVKD 215 (224)
Q Consensus 139 ~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~---pg~~~i~~~lf~~~p~~~~~vLa~af~~~~~~v~~ 215 (224)
++.+.+.|++||+++||+|.+|+++|.+ +.+.++++|++.. +..+.++.+ |++ +|++||+++|+++++++++
T Consensus 107 g~~~~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~-l~~---~p~~Vla~~f~l~~~~~~~ 181 (367)
T TIGR03404 107 GRNYIDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDW-LAH---TPKDVLAKNFGVPESAFDN 181 (367)
T ss_pred CcEEEeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHH-HHh---CCHHHHHHHhCCCHHHHHh
Confidence 7877789999999999999999999995 4577887887753 557778777 474 9999999999999999999
Q ss_pred Hhhh
Q 027369 216 LQNK 219 (224)
Q Consensus 216 l~~~ 219 (224)
|++.
T Consensus 182 l~~~ 185 (367)
T TIGR03404 182 LPLK 185 (367)
T ss_pred cccc
Confidence 9975
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.91 E-value=9.7e-24 Score=169.09 Aligned_cols=130 Identities=34% Similarity=0.494 Sum_probs=107.5
Q ss_pred ccCCCCeEEEEecccCcCccccc-ceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCC--CCeeEEEE--
Q 027369 71 TANRLGFKVTTVNVEQIPGLNTL-GVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL--NNTLIAKV-- 145 (224)
Q Consensus 71 ~~~~~g~~v~~~~~~~~P~L~~l-gis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~--~~~~~~~~-- 145 (224)
..+..+++++.++..++|++.++ ++++.++.++||++.+|||| ++.|+.||++|+++++++.+++. ..+...++
T Consensus 9 ~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~ 87 (144)
T PF00190_consen 9 RVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVR 87 (144)
T ss_dssp EEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEE
T ss_pred cccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceee
Confidence 33556778999999999966665 45666677799999999999 89999999999999999987510 01345566
Q ss_pred ecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEcCCCCceeeechhhhcCCCCCCHHHHHHhcCCCHHHH
Q 027369 146 LNKGDVFVFPIGMIHFQFNIGKTNAVAFAGFGSQNPGVITIANTVFGADPPINPDFLGKAFQLDPQVV 213 (224)
Q Consensus 146 L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~pg~~~i~~~lf~~~p~~~~~vLa~af~~~~~~v 213 (224)
+++||++++|+|.+||+.|.|+++...+.+|.+.+|..+ +|+++++++|+++.+++
T Consensus 88 l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 88 LKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp EETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHH
T ss_pred eecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcC
Confidence 999999999999999999999888988889988877664 89999999999999875
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.86 E-value=3.8e-20 Score=148.59 Aligned_cols=135 Identities=39% Similarity=0.626 Sum_probs=115.9
Q ss_pred CCCCeEEEEecccCcCcccccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEE
Q 027369 73 NRLGFKVTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 73 ~~~g~~v~~~~~~~~P~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~ 152 (224)
+..|++++.++..++|.+++.++.+.+++++||+..++|+|+++.|++||++|++.+.+.++.+ ++.+...+++||++
T Consensus 8 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~--~~~~~~~l~~GD~~ 85 (146)
T smart00835 8 SNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNG--NKVYDARLREGDVF 85 (146)
T ss_pred cCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCC--CeEEEEEecCCCEE
Confidence 4556679999999999999999999999999999999999998899999999999999876532 45667999999999
Q ss_pred EEcCCCeeEEEeCCCCcEEEEEEEcCCCCcee-ee--chhhhcCCCCCCHHHHHHhcCCCHHHH
Q 027369 153 VFPIGMIHFQFNIGKTNAVAFAGFGSQNPGVI-TI--ANTVFGADPPINPDFLGKAFQLDPQVV 213 (224)
Q Consensus 153 v~P~G~~H~~~N~G~~~a~~i~~~~s~~pg~~-~i--~~~lf~~~p~~~~~vLa~af~~~~~~v 213 (224)
++|+|..|+..|.++++++++ ++.+++|..- .+ ..++|. ++++++++++|+++++++
T Consensus 86 ~ip~g~~H~~~n~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 86 VVPQGHPHFQVNSGDENLEFV-AFNTNDPNRRFFLAGRNSVLR---GLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred EECCCCEEEEEcCCCCCEEEE-EEecCCCCceeEeecccchhh---cCCHHHHHHHhCcChHHc
Confidence 999999999999999999998 5766776542 12 235677 599999999999999875
No 6
>PLN00212 glutelin; Provisional
Probab=99.85 E-value=3.6e-20 Score=174.19 Aligned_cols=141 Identities=22% Similarity=0.338 Sum_probs=115.4
Q ss_pred CCCeEEEEecccCcCcccccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecC-CC---------------
Q 027369 74 RLGFKVTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN-QL--------------- 137 (224)
Q Consensus 74 ~~g~~v~~~~~~~~P~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~-~~--------------- 137 (224)
.-|+ ++.....+-+.|.+.|+++.|++++|+|+++||+| ++++++||++|++.++++.++ ++
T Consensus 60 se~G-~~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~ 137 (493)
T PLN00212 60 SEAG-VTEYFDEKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQS 137 (493)
T ss_pred ccCc-eeeecCCCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccc
Confidence 4455 55555578999999999999999999999999999 699999999999999999642 00
Q ss_pred ------CCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEcCCC--------Cceeeech---------------
Q 027369 138 ------NNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGFGSQN--------PGVITIAN--------------- 188 (224)
Q Consensus 138 ------~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~--------pg~~~i~~--------------- 188 (224)
+.....+.|++||+++||+|++||++|.|++|++++++++..| +..+.+++
T Consensus 138 ~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~~ 217 (493)
T PLN00212 138 QSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIEQ 217 (493)
T ss_pred cccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccccc
Confidence 0011126899999999999999999999999999888886443 22344443
Q ss_pred ----hhhcCCCCCCHHHHHHhcCCCHHHHHHHhhh
Q 027369 189 ----TVFGADPPINPDFLGKAFQLDPQVVKDLQNK 219 (224)
Q Consensus 189 ----~lf~~~p~~~~~vLa~af~~~~~~v~~l~~~ 219 (224)
++|+ +++.++|+.||+++.++++||+..
T Consensus 218 ~~~~nifs---GF~~e~La~Afnv~~e~~~klq~~ 249 (493)
T PLN00212 218 HSGQNIFS---GFSTELLSEALGINAQVAKRLQSQ 249 (493)
T ss_pred cccCchhh---cCCHHHHHHHHCCCHHHHHHHhcc
Confidence 3887 699999999999999999999865
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.78 E-value=2.3e-18 Score=144.92 Aligned_cols=151 Identities=22% Similarity=0.292 Sum_probs=133.4
Q ss_pred CCCCeeeecCCCCCCccCCCCeEEEEecccCcCcccccceEEEEEEEcCCCcCCceeCCCCcE--EEEEEecEEEEEEEe
Q 027369 56 KPEDFFFSGLDQPGDTANRLGFKVTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATE--ILVVLEGTLYVGFVT 133 (224)
Q Consensus 56 ~~~df~f~~l~~~~~~~~~~g~~v~~~~~~~~P~L~~lgis~~rv~l~pgg~~ppH~Hp~a~E--i~yVl~G~~~v~~~~ 133 (224)
..+||+|..+.+.+... |+.+.......+|+- +...+.+.||++...||||+++| |.||++|++++.+-.
T Consensus 49 ~~~~~~yel~~~~~~~~---~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~ 120 (209)
T COG2140 49 KEDDFVYELLESEPGER---GGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK 120 (209)
T ss_pred CCCceEEEeeccccccc---CCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence 67899999877655442 888999999999987 45778899999999999999999 999999999999888
Q ss_pred cCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEcCCCCceeeechhhhcCCCCCCHHHHHHhcCCCHHHH
Q 027369 134 SNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGFGSQNPGVITIANTVFGADPPINPDFLGKAFQLDPQVV 213 (224)
Q Consensus 134 ~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~pg~~~i~~~lf~~~p~~~~~vLa~af~~~~~~v 213 (224)
++ ++..+..+++||++++|++..|+..|+|++|.+++..+....+....+..++++ .+..+++..++.+....
T Consensus 121 ~~---G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~ 193 (209)
T COG2140 121 PE---GEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLGG----MPPVLVENGLNKNPKYV 193 (209)
T ss_pred CC---CcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhcc----CCceeeccccccCcccc
Confidence 76 567789999999999999999999999999999999999998888888888776 77888999999898888
Q ss_pred HHHhhhcc
Q 027369 214 KDLQNKFM 221 (224)
Q Consensus 214 ~~l~~~~~ 221 (224)
|.++.++.
T Consensus 194 D~p~~~~~ 201 (209)
T COG2140 194 DVPRIKFA 201 (209)
T ss_pred cCcccccc
Confidence 88877765
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.46 E-value=3.1e-13 Score=94.41 Aligned_cols=70 Identities=29% Similarity=0.428 Sum_probs=62.6
Q ss_pred EEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEE
Q 027369 99 RIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGF 176 (224)
Q Consensus 99 rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~ 176 (224)
+++++||+..++|+|+...|++||++|++++.+ + ++ ...+++||.+++|+|..|...|.+++++++++++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~-----~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-D-----GE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE-T-----TE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE-c-----cE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 578999999999999976699999999999984 3 22 5899999999999999999999999999998765
No 9
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.39 E-value=4.7e-12 Score=99.54 Aligned_cols=86 Identities=28% Similarity=0.366 Sum_probs=72.9
Q ss_pred cCcCcccccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEe
Q 027369 85 EQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN 164 (224)
Q Consensus 85 ~~~P~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N 164 (224)
.-.+...+..+++.++.++||+..+.|+||...+.+||++|++++++..+ .+.+++||++++|+|..|+..|
T Consensus 33 ~~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~--------~~~l~~Gd~i~ip~g~~H~~~a 104 (131)
T COG1917 33 RVLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGE--------KKELKAGDVIIIPPGVVHGLKA 104 (131)
T ss_pred eeccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCC--------ceEecCCCEEEECCCCeeeecc
Confidence 34454556678899999999999999999966899999999999998632 4899999999999999999999
Q ss_pred CCCCcEEEEEEEcC
Q 027369 165 IGKTNAVAFAGFGS 178 (224)
Q Consensus 165 ~G~~~a~~i~~~~s 178 (224)
.++.+.+.++.+..
T Consensus 105 ~~~~~~~~l~v~~~ 118 (131)
T COG1917 105 VEDEPMVLLLVFPL 118 (131)
T ss_pred CCCCceeEEEEeee
Confidence 99987666666654
No 10
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.34 E-value=1.7e-11 Score=96.57 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=69.4
Q ss_pred cceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEE-EEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEE
Q 027369 93 LGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVG-FVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAV 171 (224)
Q Consensus 93 lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~-~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~ 171 (224)
.++++.++.++||+..+.|+|.. .|++||++|++++. +.+. + .+.|++||++++|++..|.+.|. ++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~g-----~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~ 102 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLATG-----E--VHPIRPGTMYALDKHDRHYLRAG--EDMR 102 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCCC-----E--EEEeCCCeEEEECCCCcEEEEcC--CCEE
Confidence 46789999999999999999975 79999999999998 5322 2 58999999999999999999997 8999
Q ss_pred EEEEEcCCCCce
Q 027369 172 AFAGFGSQNPGV 183 (224)
Q Consensus 172 ~i~~~~s~~pg~ 183 (224)
++++++..-+|.
T Consensus 103 ~l~v~tP~~~~~ 114 (125)
T PRK13290 103 LVCVFNPPLTGR 114 (125)
T ss_pred EEEEECCCCCCc
Confidence 999988655543
No 11
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.8e-11 Score=96.36 Aligned_cols=82 Identities=29% Similarity=0.218 Sum_probs=72.4
Q ss_pred cceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEE
Q 027369 93 LGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 172 (224)
Q Consensus 93 lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~ 172 (224)
...++.++.+.||+-..+|.|.+.+|++||++|++.+.+.+. ...|++||++++|+|..|...|.|..|..+
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~--------~~~v~~gd~~~iP~g~~H~~~N~G~~~L~l 105 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGE--------EVEVKAGDSVYIPAGTPHRVRNTGKIPLVL 105 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCE--------EEEecCCCEEEECCCCcEEEEcCCCcceEE
Confidence 357899999999999988889888999999999999998532 589999999999999999999999999999
Q ss_pred EEEEcCCCCc
Q 027369 173 FAGFGSQNPG 182 (224)
Q Consensus 173 i~~~~s~~pg 182 (224)
+........+
T Consensus 106 iei~~p~~~~ 115 (127)
T COG0662 106 IEVQSPPYLG 115 (127)
T ss_pred EEEecCCcCC
Confidence 9877655443
No 12
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.30 E-value=6.4e-11 Score=99.60 Aligned_cols=88 Identities=18% Similarity=0.144 Sum_probs=74.4
Q ss_pred cccccceEEEEEEEcCCCc------CCceeCCCC--cEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCee
Q 027369 89 GLNTLGVSAARIDFAPYGQ------NPPHTHPRA--TEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIH 160 (224)
Q Consensus 89 ~L~~lgis~~rv~l~pgg~------~ppH~Hp~a--~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H 160 (224)
.++.-++.+....+.||.. .+.|+|+.. .|+.||++|++.+.+.+.+ .......+++||+++||+|..|
T Consensus 62 ~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~---G~~~~~~v~pGd~v~IPpg~~H 138 (191)
T PRK04190 62 EETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPE---GEARWIEMEPGTVVYVPPYWAH 138 (191)
T ss_pred CCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCC---CcEEEEEECCCCEEEECCCCcE
Confidence 3455578999999999996 567999855 4999999999999986654 3344689999999999999999
Q ss_pred EEEeCCCCcEEEEEEEcCC
Q 027369 161 FQFNIGKTNAVAFAGFGSQ 179 (224)
Q Consensus 161 ~~~N~G~~~a~~i~~~~s~ 179 (224)
...|.|++++++++.+...
T Consensus 139 ~~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 139 RSVNTGDEPLVFLACYPAD 157 (191)
T ss_pred EeEECCCCCEEEEEEEcCC
Confidence 9999999999999887654
No 13
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.18 E-value=1.5e-10 Score=93.53 Aligned_cols=92 Identities=24% Similarity=0.243 Sum_probs=73.7
Q ss_pred CcCcccccceEEEEEEEcCCCc-CCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCC--CeeEE
Q 027369 86 QIPGLNTLGVSAARIDFAPYGQ-NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIG--MIHFQ 162 (224)
Q Consensus 86 ~~P~L~~lgis~~rv~l~pgg~-~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G--~~H~~ 162 (224)
.+-||...|+-+ ..++||+. ...|||...+|++|||+|++++.+.+. ...|++||++-||+| ..|.+
T Consensus 35 ~~~Gl~~fGvn~--~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~--------e~~lrpGD~~gFpAG~~~aHhl 104 (161)
T COG3837 35 DALGLKRFGVNL--EIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGG--------ETRLRPGDSAGFPAGVGNAHHL 104 (161)
T ss_pred hhcChhhcccce--EEeCCCCccccccccccCceEEEEEcCceEEEECCe--------eEEecCCceeeccCCCcceeEE
Confidence 455677555555 45899995 799999999999999999999986442 489999999999999 89999
Q ss_pred EeCCCCcEEEEEEEcCCCCceeeec
Q 027369 163 FNIGKTNAVAFAGFGSQNPGVITIA 187 (224)
Q Consensus 163 ~N~G~~~a~~i~~~~s~~pg~~~i~ 187 (224)
.|.|+..++.+++-+-..-.....+
T Consensus 105 iN~s~~~~~yL~vG~r~~~d~i~YP 129 (161)
T COG3837 105 INRSDVILRYLEVGTREPDDIITYP 129 (161)
T ss_pred eecCCceEEEEEeccccccceeecC
Confidence 9999999999977655443444443
No 14
>PRK11171 hypothetical protein; Provisional
Probab=99.11 E-value=1.7e-09 Score=95.33 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=81.1
Q ss_pred CCCCCCCCCeeeecCCCCCCccCCCCeEEEEecccCcCcccccceEEEEEEEcCCCcCCceeCC-CCcEEEEEEecEEEE
Q 027369 51 DPKLAKPEDFFFSGLDQPGDTANRLGFKVTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHP-RATEILVVLEGTLYV 129 (224)
Q Consensus 51 ~p~~v~~~df~f~~l~~~~~~~~~~g~~v~~~~~~~~P~L~~lgis~~rv~l~pgg~~ppH~Hp-~a~Ei~yVl~G~~~v 129 (224)
+.+.+++++.+.+.+..-. +..++..... . .+.++.+.+++++||+....|.|+ ...|++||++|++++
T Consensus 27 ~~a~~~p~~~v~~~lp~~~------~~~~~~L~~~---~-~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v 96 (266)
T PRK11171 27 AYAVIPPDDIVTSVLPGWE------NTRAWVLARP---G-LGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITL 96 (266)
T ss_pred CeEEECCcCEEeecCCCCC------CeEEEEEeCC---C-CCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEE
Confidence 3455666677776553222 2233333322 2 244688999999999987777775 568999999999999
Q ss_pred EEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEE
Q 027369 130 GFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGF 176 (224)
Q Consensus 130 ~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~ 176 (224)
.+.+ + ++.|++||.++||.+..|.+.|.|++++.++++.
T Consensus 97 ~~~g------~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~ 135 (266)
T PRK11171 97 TLEG------K--THALSEGGYAYLPPGSDWTLRNAGAEDARFHWIR 135 (266)
T ss_pred EECC------E--EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEE
Confidence 8743 2 5899999999999999999999999999998875
No 15
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.10 E-value=6.7e-10 Score=104.91 Aligned_cols=78 Identities=22% Similarity=0.233 Sum_probs=70.2
Q ss_pred ceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEE
Q 027369 94 GVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 94 gis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i 173 (224)
++.+.++.++||+..++|+|++.+|.+||++|++++.+.+. .+.|++||.++||+|..|.+.|.|+++++++
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~--------~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i 446 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDE--------TLLLTENESTYIPLGVIHRLENPGKIPLELI 446 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCE--------EEEecCCCEEEECCCCcEEEEcCCCCCEEEE
Confidence 57889999999999899999988999999999999987432 4899999999999999999999999999999
Q ss_pred EEEcCC
Q 027369 174 AGFGSQ 179 (224)
Q Consensus 174 ~~~~s~ 179 (224)
++...+
T Consensus 447 ~v~~~~ 452 (468)
T TIGR01479 447 EVQSGS 452 (468)
T ss_pred EEEcCC
Confidence 987643
No 16
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.09 E-value=9.9e-10 Score=91.34 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=64.4
Q ss_pred cceEEEEEEEcCCCcC-CceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEE
Q 027369 93 LGVSAARIDFAPYGQN-PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAV 171 (224)
Q Consensus 93 lgis~~rv~l~pgg~~-ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~ 171 (224)
..+.+.++.++||+.. +.|+|+ ..|++||++|++.+.+.+. .+.|++||.++||.+.+|.+.|.|++++.
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h~-~~E~~~Vl~G~~~~~~~~~--------~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~ 175 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKHQ-GEEIGTVLEGEIVLTINGQ--------DYHLVAGQSYAINTGIPHSFSNTSAGICR 175 (185)
T ss_pred CeeEEEEEEccCCCCcccccccC-CcEEEEEEEeEEEEEECCE--------EEEecCCCEEEEcCCCCeeeeCCCCCCeE
Confidence 3466777889999964 466776 6999999999999987432 48999999999999999999999999999
Q ss_pred EEEEEc
Q 027369 172 AFAGFG 177 (224)
Q Consensus 172 ~i~~~~ 177 (224)
++++..
T Consensus 176 ~l~~~~ 181 (185)
T PRK09943 176 IISAHT 181 (185)
T ss_pred EEEEeC
Confidence 988764
No 17
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=1.4e-09 Score=84.16 Aligned_cols=85 Identities=20% Similarity=0.270 Sum_probs=74.2
Q ss_pred ceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEE
Q 027369 94 GVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 94 gis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i 173 (224)
||-+-.++++||+..-.|.|..-+-.+||++|+..+.+.+. -.+..+..+||.|+||+|++|.-.|.+++|+.++
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~r-----LE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~v 119 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNR-----LEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAV 119 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccc-----eeeeEEecCCCeEEcCCCCCCcccccCCCCeEEE
Confidence 67788899999999999999988899999999999988532 2345788999999999999999999999999999
Q ss_pred EEEcCCCCce
Q 027369 174 AGFGSQNPGV 183 (224)
Q Consensus 174 ~~~~s~~pg~ 183 (224)
.+.+..||..
