Query 027371
Match_columns 224
No_of_seqs 86 out of 88
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 08:57:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09765 WD-3: WD-repeat regio 100.0 2.7E-65 5.8E-70 461.6 12.4 181 12-193 97-291 (291)
2 KOG3268 Predicted E3 ubiquitin 100.0 3.4E-39 7.5E-44 273.9 -0.8 173 46-221 2-181 (234)
3 cd00195 UBCc Ubiquitin-conjuga 96.4 0.034 7.3E-07 44.8 9.3 83 17-99 2-109 (141)
4 PF00179 UQ_con: Ubiquitin-con 96.1 0.079 1.7E-06 42.5 10.0 82 18-99 1-108 (140)
5 PLN00172 ubiquitin conjugating 96.0 0.12 2.5E-06 42.7 10.8 84 17-100 4-111 (147)
6 PTZ00390 ubiquitin-conjugating 95.9 0.12 2.6E-06 42.9 10.3 85 16-100 4-112 (152)
7 smart00212 UBCc Ubiquitin-conj 95.6 0.11 2.4E-06 41.9 9.1 82 18-99 2-109 (145)
8 COG5078 Ubiquitin-protein liga 95.4 0.15 3.2E-06 43.0 9.2 85 15-99 6-115 (153)
9 KOG0417 Ubiquitin-protein liga 94.8 0.21 4.6E-06 41.9 8.4 83 17-99 4-110 (148)
10 KOG0427 Ubiquitin conjugating 90.4 3.1 6.8E-05 34.7 9.2 86 16-101 17-126 (161)
11 KOG0418 Ubiquitin-protein liga 89.0 3 6.4E-05 36.6 8.5 56 16-71 5-73 (200)
12 PF05743 UEV: UEV domain; Int 83.3 2.4 5.1E-05 34.0 4.7 45 54-98 51-114 (121)
13 KOG0420 Ubiquitin-protein liga 81.7 6.3 0.00014 34.1 6.9 54 40-93 61-132 (184)
14 KOG0422 Ubiquitin-protein liga 80.1 11 0.00023 31.8 7.5 83 17-99 5-112 (153)
15 PF05773 RWD: RWD domain; Int 79.4 4.9 0.00011 30.0 5.1 39 38-76 29-74 (113)
16 smart00591 RWD domain in RING 75.9 29 0.00062 25.6 8.7 20 53-72 43-62 (107)
17 KOG0896 Ubiquitin-conjugating 75.0 3.8 8.2E-05 34.1 3.5 56 108-163 10-82 (138)
18 KOG0424 Ubiquitin-protein liga 74.3 6.7 0.00015 33.1 4.8 51 50-100 55-121 (158)
19 PF13670 PepSY_2: Peptidase pr 67.0 29 0.00063 25.3 6.5 45 16-61 31-76 (83)
20 KOG0416 Ubiquitin-protein liga 65.2 23 0.00051 30.7 6.3 42 30-71 21-67 (189)
21 KOG0677 Actin-related protein 64.5 4.2 9.1E-05 37.9 1.8 45 14-58 309-354 (389)
22 COG3975 Predicted protease wit 54.9 19 0.00041 36.2 4.6 95 42-151 2-97 (558)
23 KOG0419 Ubiquitin-protein liga 53.8 35 0.00076 28.6 5.3 50 50-99 50-113 (152)
24 KOG0421 Ubiquitin-protein liga 49.2 36 0.00077 28.9 4.7 27 50-76 75-101 (175)
25 KOG0423 Ubiquitin-protein liga 48.5 13 0.00029 32.3 2.2 140 6-155 2-188 (223)
26 KOG3821 Heparin sulfate cell s 36.7 82 0.0018 31.8 5.9 78 80-172 369-459 (563)
27 COG0721 GatC Asp-tRNAAsn/Glu-t 36.7 70 0.0015 24.7 4.4 39 90-128 22-65 (96)
28 PF14461 Prok-E2_B: Prokaryoti 34.4 1.1E+02 0.0024 24.4 5.4 52 49-100 34-105 (133)
29 PF06113 BRE: Brain and reprod 34.4 60 0.0013 30.8 4.3 66 115-183 34-109 (333)
30 PF13467 RHH_4: Ribbon-helix-h 33.1 27 0.00058 25.6 1.4 12 103-114 20-31 (67)
31 PF14801 GCD14_N: tRNA methylt 32.9 53 0.0011 23.3 2.8 18 42-59 11-28 (54)
32 PF15225 IL32: Interleukin 32 32.2 70 0.0015 25.1 3.7 29 81-109 32-61 (104)
33 smart00591 RWD domain in RING 31.3 1.1E+02 0.0024 22.3 4.7 24 139-162 43-66 (107)
34 KOG0895 Ubiquitin-conjugating 30.1 52 0.0011 35.7 3.4 56 52-107 899-977 (1101)
35 PF07559 FlaE: Flagellar basal 30.0 65 0.0014 24.9 3.3 22 40-61 12-33 (130)
36 PF10976 DUF2790: Protein of u 29.1 87 0.0019 23.5 3.7 32 30-61 37-73 (78)