T Consensus 120 IaRsDp~~~E 129 (142)
T COG4101 120 IARSDPNPQE 129 (142)
T ss_pred EEccCCCCCc
Confidence 8888777643
No 18
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.06 E-value=1.1e-09 Score=103.75 Aligned_cols=77 Identities=23% Similarity=0.228 Sum_probs=69.1
Q ss_pred ceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEE
Q 027369 94 GVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 94 gis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i 173 (224)
++.+.++.++||+....|+|...+|.+||++|++++.+.+. ++.|++||.++||+|.+|.+.|.|++|++++
T Consensus 384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~--------~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI 455 (478)
T PRK15460 384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGD--------IKLLGENESIYIPLGATHCLENPGKIPLDLI 455 (478)
T ss_pred cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCE--------EEEecCCCEEEECCCCcEEEEcCCCCCEEEE
Confidence 57889999999998877888778899999999999997543 5899999999999999999999999999999
Q ss_pred EEEcC
Q 027369 174 AGFGS 178 (224)
Q Consensus 174 ~~~~s 178 (224)
++...
T Consensus 456 ~V~~g 460 (478)
T PRK15460 456 EVRSG 460 (478)
T ss_pred EEEcC
Confidence 88643
No 19
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.97 E-value=5.5e-09 Score=84.88 Aligned_cols=76 Identities=26% Similarity=0.226 Sum_probs=68.3
Q ss_pred cceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEE
Q 027369 93 LGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 172 (224)
Q Consensus 93 lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~ 172 (224)
-+..+-|+.+.||.....|.|.+.+|..+|++|++.+.+.+ + .+.+++||.+++|+|..|.+.|.|+.|..+
T Consensus 61 ~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~------~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~ 132 (151)
T PF01050_consen 61 EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDD------E--EFTLKEGDSVYIPRGAKHRIENPGKTPLEI 132 (151)
T ss_pred CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECC------E--EEEEcCCCEEEECCCCEEEEECCCCcCcEE
Confidence 35778999999999999999999999999999999998743 2 589999999999999999999999999998
Q ss_pred EEEE
Q 027369 173 FAGF 176 (224)
Q Consensus 173 i~~~ 176 (224)
+-+-
T Consensus 133 IEVq 136 (151)
T PF01050_consen 133 IEVQ 136 (151)
T ss_pred EEEe
Confidence 8654
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.92 E-value=8.7e-09 Score=90.50 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=64.6
Q ss_pred ceEEEEEEEcCCCcC-CceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEE
Q 027369 94 GVSAARIDFAPYGQN-PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 172 (224)
Q Consensus 94 gis~~rv~l~pgg~~-ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~ 172 (224)
.+.+.+++++||+-. .+|.|+..+|++||++|++++.+.+. ++.|++||.+++|+|..|.+.|.+++++++
T Consensus 57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~--------~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~ 128 (260)
T TIGR03214 57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGE--------THELREGGYAYLPPGSKWTLANAQAEDARF 128 (260)
T ss_pred cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCE--------EEEECCCCEEEECCCCCEEEEECCCCCEEE
Confidence 578899999998854 56667766899999999999986432 489999999999999999999999999999
Q ss_pred EEEE
Q 027369 173 FAGF 176 (224)
Q Consensus 173 i~~~ 176 (224)
+++-
T Consensus 129 l~v~ 132 (260)
T TIGR03214 129 FLYK 132 (260)
T ss_pred EEEE
Confidence 8765
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.89 E-value=1.1e-08 Score=89.87 Aligned_cols=73 Identities=18% Similarity=0.131 Sum_probs=62.8
Q ss_pred ceEEEEEEEcCCCcCCc-eeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEE
Q 027369 94 GVSAARIDFAPYGQNPP-HTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 172 (224)
Q Consensus 94 gis~~rv~l~pgg~~pp-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~ 172 (224)
++.+.+++++||+..+. |.|. -+|.+||++|++.+...+ + ...+++||++++|++.+|+.+|.|+++.++
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~-~eh~~yiL~G~G~~~~~g------~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~ 248 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHV-MEHGLYVLEGKGVYNLDN------N--WVPVEAGDYIWMGAYCPQACYAGGRGEFRY 248 (260)
T ss_pred CcEEEEEEECCCcccCCccccc-ceeEEEEEeceEEEEECC------E--EEEecCCCEEEECCCCCEEEEecCCCcEEE
Confidence 56788899999999985 5565 689999999999997643 2 589999999999999999999999999988
Q ss_pred EEE
Q 027369 173 FAG 175 (224)
Q Consensus 173 i~~ 175 (224)
+.-
T Consensus 249 l~y 251 (260)
T TIGR03214 249 LLY 251 (260)
T ss_pred EEE
Confidence 743
No 22
>PRK11171 hypothetical protein; Provisional
Probab=98.84 E-value=1.8e-08 Score=88.74 Aligned_cols=74 Identities=18% Similarity=0.058 Sum_probs=64.1
Q ss_pred ceEEEEEEEcCCCcCCce-eCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEE
Q 027369 94 GVSAARIDFAPYGQNPPH-THPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 172 (224)
Q Consensus 94 gis~~rv~l~pgg~~ppH-~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~ 172 (224)
+..+.+++++||+..+.| .| ..+|.+||++|++++.+.+ + .+.|++||++.||.+..|++.|.|++++++
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~-~~ee~i~Vl~G~~~~~~~~------~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~y 253 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETH-VMEHGLYVLEGKGVYRLNN------D--WVEVEAGDFIWMRAYCPQACYAGGPGPFRY 253 (266)
T ss_pred CcEEEEEEECCCCEEccCcCC-CceEEEEEEeCEEEEEECC------E--EEEeCCCCEEEECCCCCEEEECCCCCcEEE
Confidence 368899999999998885 55 4789999999999998643 2 589999999999999999999999999998
Q ss_pred EEEE
Q 027369 173 FAGF 176 (224)
Q Consensus 173 i~~~ 176 (224)
+..-
T Consensus 254 l~~k 257 (266)
T PRK11171 254 LLYK 257 (266)
T ss_pred EEEc
Confidence 8543
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.71 E-value=2.8e-07 Score=74.08 Aligned_cols=100 Identities=19% Similarity=0.250 Sum_probs=60.3
Q ss_pred cCcccccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCC-CCeeEEEEecCCCEEEEcCCCeeEEEeC
Q 027369 87 IPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL-NNTLIAKVLNKGDVFVFPIGMIHFQFNI 165 (224)
Q Consensus 87 ~P~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~~~~L~~GDv~v~P~G~~H~~~N~ 165 (224)
.-|+. .+.+..-+++||...|+|-|. .+|+++|++|+++..+...... .++-....+.+++.|.||.+..|...|+
T Consensus 38 ~hGmk--evEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT 114 (167)
T PF02041_consen 38 LHGMK--EVEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNT 114 (167)
T ss_dssp HH--S--SEEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE--
T ss_pred hcCce--eeeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecC
Confidence 34444 468888999999999999997 7999999999999988754310 0344568899999999999999999999
Q ss_pred C-CCcEEEEEEEcCCCCceeeechh
Q 027369 166 G-KTNAVAFAGFGSQNPGVITIANT 189 (224)
Q Consensus 166 G-~~~a~~i~~~~s~~pg~~~i~~~ 189 (224)
+ .+++.++++++..--..+.+.+|
T Consensus 115 ~e~eDlqvlViiSrpPvkvf~y~dw 139 (167)
T PF02041_consen 115 NEHEDLQVLVIISRPPVKVFIYDDW 139 (167)
T ss_dssp -SSS-EEEEEEEESSS--EEEESST
T ss_pred CCCcceEEEEEecCCCeEEEEeccc
Confidence 9 58898887776554455555555
No 24
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.63 E-value=4e-07 Score=76.04 Aligned_cols=89 Identities=24% Similarity=0.209 Sum_probs=56.3
Q ss_pred ccccceEEEEEEEcCCCc------CCceeCCC------CcEEEEEEecEEEEEEEecCCC-CCeeEEEEecCCCEEEEcC
Q 027369 90 LNTLGVSAARIDFAPYGQ------NPPHTHPR------ATEILVVLEGTLYVGFVTSNQL-NNTLIAKVLNKGDVFVFPI 156 (224)
Q Consensus 90 L~~lgis~~rv~l~pgg~------~ppH~Hp~------a~Ei~yVl~G~~~v~~~~~~~~-~~~~~~~~L~~GDv~v~P~ 156 (224)
+...++......+.||-+ .-=|+|+. ..|+.+|++|++.+-+-+.+++ -.+.+...+++||+++||+
T Consensus 45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp 124 (182)
T PF06560_consen 45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPP 124 (182)
T ss_dssp -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-T
T ss_pred ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECC
Confidence 344467777788888764 35599998 7899999999999998776510 0156678999999999999
Q ss_pred CCeeEEEeCCCCcEEEEEEEcC
Q 027369 157 GMIHFQFNIGKTNAVAFAGFGS 178 (224)
Q Consensus 157 G~~H~~~N~G~~~a~~i~~~~s 178 (224)
+..|...|+|+++.++.+...+
T Consensus 125 ~yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 125 GYAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp T-EEEEEE-SSS-EEEEEEEET
T ss_pred CceEEEEECCCCcEEEEEEEec
Confidence 9999999999999988877654
No 25
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.54 E-value=7e-07 Score=65.84 Aligned_cols=72 Identities=26% Similarity=0.425 Sum_probs=54.1
Q ss_pred ceEEEEEEEcCCCcCCc-eeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEE
Q 027369 94 GVSAARIDFAPYGQNPP-HTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 172 (224)
Q Consensus 94 gis~~rv~l~pgg~~pp-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~ 172 (224)
.++...++|+||+.-++ +++ +..-++||++|.+++++.++ +..+.+||+|.+|+|-...+.|.|+++|++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~-~~~~vF~V~~G~v~Vti~~~--------~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~L 81 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSR-DNTMVFYVIKGKVEVTIHET--------SFVVTKGGSFQVPRGNYYSIKNIGNEEAKL 81 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE---SEEEEEEEEESEEEEEETTE--------EEEEETT-EEEE-TT-EEEEEE-SSS-EEE
T ss_pred CceeEEEEeCCCCccCCcccC-CcEEEEEEEeCEEEEEEcCc--------EEEEeCCCEEEECCCCEEEEEECCCCcEEE
Confidence 46788899999998655 544 46889999999999998543 488999999999999999999999999988
Q ss_pred EE
Q 027369 173 FA 174 (224)
Q Consensus 173 i~ 174 (224)
+-
T Consensus 82 fF 83 (85)
T PF11699_consen 82 FF 83 (85)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 26
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.52 E-value=7.8e-07 Score=72.68 Aligned_cols=60 Identities=20% Similarity=0.377 Sum_probs=49.4
Q ss_pred cCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 027369 103 APYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 103 ~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~ 167 (224)
.||.....|.|+ .+|++|+++|++.+.+.+. ++.....|++||++++|+|+.|.....++
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~----g~~~~v~L~eGd~flvP~gvpHsP~r~~~ 95 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE----GKREDVPIREGDIFLLPPHVPHSPQRPAG 95 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC----CcEEEEEECCCCEEEeCCCCCcccccCCC
Confidence 555567789987 7999999999999998765 34446899999999999999999766433
No 27
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.52 E-value=6.4e-07 Score=74.27 Aligned_cols=66 Identities=18% Similarity=0.343 Sum_probs=53.3
Q ss_pred cCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEE
Q 027369 103 APYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAG 175 (224)
Q Consensus 103 ~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~ 175 (224)
.||.....|+|+ .+|++|+++|++.+.+.+. ++.....|++||++++|+|+.|..... +..+.+.+
T Consensus 42 Gpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~----g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi 107 (177)
T PRK13264 42 GPNARTDFHYDP-GEEFFYQLEGDMYLKVQED----GKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI 107 (177)
T ss_pred cCCcccccccCC-CceEEEEECCeEEEEEEcC----CceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence 677778889998 7999999999999999874 444468999999999999999997663 34444433
No 28
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.43 E-value=9.4e-07 Score=75.67 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=62.6
Q ss_pred eEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEE
Q 027369 95 VSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFA 174 (224)
Q Consensus 95 is~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~ 174 (224)
..+..+.++||+.+|.|.|. +.|+++|++|++. ++. ..+.+||++..|.|..|...+.+.+++++++
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~-G~E~tlVLeG~f~----de~--------g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~ 193 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHK-GFELTLVLHGAFS----DET--------GVYGVGDFEEADGSVQHQPRTVSGGDCLCLA 193 (215)
T ss_pred cEEEEEEECCCCccCCCcCC-CcEEEEEEEEEEE----cCC--------CccCCCeEEECCCCCCcCcccCCCCCeEEEE
Confidence 45677889999999999996 7999999999953 332 4689999999999999999999999999998
Q ss_pred EEcCC
Q 027369 175 GFGSQ 179 (224)
Q Consensus 175 ~~~s~ 179 (224)
+.+..
T Consensus 194 v~dap 198 (215)
T TIGR02451 194 VLDAP 198 (215)
T ss_pred EecCC
Confidence 88754
No 29
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.43 E-value=1.1e-06 Score=64.95 Aligned_cols=66 Identities=26% Similarity=0.412 Sum_probs=51.9
Q ss_pred ceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEE
Q 027369 94 GVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 94 gis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i 173 (224)
|..+..+.++||+..|.|.|+ +.|.+|||+|++.. .+ ..+.+||.++.|+|..|.... ++.++++
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d----~~--------~~~~~G~~~~~p~g~~h~~~s--~~gc~~~ 87 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSD----GD--------GRYGAGDWLRLPPGSSHTPRS--DEGCLIL 87 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEE----TT--------CEEETTEEEEE-TTEEEEEEE--SSCEEEE
T ss_pred cCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEE----CC--------ccCCCCeEEEeCCCCccccCc--CCCEEEE
Confidence 567888999999999999998 68888999999984 22 356999999999999999873 5556665
Q ss_pred E
Q 027369 174 A 174 (224)
Q Consensus 174 ~ 174 (224)
.
T Consensus 88 v 88 (91)
T PF12973_consen 88 V 88 (91)
T ss_dssp E
T ss_pred E
Confidence 4
No 30
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.32 E-value=2.7e-06 Score=64.77 Aligned_cols=63 Identities=27% Similarity=0.295 Sum_probs=44.8
Q ss_pred CCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEE
Q 027369 104 PYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAG 175 (224)
Q Consensus 104 pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~ 175 (224)
++-..++|+|+ .-|+.||++|++++.+.+ + .+.+++||++++|+|.+|.....++++...++.
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~~~------~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i 74 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHIDG------Q--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWI 74 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEETT------E--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEECC------E--EEEEECCEEEEecCCccEEEecCCCCCEEEEEE
Confidence 44456899998 699999999999997633 2 589999999999999999998887767665544
No 31
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.25 E-value=1.4e-05 Score=65.40 Aligned_cols=71 Identities=25% Similarity=0.352 Sum_probs=49.0
Q ss_pred cCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEcCCCCc
Q 027369 107 QNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGFGSQNPG 182 (224)
Q Consensus 107 ~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~pg 182 (224)
....|.|. ..|+-|+++|++.+.+...+ ++.....+++||++++|+|+.|++.-.-+...+++=.| ...||
T Consensus 84 f~~EH~H~-deEvR~i~~G~g~Fdvr~~~---~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF-~~~~g 154 (157)
T PF03079_consen 84 FFEEHTHE-DEEVRYIVDGSGYFDVRDGD---DVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLF-KDEPG 154 (157)
T ss_dssp HCS-EEES-S-EEEEEEECEEEEEEE-TT---CEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEE-SSCGG
T ss_pred hheeEecC-hheEEEEeCcEEEEEEEcCC---CEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEee-cCCCC
Confidence 34789998 59999999999999998765 55555789999999999999999864434445555444 34444
No 32
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.18 E-value=1.4e-05 Score=68.85 Aligned_cols=69 Identities=20% Similarity=0.095 Sum_probs=48.8
Q ss_pred eEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEE
Q 027369 95 VSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFA 174 (224)
Q Consensus 95 is~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~ 174 (224)
++...+.++. + ..+||.+..|+.||++|++++.+.+ + ++.+++||+++||+|..|.+...+ .+.++.
T Consensus 157 m~aGf~~~~~-~--sf~wtl~~dEi~YVLEGe~~l~IdG------~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRfly 223 (233)
T PRK15457 157 MAAGFMQWEN-A--FFPWTLNYDEIDMVLEGELHVRHEG------E--TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLY 223 (233)
T ss_pred eeeEEEEEec-C--ccceeccceEEEEEEEeEEEEEECC------E--EEEeCCCcEEEECCCCeEEecCCC--CeeEEE
Confidence 4445555553 2 2347777899999999999999742 2 589999999999999995544443 455544
Q ss_pred EE
Q 027369 175 GF 176 (224)
Q Consensus 175 ~~ 176 (224)
+.
T Consensus 224 V~ 225 (233)
T PRK15457 224 VA 225 (233)
T ss_pred EE
Confidence 43
No 33
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.10 E-value=7.8e-06 Score=74.32 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=63.2
Q ss_pred ceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEE
Q 027369 94 GVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 94 gis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i 173 (224)
.+.+..-.+.||...++|-|. +.-+.+|++|++....++.. ...+++||+|+.|.+..|...|.|+++++.+
T Consensus 80 tl~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V~g~-------~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wl 151 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAVDGE-------RTTMHPGDFIITPSWTWHDHGNPGDEPMIWL 151 (335)
T ss_pred hHHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEECCE-------EEeeeCCCEEEeCCCeeEecccCCCCcEEEE
Confidence 344555668999999999997 78999999999965556532 5899999999999999999999999997776
Q ss_pred EEEc
Q 027369 174 AGFG 177 (224)
Q Consensus 174 ~~~~ 177 (224)
...+
T Consensus 152 d~lD 155 (335)
T TIGR02272 152 DGLD 155 (335)
T ss_pred ecCC
Confidence 5654
No 34
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.05 E-value=1.6e-05 Score=70.94 Aligned_cols=61 Identities=18% Similarity=0.111 Sum_probs=49.6
Q ss_pred EEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 027369 98 ARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 98 ~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~ 167 (224)
+.....|..|.++|||. .-|+.|+++|++.+.+.+ + ...+++||+++++.|.+|.....++
T Consensus 29 ~~~~~~~~~m~~~HwH~-e~Ei~yv~~G~~~~~i~g------~--~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 29 EIEFRPPHIMPTSHWHG-QVEVNVPFDGDVEYLINN------E--KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EEEeeCCCCCCCCCccc-cEEEEEecCCcEEEEECC------E--EEEEcCCcEEEEecCCcccccccCC
Confidence 33446777889999997 589999999999887632 3 5889999999999999998765544
No 35
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.99 E-value=1.2e-05 Score=71.44 Aligned_cols=115 Identities=20% Similarity=0.229 Sum_probs=86.8
Q ss_pred CCCCCeeeecC----CCCCCccCCCCeEEEEecccCcCcccccc-----eEEEEEEEcCCCcCCceeCCCCcEEEEEEec
Q 027369 55 AKPEDFFFSGL----DQPGDTANRLGFKVTTVNVEQIPGLNTLG-----VSAARIDFAPYGQNPPHTHPRATEILVVLEG 125 (224)
Q Consensus 55 v~~~df~f~~l----~~~~~~~~~~g~~v~~~~~~~~P~L~~lg-----is~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G 125 (224)
..+--|.|.-+ .+.+..-...++ +..+-.-+-|+|++.. +-...--|.||.+.|.|.|. .+-+-+|+||
T Consensus 44 ~vp~lW~~~~ir~ll~~sgeli~~~~a-~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHs-qsAlRFvveG 121 (351)
T COG3435 44 CVPALWKYEEIRPLLLRSGELISAREA-VRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHN-QSALRFVVEG 121 (351)
T ss_pred cccccccHHHHHHHHHHhhhccCcccc-eeEEEEecCCCCCCcccccHHHHhhhheecCcccCCccccc-ccceEEEEec
Confidence 33444556532 233333233333 7777788899999874 11233458899999999997 6899999999
Q ss_pred EEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEcC
Q 027369 126 TLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGFGS 178 (224)
Q Consensus 126 ~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s 178 (224)
++-.+.++.. ...+++||.++-|++..|..-|.|.+|++.+-.++.
T Consensus 122 ~Ga~T~VdGe-------r~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDi 167 (351)
T COG3435 122 KGAYTVVDGE-------RTPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDI 167 (351)
T ss_pred cceeEeecCc-------eeeccCCCEEEccCceeccCCCCCCCceEEEcccch
Confidence 9988888753 378999999999999999999999999999887754
No 36
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.88 E-value=4.9e-05 Score=54.30 Aligned_cols=58 Identities=24% Similarity=0.285 Sum_probs=42.4
Q ss_pred eEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEE
Q 027369 95 VSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQ 162 (224)
Q Consensus 95 is~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~ 162 (224)
++.......||.. ..++. ..|++|||+|++++... + +. +.++++||++++|+|..-.+
T Consensus 7 ~~~g~w~~~pg~~-~~~~~--~~E~~~vleG~v~it~~--~---G~--~~~~~aGD~~~~p~G~~~~w 64 (74)
T PF05899_consen 7 FSAGVWECTPGKF-PWPYP--EDEFFYVLEGEVTITDE--D---GE--TVTFKAGDAFFLPKGWTGTW 64 (74)
T ss_dssp EEEEEEEEECEEE-EEEES--SEEEEEEEEEEEEEEET--T---TE--EEEEETTEEEEE-TTEEEEE
T ss_pred EEEEEEEECCcee-EeeCC--CCEEEEEEEeEEEEEEC--C---CC--EEEEcCCcEEEECCCCEEEE
Confidence 4566677788653 33444 48999999999999853 2 23 58999999999999985544
No 37
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.88 E-value=0.00011 Score=60.39 Aligned_cols=73 Identities=21% Similarity=0.293 Sum_probs=58.3
Q ss_pred CceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEcCCCCceeee
Q 027369 109 PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGFGSQNPGVITI 186 (224)
Q Consensus 109 ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~pg~~~i 186 (224)
.-|.|. ..|+-|++.|++.+.+...+ ++++.-.+.+||.+.+|+|.-||+.-.-+-..+++=.| ...+|.+.+
T Consensus 89 ~EH~H~-d~EvRy~vaG~GiF~v~~~d---~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF-~~~~gWVa~ 161 (181)
T COG1791 89 QEHLHT-DDEVRYFVAGEGIFDVHSPD---GKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLF-TEPEGWVAI 161 (181)
T ss_pred HHhccC-CceEEEEEecceEEEEECCC---CcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEe-eCCCCceee
Confidence 569997 69999999999999998876 68889999999999999999999855444445555444 466776543
No 38
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.88 E-value=2.7e-05 Score=68.11 Aligned_cols=73 Identities=30% Similarity=0.352 Sum_probs=47.1
Q ss_pred ccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEE
Q 027369 92 TLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAV 171 (224)
Q Consensus 92 ~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~ 171 (224)
..|.+..|+.+++|=..|||+|. +++-+|||+|.+..+ + .+...+-|.+|..+..|+|..|+....|.+.+.
T Consensus 33 ~~g~~~~~vkf~~g~~~pph~H~-~~~~~~Vi~G~~~~~--~-----~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~ 104 (251)
T PF14499_consen 33 KDGPSGMRVKFPAGFSSPPHIHN-ADYRGTVISGELHNG--D-----PKAAAMWLPAGSYWFQPAGEPHITAAEGETNLL 104 (251)
T ss_dssp TTS-EEEEEEE-TT-EE--BEES-S-EEEEEEESEEEET--T-----EE-----E-TTEEEEE-TT-EEEETTS-EE-EE
T ss_pred cCCcceEEEEcCCCccCCCccee-eeEEEEEEEeEEEcC--C-----CcccceecCCCceEeccCCCceeeeccCccEEE
Confidence 34788999999999999999997 899999999987763 2 233346799999999999999998776665443
Q ss_pred E
Q 027369 172 A 172 (224)
Q Consensus 172 ~ 172 (224)
+
T Consensus 105 ~ 105 (251)
T PF14499_consen 105 F 105 (251)
T ss_dssp E
T ss_pred E
Confidence 3
No 39
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=97.88 E-value=8.4e-05 Score=64.85 Aligned_cols=52 Identities=27% Similarity=0.399 Sum_probs=43.0
Q ss_pred CCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeC
Q 027369 105 YGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNI 165 (224)
Q Consensus 105 gg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~ 165 (224)
+...++|||. ..|++||++|++++.+.+ + ...+.+||++++|+|..|.....
T Consensus 33 ~~~~~~H~H~-~~ei~~v~~G~~~~~i~~------~--~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHD-YYEFTLVLTGRYYQEING------K--RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCcccc-cEEEEEEEeceEEEEECC------E--EEEECCCcEEEeCCCCccceeee
Confidence 3356899996 799999999999987632 2 48999999999999999976443
No 40
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.86 E-value=0.00017 Score=57.15 Aligned_cols=96 Identities=17% Similarity=0.133 Sum_probs=52.8
Q ss_pred CeEEEEecccCcCcccccceEEEEEE-EcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCC-CEEE
Q 027369 76 GFKVTTVNVEQIPGLNTLGVSAARID-FAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKG-DVFV 153 (224)
Q Consensus 76 g~~v~~~~~~~~P~L~~lgis~~rv~-l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~G-Dv~v 153 (224)
.|.++.+...+-....- -.+..+. .++|.....|.|...+|+++|++|++.+.+.+.. ......|..- ..+.
T Consensus 15 RG~L~~~e~~~~ipf~i--~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~----~~~~~~L~~~~~~L~ 88 (131)
T PF05523_consen 15 RGSLSVIERFDDIPFEI--KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGR----EEEEFILDEPNKGLY 88 (131)
T ss_dssp TEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-----EEEEEE--TTEEEE
T ss_pred CCcEEEEeccCCCCCCc--cEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCC----CcEEEEECCCCeEEE
Confidence 34466555543222221 1233332 4444458999999999999999999999987643 2245677555 5899
Q ss_pred EcCCCeeEEEeCCCCcEEEEEEEcCC
Q 027369 154 FPIGMIHFQFNIGKTNAVAFAGFGSQ 179 (224)
Q Consensus 154 ~P~G~~H~~~N~G~~~a~~i~~~~s~ 179 (224)
+|+|.+|.+.|.+.. ++++ ++.+.
T Consensus 89 Ippg~w~~~~~~s~~-svlL-v~as~ 112 (131)
T PF05523_consen 89 IPPGVWHGIKNFSED-SVLL-VLASE 112 (131)
T ss_dssp E-TT-EEEEE---TT--EEE-EEESS
T ss_pred ECCchhhHhhccCCC-cEEE-EEcCC
Confidence 999999999999887 7666 45554
No 41
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.78 E-value=7.8e-05 Score=65.60 Aligned_cols=63 Identities=22% Similarity=0.190 Sum_probs=48.5
Q ss_pred ceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 027369 94 GVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 94 gis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~ 167 (224)
.+.+.+ ..+....++|||. .-|++||++|++++.+.+ + .+.+++||++++|+|.+|.+...++
T Consensus 19 ~~~~~~--~~~~~~~~~H~H~-~~ei~~i~~G~~~~~i~~------~--~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 19 PVAVTN--RYPQETFVEHTHQ-FCEIVIVWRGNGLHVLND------H--PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred ceEEec--CCCCCCCcccccc-ceeEEEEecCceEEEECC------e--eeeecCCeEEEEcCCCcccccccCC
Confidence 344444 2334456799997 799999999999998633 2 5899999999999999999875443
No 42
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.77 E-value=9.7e-05 Score=66.08 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=45.6
Q ss_pred CCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 027369 104 PYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 104 pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~ 167 (224)
|....++|||+ .-|++||++|++...+.+. .+.+++||+++||+|.+|......+
T Consensus 57 ~~~~~~~H~H~-~~el~~v~~G~g~~~v~~~--------~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 57 PQDVFAEHTHD-FCELVIVWRGNGLHVLNDR--------PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCccccc-eEEEEEEEcCeEEEEECCE--------EEeecCCeEEEECCCCeecccccCC
Confidence 34457899997 7999999999999876432 4899999999999999999776444
No 43
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.76 E-value=7.3e-05 Score=65.32 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=46.0
Q ss_pred CCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCc
Q 027369 105 YGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTN 169 (224)
Q Consensus 105 gg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~ 169 (224)
+...++|||.+.-|++|+++|++.+.+.+ + ...+++||++++|+|..|.....++..
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~~------~--~~~l~~g~~~ii~~~~~H~~~~~~~~~ 89 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQLDE------H--EYSEYAPCFFLTPPSVPHGFVTDLDAD 89 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEECC------E--EEEecCCeEEEeCCCCccccccCCCcc
Confidence 34589999975689999999999987632 2 589999999999999999986554433
No 44
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.75 E-value=6.1e-05 Score=60.00 Aligned_cols=66 Identities=24% Similarity=0.338 Sum_probs=51.9
Q ss_pred CCc-CCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEE
Q 027369 105 YGQ-NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGF 176 (224)
Q Consensus 105 gg~-~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~ 176 (224)
|++ .-.|||..+.|++.|++|+..+.+...+ ++ ...+.+||++++|.|.-|.- +..+.+..++.++
T Consensus 52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~---G~--el~v~~GDvlliPAGvGH~r-l~sS~DF~VvGaY 118 (163)
T COG4297 52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGAD---GQ--ELEVGEGDVLLIPAGVGHCR-LHSSADFQVVGAY 118 (163)
T ss_pred ccccccccccCCcceEEEEecceeEEEecCCC---Cc--eeeecCCCEEEEecCccccc-ccCCCCeEEEccc
Confidence 444 4569999999999999999999998776 34 47889999999999999964 4444455555554
No 45
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.66 E-value=8.7e-05 Score=60.70 Aligned_cols=55 Identities=31% Similarity=0.447 Sum_probs=47.8
Q ss_pred CCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCC
Q 027369 108 NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIG 166 (224)
Q Consensus 108 ~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G 166 (224)
...|.|++ +|+-||++|+++.-+-+.+ .+-+..-+++||.+++|+|+.|.+.-..
T Consensus 86 fEEhlh~d-eeiR~il~GtgYfDVrd~d---d~WIRi~vekGDlivlPaGiyHRFTtt~ 140 (179)
T KOG2107|consen 86 FEEHLHED-EEIRYILEGTGYFDVRDKD---DQWIRIFVEKGDLIVLPAGIYHRFTTTP 140 (179)
T ss_pred HHHhcCch-hheEEEeecceEEeeccCC---CCEEEEEEecCCEEEecCcceeeeecCc
Confidence 47899985 9999999999999988776 6777778999999999999999885543
No 46
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.58 E-value=0.00059 Score=58.43 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=63.2
Q ss_pred EEEEEEEcCCC-cCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEE
Q 027369 96 SAARIDFAPYG-QNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFA 174 (224)
Q Consensus 96 s~~rv~l~pgg-~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~ 174 (224)
+-..+++.|+| .-.|-.-++++-++||++|++++.+.+. ++.|++|+..++|+|..|...|...+++.+.+
T Consensus 62 ~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~--------th~l~eggyaylPpgs~~~~~N~~~~~~rfhw 133 (264)
T COG3257 62 VQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGK--------THALREGGYAYLPPGSGWTLRNAQKEDSRFHW 133 (264)
T ss_pred hhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCe--------EEEeccCCeEEeCCCCcceEeeccCCceEEEE
Confidence 44568898877 6677778889999999999999987543 58999999999999999999999999998876
Q ss_pred EEc
Q 027369 175 GFG 177 (224)
Q Consensus 175 ~~~ 177 (224)
.-.
T Consensus 134 ~rk 136 (264)
T COG3257 134 IRK 136 (264)
T ss_pred Eee
Confidence 643
No 47
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=97.55 E-value=0.0014 Score=51.38 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=70.4
Q ss_pred cccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcE
Q 027369 91 NTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNA 170 (224)
Q Consensus 91 ~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a 170 (224)
.+.|.|+-.-.+.+|.-...||-. .-|-+||++|++++.-.+. ++ .+.++||.++...+.-.|+.+... +.
T Consensus 31 DgmGFS~h~T~i~aGtet~~~Ykn-HlEAvyci~G~Gev~~~~~----G~--~~~i~pGt~YaLd~hD~H~lra~~--dm 101 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHYKN-HLEAVYCIEGEGEVEDLDT----GE--VHPIKPGTMYALDKHDRHYLRAKT--DM 101 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEecC-ceEEEEEEeceEEEEEccC----Cc--EEEcCCCeEEecCCCccEEEEecC--CE
Confidence 456899999999999999999875 5899999999999987654 33 589999999999999999987643 89
Q ss_pred EEEEEEcCCCCc
Q 027369 171 VAFAGFGSQNPG 182 (224)
Q Consensus 171 ~~i~~~~s~~pg 182 (224)
.++|+||.+--|
T Consensus 102 ~~vCVFnPpltG 113 (126)
T PF06339_consen 102 RLVCVFNPPLTG 113 (126)
T ss_pred EEEEEcCCCCcC
Confidence 999999876433
No 48
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.52 E-value=0.0003 Score=64.12 Aligned_cols=86 Identities=21% Similarity=0.125 Sum_probs=64.1
Q ss_pred CCeEEEEecccCcC-cccccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEE
Q 027369 75 LGFKVTTVNVEQIP-GLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFV 153 (224)
Q Consensus 75 ~g~~v~~~~~~~~P-~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v 153 (224)
.|..+..++..+=+ ...+++..+ ..+.+|....+|-|. .+.+++|++|++++.+.+ + +...++||+|+
T Consensus 231 ~g~~l~y~NP~TG~~~~pti~~~~--q~L~~G~~t~~~r~T-~s~Vf~VieG~G~s~ig~------~--~~~W~~gD~f~ 299 (335)
T TIGR02272 231 HGLKLRYVNPATGGYPMPTIGAFI--QLLPKGFRTATYRST-DATVFCVVEGRGQVRIGD------A--VFRFSPKDVFV 299 (335)
T ss_pred ceEEEEEeCCCCCCCcchhHHHHH--hccCCCCCCCCcccc-ccEEEEEEeCeEEEEECC------E--EEEecCCCEEE
Confidence 35556777765555 345555554 457888899999996 689999999999998743 2 47899999999
Q ss_pred EcCCCeeEEEeCCCCcEEEE
Q 027369 154 FPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 154 ~P~G~~H~~~N~G~~~a~~i 173 (224)
+|.-..|...|. ++++++
T Consensus 300 vPsW~~~~h~a~--~da~Lf 317 (335)
T TIGR02272 300 VPSWHPVRFEAS--DDAVLF 317 (335)
T ss_pred ECCCCcEecccC--CCeEEE
Confidence 999988776663 456554
No 49
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.51 E-value=0.00037 Score=60.88 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=45.4
Q ss_pred cCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 027369 103 APYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 103 ~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~ 167 (224)
.|.-..++|||. .-|++||.+|++++.+.+ + ...+++||++++|+|.+|.....++
T Consensus 26 ~~~~~~~~H~h~-~~~l~~v~~G~~~~~i~~------~--~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 26 YPQDVFAEHTHE-FCELVMVWRGNGLHVLNE------R--PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCccccc-eEEEEEEecCcEEEEECC------E--EEeecCCcEEEECCCCcccccccCC
Confidence 344457899997 789999999999988633 2 4899999999999999998765443
No 50
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.50 E-value=0.0016 Score=52.59 Aligned_cols=71 Identities=14% Similarity=0.253 Sum_probs=46.9
Q ss_pred EEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEE
Q 027369 99 RIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGF 176 (224)
Q Consensus 99 rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~ 176 (224)
.+.=.|+...--|+.+ ++|++|-++|...+.+++. ++.....+++||+|..|++.+|.-.-.. ..+.+.+-
T Consensus 37 mvVGGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e~----g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViE 107 (151)
T PF06052_consen 37 MVVGGPNQRTDYHINE-TEEFFYQLKGDMCLKVVED----GKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIE 107 (151)
T ss_dssp EEEESSB--SSEEE-S-S-EEEEEEES-EEEEEEET----TEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEE
T ss_pred EEEcCCCCCCccccCC-cceEEEEEeCcEEEEEEeC----CceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEE
Confidence 3445666677889998 7999999999999999875 4666789999999999999999976653 34444443
No 51
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.47 E-value=0.00024 Score=61.68 Aligned_cols=53 Identities=26% Similarity=0.238 Sum_probs=44.6
Q ss_pred CCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeC
Q 027369 104 PYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNI 165 (224)
Q Consensus 104 pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~ 165 (224)
+....++|||. .-|++||++|++++.+.+. ...+++||++++|+|..|.....
T Consensus 24 ~~~~~~~H~H~-~~ei~~v~~G~~~~~i~~~--------~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 24 PQAAFPEHHHD-FHEIVIVEHGTGIHVFNGQ--------PYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred ccccccccccC-ceeEEEEecCceeeEecCC--------cccccCCcEEEECCCccchhhhc
Confidence 44557899996 7999999999999987543 48899999999999999986554
No 52
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.16 E-value=0.0012 Score=53.80 Aligned_cols=58 Identities=26% Similarity=0.241 Sum_probs=39.1
Q ss_pred eEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEE
Q 027369 95 VSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQF 163 (224)
Q Consensus 95 is~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~ 163 (224)
+++..++++.. +.-|.-..+|+.||++|++.+.. . ++ +...++||+++||+|.--.+.
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~--~----G~--~~~A~~GDvi~iPkGs~I~fs 134 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI--D----GQ--TVTAKPGDVIFIPKGSTITFS 134 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE--T----TE--EEEEETT-EEEE-TT-EEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE--C----CE--EEEEcCCcEEEECCCCEEEEe
Confidence 34444455543 45677778999999999998873 2 23 588999999999999865553
No 53
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.10 E-value=0.0059 Score=50.71 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=57.0
Q ss_pred CCCcCCceeCCCC-cEEEEEEecEEEEEEEecCCCC---CeeEEEEecCC--CEEEEcCCCeeEEEeCCCCcEEEEEE
Q 027369 104 PYGQNPPHTHPRA-TEILVVLEGTLYVGFVTSNQLN---NTLIAKVLNKG--DVFVFPIGMIHFQFNIGKTNAVAFAG 175 (224)
Q Consensus 104 pgg~~ppH~Hp~a-~Ei~yVl~G~~~v~~~~~~~~~---~~~~~~~L~~G--Dv~v~P~G~~H~~~N~G~~~a~~i~~ 175 (224)
+|-+...|+|..- .+++.|++|++..-.++-..++ .+.....|.+- ..+.||+|..|.+++.|++..+++..
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~ 131 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKV 131 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEEe
Confidence 8889999999887 8999999999999888754221 13445566654 89999999999999999987555443
No 54
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=97.08 E-value=0.013 Score=48.57 Aligned_cols=86 Identities=19% Similarity=0.148 Sum_probs=57.9
Q ss_pred ceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCC-CCe----eEEEEecCCCEEEEcCCCeeEEEeCC-C
Q 027369 94 GVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL-NNT----LIAKVLNKGDVFVFPIGMIHFQFNIG-K 167 (224)
Q Consensus 94 gis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~----~~~~~L~~GDv~v~P~G~~H~~~N~G-~ 167 (224)
...+..+...||...+.|=|..+.=++.|++|+++-......+. +.. .....+..|...+++.+.+|.+.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 35678899999999999999876678889999988876543321 011 11245678888899999999999987 8
Q ss_pred CcEEEEEEEcCC
Q 027369 168 TNAVAFAGFGSQ 179 (224)
Q Consensus 168 ~~a~~i~~~~s~ 179 (224)
++++-+=+++.+
T Consensus 154 ~~avSLHvYspP 165 (175)
T PF05995_consen 154 EPAVSLHVYSPP 165 (175)
T ss_dssp S-EEEEEEEES-
T ss_pred CCEEEEEEcCCC
Confidence 899888777654
No 55
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.92 E-value=0.0082 Score=48.77 Aligned_cols=66 Identities=26% Similarity=0.236 Sum_probs=46.9
Q ss_pred eEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEE
Q 027369 95 VSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 95 is~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i 173 (224)
+++....+++ ...|. .-+-+|+-||+||++.+...+. +..-.+||++++|+|.---+--.|. |.++
T Consensus 100 l~aG~m~~~~-~tf~w--tl~yDe~d~VlEGrL~V~~~g~--------tv~a~aGDvifiPKgssIefst~ge--a~fl 165 (176)
T COG4766 100 LGAGLMEMKN-TTFPW--TLNYDEIDYVLEGRLHVRIDGR--------TVIAGAGDVIFIPKGSSIEFSTTGE--AKFL 165 (176)
T ss_pred cccceeeecc-ccCcc--eecccceeEEEeeeEEEEEcCC--------eEecCCCcEEEecCCCeEEEeccce--EEEE
Confidence 4455555666 44443 3446899999999999986432 3677999999999998776655555 5443
No 56
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.76 E-value=0.0032 Score=48.97 Aligned_cols=59 Identities=24% Similarity=0.232 Sum_probs=43.9
Q ss_pred eEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEE
Q 027369 95 VSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQF 163 (224)
Q Consensus 95 is~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~ 163 (224)
+........||.. |++-...|+.++|+|++++.-.+ ++ ..++++||+++||+|..=-+.
T Consensus 45 ~~~GiWe~TpG~~---r~~y~~~E~chil~G~v~~T~d~-----Ge--~v~~~aGD~~~~~~G~~g~W~ 103 (116)
T COG3450 45 VETGIWECTPGKF---RVTYDEDEFCHILEGRVEVTPDG-----GE--PVEVRAGDSFVFPAGFKGTWE 103 (116)
T ss_pred eeEeEEEecCccc---eEEcccceEEEEEeeEEEEECCC-----Ce--EEEEcCCCEEEECCCCeEEEE
Confidence 5556667777754 45555699999999999986322 33 589999999999999865543
No 57
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.66 E-value=0.017 Score=48.14 Aligned_cols=80 Identities=14% Similarity=0.090 Sum_probs=59.0
Q ss_pred cCCCcCCceeCC--CCcEEEEEEecEEEEEEEecCCCC---CeeEEEEecC--CCEEEEcCCCeeEEEeCCCCcEEEEEE
Q 027369 103 APYGQNPPHTHP--RATEILVVLEGTLYVGFVTSNQLN---NTLIAKVLNK--GDVFVFPIGMIHFQFNIGKTNAVAFAG 175 (224)
Q Consensus 103 ~pgg~~ppH~Hp--~a~Ei~yVl~G~~~v~~~~~~~~~---~~~~~~~L~~--GDv~v~P~G~~H~~~N~G~~~a~~i~~ 175 (224)
.+|.+..+|+|. ...++++|++|++..-++|-..++ ++.....|.+ +..++||+|..|.+...+++ +.++-.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence 567789999983 368999999999999998865321 3555677876 66999999999999999876 444434
Q ss_pred EcCC-CCce
Q 027369 176 FGSQ-NPGV 183 (224)
Q Consensus 176 ~~s~-~pg~ 183 (224)
.+.. +|+.
T Consensus 131 ~~~~y~p~~ 139 (176)
T TIGR01221 131 CTDYYAPEY 139 (176)
T ss_pred CCCCcCccc
Confidence 3332 4543
No 58
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.65 E-value=0.033 Score=46.33 Aligned_cols=81 Identities=12% Similarity=0.099 Sum_probs=56.0
Q ss_pred cCCCcCCceeCCCC---cEEEEEEecEEEEEEEecCCC---CCeeEEEEecCCC--EEEEcCCCeeEEEeCCCCcEEEEE
Q 027369 103 APYGQNPPHTHPRA---TEILVVLEGTLYVGFVTSNQL---NNTLIAKVLNKGD--VFVFPIGMIHFQFNIGKTNAVAFA 174 (224)
Q Consensus 103 ~pgg~~ppH~Hp~a---~Ei~yVl~G~~~v~~~~~~~~---~~~~~~~~L~~GD--v~v~P~G~~H~~~N~G~~~a~~i~ 174 (224)
.+|.+..+|+|..- ..++.|++|++..-++|-..+ =.+.....|.+++ .++||+|..|.+...+++..+++-
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~ 130 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK 130 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence 34778999999864 689999999999999884321 1356678887775 799999999999999877444443
Q ss_pred EEcCCCCce
Q 027369 175 GFGSQNPGV 183 (224)
Q Consensus 175 ~~~s~~pg~ 183 (224)
.-..-+|+.
T Consensus 131 ~t~~y~p~~ 139 (176)
T PF00908_consen 131 VTNYYDPED 139 (176)
T ss_dssp ESS---GGG
T ss_pred cCCccCccc
Confidence 322234543
No 59
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.49 E-value=0.016 Score=49.00 Aligned_cols=72 Identities=22% Similarity=0.368 Sum_probs=49.9
Q ss_pred EEEEEEcCCC-cCCceeCCCCcEEEEEEecEEEEEEEecCC--------------C------------------CCeeEE
Q 027369 97 AARIDFAPYG-QNPPHTHPRATEILVVLEGTLYVGFVTSNQ--------------L------------------NNTLIA 143 (224)
Q Consensus 97 ~~rv~l~pgg-~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~--------------~------------------~~~~~~ 143 (224)
...+-+.++| ..+.|+.+ ..-++.+|+|+=++.+..+.. . ..+.+.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 4456677755 68999988 678999999999998876541 0 113567
Q ss_pred EEecCCCEEEEcCCCeeEEEeCCCCc
Q 027369 144 KVLNKGDVFVFPIGMIHFQFNIGKTN 169 (224)
Q Consensus 144 ~~L~~GDv~v~P~G~~H~~~N~G~~~ 169 (224)
.+|++||+++||+|..|+.+|...++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 89999999999999999999994444
No 60
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.62 E-value=0.17 Score=45.74 Aligned_cols=70 Identities=23% Similarity=0.274 Sum_probs=45.7
Q ss_pred EEEEEEEcCCC--cCCceeCCCCcEEEEEEecEEEEEEEecCC------C---------CCeeEEEEecCCCEEEEcCCC
Q 027369 96 SAARIDFAPYG--QNPPHTHPRATEILVVLEGTLYVGFVTSNQ------L---------NNTLIAKVLNKGDVFVFPIGM 158 (224)
Q Consensus 96 s~~rv~l~pgg--~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~------~---------~~~~~~~~L~~GDv~v~P~G~ 158 (224)
..+-+.+.|+| -+.||+=. .+-+++=++|+=+..+..... . .......+|+|||++++|+|.
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~ 192 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW 192 (319)
T ss_dssp EEEEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred cceEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence 34456678888 78999876 466677788887777665210 0 022456899999999999999
Q ss_pred eeEEEeCC
Q 027369 159 IHFQFNIG 166 (224)
Q Consensus 159 ~H~~~N~G 166 (224)
+|.....+
T Consensus 193 ~H~~~~~~ 200 (319)
T PF08007_consen 193 WHQAVTTD 200 (319)
T ss_dssp EEEEEESS
T ss_pred cCCCCCCC
Confidence 99999988
No 61
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.61 E-value=0.036 Score=49.77 Aligned_cols=89 Identities=27% Similarity=0.275 Sum_probs=62.6
Q ss_pred CCCeEEEEecccCcC-cccccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEE
Q 027369 74 RLGFKVTTVNVEQIP-GLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 74 ~~g~~v~~~~~~~~P-~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~ 152 (224)
..|..+..+|..+=- ...+.|.. .--+.||-...+|-|- .+-+..|.+|++++.+.+. ++...+||+|
T Consensus 241 ~dG~~~ryvNP~TGg~~mptI~a~--mqlL~~Gf~~~~~r~t-~s~iy~V~eGsg~~~Ig~~--------rf~~~~~D~f 309 (351)
T COG3435 241 FDGYKMRYVNPVTGGYAMPTIGAF--MQLLPPGFHGKAHRHT-DSTIYHVVEGSGYTIIGGE--------RFDWSAGDIF 309 (351)
T ss_pred CCcceEEEecCCCCCCcCchHHHH--HHhcCCcccCCceecc-CCEEEEEEecceeEEECCE--------EeeccCCCEE
Confidence 456666666653311 11122222 2336788788999997 4788889999999987432 4889999999
Q ss_pred EEcCCCeeEEEeCCCCcEEEEE
Q 027369 153 VFPIGMIHFQFNIGKTNAVAFA 174 (224)
Q Consensus 153 v~P~G~~H~~~N~G~~~a~~i~ 174 (224)
++|.=..|...|. .+.+++++
T Consensus 310 vVPsW~~~~~~~g-s~da~LFs 330 (351)
T COG3435 310 VVPSWAWHEHVNG-SEDAVLFS 330 (351)
T ss_pred EccCcceeecccC-CcceEEEe
Confidence 9999999988775 77787774
No 62
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.57 E-value=0.055 Score=41.47 Aligned_cols=62 Identities=29% Similarity=0.288 Sum_probs=46.3
Q ss_pred CCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcC--CCeeEEEeCCC-CcEEEE
Q 027369 105 YGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPI--GMIHFQFNIGK-TNAVAF 173 (224)
Q Consensus 105 gg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~--G~~H~~~N~G~-~~a~~i 173 (224)
+.-.++|-|.+-+-+.||++|++.-. |+.+ + ..+|++||+-++-+ |+.|...|.++ +++..+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G--~---~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l 103 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLG--N---RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL 103 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETTS--E---EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCCC--C---eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence 55679999987777889999999765 5542 3 37899999988876 68999999887 666654
No 63
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=95.46 E-value=0.12 Score=44.60 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=47.1
Q ss_pred EEEcCCCcCCceeCCCCcEEEEEEe-cEEEEEEEecCC--C-----------CCeeE------EEEecCCCEEEEcCCCe
Q 027369 100 IDFAPYGQNPPHTHPRATEILVVLE-GTLYVGFVTSNQ--L-----------NNTLI------AKVLNKGDVFVFPIGMI 159 (224)
Q Consensus 100 v~l~pgg~~ppH~Hp~a~Ei~yVl~-G~~~v~~~~~~~--~-----------~~~~~------~~~L~~GDv~v~P~G~~ 159 (224)
+.+.+|...|.|+|..-.|=++.-- |.+.+.+...++ + ++..+ .-+|+||+.+-+++|+.
T Consensus 92 m~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~y 171 (225)
T PF07385_consen 92 MIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGIY 171 (225)
T ss_dssp EEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTEE
T ss_pred eeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCCe
Confidence 5678899999999998888887775 577777765431 0 11111 24799999999999999
Q ss_pred eEEEeCCCCcEEEEEEEcC
Q 027369 160 HFQFNIGKTNAVAFAGFGS 178 (224)
Q Consensus 160 H~~~N~G~~~a~~i~~~~s 178 (224)
|++.-.+.. +++.-+|+
T Consensus 172 H~Fw~e~g~--vLigEVSt 188 (225)
T PF07385_consen 172 HWFWGEGGD--VLIGEVST 188 (225)
T ss_dssp EEEEE-TTS--EEEEEEEE
T ss_pred eeEEecCCC--EEEEeeec
Confidence 999876544 55555554
No 64
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=95.41 E-value=0.1 Score=49.06 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=37.5
Q ss_pred CceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEE
Q 027369 109 PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFA 174 (224)
Q Consensus 109 ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~ 174 (224)
..=.+-+++|++++-+|++++.- +- + ...+++||+++||+|+.+.+.-. +++..+.
T Consensus 139 ~~f~NaDGD~Li~~q~G~l~l~T--e~---G---~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi 194 (424)
T PF04209_consen 139 RAFRNADGDELIFPQQGSLRLET--EF---G---RLDVRPGDYVVIPRGTRFRVELP--GPARGYI 194 (424)
T ss_dssp EEEEESSEEEEEEEEES-EEEEE--TT---E---EEEE-TTEEEEE-TT--EEEE-S--SSEEEEE
T ss_pred cceEcCCCCEEEEEEECCEEEEe--cC---e---eEEEcCCeEEEECCeeEEEEEeC--CCceEEE
Confidence 44457789999999999999863 33 2 36799999999999999998665 4554443
No 65
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.24 E-value=0.068 Score=39.89 Aligned_cols=74 Identities=23% Similarity=0.293 Sum_probs=35.0
Q ss_pred EEEcCCCcCCceeCCCCc--EEEEEE--ecEEEEEEEecCCC---------------CCeeEEEEecCCCEEEEcCCCee
Q 027369 100 IDFAPYGQNPPHTHPRAT--EILVVL--EGTLYVGFVTSNQL---------------NNTLIAKVLNKGDVFVFPIGMIH 160 (224)
Q Consensus 100 v~l~pgg~~ppH~Hp~a~--Ei~yVl--~G~~~v~~~~~~~~---------------~~~~~~~~L~~GDv~v~P~G~~H 160 (224)
....+|+..++|.|+++. =+.||- ++...+.|.++... ....+....++||+++||.-+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 346788999999999752 222322 22222333333210 12244567899999999999999
Q ss_pred EEE-eCCCCcEEEE
Q 027369 161 FQF-NIGKTNAVAF 173 (224)
Q Consensus 161 ~~~-N~G~~~a~~i 173 (224)
... |.++++-+.+
T Consensus 85 ~v~p~~~~~~Risi 98 (101)
T PF13759_consen 85 GVPPNNSDEERISI 98 (101)
T ss_dssp EE----SSS-EEEE
T ss_pred eccCcCCCCCEEEE
Confidence 974 5666555554
No 66
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=95.07 E-value=0.026 Score=49.56 Aligned_cols=76 Identities=22% Similarity=0.228 Sum_probs=44.0
Q ss_pred eEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEE
Q 027369 95 VSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFA 174 (224)
Q Consensus 95 is~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~ 174 (224)
+.-..+.++.|---.+|+|+ ..|-.|||+|++..+..... + ...|.+|-.|.-|.+..|... .++++++++.
T Consensus 171 ~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~~---~---~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyI 242 (251)
T PF14499_consen 171 YTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGAS---N---FGTLDPGSYFGSPGHITHGIF-ITEDECVLYI 242 (251)
T ss_dssp E-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEE---T---TEEEEE-TT-EE--E-------EESS-EEEEE
T ss_pred eeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeecccC---C---CccccCCcccccCCccccccc-ccCCCEEEEE
Confidence 33445666666678999998 79999999999999653322 2 379999999999999999998 7888888886
Q ss_pred EEcC
Q 027369 175 GFGS 178 (224)
Q Consensus 175 ~~~s 178 (224)
-.+.
T Consensus 243 RtdG 246 (251)
T PF14499_consen 243 RTDG 246 (251)
T ss_dssp EESS
T ss_pred EECC
Confidence 5543
No 67
>COG1741 Pirin-related protein [General function prediction only]
Probab=94.95 E-value=0.088 Score=46.87 Aligned_cols=60 Identities=30% Similarity=0.395 Sum_probs=49.3
Q ss_pred EEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcC--CCeeEEEeC
Q 027369 99 RIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPI--GMIHFQFNI 165 (224)
Q Consensus 99 rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~--G~~H~~~N~ 165 (224)
..++.||.-++||-|.+-+-+.||++|+++-. |+.+ |+ ..+++||+-..-+ |..|.-+|.
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~G--n~---~~i~pGdvqwMTAG~GI~HSE~~~ 109 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLG--NK---GVIRPGDVQWMTAGSGIVHSEMNP 109 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCC--ce---eeecccceeEEcCCCceeecccCC
Confidence 45689999999999998777889999998875 4442 44 7899999999886 579998886
No 68
>PF12852 Cupin_6: Cupin
Probab=94.92 E-value=0.14 Score=42.10 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=35.2
Q ss_pred cEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCC
Q 027369 117 TEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIG 166 (224)
Q Consensus 117 ~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G 166 (224)
.-+.+|++|+.++.+.+.. . ...|++||++++|+|..|.+....
T Consensus 36 ~~fh~V~~G~~~l~~~~~~----~--~~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGGG----E--PIRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred eEEEEEECCeEEEEEcCCC----C--eEEecCCCEEEEcCCCCeEeCCCC
Confidence 5677899999999865421 1 489999999999999999985433
No 69
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=94.73 E-value=0.29 Score=46.12 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=43.6
Q ss_pred CCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEE
Q 027369 108 NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFA 174 (224)
Q Consensus 108 ~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~ 174 (224)
...-.+-+++|++++-+|++.+.-.- + ...+++||++|||+|+.+.+. ..+.++..+.
T Consensus 146 ~~~f~NaDGD~Livpq~G~l~i~TEf-----G---~L~v~pgei~VIPRG~~frv~-l~~gp~rgyi 203 (438)
T PRK05341 146 DRYFYNADGELLIVPQQGRLRLATEL-----G---VLDVEPGEIAVIPRGVKFRVE-LPDGPARGYV 203 (438)
T ss_pred cceeecCCCCEEEEEEeCCEEEEEec-----c---ceEecCCCEEEEcCccEEEEe-cCCCCeeEEE
Confidence 44556778999999999999986432 2 278899999999999998875 3345555543
No 70
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=94.47 E-value=0.39 Score=45.18 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=43.2
Q ss_pred CCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEE
Q 027369 108 NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 108 ~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i 173 (224)
...-.+-+++|++++-+|++.+.-.- + ...+++||+++||+|+.+.+.-.| ++..+
T Consensus 140 ~~~f~NaDGD~Livpq~G~l~i~TEf-----G---~L~v~pgei~VIPRG~~frv~l~g--p~rgy 195 (429)
T TIGR01015 140 NRAFYNADGDFLIVPQQGALLITTEF-----G---RLLVEPNEICVIPRGVRFRVTVLE--PARGY 195 (429)
T ss_pred cceeeccCCCEEEEEEeCcEEEEEec-----c---ceEecCCCEEEecCccEEEEeeCC--CceEE
Confidence 44556678999999999999987433 2 268999999999999999876554 55443
No 71
>PLN02658 homogentisate 1,2-dioxygenase
Probab=94.37 E-value=0.43 Score=45.00 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=42.5
Q ss_pred CceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEE
Q 027369 109 PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFA 174 (224)
Q Consensus 109 ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~ 174 (224)
..-.+-+++|++++-+|++.+.-.- ++ -.+++||+++||+|+.+.+.- -+.++..+.
T Consensus 140 ~~f~NaDGD~Livpq~G~l~i~TEf-----G~---L~v~pgei~VIPRG~~frv~l-~~gp~rgyv 196 (435)
T PLN02658 140 CAFCNADGDFLIVPQQGRLWIKTEL-----GK---LQVSPGEIVVIPRGFRFAVDL-PDGPSRGYV 196 (435)
T ss_pred ceeecCCCCEEEEEEeCCEEEEEec-----cc---eEecCCCEEEecCccEEEEec-CCCCeeEEE
Confidence 3356778999999999999986432 22 688999999999999987643 234555543
No 72
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=94.11 E-value=0.1 Score=38.95 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=22.5
Q ss_pred CeeEEEEecCCCEEEEcCCCeeEEEeCCCC
Q 027369 139 NTLIAKVLNKGDVFVFPIGMIHFQFNIGKT 168 (224)
Q Consensus 139 ~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~ 168 (224)
-+.+..+-++||.+++|+|..|+..|.|..
T Consensus 78 i~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 78 IPVYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp S--EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred cccccceECCCCEEEECCCceEEEEeCCce
Confidence 356778889999999999999999999974
No 73
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=94.06 E-value=0.27 Score=41.79 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=45.4
Q ss_pred EEEEEEcCCCcCCceeCCCC--cEEEEEE--ecEEEEEEEecCCC---------------CCeeEEEEecCCCEEEEcCC
Q 027369 97 AARIDFAPYGQNPPHTHPRA--TEILVVL--EGTLYVGFVTSNQL---------------NNTLIAKVLNKGDVFVFPIG 157 (224)
Q Consensus 97 ~~rv~l~pgg~~ppH~Hp~a--~Ei~yVl--~G~~~v~~~~~~~~---------------~~~~~~~~L~~GDv~v~P~G 157 (224)
+-...+.+||....|.||++ +=+.||- +|.....|.++... ........-++||+++||.-
T Consensus 98 ~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~ 177 (201)
T TIGR02466 98 AWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESW 177 (201)
T ss_pred EeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCC
Confidence 34456788999999999975 2233333 12122222221100 00011234489999999999
Q ss_pred CeeEEE-eCCCCcEEEEEEEc
Q 027369 158 MIHFQF-NIGKTNAVAFAGFG 177 (224)
Q Consensus 158 ~~H~~~-N~G~~~a~~i~~~~ 177 (224)
+.|... |.|+++-+.+ +||
T Consensus 178 L~H~v~p~~~~~~RISi-SFN 197 (201)
T TIGR02466 178 LRHEVPPNESEEERISV-SFN 197 (201)
T ss_pred CceecCCCCCCCCEEEE-EEe
Confidence 999964 6666555544 443
No 74
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=93.79 E-value=0.23 Score=40.56 Aligned_cols=81 Identities=20% Similarity=0.373 Sum_probs=46.2
Q ss_pred cCcCcccc-cce-EEEEEEEcCCCcCCceeCCCCcEEEE----EE-ecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCC
Q 027369 85 EQIPGLNT-LGV-SAARIDFAPYGQNPPHTHPRATEILV----VL-EGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIG 157 (224)
Q Consensus 85 ~~~P~L~~-lgi-s~~rv~l~pgg~~ppH~Hp~a~Ei~y----Vl-~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G 157 (224)
+++|...+ ..+ .+....+.||+.+.||.-+....+-+ ++ .+...+.+. ++ +...++|++++|--.
T Consensus 68 ~~lp~~~~~~~~~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~------~~--~~~w~~G~~~~fD~s 139 (163)
T PF05118_consen 68 EQLPGVTGGCPLGRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVG------GE--TRHWREGECWVFDDS 139 (163)
T ss_dssp CCSHHHHCSTTCEEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEET------TE--EEB--CTEEEEE-TT
T ss_pred HhCcccccccchhhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEEC------Ce--EEEeccCcEEEEeCC
Confidence 45555543 222 34445689999999998874322211 12 122222221 22 477899999999999
Q ss_pred CeeEEEeCCCCcEEEE
Q 027369 158 MIHFQFNIGKTNAVAF 173 (224)
Q Consensus 158 ~~H~~~N~G~~~a~~i 173 (224)
..|...|.|+++-+.+
T Consensus 140 ~~H~~~N~~~~~Rv~L 155 (163)
T PF05118_consen 140 FEHEVWNNGDEDRVVL 155 (163)
T ss_dssp S-EEEEESSSS-EEEE
T ss_pred EEEEEEeCCCCCEEEE
Confidence 9999999999876665
No 75
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.71 E-value=0.31 Score=43.03 Aligned_cols=62 Identities=16% Similarity=0.065 Sum_probs=47.3
Q ss_pred cCCCcCCceeC-CCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCC-CEEEEcCCCeeEEEeCC
Q 027369 103 APYGQNPPHTH-PRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKG-DVFVFPIGMIHFQFNIG 166 (224)
Q Consensus 103 ~pgg~~ppH~H-p~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~G-Dv~v~P~G~~H~~~N~G 166 (224)
-|++...+|.| +...|.+.|++|++.+.+.++++ .......+.+. +.-++|++..|...-..
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g--~~~~~~~l~~~~~~~~i~p~~wh~v~~~s 82 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDG--EELSEHIFDAENQPPFIEPQAWHRIEAAS 82 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCC--CeeeEEEEecCCCCceeCCcceEEEEEcC
Confidence 37888999999 56679999999999998877653 33444556554 56579999999987653
No 76
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=93.59 E-value=0.25 Score=41.95 Aligned_cols=88 Identities=22% Similarity=0.214 Sum_probs=66.9
Q ss_pred CCCeEEEEecccCcCcccccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEE
Q 027369 74 RLGFKVTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFV 153 (224)
Q Consensus 74 ~~g~~v~~~~~~~~P~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v 153 (224)
..|+++..+...+ .-...++++.+.||..+|-|+|- +-|.+.|++|... +++ -++.+||...
T Consensus 112 ~~G~rv~~v~l~~-----dds~~V~llki~~g~s~P~HtH~-G~E~t~vl~G~~s----de~--------G~y~vgD~~~ 173 (216)
T COG3806 112 GPGGRVEPVRLPT-----DDSRRVALLKIEPGRSFPDHTHV-GIERTAVLEGAFS----DEN--------GEYLVGDFTL 173 (216)
T ss_pred cCCcceeecccCC-----CCCceeEEEEeccCccccccccc-ceEEEEEEeeccc----cCC--------CccccCceee
Confidence 3455555554333 22578999999999999999997 7999999999754 454 3678999999
Q ss_pred EcCCCeeEEEeCCCCcEEEEEEEcCC
Q 027369 154 FPIGMIHFQFNIGKTNAVAFAGFGSQ 179 (224)
Q Consensus 154 ~P~G~~H~~~N~G~~~a~~i~~~~s~ 179 (224)
-+.+.-|.-.-..+.++..++++.-+
T Consensus 174 ~d~~v~H~piv~~~~eClcl~al~~~ 199 (216)
T COG3806 174 ADGTVQHSPIVLPPGECLCLAALDGP 199 (216)
T ss_pred cCCccccccccCCCCCceEEEEcCCC
Confidence 99999998656667778888877643
No 77
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=93.48 E-value=0.26 Score=43.12 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=35.2
Q ss_pred CcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 027369 116 ATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 116 a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~ 167 (224)
+-++.++++|++.+... ++ .+.+++||++++|+|.+|......+
T Consensus 49 ~~~i~~~~~G~~~~~~~------~~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 49 GYILNLTIRGQGVIFNG------GR--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred ceEEEEEEeccEEEecC------Ce--eEecCCCCEEEECCCCceeeccCCC
Confidence 56889999999998642 22 4899999999999999998655443
No 78
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.63 E-value=0.09 Score=50.00 Aligned_cols=90 Identities=22% Similarity=0.343 Sum_probs=58.5
Q ss_pred CCCeEEEEecccCcCcc--------ccc-c-eEEEEEEEcCCC--cCCceeCCCCcEEEEEEecEEEEEEEecCC-----
Q 027369 74 RLGFKVTTVNVEQIPGL--------NTL-G-VSAARIDFAPYG--QNPPHTHPRATEILVVLEGTLYVGFVTSNQ----- 136 (224)
Q Consensus 74 ~~g~~v~~~~~~~~P~L--------~~l-g-is~~rv~l~pgg--~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~----- 136 (224)
..|-++...+.++|-.- +.. | +.-+-+.+.|-| -.+|||-. -+-+++=++|+=+..+-.+.-
T Consensus 285 q~~cSiqllnPqty~drlwq~cevlqeqFgc~vGaNvYLTPagSqGfaPHyDd-IeaFvlQvEGrK~Wrly~P~~~~eel 363 (629)
T KOG3706|consen 285 QKGCSIQLLNPQTYKDRLWQICEVLQEQFGCLVGANVYLTPAGSQGFAPHYDD-IEAFVLQVEGRKHWRLYHPTVPLEEL 363 (629)
T ss_pred hcCceEEeeCchhHHHHHHHHHHHHHHHhccccccceeecCCCCCCCCCchhh-hhhhhheeccceeeEeecCCCcHhhh
Confidence 35666777776655321 110 1 122335555544 48999985 677778899997776654420
Q ss_pred ------------CCCeeEEEEecCCCEEEEcCCCeeEEEe
Q 027369 137 ------------LNNTLIAKVLNKGDVFVFPIGMIHFQFN 164 (224)
Q Consensus 137 ------------~~~~~~~~~L~~GDv~v~P~G~~H~~~N 164 (224)
-+..++...|++||+++||+|.+|....
T Consensus 364 ~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t 403 (629)
T KOG3706|consen 364 ALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADT 403 (629)
T ss_pred hhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccc
Confidence 0234667889999999999999998644
No 79
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=92.24 E-value=2.4 Score=31.82 Aligned_cols=64 Identities=16% Similarity=0.092 Sum_probs=40.8
Q ss_pred EEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEE
Q 027369 101 DFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAG 175 (224)
Q Consensus 101 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~ 175 (224)
.+.||. .+....+.|++-|++|++++.+-++. . .+++++|+.|.+|.+.---++-. ++.-.++.
T Consensus 29 Vm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~----e--w~~~~aGesF~VpanssF~v~v~--~~~~Y~C~ 92 (94)
T PF06865_consen 29 VMLPGE---YTFGTSAPERMEVVSGELEVKLPGED----E--WQTYSAGESFEVPANSSFDVKVK--EPTAYLCS 92 (94)
T ss_dssp EE-SEC---EEEEESS-EEEEEEESEEEEEETT-S----S---EEEETT-EEEE-TTEEEEEEES--S-EEEEEE
T ss_pred EEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCc----c--cEEeCCCCeEEECCCCeEEEEEC--cceeeEEE
Confidence 355665 34444578999999999999985543 2 58899999999999987766553 34444443
No 80
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=92.15 E-value=0.79 Score=38.96 Aligned_cols=90 Identities=19% Similarity=0.141 Sum_probs=62.7
Q ss_pred cccccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCC---C----CCeeEEE------Ee-cCCC-EEE
Q 027369 89 GLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQ---L----NNTLIAK------VL-NKGD-VFV 153 (224)
Q Consensus 89 ~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~---~----~~~~~~~------~L-~~GD-v~v 153 (224)
...+..+++...-+.||..+|+|=||+-+-+.-|+.|++.+.-.+--. . ..+.... ++ .+++ .+.
T Consensus 38 iyE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL 117 (200)
T PF07847_consen 38 IYEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVL 117 (200)
T ss_pred EEECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEE
Confidence 345557888889999999999999998888888999999997654211 0 0011111 12 2333 455
Q ss_pred EcC--CCeeEEEeCCCCcEEEEEEEcCC
Q 027369 154 FPI--GMIHFQFNIGKTNAVAFAGFGSQ 179 (224)
Q Consensus 154 ~P~--G~~H~~~N~G~~~a~~i~~~~s~ 179 (224)
.|. |-+|.+.+.+ +|+.++-++.-.
T Consensus 118 ~P~~ggNiH~f~a~~-~p~AflDIL~PP 144 (200)
T PF07847_consen 118 YPTSGGNIHEFTALT-GPCAFLDILAPP 144 (200)
T ss_pred ccCCCCeeEEEEeCC-CCeEEEEEccCC
Confidence 665 4899999987 899888888643
No 81
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=91.84 E-value=1 Score=39.41 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=44.5
Q ss_pred ceEEEEEEEcCCCcC-----CceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 027369 94 GVSAARIDFAPYGQN-----PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 94 gis~~rv~l~pgg~~-----ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~ 167 (224)
++.+.++...+..+. ..|.+.+.-.++++++|++.+... ++ ...+++||++++|.+.+|...-.++
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~------g~--~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQD------DR--QVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEEC------Ce--EEEEcCCCEEEEECCCCcEeecCCC
Confidence 355666665554321 234444445577789999988753 22 4789999999999999998755444
No 82
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=91.82 E-value=0.82 Score=38.67 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=47.7
Q ss_pred EEEEcCCCcCCceeCCCCcEEEEEE-ecEEEEEEEecC---CC----------CCeeE------EEEecCCCEEEEcCCC
Q 027369 99 RIDFAPYGQNPPHTHPRATEILVVL-EGTLYVGFVTSN---QL----------NNTLI------AKVLNKGDVFVFPIGM 158 (224)
Q Consensus 99 rv~l~pgg~~ppH~Hp~a~Ei~yVl-~G~~~v~~~~~~---~~----------~~~~~------~~~L~~GDv~v~P~G~ 158 (224)
.+...+|.+.|.|.|++-.|=++=- .|++.+..-..+ +. +++.. .-.|+||+.+.+|+|+
T Consensus 90 iM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~ 169 (225)
T COG3822 90 IMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPGL 169 (225)
T ss_pred eEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCCc
Confidence 3557799999999999655543322 334444332211 00 01111 2479999999999999
Q ss_pred eeEEEeCCCCcEEEEEEEcCC
Q 027369 159 IHFQFNIGKTNAVAFAGFGSQ 179 (224)
Q Consensus 159 ~H~~~N~G~~~a~~i~~~~s~ 179 (224)
.|++..-+.. +++.-.++-
T Consensus 170 ~HsFwae~g~--vlvgEvSsv 188 (225)
T COG3822 170 YHSFWAEEGG--VLVGEVSSV 188 (225)
T ss_pred eeeeeecCCc--EEEEEEeec
Confidence 9998775443 444444443
No 83
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.67 E-value=2.1 Score=39.55 Aligned_cols=72 Identities=14% Similarity=0.085 Sum_probs=48.9
Q ss_pred cceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEE
Q 027369 93 LGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 172 (224)
Q Consensus 93 lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~ 172 (224)
.|+.+....+..+-....-+.-+.+|++++-+|++++.-.- + ..++++||+.+||+|+....+-.+.+ +..
T Consensus 123 ~g~~i~~y~~n~sm~~~~f~NADge~Livpq~G~l~l~te~-----G---~l~v~pgeiavIPRG~~frve~~~~~-~rg 193 (427)
T COG3508 123 DGVAIHVYKVNESMTKRFFRNADGELLIVPQQGELRLKTEL-----G---VLEVEPGEIAVIPRGTTFRVELKDGE-ARG 193 (427)
T ss_pred CceEEEEEEccccchhhhhhcCCCCEEEEeecceEEEEEee-----c---eEEecCCcEEEeeCCceEEEEecCCc-eEE
Confidence 34544433333332235556778899999999999985432 1 37899999999999999887765444 444
Q ss_pred E
Q 027369 173 F 173 (224)
Q Consensus 173 i 173 (224)
+
T Consensus 194 y 194 (427)
T COG3508 194 Y 194 (427)
T ss_pred E
Confidence 3
No 84
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=91.61 E-value=0.85 Score=37.63 Aligned_cols=78 Identities=24% Similarity=0.261 Sum_probs=48.4
Q ss_pred eEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEE---ec---CCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCC
Q 027369 95 VSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFV---TS---NQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKT 168 (224)
Q Consensus 95 is~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~---~~---~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~ 168 (224)
+++..+++.||...|+|-|- -.-++=|+.|.=+-.+- .+ .++ .+ .+.+.+|++-.-| |-+|...|.|..
T Consensus 73 ltV~~~t~~PG~~~p~HnH~-~wglVgil~G~E~n~~y~~~~~~~~~P~-~q--dk~~apgeV~lSp-gdihsv~n~~sd 147 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHL-MWGLVGILWGGETNFIYPLAGEEVDEPE-RQ--DKFAAPGEVHLSP-GDIHSVANTGSD 147 (191)
T ss_pred EEEEEEEeCCCcccCCcccc-hheeeeeeecccccceecccCCCCCCcc-hh--hhhcCcceEeeCC-CCeeeecccCCC
Confidence 57889999999999999995 67777788885433221 11 011 11 2456666666333 666777766655
Q ss_pred cEEEEEEEc
Q 027369 169 NAVAFAGFG 177 (224)
Q Consensus 169 ~a~~i~~~~ 177 (224)
....|-++-
T Consensus 148 rs~aiHvy~ 156 (191)
T COG5553 148 RSGAIHVYL 156 (191)
T ss_pred ccceEEEEe
Confidence 444444443
No 85
>PRK10579 hypothetical protein; Provisional
Probab=91.57 E-value=4.6 Score=30.28 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=38.3
Q ss_pred eeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEe
Q 027369 111 HTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN 164 (224)
Q Consensus 111 H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N 164 (224)
+.-..+.|++-|++|++++.+-+++ . .+.+++|+.|.+|.+.---++.
T Consensus 36 ~F~T~~~E~MeivsG~l~V~Lpg~~----e--w~~~~aG~sF~VpanssF~l~v 83 (94)
T PRK10579 36 TFSTAEPEEMTVISGALNVLLPGAT----D--WQVYEAGEVFNVPGHSEFHLQV 83 (94)
T ss_pred EEcCCCcEEEEEEeeEEEEECCCCc----c--cEEeCCCCEEEECCCCeEEEEE
Confidence 3444578999999999999986543 1 5799999999999998766654
No 86
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=91.25 E-value=0.43 Score=41.01 Aligned_cols=57 Identities=18% Similarity=0.370 Sum_probs=47.0
Q ss_pred cCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEe
Q 027369 103 APYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN 164 (224)
Q Consensus 103 ~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N 164 (224)
.|+..---|..+ ..|++|-.+|...+.+++. .+.....+++||++..|..++|.-.-
T Consensus 41 GPN~RkdyHiee-geE~FyQ~KGdMvLKVie~----g~~rDivI~qGe~flLParVpHSPqR 97 (279)
T KOG3995|consen 41 GPNTRKDYHIEE-GEEVFYQLKGDMVLKVLEQ----GKHRDVVIRQGEIFLLPARVPHSPQR 97 (279)
T ss_pred CCCcccccccCC-cchhheeecCceEEeeecc----CcceeeEEecCcEEEeccCCCCChhh
Confidence 444455678888 7999999999999999986 34457889999999999999998543
No 87
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=90.90 E-value=1.8 Score=38.67 Aligned_cols=82 Identities=21% Similarity=0.281 Sum_probs=53.6
Q ss_pred ceEEEEEEEcCCC---cCCceeCCCCcEEEE---EEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 027369 94 GVSAARIDFAPYG---QNPPHTHPRATEILV---VLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 94 gis~~rv~l~pgg---~~ppH~Hp~a~Ei~y---Vl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~ 167 (224)
.+-+....+.||+ ..|||.|.|..|..+ +-++...+.+..+- +......++-+|+++.|+=.+|.- .|.
T Consensus 174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~p---dETrh~~v~n~~aVisP~wsih~g--~gt 248 (276)
T PRK00924 174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEP---QETRHIVVHNEQAVISPSWSIHSG--VGT 248 (276)
T ss_pred cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCc---cceeeEEEECCCEEECCCcceecC--cCc
Confidence 4666667789999 369999997777444 22332223332221 222236789999999999999974 566
Q ss_pred CcEEEEEEEcCCC
Q 027369 168 TNAVAFAGFGSQN 180 (224)
Q Consensus 168 ~~a~~i~~~~s~~ 180 (224)
..=.+|++-.-+|
T Consensus 249 ~~y~fiw~m~gen 261 (276)
T PRK00924 249 SNYTFIWGMAGEN 261 (276)
T ss_pred cccEEEEEecccC
Confidence 6667777765544
No 88
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=89.73 E-value=2.1 Score=32.07 Aligned_cols=66 Identities=21% Similarity=0.190 Sum_probs=42.1
Q ss_pred EEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEE
Q 027369 98 ARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFA 174 (224)
Q Consensus 98 ~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~ 174 (224)
..+.++||+.......+..+-++||++|++.+. . .+ ..+.+|+++++..|..=.+.+.+ +.+.++.
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~---~----~~---~~~~~~~~~~l~~g~~i~~~a~~-~~a~~ll 67 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG---G----EE---DPLEAGQLVVLEDGDEIELTAGE-EGARFLL 67 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET---T----TT---EEEETTEEEEE-SECEEEEEESS-SSEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC---C----Cc---ceECCCcEEEECCCceEEEEECC-CCcEEEE
Confidence 467888998754333444578999999998762 2 11 57899999999966655555553 5666553
No 89
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.59 E-value=1.9 Score=39.95 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=51.1
Q ss_pred ceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEE
Q 027369 94 GVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAF 173 (224)
Q Consensus 94 gis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i 173 (224)
..++.+++++.|...-.-.-+ +.-++.|++|++++.-.+. . ...+++|||++||+...-.+ +..+++...+
T Consensus 332 eF~v~~~~v~~g~~~~~~~~~-~~SIllv~~G~g~l~~~t~----~---~~~v~rG~V~fI~a~~~i~~-~~~sd~~~~y 402 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGVD-GPSILLVLKGSGILKTDTD----S---KILVNRGDVLFIPANHPIHL-SSSSDPFLGY 402 (411)
T ss_pred ceeEEEeecCCCceEEeecCC-CceEEEEEecceEEecCCC----C---ceeeccCcEEEEcCCCCcee-eccCcceeee
Confidence 456777888886643222233 6789999999999975432 2 47899999999999876533 4445555555
Q ss_pred EEEc
Q 027369 174 AGFG 177 (224)
Q Consensus 174 ~~~~ 177 (224)
-+|.
T Consensus 403 rAf~ 406 (411)
T KOG2757|consen 403 RAFS 406 (411)
T ss_pred eccc
Confidence 5543
No 90
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=89.53 E-value=2.4 Score=39.52 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=40.4
Q ss_pred eEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEE
Q 027369 95 VSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQF 163 (224)
Q Consensus 95 is~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~ 163 (224)
.++.++++..+.. +...+..++++|++|++++.. . +. +..|++|+++++|.+......
T Consensus 321 F~~~~~~l~~~~~---~~~~~~~~Illv~~G~~~i~~--~----~~--~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 321 FAFSLHDLSDQPT---TLSQQSAAILFCVEGEAVLWK--G----EQ--QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred cEEEEEEECCceE---EecCCCcEEEEEEcceEEEEe--C----Ce--EEEECCCCEEEEeCCCccEEE
Confidence 4566666654422 222346799999999999853 2 12 378999999999998776654
No 91
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=89.27 E-value=4.2 Score=29.64 Aligned_cols=64 Identities=17% Similarity=0.031 Sum_probs=43.0
Q ss_pred CCCcCCceeCCCC-cEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCC
Q 027369 104 PYGQNPPHTHPRA-TEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKT 168 (224)
Q Consensus 104 pgg~~ppH~Hp~a-~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~ 168 (224)
|.++...|.-..+ ..-+.|++|++.+...++.++ -......+.+|+.-++++...|.+.-.++.
T Consensus 12 P~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~-~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D 76 (82)
T PF09313_consen 12 PAALLERHNTKAGTWGKLRVLEGELKFYGLDEEGE-EPEEEVFIPAGQPPVIEPQQWHRVEPLSDD 76 (82)
T ss_dssp -GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT--SESEEEEEETTEEEEE-TT-EEEEEESSTT
T ss_pred cHHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCC-ceeEEEEeCCCCCceeCCCceEEEEECCCC
Confidence 4455566654432 256779999999998877521 112346789999999999999999877763
No 92
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=87.62 E-value=3.8 Score=28.21 Aligned_cols=56 Identities=18% Similarity=0.084 Sum_probs=40.3
Q ss_pred EEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEe
Q 027369 101 DFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN 164 (224)
Q Consensus 101 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N 164 (224)
.+.||.....+.. +...+.|.+|++.++..... ..+.|++||.+.+++|..-++.-
T Consensus 3 ~L~~g~~~~lr~~--~~~~l~v~~G~vWlT~~g~~------~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 3 ELAPGETLSLRAA--AGQRLRVESGRVWLTREGDP------DDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EeCCCceEEeEcC--CCcEEEEccccEEEECCCCC------CCEEECCCCEEEeCCCCEEEEEe
Confidence 4667776666544 34449999999999864321 24899999999999998766543
No 93
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=87.26 E-value=12 Score=33.03 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=50.8
Q ss_pred eEEEEecccCcCcccccceEEEEEEEcCCCc---CCceeCCCC--------cEEEEEE----ecEEEEEEEecCCCCCee
Q 027369 77 FKVTTVNVEQIPGLNTLGVSAARIDFAPYGQ---NPPHTHPRA--------TEILVVL----EGTLYVGFVTSNQLNNTL 141 (224)
Q Consensus 77 ~~v~~~~~~~~P~L~~lgis~~rv~l~pgg~---~ppH~Hp~a--------~Ei~yVl----~G~~~v~~~~~~~~~~~~ 141 (224)
-.|......+.+. .-.+-+..+. .|+|. .|||.|++. +|+.|-. +|-+.-.+.+..+ ..-
T Consensus 135 R~V~~~i~~~~~~--~~~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~--~~d 209 (261)
T PF04962_consen 135 RTVRNIIDPNVPP--ASRLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDP--QLD 209 (261)
T ss_dssp EEEEEEESTTT-----SS-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTS--SSE
T ss_pred EEEEEeeCCCCcc--cceEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCC--CCc
Confidence 3455555555552 2235555554 77663 699999863 5666653 3444433333322 112
Q ss_pred EEEEecCCCEEEEcCCCeeEE-EeCCCCcEEEEEEEcCCC
Q 027369 142 IAKVLNKGDVFVFPIGMIHFQ-FNIGKTNAVAFAGFGSQN 180 (224)
Q Consensus 142 ~~~~L~~GDv~v~P~G~~H~~-~N~G~~~a~~i~~~~s~~ 180 (224)
....++-||++.+|+| .|-+ .-.|... ..+++....+
T Consensus 210 ~~~~V~~~d~V~iP~g-yHp~~aapGy~~-Yylw~maG~~ 247 (261)
T PF04962_consen 210 EHYVVRNGDAVLIPSG-YHPVVAAPGYDM-YYLWVMAGEN 247 (261)
T ss_dssp EEEEEETTEEEEESTT-B-SEEEEEESSE-EEEEEEESSS
T ss_pred EEEEEECCCEEEeCCC-CCCcCcCCCcCc-EEEEEEEcCC
Confidence 2578999999999999 2332 2345543 4666666555
No 94
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=86.94 E-value=4.2 Score=36.32 Aligned_cols=59 Identities=24% Similarity=0.286 Sum_probs=41.1
Q ss_pred ceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEE
Q 027369 94 GVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQF 163 (224)
Q Consensus 94 gis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~ 163 (224)
-.++.++++...... ..+ ....+++|++|++++.. . +. +..|++|+.+++|++.-.+..
T Consensus 234 ~F~~~~~~~~~~~~~--~~~-~~~~il~v~~G~~~i~~--~----~~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 234 YFSVYKWDISGKAEF--IQQ-QSALILSVLEGSGRIKS--G----GK--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CeEEEEEEeCCceee--ccC-CCcEEEEEEcceEEEEE--C----CE--EEEEecccEEEEccCCccEEE
Confidence 466777777543211 112 36789999999999853 2 22 478999999999999866554
No 95
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=86.31 E-value=7.3 Score=31.91 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=38.7
Q ss_pred EEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEE
Q 027369 98 ARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 98 ~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~ 154 (224)
....+++|..+-..-.+ .+.+.+|++|.+.+...+.++ +......+.+||++-.
T Consensus 21 ~~~~~~kg~~l~~~g~~-~~~~y~V~~G~v~~~~~~~~g--~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 21 HIHKYPAKSTLIHAGEK-AETLYYIVKGSVAVLIKDEEG--KEMILSYLNQGDFIGE 74 (211)
T ss_pred eEEEeCCCCEEEeCCCC-CCeEEEEEeCEEEEEEECCCC--CEEEEEEcCCCCEEee
Confidence 45678888866433333 578999999999998766552 4455567899999843
No 96
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=86.22 E-value=7.6 Score=32.84 Aligned_cols=63 Identities=21% Similarity=0.211 Sum_probs=44.7
Q ss_pred ceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCe
Q 027369 94 GVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMI 159 (224)
Q Consensus 94 gis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~ 159 (224)
+.......+++|..+-..-.+ ...+.+|++|.+.+...++++ .......+.+||++-+..+..
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd~-~~~ly~I~~G~vkl~~~~~~G--~e~i~~~~~~Gd~fG~~~~~~ 97 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGEP-ADYVYQVESGAVRTYRLLSDG--RRQIGAFHLPGDVFGLESGST 97 (230)
T ss_pred cceeeeEEECCCCEEECCCCC-CCeEEEEEeCEEEEEEECCCC--cEEEEEEecCCceecccCCCc
Confidence 456677788898865443333 578999999999998877663 444556679999886655443
No 97
>PLN02288 mannose-6-phosphate isomerase
Probab=86.15 E-value=2.1 Score=40.10 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=39.4
Q ss_pred ceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCC
Q 027369 94 GVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGM 158 (224)
Q Consensus 94 gis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~ 158 (224)
..++.++.+.++.......+ ++.++++|++|++++.. .. ......|++|+++++|.+.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~--~~----~~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLST--GS----SEDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEec--CC----ccceEEEeceeEEEEeCCC
Confidence 46677888877753221112 36799999999999853 21 1113569999999999864
No 98
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=85.53 E-value=2.3 Score=29.35 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=33.0
Q ss_pred EEcCCCcC-CceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEE
Q 027369 101 DFAPYGQN-PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 101 ~l~pgg~~-ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~ 152 (224)
.+.+|..+ ..+-+ ...+.+|++|.+.+...+.++ .......+.+||++
T Consensus 3 ~~~~g~~i~~~g~~--~~~~~~i~~G~v~~~~~~~~~--~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQGDP--CDHIYIILSGEVKVSSINEDG--KEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEETTSB--ESEEEEEEESEEEEEEETTTS--EEEEEEEEETTEEE
T ss_pred EECCCCEEEeCCCc--CCEEEEEEECceEEEeceecc--eeeeecceeeeccc
Confidence 45555543 22322 589999999999999877652 23345788899886
No 99
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=85.25 E-value=2.2 Score=39.43 Aligned_cols=78 Identities=21% Similarity=0.254 Sum_probs=48.7
Q ss_pred cCcccccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCC--------------CCeeEEEEecCCCEE
Q 027369 87 IPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL--------------NNTLIAKVLNKGDVF 152 (224)
Q Consensus 87 ~P~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~--------------~~~~~~~~L~~GDv~ 152 (224)
+|.-..-.+.+. ..++||.+.+|+-+. +-+++=..|+=+..+...... .......+|.|||+.
T Consensus 113 lP~wr~ddiMIS--~a~~GGgvg~H~D~Y-DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiL 189 (383)
T COG2850 113 LPDWRIDDIMIS--FAAPGGGVGPHFDQY-DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDIL 189 (383)
T ss_pred CccccccceEEE--EecCCCccCccccch-heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCcee
Confidence 444443334333 467899999999984 655555566555554332100 011223579999999
Q ss_pred EEcCCCeeEEEeCCC
Q 027369 153 VFPIGMIHFQFNIGK 167 (224)
Q Consensus 153 v~P~G~~H~~~N~G~ 167 (224)
++|+|..|+-+..++
T Consensus 190 YiPp~~~H~gvae~d 204 (383)
T COG2850 190 YIPPGFPHYGVAEDD 204 (383)
T ss_pred ecCCCCCcCCccccc
Confidence 999999999766533
No 100
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=85.20 E-value=3.8 Score=35.54 Aligned_cols=69 Identities=20% Similarity=0.177 Sum_probs=51.7
Q ss_pred ccceEEEEEEEcCCCcCCc-eeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCc
Q 027369 92 TLGVSAARIDFAPYGQNPP-HTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTN 169 (224)
Q Consensus 92 ~lgis~~rv~l~pgg~~pp-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~ 169 (224)
...+.+..+.++||+.+|- -+|- -+-=+||+||+....+.. + ...+++||.+..-+-.+.+-+..|...
T Consensus 179 r~Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrLn~-d-------wv~V~aGD~mwm~A~cpQacyagG~g~ 248 (264)
T COG3257 179 RFDMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRLNN-N-------WVPVEAGDYIWMGAYCPQACYAGGRGA 248 (264)
T ss_pred CcceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEeecC-c-------eEEeecccEEEeeccChhhhccCCCCc
Confidence 3468889999999998754 3443 244589999999988742 1 478999999998887777776666653
No 101
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=82.69 E-value=11 Score=29.27 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=30.7
Q ss_pred EEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 027369 118 EILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 118 Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~ 167 (224)
-+.+.++|...+... ++ ...+.+||+++++.+.++.....+.
T Consensus 57 ~l~~~~~G~~~~~~~------g~--~~~~~pg~~~l~d~~~~~~~~~~~~ 98 (172)
T PF14525_consen 57 LLVLPLSGSARIEQG------GR--EVELAPGDVVLLDPGQPYRLEFSAG 98 (172)
T ss_pred EEEEEccCCEEEEEC------CE--EEEEcCCeEEEEcCCCCEEEEECCC
Confidence 345566777776642 22 5899999999999999988765533
No 102
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=81.51 E-value=6.9 Score=31.89 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=36.8
Q ss_pred EEEEcCCCcCCceeCC-CCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEE
Q 027369 99 RIDFAPYGQNPPHTHP-RATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 99 rv~l~pgg~~ppH~Hp-~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~ 154 (224)
...+++|..+-.---+ ....+.+|++|.+.+...++++ .+.....+.+||++=.
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G--~e~~l~~~~~Gd~~G~ 62 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEG--NALTLRYVRPGEYFGE 62 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCC--CEEEEEEecCCCeech
Confidence 4567777654322121 2468999999999999887763 4455567799998854
No 103
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=80.76 E-value=9.1 Score=27.02 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=37.6
Q ss_pred EEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEc
Q 027369 98 ARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFP 155 (224)
Q Consensus 98 ~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P 155 (224)
....+.+|..+- +.....+.+.+|++|.+.+...+.++ +......+.+||.+-..
T Consensus 18 ~~~~~~~g~~l~-~~g~~~~~~y~v~~G~v~~~~~~~~g--~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 18 EPVRYPAGEVII-RQGDVGDSFYIILSGEVRVYKVLEDG--REQILGILGPGDFFGEL 72 (120)
T ss_pred eEEEeCCCCEEE-eCCCcCCcEEEEEeeEEEEEEECCCC--ceEEEEeecCCceechh
Confidence 345677777642 23333678999999999998765442 45556788999987443
No 104
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=79.50 E-value=7.9 Score=27.25 Aligned_cols=53 Identities=23% Similarity=0.289 Sum_probs=35.9
Q ss_pred EEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEE
Q 027369 98 ARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFV 153 (224)
Q Consensus 98 ~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v 153 (224)
....+++|..+-..--+ .+.+.+|++|.+.+...++++ .......+.+|+++-
T Consensus 18 ~~~~~~~g~~l~~~~~~-~~~~~~i~~G~v~~~~~~~~g--~~~~~~~~~~g~~~g 70 (115)
T cd00038 18 EERRFPAGEVIIRQGDP-ADSLYIVLSGSVEVYKLDEDG--REQIVGFLGPGDLFG 70 (115)
T ss_pred eeeeeCCCCEEEcCCCC-CCeEEEEEeCEEEEEEECCCC--cEEEEEecCCccCcC
Confidence 44567888765222222 478999999999998776542 345567788998873
No 105
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.40 E-value=7.2 Score=28.76 Aligned_cols=41 Identities=29% Similarity=0.268 Sum_probs=33.3
Q ss_pred CCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeE
Q 027369 115 RATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHF 161 (224)
Q Consensus 115 ~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~ 161 (224)
.+.|++.|+.|.+.+.+.++. ..++..+|+.|.+|...-..
T Consensus 40 a~~E~Mtvv~Gal~v~lpgs~------dWq~~~~Ge~F~VpgnS~F~ 80 (94)
T COG3123 40 AAPEEMTVVSGALTVLLPGSD------DWQVYTAGEVFNVPGNSEFD 80 (94)
T ss_pred CCceEEEEEeeEEEEEcCCCc------ccEEecCCceEEcCCCCeEE
Confidence 367999999999999886553 25889999999999876443
No 106
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=75.37 E-value=9.7 Score=32.00 Aligned_cols=53 Identities=6% Similarity=-0.041 Sum_probs=37.0
Q ss_pred EEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEE
Q 027369 99 RIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 99 rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~ 154 (224)
...+++|..+-.. ......+.+|++|.+.+...+.+| .......+.+||++-.
T Consensus 33 ~~~~~kge~l~~~-G~~~~~~y~V~~G~v~v~~~~~~G--~e~~~~~~~~g~~~G~ 85 (226)
T PRK10402 33 LFHFLAREYIVQE-GQQPSYLFYLTRGRAKLYATLANG--KVSLIDFFAAPCFIGE 85 (226)
T ss_pred heeeCCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCC--CEeeeeecCCCCeEEe
Confidence 3457777754322 222578999999999999887763 4444567899998854
No 107
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=72.01 E-value=25 Score=32.02 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=40.6
Q ss_pred ceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEE
Q 027369 94 GVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQ 162 (224)
Q Consensus 94 gis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~ 162 (224)
..++.++++..-.-. . +.+...+++|++|++++...+ + +..|++|+.+++|....-+.
T Consensus 241 ~F~l~~~~i~~~~~~-~--~~~~~~il~v~eG~~~l~~~~------~--~~~l~~G~s~~ipa~~~~~~ 298 (312)
T COG1482 241 DFALYKWDISGTAEF-I--KQESFSILLVLEGEGTLIGGG------Q--TLKLKKGESFFIPANDGPYT 298 (312)
T ss_pred ceEEEEEeccChhhh-c--cCCCcEEEEEEcCeEEEecCC------E--EEEEcCCcEEEEEcCCCcEE
Confidence 456777777641111 1 123689999999999987431 2 58999999999999865554
No 108
>PLN02868 acyl-CoA thioesterase family protein
Probab=71.25 E-value=15 Score=34.21 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=37.9
Q ss_pred EEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEE
Q 027369 98 ARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 98 ~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~ 154 (224)
....+++|.++-.--. ....+.+|++|++.+...+.+ ++.....+++||+|-.
T Consensus 32 ~~~~~~~Ge~I~~~Gd-~~~~lyiI~~G~V~v~~~~~~---ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVREGE-PGDGLYFIWKGEAEVSGPAEE---ESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeCCC-cCceEEEEEeCEEEEEEECCC---CcEEEEEeCCCCEeeh
Confidence 3456788876533323 367899999999999876655 3445577899998874
No 109
>PHA02984 hypothetical protein; Provisional
Probab=69.59 E-value=30 Score=30.80 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=36.2
Q ss_pred cEEEE--EEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeC
Q 027369 117 TEILV--VLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNI 165 (224)
Q Consensus 117 ~Ei~y--Vl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~ 165 (224)
.|.+| +++|+..+..... ++..+..+++||.|.+.-+.-|.....
T Consensus 92 nEy~FvlCl~G~~~I~~~~~----~~~is~~I~kGeaf~md~~t~h~i~T~ 138 (286)
T PHA02984 92 NEYMFVLCLNGKTSIECFNK----GSKITNTIKKGEAFTLNLKTKYVTTTK 138 (286)
T ss_pred ccEEEEEEcCCeEEEEEecC----CceeeeEEecCceEEEEccceEEEEeC
Confidence 45555 6799999987654 566789999999999999999998644
No 110
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=69.29 E-value=6.2 Score=29.55 Aligned_cols=9 Identities=33% Similarity=0.298 Sum_probs=5.3
Q ss_pred CchhhHHHH
Q 027369 1 MKGVQLLLG 9 (224)
Q Consensus 1 m~~~~~~~~ 9 (224)
|++..|++|
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 886654443
No 111
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=67.12 E-value=22 Score=30.68 Aligned_cols=91 Identities=20% Similarity=0.265 Sum_probs=55.1
Q ss_pred CCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEcC-CCCce
Q 027369 105 YGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGFGS-QNPGV 183 (224)
Q Consensus 105 gg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s-~~pg~ 183 (224)
.|....|| ++-..+|++|+.+.... ++....+.+|||..+.|+|......-... ..++ -+.- --|..
T Consensus 111 eGhsGrh~---ad~y~tIL~G~~~~~~~------g~~~~evy~pGd~~~l~rg~a~~y~m~~~--tw~L-EY~RG~IP~~ 178 (216)
T PF04622_consen 111 EGHSGRHW---ADDYFTILSGEQWAWSP------GSLEPEVYKPGDSHHLPRGEAKQYQMPPG--TWAL-EYGRGWIPSM 178 (216)
T ss_pred CCCCcceE---eeeEEEEEEEEEEEEcC------CCCCceEeccCCEEEecCceEEEEEeCCC--eEEE-EecCCchhhh
Confidence 44556665 57789999999987642 23335788999999999999886654322 2222 2211 12221
Q ss_pred --eeechhhhcCCCCCCHHHHHHhcCCCH
Q 027369 184 --ITIANTVFGADPPINPDFLGKAFQLDP 210 (224)
Q Consensus 184 --~~i~~~lf~~~p~~~~~vLa~af~~~~ 210 (224)
+.+++++|.+ ++-..+-++..+..
T Consensus 179 lpf~~~dt~~sT---lDf~t~~~T~~~~~ 204 (216)
T PF04622_consen 179 LPFGFADTLFST---LDFPTLYRTVYITA 204 (216)
T ss_pred hHHHHHHHHHhc---cchHHHHHHHHHHH
Confidence 2334566664 66666666655544
No 112
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=66.79 E-value=41 Score=23.50 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=36.9
Q ss_pred EEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEcC
Q 027369 122 VLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGFGS 178 (224)
Q Consensus 122 Vl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s 178 (224)
-..|..++.+.+.++ ..++...+++||..-++.+. -+....|+..++-+ .++.
T Consensus 4 ~a~~~sWv~V~d~dG--~~~~~~~l~~G~~~~~~~~~-~~~i~iGna~~v~v-~~nG 56 (77)
T PF13464_consen 4 TATGDSWVEVTDADG--KVLFSGTLKAGETKTFEGKE-PFRIRIGNAGAVEV-TVNG 56 (77)
T ss_pred EEeCCeEEEEEeCCC--cEeeeeeeCCCcEEEEeCCC-CEEEEEeCCCcEEE-EECC
Confidence 345888888886653 68889999999999984443 34456777666654 4443
No 113
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=64.81 E-value=26 Score=27.97 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=39.4
Q ss_pred EEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcC
Q 027369 97 AARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPI 156 (224)
Q Consensus 97 ~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~ 156 (224)
.....+++|...-..--+ +.-+.+|++|.+.+....+++ .......+.+||+|-...
T Consensus 23 ~~~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~G--~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 23 LEVRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTEDG--REIILGFLGPGDFFGELA 79 (214)
T ss_pred ceeEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCCC--cEEEEEEecCCchhhhHH
Confidence 344567777554443343 456888999999999988763 444556789999986664
No 114
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=63.59 E-value=3.9 Score=36.51 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=18.0
Q ss_pred EEEEecCCCEEEEcCCCeeE
Q 027369 142 IAKVLNKGDVFVFPIGMIHF 161 (224)
Q Consensus 142 ~~~~L~~GDv~v~P~G~~H~ 161 (224)
....+++||++++|+|.+|.
T Consensus 151 n~v~v~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 151 NRIKLKPGDFFYVPSGTPHA 170 (302)
T ss_pred cccccCCCCEEEeCCCCccc
Confidence 34689999999999999997
No 115
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=63.40 E-value=12 Score=34.16 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=31.6
Q ss_pred CeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEcCCCCcee
Q 027369 139 NTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGFGSQNPGVI 184 (224)
Q Consensus 139 ~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~pg~~ 184 (224)
.+-+.-..++|+++++|.|..|-+.|...+-|+.--.-+..|.+.+
T Consensus 260 ~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~V 305 (407)
T KOG2130|consen 260 YKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFV 305 (407)
T ss_pred cCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCcee
Confidence 3445567899999999999999999976554443322344555544
No 116
>PHA02890 hypothetical protein; Provisional
Probab=63.09 E-value=46 Score=29.48 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=36.2
Q ss_pred cEEEE--EEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEe
Q 027369 117 TEILV--VLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN 164 (224)
Q Consensus 117 ~Ei~y--Vl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N 164 (224)
.|.+| +++|+..+..... ++..+..+++||.|.+.-+.-|....
T Consensus 91 nEy~FVlCL~Gs~~In~~~~----d~~iS~~I~kGeaF~mdv~t~H~i~T 136 (278)
T PHA02890 91 IECFFVACIEGSCKINVNIG----DREISDHIHENQGFIMDVGLDHAIDS 136 (278)
T ss_pred ccEEEEEEeCCeEEEEEecC----CceeeeeeecCceEEEEccceEEEEc
Confidence 46555 6799999987654 56678999999999999999999865
No 117
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=62.15 E-value=97 Score=28.29 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=46.9
Q ss_pred CCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEEEEcC
Q 027369 108 NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFAGFGS 178 (224)
Q Consensus 108 ~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s 178 (224)
...-++.+++-+++--+|.+.+.- +- +| ..+.++++.+||+|+-..+.-.|.....++-++..
T Consensus 147 ~safyNsDGDFLiVPQ~G~L~I~T--Ef---Gr---llV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg~ 209 (446)
T KOG1417|consen 147 NSAFYNSDGDFLIVPQQGRLWITT--EF---GR---LLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYGA 209 (446)
T ss_pred cceeecCCCCEEEecccCcEEEEe--ec---cc---eeecccceEEeecccEEEEecCCCCcceEEEEecc
Confidence 455667777777777788888763 22 33 67899999999999998887777777777766654
No 118
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=62.07 E-value=53 Score=29.36 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=35.3
Q ss_pred CcEE-EEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEe--CCCCcEEEE
Q 027369 116 ATEI-LVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN--IGKTNAVAF 173 (224)
Q Consensus 116 a~Ei-~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N--~G~~~a~~i 173 (224)
..|+ ++.+.|++.+.+.+ + ++.|.+.|.+++|+|.--.... ....|+.+.
T Consensus 73 rrE~giV~lgG~~~V~vdG------~--~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~ 125 (276)
T PRK00924 73 RRELGIINIGGAGTVTVDG------E--TYELGHRDALYVGKGAKEVVFASADAANPAKFY 125 (276)
T ss_pred CcEEEEEEccceEEEEECC------E--EEecCCCcEEEECCCCcEEEEEecCCCCCcEEE
Confidence 4565 55778999998632 2 4669999999999998766553 234566654
No 119
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=60.10 E-value=32 Score=30.74 Aligned_cols=46 Identities=2% Similarity=-0.055 Sum_probs=36.5
Q ss_pred cEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCc
Q 027369 117 TEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTN 169 (224)
Q Consensus 117 ~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~ 169 (224)
.-++++.+|.+.+.-.+. . ...+.++.++++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~~~g-----~--~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITTSSG-----E--YITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEeCCC-----c--eEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 478999999999864322 1 368999999999999999998876443
No 120
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=59.38 E-value=37 Score=28.34 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=35.1
Q ss_pred EEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEE
Q 027369 100 IDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 100 v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~ 154 (224)
..+++|..+-.--- ....+.+|++|.+.+...++++ +......+.+||++-.
T Consensus 40 ~~~~kge~l~~~Gd-~~~~ly~v~~G~v~~~~~~~~G--~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 40 KPIQKGQTLFKAGD-ELKSLYAIRSGTIKSYTITEQG--DEQITGFHLAGDLVGF 91 (235)
T ss_pred eeecCCCEeECCCC-CcceEEEEeeceEEEEEECCCC--CEEEEEeccCCceecc
Confidence 35777765432222 2568899999999998877663 4444455689999854
No 121
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=57.78 E-value=27 Score=27.99 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=27.7
Q ss_pred CcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEE
Q 027369 116 ATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFV 153 (224)
Q Consensus 116 a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v 153 (224)
.+.+.+|++|.+.+...++++ .......+.+||++-
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G--~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESG--EEITVALLRENSVFG 46 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCC--cEeeeEEccCCCEee
Confidence 467889999999998877663 444457789999874
No 122
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=55.87 E-value=49 Score=29.18 Aligned_cols=78 Identities=17% Similarity=0.075 Sum_probs=45.7
Q ss_pred EEEecccCcCcccccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCC--------C
Q 027369 79 VTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKG--------D 150 (224)
Q Consensus 79 v~~~~~~~~P~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~G--------D 150 (224)
++.++.+.. +..- +.+..+.+++|.....-.. +-+-.++.++|++++.+.+. . ...+..- |
T Consensus 14 ~~~i~~~~~-g~~~--~~~~~l~L~~g~~~~~~~~-~~E~~vv~l~G~~~v~~~g~-----~--~~~l~~R~~vF~~~~d 82 (261)
T PF04962_consen 14 VYSITPENA-GWMY--MGFGVLRLEAGESLEFELE-RRELGVVNLGGKATVTVDGE-----E--FYELGGRESVFDGPPD 82 (261)
T ss_dssp EEECTCCCC-CCCC--BECCCEEEECCHCCCCCCC-SEEEEEEEESSSEEEEETTE-----E--EEEE-TTSSGGGS--E
T ss_pred EEEECCCcc-Cccc--cceEEEEecCCCEEeccCC-CcEEEEEEeCCEEEEEeCCc-----e--EEEecccccccCCCCc
Confidence 444444443 3332 3445678888886654433 23444557899999987321 1 3556665 9
Q ss_pred EEEEcCCCeeEEEeCCC
Q 027369 151 VFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 151 v~v~P~G~~H~~~N~G~ 167 (224)
++++|+|.---+...++
T Consensus 83 ~lYvp~g~~~~i~a~~~ 99 (261)
T PF04962_consen 83 ALYVPRGTKVVIFASTD 99 (261)
T ss_dssp EEEE-TT--EEEEESST
T ss_pred EEEeCCCCeEEEEEcCC
Confidence 99999999877777544
No 123
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=55.70 E-value=10 Score=34.47 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=18.3
Q ss_pred EEEecCCCEEEEcCCCeeEE
Q 027369 143 AKVLNKGDVFVFPIGMIHFQ 162 (224)
Q Consensus 143 ~~~L~~GDv~v~P~G~~H~~ 162 (224)
...|+|||.+++|+|.+|..
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~ 178 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAY 178 (312)
T ss_pred EEecCCCCEEEecCCCceee
Confidence 47899999999999999976
No 124
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=55.49 E-value=13 Score=34.80 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=20.7
Q ss_pred eEEEEecCCCEEEEcCCCeeEEEeCCC
Q 027369 141 LIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 141 ~~~~~L~~GDv~v~P~G~~H~~~N~G~ 167 (224)
+....|+|||.+++|.|.+|.. -.|+
T Consensus 236 LN~v~l~pGeaifipAg~~HAy-l~G~ 261 (389)
T PRK15131 236 LNVVKLNPGEAMFLFAETPHAY-LQGV 261 (389)
T ss_pred eeEEEeCCCCEEEeCCCCCeEE-cCCe
Confidence 3457899999999999999975 3344
No 125
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=54.64 E-value=48 Score=26.32 Aligned_cols=66 Identities=14% Similarity=0.213 Sum_probs=45.4
Q ss_pred cCcccccceEEEEEEEcCCCcCCceeCCCCcEEEEEE----ecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEE
Q 027369 87 IPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVL----EGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQ 162 (224)
Q Consensus 87 ~P~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl----~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~ 162 (224)
-|+++ ++.+.++.+++|...--- +..|+..++ .|.+.+++-++. + ..++|||++.+-.|..-.+
T Consensus 11 ~P~~k--N~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~---~----~~~~PGDIirLt~Gy~Si~ 78 (134)
T KOG3416|consen 11 KPGLK--NINVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEE---G----CLIQPGDIIRLTGGYASIF 78 (134)
T ss_pred Chhhh--cceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCc---C----cccCCccEEEecccchhhh
Confidence 36666 456677777777654322 345776665 567777776643 2 5689999999999988776
Q ss_pred Ee
Q 027369 163 FN 164 (224)
Q Consensus 163 ~N 164 (224)
++
T Consensus 79 qg 80 (134)
T KOG3416|consen 79 QG 80 (134)
T ss_pred cC
Confidence 55
No 126
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=52.68 E-value=1.2e+02 Score=24.88 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=43.3
Q ss_pred CceeCCCCcEEEEEEecEEEEEEEecCCC--CCeeEEEEecCCCEEEEcCCCeeEEE
Q 027369 109 PPHTHPRATEILVVLEGTLYVGFVTSNQL--NNTLIAKVLNKGDVFVFPIGMIHFQF 163 (224)
Q Consensus 109 ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~--~~~~~~~~L~~GDv~v~P~G~~H~~~ 163 (224)
..-.||.++|.++-+.|+-.+-++.+.+. -.++..+..++|+.+.+-+|.+|...
T Consensus 72 ~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl 128 (162)
T PRK03606 72 MLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPL 128 (162)
T ss_pred eEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccc
Confidence 44568889999999999988877765421 13566789999999999999999753
No 127
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=50.31 E-value=47 Score=27.74 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=35.4
Q ss_pred EEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEE
Q 027369 99 RIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 99 rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~ 154 (224)
...+++|..+- +-....+.+.+|++|.+.+.....+ +......+.+||++-.
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~---~~~~i~~~~~g~~~g~ 83 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQD---RETTLAILRPVSTFIL 83 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCC---ceEEEEEeCCCchhhh
Confidence 45677777543 2333467899999999999865432 4444567899998643
No 128
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=49.85 E-value=1e+02 Score=25.05 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=38.4
Q ss_pred CceeCCCCcEEEEEEecEE-EEEEEecCCC---CCeeEEEEecCCCEEEEcCCCeeEE-EeCCCCcEEEEEE
Q 027369 109 PPHTHPRATEILVVLEGTL-YVGFVTSNQL---NNTLIAKVLNKGDVFVFPIGMIHFQ-FNIGKTNAVAFAG 175 (224)
Q Consensus 109 ppH~Hp~a~Ei~yVl~G~~-~v~~~~~~~~---~~~~~~~~L~~GDv~v~P~G~~H~~-~N~G~~~a~~i~~ 175 (224)
..=.||.++|.++-+.|+. ++-++.+..+ -+++..+.+.+|+.+.+-+|.+|.. .-.+ +++.++..
T Consensus 73 ~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~-~~~~f~vv 143 (165)
T PF04115_consen 73 MLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLD-EPADFLVV 143 (165)
T ss_dssp EEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESS-SEEEEEEE
T ss_pred eeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccC-CcceEEEE
Confidence 3345788999999999988 5555544311 1456778999999999999999984 3343 45555544
No 129
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=48.75 E-value=69 Score=26.12 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=43.6
Q ss_pred cCCceeCCCCcEEEEEEecEEEEEEEecCCC-----------------CCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 027369 107 QNPPHTHPRATEILVVLEGTLYVGFVTSNQL-----------------NNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 107 ~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-----------------~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~ 167 (224)
..-+=+|.+--.+-++++|+=.+++....+. ......-+|++|+..+|=+|-+|...-.+.
T Consensus 60 ~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~~~ 137 (154)
T COG2731 60 EKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCNVG 137 (154)
T ss_pred hcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccccC
Confidence 3455567778999999999988887654310 111235689999999999999998654444
No 130
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=45.81 E-value=75 Score=25.45 Aligned_cols=55 Identities=13% Similarity=0.092 Sum_probs=39.5
Q ss_pred CceeCCCCcEEEEEEecEEEEEEEecCC---------C------CCeeEEEEecCCCEEEEcCCCeeEEE
Q 027369 109 PPHTHPRATEILVVLEGTLYVGFVTSNQ---------L------NNTLIAKVLNKGDVFVFPIGMIHFQF 163 (224)
Q Consensus 109 ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~---------~------~~~~~~~~L~~GDv~v~P~G~~H~~~ 163 (224)
.+=.|.+--.+-|+++|+=.+++..... + .+......|++|+..+|.++-.|...
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 3455777889999999998888754321 0 01112568999999999999999764
No 131
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=45.78 E-value=59 Score=23.23 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=36.9
Q ss_pred EEEcCCCcCCceeCC---CCcEEEEE--Ee-c-----EEEEEEEecCCCCCeeEEEE-----ecCCCEEEEcC-CCeeEE
Q 027369 100 IDFAPYGQNPPHTHP---RATEILVV--LE-G-----TLYVGFVTSNQLNNTLIAKV-----LNKGDVFVFPI-GMIHFQ 162 (224)
Q Consensus 100 v~l~pgg~~ppH~Hp---~a~Ei~yV--l~-G-----~~~v~~~~~~~~~~~~~~~~-----L~~GDv~v~P~-G~~H~~ 162 (224)
..+.+|+...||+.. ....+.++ +. - -+...+......+....... .++|++++|+. ...|..
T Consensus 4 ~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v 83 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGV 83 (100)
T ss_dssp EEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEE
T ss_pred EEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecC
Confidence 346899999999976 33444444 33 1 12333332100001111222 88999999999 999997
Q ss_pred EeC
Q 027369 163 FNI 165 (224)
Q Consensus 163 ~N~ 165 (224)
.-.
T Consensus 84 ~~v 86 (100)
T PF13640_consen 84 TPV 86 (100)
T ss_dssp EEE
T ss_pred ccc
Confidence 665
No 132
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=44.88 E-value=1.9e+02 Score=25.51 Aligned_cols=85 Identities=19% Similarity=0.136 Sum_probs=53.2
Q ss_pred EEEecccCcCcccccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecC-C-CCCeeEEEEecCCCEEEEcC
Q 027369 79 VTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN-Q-LNNTLIAKVLNKGDVFVFPI 156 (224)
Q Consensus 79 v~~~~~~~~P~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~-~-~~~~~~~~~L~~GDv~v~P~ 156 (224)
+..++.. -+++.- +.+..++|++|.....-.-.+ +-++++++|++.+...+.. + -+.|.-.++=++=|.+++|.
T Consensus 16 v~~vtp~-sagw~Y--VGF~~~~L~~Ges~~~~~~~~-E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~ 91 (270)
T COG3718 16 VQDVTPE-SAGWEY--VGFRLLRLAAGESATEETGDR-ERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPA 91 (270)
T ss_pred eEEecCC-CCCcee--EEEEEEEccCCCcccccCCCc-eEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecC
Confidence 4444433 234443 344556689999877666553 5666788999999765432 0 01232224445779999999
Q ss_pred CCeeEEEeCCC
Q 027369 157 GMIHFQFNIGK 167 (224)
Q Consensus 157 G~~H~~~N~G~ 167 (224)
|..-.+...++
T Consensus 92 g~~~~vtA~t~ 102 (270)
T COG3718 92 GSAFSVTATTD 102 (270)
T ss_pred CceEEEEeecc
Confidence 99888766554
No 133
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.52 E-value=10 Score=32.70 Aligned_cols=43 Identities=26% Similarity=0.241 Sum_probs=35.4
Q ss_pred cccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEe
Q 027369 91 NTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVT 133 (224)
Q Consensus 91 ~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~ 133 (224)
.+-+.|+....+.|++++|.|-||.-+-+.-++=|++.+.-.+
T Consensus 71 EcD~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyD 113 (236)
T KOG4281|consen 71 ECDRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYD 113 (236)
T ss_pred ecCceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeecc
Confidence 3447889999999999999999998777777888998886543
No 134
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=44.04 E-value=25 Score=32.75 Aligned_cols=72 Identities=22% Similarity=0.243 Sum_probs=47.6
Q ss_pred eEEEEEE-EcC-CCcCCce---eCCCCcEEEEEEecEEEEEEEecCCC----------------------CCeeEEEEec
Q 027369 95 VSAARID-FAP-YGQNPPH---THPRATEILVVLEGTLYVGFVTSNQL----------------------NNTLIAKVLN 147 (224)
Q Consensus 95 is~~rv~-l~p-gg~~ppH---~Hp~a~Ei~yVl~G~~~v~~~~~~~~----------------------~~~~~~~~L~ 147 (224)
..-.|.. ..| |.-.|.| +|. .-+-..+-|+=+.-+..+..+ ..+..+-.=+
T Consensus 196 ~ddyrFvy~Gp~gSwtp~HaDVf~s--~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qe 273 (427)
T KOG2131|consen 196 SDDYRFVYAGPAGSWTPFHADVFHS--PSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQE 273 (427)
T ss_pred CCceeEEEeccCCCCCccchhhhcC--CcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhcc
Confidence 3344444 343 4457888 774 567777888777766655310 0112223348
Q ss_pred CCCEEEEcCCCeeEEEeCCCC
Q 027369 148 KGDVFVFPIGMIHFQFNIGKT 168 (224)
Q Consensus 148 ~GDv~v~P~G~~H~~~N~G~~ 168 (224)
+|+++++|.|.-|...|.|++
T Consensus 274 pge~VFvPsGW~hQV~NL~dT 294 (427)
T KOG2131|consen 274 PGETVFVPSGWHHQVLNLGDT 294 (427)
T ss_pred CCceeeccCccccccccccce
Confidence 999999999999999999986
No 135
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=42.05 E-value=29 Score=27.79 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=22.8
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHhhh
Q 027369 195 PPINPDFLGKAFQLDPQVVKDLQNK 219 (224)
Q Consensus 195 p~~~~~vLa~af~~~~~~v~~l~~~ 219 (224)
|.++++-+|++|+++++.+++|++.
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcC
Confidence 4699999999999999999999875
No 136
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=41.29 E-value=1.2e+02 Score=24.06 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=38.5
Q ss_pred cEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEe---CCCCcEEEEEE
Q 027369 117 TEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN---IGKTNAVAFAG 175 (224)
Q Consensus 117 ~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N---~G~~~a~~i~~ 175 (224)
.-+.+|++|+=++.+.+. .+.+.+|+.++.+..++-...- .-++|-..+..
T Consensus 24 p~i~~vlQG~K~~~~g~~--------~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l 77 (155)
T PF06719_consen 24 PSICIVLQGSKRVHLGDQ--------VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSL 77 (155)
T ss_pred CeEEEEEeeeEEEEECCc--------eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEE
Confidence 578999999999887532 4889999999999998766433 34567665543
No 137
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=41.15 E-value=83 Score=24.79 Aligned_cols=54 Identities=22% Similarity=0.199 Sum_probs=34.0
Q ss_pred CCceeCCCCcEEEEEEecEEEEEEEecCC----------C--------CCeeEEEEecCCCEEEEcCCCeeE
Q 027369 108 NPPHTHPRATEILVVLEGTLYVGFVTSNQ----------L--------NNTLIAKVLNKGDVFVFPIGMIHF 161 (224)
Q Consensus 108 ~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~----------~--------~~~~~~~~L~~GDv~v~P~G~~H~ 161 (224)
..+=.|.+---+-|+++|+=++++..... . +.......|++|+..+|-++-+|.
T Consensus 61 ~~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~~y~~~~D~~f~~~~~~~~~i~l~~G~faiffP~D~H~ 132 (142)
T TIGR00022 61 KKAELHHRYLDIQLLLRGEENIEVGTTPPNLSVYEDYLEEDDIQLCADIDDEQTVILKPGMFAVFYPGEPHK 132 (142)
T ss_pred cchhhhhheEEEEEeecceEEEEEecCccccccccCCCcCCCEEeccCCCCceEEEeCCCcEEEECCCCccc
Confidence 34456777789999999998888853210 0 011223456677777777776664
No 138
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=40.92 E-value=59 Score=33.09 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=34.2
Q ss_pred EEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEE
Q 027369 97 AARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 97 ~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~ 152 (224)
+....+.||..+-.--.+ ++++.+|++|++.+... .++ +......+++||+|
T Consensus 397 ~~~~~~~pge~I~~qge~-~~~lY~I~~G~V~i~~~-~~~--~e~~l~~l~~Gd~F 448 (823)
T PLN03192 397 MKAEYIPPREDVIMQNEA-PDDVYIVVSGEVEIIDS-EGE--KERVVGTLGCGDIF 448 (823)
T ss_pred hheeeeCCCCEEEECCCC-CceEEEEEecEEEEEEe-cCC--cceeeEEccCCCEe
Confidence 344568888754332222 57899999999998542 221 34445689999987
No 139
>PF13994 PgaD: PgaD-like protein
Probab=40.39 E-value=33 Score=27.05 Aligned_cols=24 Identities=25% Similarity=0.643 Sum_probs=21.9
Q ss_pred CCCHHHHHHhcCCCHHHHHHHhhh
Q 027369 196 PINPDFLGKAFQLDPQVVKDLQNK 219 (224)
Q Consensus 196 ~~~~~vLa~af~~~~~~v~~l~~~ 219 (224)
+++++-+|+.|++++++++++++.
T Consensus 100 ~~~~~elA~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 100 PVSDEELARSFGLSPEQLQQLRQA 123 (138)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHhC
Confidence 389999999999999999999875
No 140
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=39.82 E-value=1.1e+02 Score=28.38 Aligned_cols=85 Identities=19% Similarity=0.193 Sum_probs=62.1
Q ss_pred CCCeEEEEecccCcCcccccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEE-
Q 027369 74 RLGFKVTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF- 152 (224)
Q Consensus 74 ~~g~~v~~~~~~~~P~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~- 152 (224)
..|..|..++.+- ++.-+.+.|++++..-++.-+..-+...+-.++|.--++.++.+++ ..+-...|++||-+
T Consensus 250 ~sG~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG--~~vsVt~Lk~GD~VL 323 (344)
T PRK02290 250 RSGDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDG--KPVSVVDLKPGDEVL 323 (344)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCC--CEeeeeecCCCCEEE
Confidence 4566677665432 2335778999999988876666667889999999999999998873 33445789999976
Q ss_pred -EEcCCCeeEEEe
Q 027369 153 -VFPIGMIHFQFN 164 (224)
Q Consensus 153 -v~P~G~~H~~~N 164 (224)
+.+.+--||-.-
T Consensus 324 ~~~~~~~RHfG~~ 336 (344)
T PRK02290 324 GYLEEAARHFGMA 336 (344)
T ss_pred EEecCCcccccce
Confidence 456666776443
No 141
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=39.34 E-value=35 Score=27.84 Aligned_cols=25 Identities=28% Similarity=0.654 Sum_probs=22.8
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHhhh
Q 027369 195 PPINPDFLGKAFQLDPQVVKDLQNK 219 (224)
Q Consensus 195 p~~~~~vLa~af~~~~~~v~~l~~~ 219 (224)
|.++++-+|+.|+++++.++++++.
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHhC
Confidence 4689999999999999999999875
No 142
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=37.04 E-value=33 Score=26.72 Aligned_cols=26 Identities=8% Similarity=0.238 Sum_probs=20.9
Q ss_pred CCCHHHHHHhcCCCHHHHHHHhhhcc
Q 027369 196 PINPDFLGKAFQLDPQVVKDLQNKFM 221 (224)
Q Consensus 196 ~~~~~vLa~af~~~~~~v~~l~~~~~ 221 (224)
|+++..+|+..++++++|+++++..+
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~~ 97 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEHG 97 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHHT
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHcC
Confidence 59999999999999999999998754
No 143
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=36.38 E-value=1.7e+02 Score=23.20 Aligned_cols=56 Identities=21% Similarity=0.182 Sum_probs=33.4
Q ss_pred CCceeCCCCcEEEEEEecEEEEEEE-ecCC-----------------CCCeeEEEEecCCCEEEEcCCCeeEEE
Q 027369 108 NPPHTHPRATEILVVLEGTLYVGFV-TSNQ-----------------LNNTLIAKVLNKGDVFVFPIGMIHFQF 163 (224)
Q Consensus 108 ~ppH~Hp~a~Ei~yVl~G~~~v~~~-~~~~-----------------~~~~~~~~~L~~GDv~v~P~G~~H~~~ 163 (224)
..+=.|.+--.+-|+++|+=++++. .... .+.......|++|+.++|-++-+|.-.
T Consensus 61 ~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~ 134 (153)
T PF04074_consen 61 RRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPG 134 (153)
T ss_dssp S-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEE
T ss_pred cceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCcccccc
Confidence 4556788888999999999888883 2210 011122357999999999999999843
No 144
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=36.05 E-value=1.6e+02 Score=25.99 Aligned_cols=85 Identities=19% Similarity=0.227 Sum_probs=49.4
Q ss_pred cccceEEEEEEEcCCCc---CCceeCCCCcEEEEEE---ecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEe
Q 027369 91 NTLGVSAARIDFAPYGQ---NPPHTHPRATEILVVL---EGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN 164 (224)
Q Consensus 91 ~~lgis~~rv~l~pgg~---~ppH~Hp~a~Ei~yVl---~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N 164 (224)
++-.+++....++||.+ .|.|.|.|..|..+-. +-.-.+.+..+- .......++--+.++-|+=.+|.-
T Consensus 173 ~scQL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP---~ETRHiv~~NEqAViSP~WSIHSG-- 247 (278)
T COG3717 173 ESCQLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQP---QETRHIVMHNEQAVISPPWSIHSG-- 247 (278)
T ss_pred hhhhhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCC---CceeEEEEeccceeeCCCceeecC--
Confidence 33346677778999996 5999999987765422 111222222221 111233455666677777778863
Q ss_pred CCCCcEEEEEEEcCCC
Q 027369 165 IGKTNAVAFAGFGSQN 180 (224)
Q Consensus 165 ~G~~~a~~i~~~~s~~ 180 (224)
.|...-.+|++-.-+|
T Consensus 248 ~GT~~YtFIWaMaGeN 263 (278)
T COG3717 248 VGTANYTFIWAMAGEN 263 (278)
T ss_pred ccccceEEEEEecccc
Confidence 4555556676665444
No 145
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=35.18 E-value=37 Score=23.01 Aligned_cols=24 Identities=13% Similarity=0.361 Sum_probs=17.9
Q ss_pred CCHHHHHHhcCCCHHHHHHHhhhc
Q 027369 197 INPDFLGKAFQLDPQVVKDLQNKF 220 (224)
Q Consensus 197 ~~~~vLa~af~~~~~~v~~l~~~~ 220 (224)
=.+.-|.+.++++++++++||+++
T Consensus 44 s~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 44 SVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp SHHHHHHHT-T--HHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHc
Confidence 367788899999999999999875
No 146
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=35.08 E-value=1.3e+02 Score=27.81 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=62.3
Q ss_pred CCCeEEEEecccCcCcccccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEE-
Q 027369 74 RLGFKVTTVNVEQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF- 152 (224)
Q Consensus 74 ~~g~~v~~~~~~~~P~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~- 152 (224)
..|..|..++.+- ++.-+.+.|++++..-++.-+...+..++-.++|..-++.++.+++ ..+-...|++||-+
T Consensus 260 ~sG~~VlvVd~~G----~tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G--~~vsVt~Lk~GD~vL 333 (354)
T PF01959_consen 260 RSGDEVLVVDADG----RTRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDG--EPVSVTELKPGDEVL 333 (354)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCC--CEeeeeecCCCCEEE
Confidence 4566666665331 2335778999999888876666657899999999999999998873 33445789999976
Q ss_pred -EEcCCCeeEEEeC
Q 027369 153 -VFPIGMIHFQFNI 165 (224)
Q Consensus 153 -v~P~G~~H~~~N~ 165 (224)
+++.+--|+-+-.
T Consensus 334 ~~~~~~~RHfG~~I 347 (354)
T PF01959_consen 334 VYLEEAGRHFGMKI 347 (354)
T ss_pred EEecCCCcccceEe
Confidence 5566777775443
No 147
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=34.88 E-value=40 Score=22.68 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=23.4
Q ss_pred EEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCC
Q 027369 128 YVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKT 168 (224)
Q Consensus 128 ~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~ 168 (224)
++++.|+. ++.++.+|++|..|.--+|.++.-.-.|..
T Consensus 11 rVQlTD~K---gr~~Ti~L~~G~~fhThrG~i~HDdlIG~~ 48 (54)
T PF14801_consen 11 RVQLTDPK---GRKHTITLEPGGEFHTHRGAIRHDDLIGRP 48 (54)
T ss_dssp EEEEEETT-----EEEEE--TT-EEEETTEEEEHHHHTT--
T ss_pred EEEEccCC---CCeeeEEECCCCeEEcCccccchhheecCC
Confidence 35666776 788899999999999988887764445543
No 148
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=34.70 E-value=65 Score=32.69 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=34.8
Q ss_pred EEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEE
Q 027369 100 IDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 100 v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~ 152 (224)
..+.||..+-..-.+ -+|+.+|++|.+.+.-.+.+ +-.....|++||.+
T Consensus 445 ~~f~pge~iireGd~-v~~myFI~rG~le~~~~~~g---~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 445 EYFTPGEYIIREGDP-VTDMYFIVRGSLESITTDGG---GFFVVAILGPGDFF 493 (727)
T ss_pred hccCCCCeEEecCCc-cceeEEEEeeeEEEEEccCC---ceEEEEEecCCCcc
Confidence 346677766666666 58999999999987533221 33456889999997
No 149
>COG1741 Pirin-related protein [General function prediction only]
Probab=34.60 E-value=3.3e+02 Score=24.23 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=31.3
Q ss_pred CcCcccccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEE
Q 027369 86 QIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVG 130 (224)
Q Consensus 86 ~~P~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~ 130 (224)
..|.-+.. +.+..+.+++|+..+.+ =..-.-++||++|++.+.
T Consensus 165 ~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~ 207 (276)
T COG1741 165 SSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVN 207 (276)
T ss_pred ccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEc
Confidence 45555555 77888889999987666 222357899999988873
No 150
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=32.98 E-value=76 Score=25.03 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=21.5
Q ss_pred eeEEEEecCCCEEEEcCCCeeEE-EeCCCCc
Q 027369 140 TLIAKVLNKGDVFVFPIGMIHFQ-FNIGKTN 169 (224)
Q Consensus 140 ~~~~~~L~~GDv~v~P~G~~H~~-~N~G~~~ 169 (224)
......+++||++++-.-++|.- .|.++.+
T Consensus 178 ~~~~~~~~~Gdvl~~~~~~~H~s~~N~s~~~ 208 (211)
T PF05721_consen 178 EWVPVPMKAGDVLFFHSRLIHGSGPNTSDDP 208 (211)
T ss_dssp GCEEE-BSTTEEEEEETTSEEEEE-B-SSST
T ss_pred ceEEeecCCCeEEEEcCCccccCCCCCCcCc
Confidence 34567799999999999999995 4555543
No 151
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=31.72 E-value=2.6e+02 Score=22.15 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=48.9
Q ss_pred eEEEEEEEcCCCcCCceeCCCCcEEEEEEec-EEEEEEEecCCCCCeeEEEEe----cCC--CEEEEcCCCeeEEEeCCC
Q 027369 95 VSAARIDFAPYGQNPPHTHPRATEILVVLEG-TLYVGFVTSNQLNNTLIAKVL----NKG--DVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 95 is~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G-~~~v~~~~~~~~~~~~~~~~L----~~G--Dv~v~P~G~~H~~~N~G~ 167 (224)
.+....-+.++.....|.= +++|+.+...| .+++.+..++ ++..+..| .+| =.+++|+|.....+..+.
T Consensus 41 ~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~d---g~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~ 116 (139)
T PF06172_consen 41 STSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPD---GSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPE 116 (139)
T ss_dssp -EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTT---STEEEEEESSTTCTTEBSEEEE-TTSEEEEEECES
T ss_pred ceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCC---CCeEEEEECCCCCCCceEEEEECCCEEEEccccCC
Confidence 3444455777666666654 68999999999 6888888886 45445555 345 367999999998865444
Q ss_pred CcEEEE
Q 027369 168 TNAVAF 173 (224)
Q Consensus 168 ~~a~~i 173 (224)
..-.++
T Consensus 117 ~~y~Lv 122 (139)
T PF06172_consen 117 GDYSLV 122 (139)
T ss_dssp SSEEEE
T ss_pred CCEEEE
Confidence 444444
No 152
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=30.84 E-value=67 Score=26.01 Aligned_cols=37 Identities=22% Similarity=0.539 Sum_probs=24.7
Q ss_pred CCCCcceeeecCCCCCcceecCcccCCCCCCCCCCeeee
Q 027369 25 PSPLQDICVAIDEPKNAVFVNGKFCKDPKLAKPEDFFFS 63 (224)
Q Consensus 25 ~~~~~dfcv~~~~~~~~~~~~g~~ck~p~~v~~~df~f~ 63 (224)
|.-..|||++.+.....+.+-|.--. .....+||+|.
T Consensus 105 PaG~YDy~I~~P~~~~kiwIaGd~g~--~~tr~dDy~fE 141 (161)
T PF10365_consen 105 PAGTYDYCIAAPQPGGKIWIAGDGGD--GPTRGDDYVFE 141 (161)
T ss_pred cCceeEEEEecCCCCCeEEEecCCCC--CCccccceEEe
Confidence 55678999995544456777775322 23357999996
No 153
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=29.85 E-value=51 Score=30.33 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=56.2
Q ss_pred cCcCcccccceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCC---------------------------
Q 027369 85 EQIPGLNTLGVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL--------------------------- 137 (224)
Q Consensus 85 ~~~P~L~~lgis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~--------------------------- 137 (224)
-.+|+.+..++.+...--+.|.+.|.|.-|. .-++.-+.|+.++.+.-+...
T Consensus 240 c~~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~fp 318 (355)
T KOG2132|consen 240 CSFPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAFP 318 (355)
T ss_pred eecCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhhh
Confidence 3566666555666666556688999998885 788888999988887644310
Q ss_pred ---CCeeEEEEecCCCEEEEcCCCeeEEEeC
Q 027369 138 ---NNTLIAKVLNKGDVFVFPIGMIHFQFNI 165 (224)
Q Consensus 138 ---~~~~~~~~L~~GDv~v~P~G~~H~~~N~ 165 (224)
..+.....|++||++++|+-..|+....
T Consensus 319 ~~~k~~~l~~lL~pGe~L~iP~kwwhyvrs~ 349 (355)
T KOG2132|consen 319 KFAKARFLDCLLEPGEALFIPPKWWHYVRSL 349 (355)
T ss_pred HHHHHHHHHHhcCCchhccccHHHhhhhhhc
Confidence 0112234689999999999999987543
No 154
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=29.44 E-value=2.5e+02 Score=24.75 Aligned_cols=56 Identities=25% Similarity=0.414 Sum_probs=34.2
Q ss_pred EEcCCC---cCCceeCCCC--------cEEEEE----EecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCC
Q 027369 101 DFAPYG---QNPPHTHPRA--------TEILVV----LEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGM 158 (224)
Q Consensus 101 ~l~pgg---~~ppH~Hp~a--------~Ei~yV----l~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~ 158 (224)
.+.||| .-|||-|.+. +|..|- -||=+.-.+.++++ .--.+..+.-||++.+|+|.
T Consensus 159 V~Tp~Gn~SSYPPHKHD~d~~p~Es~LEEtYYHrlnP~QGF~fQRVYTddr--sLDEtmaV~~~dvvlVP~GY 229 (270)
T COG3718 159 VITPGGNWSSYPPHKHDEDNLPHESYLEETYYHRLNPPQGFAFQRVYTDDR--SLDETMAVENGDVVLVPKGY 229 (270)
T ss_pred EEcCCCCcCCCCCCcccccCCccchhhhhhhhhccCccccceEEEEEcCCC--cccceeeeecCCEEEecCCc
Confidence 467777 3599999765 344443 25644444443331 11124678999999999985
No 155
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=29.34 E-value=52 Score=23.12 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=13.8
Q ss_pred CchhhHHHHHHHHHHHhhhhhccCCC
Q 027369 1 MKGVQLLLGFALLILASSLASAYDPS 26 (224)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~d~~ 26 (224)
|..+++.+|++|+++- +++.-||++
T Consensus 1 mnn~Si~VLlaLvLIg-~fAVqSdag 25 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIG-SFAVQSDAG 25 (71)
T ss_pred CCchhHHHHHHHHHHh-hheeeecCc
Confidence 6666555544444433 455667775
No 156
>PLN02288 mannose-6-phosphate isomerase
Probab=28.39 E-value=39 Score=31.69 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=18.0
Q ss_pred EEEecCCCEEEEcCCCeeEE
Q 027369 143 AKVLNKGDVFVFPIGMIHFQ 162 (224)
Q Consensus 143 ~~~L~~GDv~v~P~G~~H~~ 162 (224)
...|+|||.+++|+|.+|..
T Consensus 252 ~v~L~PGeaifl~ag~~HAY 271 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAY 271 (394)
T ss_pred eEecCCCCEEEecCCCCcee
Confidence 36899999999999999974
No 157
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=28.33 E-value=3.4e+02 Score=22.42 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=46.0
Q ss_pred CceeCCCCcEEEEEEec-EEEEEEEecCCC--CCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEEEEE
Q 027369 109 PPHTHPRATEILVVLEG-TLYVGFVTSNQL--NNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAFA 174 (224)
Q Consensus 109 ppH~Hp~a~Ei~yVl~G-~~~v~~~~~~~~--~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~~i~ 174 (224)
..-.||..++.++-+.| ..++-++.+.+. -+.+..+....|+.+..-+|.+|...-.=+.+.-++.
T Consensus 72 ~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~v 140 (171)
T PRK13395 72 MMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVV 140 (171)
T ss_pred eEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEE
Confidence 34558888999999999 777777754311 1346678999999999999999985433233444443
No 158
>PHA00672 hypothetical protein
Probab=28.16 E-value=3.1e+02 Score=21.88 Aligned_cols=68 Identities=16% Similarity=0.024 Sum_probs=50.4
Q ss_pred ceEEEEEEEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCCCcEE
Q 027369 94 GVSAARIDFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAV 171 (224)
Q Consensus 94 gis~~rv~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~~~a~ 171 (224)
|+....+.++.|....=-.|. - |-+++.+|.+++....+ .++|+.=.++.-|+|--...+..-++.+.
T Consensus 46 GvYARei~IPkGt~LtG~~hk-f-~~~ii~sG~itV~tdge--------~~rl~g~~~i~~~aG~KragyAHeDT~wt 113 (152)
T PHA00672 46 GVYARTIRIPAGVALTGALIK-V-STVLIFSGHATVFIGGE--------AVELRGYHVIPASAGRKQAFVAHADTDLT 113 (152)
T ss_pred ceeEEEEeccCceeeeeeeeE-e-eEEEEecccEEEEeCCc--------EEEEecceeeecCCCcccceeeeccceEE
Confidence 788888999999988777784 3 44599999999975422 36788888888888877766665555443
No 159
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=26.90 E-value=80 Score=27.64 Aligned_cols=37 Identities=22% Similarity=0.142 Sum_probs=27.7
Q ss_pred EEEecCCCEEEEcCCCeeEE-EeCCCCc-EEEEEEEcCC
Q 027369 143 AKVLNKGDVFVFPIGMIHFQ-FNIGKTN-AVAFAGFGSQ 179 (224)
Q Consensus 143 ~~~L~~GDv~v~P~G~~H~~-~N~G~~~-a~~i~~~~s~ 179 (224)
...+++||+++|-.-++|.- .|.++.+ ..++..|++.
T Consensus 212 ~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~ 250 (277)
T TIGR02408 212 TFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSV 250 (277)
T ss_pred eeccCCceEEEEccccccCCCCCCCCCcceeEEEEEecC
Confidence 45689999999999999995 5766554 4455567654
No 160
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=26.35 E-value=1.3e+02 Score=29.31 Aligned_cols=46 Identities=26% Similarity=0.327 Sum_probs=30.5
Q ss_pred EEcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEE
Q 027369 101 DFAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 101 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~ 152 (224)
.+.||-.+----- -+.|+.+|.+|.+.+- +++ +...-.+|++|++|
T Consensus 334 vfSPgDyICrKGd-vgkEMyIVk~G~L~Vv--~dD---g~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 334 VFSPGDYICRKGD-VGKEMYIVKEGKLAVV--ADD---GVTVFVTLKAGSVF 379 (536)
T ss_pred eeCCCCeEEecCc-ccceEEEEEccEEEEE--ecC---CcEEEEEecCCcee
Confidence 3455554433322 3689999999999874 444 44445789999887
No 161
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=26.04 E-value=76 Score=19.77 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=18.7
Q ss_pred CCCHHHHHHhcCCCHHHHHHHhhhcc
Q 027369 196 PINPDFLGKAFQLDPQVVKDLQNKFM 221 (224)
Q Consensus 196 ~~~~~vLa~af~~~~~~v~~l~~~~~ 221 (224)
+.+..-+++.++++..+|.+..++|.
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~ 42 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYR 42 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT---
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcc
Confidence 47888999999999999999999875
No 162
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=25.03 E-value=29 Score=26.35 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=22.7
Q ss_pred cceeeecCCCCCcceecCcccCCCCCCCCCCeee
Q 027369 29 QDICVAIDEPKNAVFVNGKFCKDPKLAKPEDFFF 62 (224)
Q Consensus 29 ~dfcv~~~~~~~~~~~~g~~ck~p~~v~~~df~f 62 (224)
+|.|-. +.+.+||..+|+.+.|...|-.-
T Consensus 28 k~~~~~-----GrV~vNG~~aKpS~~VK~GD~l~ 56 (100)
T COG1188 28 KEMIEG-----GRVKVNGQRAKPSKEVKVGDILT 56 (100)
T ss_pred HHHHHC-----CeEEECCEEcccccccCCCCEEE
Confidence 466655 46999999999999998887643
No 163
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=22.46 E-value=79 Score=19.51 Aligned_cols=10 Identities=50% Similarity=1.019 Sum_probs=6.6
Q ss_pred CcceecCcccC
Q 027369 40 NAVFVNGKFCK 50 (224)
Q Consensus 40 ~~~~~~g~~ck 50 (224)
+.|.+||. |+
T Consensus 24 G~ViING~-C~ 33 (36)
T PF08194_consen 24 GNVIINGK-CI 33 (36)
T ss_pred CeEEECce-ee
Confidence 45788885 44
No 164
>PRK15194 type-1 fimbrial protein subunit A; Provisional
Probab=22.03 E-value=1.5e+02 Score=24.24 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=11.5
Q ss_pred CchhhHHHHHHHHHHHhhhhhccCCCC
Q 027369 1 MKGVQLLLGFALLILASSLASAYDPSP 27 (224)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~d~~~ 27 (224)
||...+.++++.+++.+..+.|.|+++
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~a~~~~~ 27 (185)
T PRK15194 1 MKLRFISSAIASLLFVAGAAYAADPTP 27 (185)
T ss_pred CchHHHHHHHHHHHHHhhhhhhccccc
Confidence 666443332222223333345556544
No 165
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=21.08 E-value=36 Score=34.86 Aligned_cols=63 Identities=16% Similarity=0.026 Sum_probs=35.2
Q ss_pred EcCCCcCCceeCCCCcEEEEEEecEEEEEEEecCCCCCeeEEEEecCCCEEEEcCCCeeEEEeCCC
Q 027369 102 FAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 167 (224)
Q Consensus 102 l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~G~ 167 (224)
.+-|.-+++-.||-.+.-.|+-++- +..+-.+-| -+-.+.+=..||.++||+|.+|..+|.-.
T Consensus 762 ~E~~~~~~~v~hPIhDQS~YLd~~l-r~RLkeEyG--Ve~WtfvQ~LGdAVfIPAGaPHQVrNLkS 824 (889)
T KOG1356|consen 762 KEQGHEVPKVHHPIHDQSWYLDRYL-RRRLKEEYG--VEPWTFVQFLGDAVFIPAGAPHQVRNLKS 824 (889)
T ss_pred HHhcCCCCcccCCCcccceeccHHH-HHHHHHHhC--CCccchhhcccceEEecCCCcHHhhhhhh
Confidence 4445555666677555555543321 000000000 12234555789999999999999988643
Done!