37 PF02996 Prefoldin: Prefoldin 27.6 2.7E+02 0.006 21.1 7.5 50 86-145 6-55 (120)
38 TIGR00293 prefoldin, archaeal 26.0 2.7E+02 0.0058 21.6 6.2 22 127-148 46-67 (126)
39 COG1264 PtsG Phosphotransferas 25.8 31 0.00066 26.2 0.7 27 23-49 8-35 (88)
40 PF03951 Gln-synt_N: Glutamine 24.1 1.3E+02 0.0028 22.2 3.8 25 37-61 1-25 (84)
41 KOG4018 Uncharacterized conser 23.0 1.6E+02 0.0034 26.4 4.7 26 52-77 50-75 (215)
42 PF00367 PTS_EIIB: phosphotran 21.7 67 0.0014 20.4 1.6 27 23-49 5-32 (35)
43 KOG2553 Pseudouridylate syntha 21.4 53 0.0011 32.0 1.5 50 119-182 82-135 (416)
44 cd01763 Sumo Small ubiquitin-r 21.0 2.9E+02 0.0063 20.3 5.2 22 38-59 9-30 (87)
45 cd00212 PTS_IIB_glc PTS_IIB, P 20.7 69 0.0015 23.4 1.7 27 23-49 8-35 (78)
46 cd00529 RuvC_resolvase Hollida 20.3 2.9E+02 0.0062 22.5 5.5 54 30-102 1-58 (154)
No 1
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=100.00 E-value=2.7e-65 Score=461.56 Aligned_cols=181 Identities=39% Similarity=0.778 Sum_probs=157.0
Q ss_pred CchhHHHHHHHHHHhccceeeee--cCCcceEEEEEEeCCCCEEEEEEEecCCCCCCCCceeecCCCceecccCc-cCcH
Q 027371 12 SSSFSRSVYSEIEEVGWEHLVRL--SEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSR-KSRL 88 (224)
Q Consensus 12 ~~~fys~li~Eie~iGW~kl~~i--d~~ls~i~l~~~D~~gR~H~l~v~l~~~yP~~~P~~~~dlP~~f~~~W~~-~ssL 88 (224)
+++||++|++||++|||++++++ |++|++|+|+++|++ |+|+|+|+++++||.++|+|++|+|++|.+.|++ +|+|
T Consensus 97 p~~~ys~ll~EIe~IGW~kl~~i~~d~~ls~i~l~~~D~~-R~H~l~l~l~~~yp~~~p~~~~~~P~~~~~~w~~~~ssL 175 (291)
T PF09765_consen 97 PPQYYSNLLKEIEAIGWDKLVQIQFDDDLSTIKLKIFDSS-RQHYLELKLPSNYPFEPPSCSLDLPIPFSLSWSPSQSSL 175 (291)
T ss_dssp --GGC-CHHHHHHHHHCGCCEEEEE-CCCSEEEEEEETTC-EEEEEEEETTTTTTTSEEEECS-TTS-HHHHHHCHT-SH
T ss_pred CcHHHHHHHHHHHHhccccceEEecCCCccEEEEEEEcCC-ceEEEEEEECCCCCCCCceeeCCCCcchhhhhcccccCH
Confidence 49999999999999999999999 999999999999999 9999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhccceeecCCCCCCCceeEEEEeCCceEEEEEEcCCCCCCCCceeeeC---Cchhh
Q 027371 89 KDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMG---SDPMV 165 (224)
Q Consensus 89 ~~v~~qF~~~Le~lq~FWd~LdeID~~~wVLEP~~Ptrs~t~RRIaLg~~vsl~ieVdP~~P~~lPe~~FlG---~~~~V 165 (224)
+++++||+++||+||+|||+|||||++||||||++|+||+++||||||+||||+|+|||+||+|+|+|+|+| |+++|
T Consensus 176 ~~v~~qF~~~le~lq~fw~~ld~iD~~~~VleP~~p~~~~~~RrI~l~~~~sl~i~vdP~~P~~~p~~~~l~f~G~~~~v 255 (291)
T PF09765_consen 176 KDVVQQFQEALESLQEFWDVLDEIDENCWVLEPEKPTRSDTYRRIALGNNVSLKIEVDPRHPRMLPECRFLGFIGPDHEV 255 (291)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHS-EEESSS--TT--EEEEEEETTEEEEEEE-TTSTTSTTCCEEECEESSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcceecCCCCCCccccEEEEEECCceEEEEEEcCCCCccCcccccccccCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999977555 99999
Q ss_pred HHHHHHHhhcccCCCCCCCcee-------e-eccch
Q 027371 166 NSLRKTWQRNSKRCASSSSFCL-------L-RVPIG 193 (224)
Q Consensus 166 ~~Lr~~l~~n~~~Wd~~~sl~e-------~-~fP~~ 193 (224)
++||++|++|+++||+++++++ + +||++
T Consensus 256 ~~lr~~~~~n~~~Wd~~~~~~~NL~~il~~~~fP~p 291 (291)
T PF09765_consen 256 NPLREKLNDNLHNWDPDKSLLENLERILEICEFPSP 291 (291)
T ss_dssp HHHHHHHHHHHHC--TTS-HHHHHHHHCT-SS----
T ss_pred HHHHHHHhcchhhcCCCCCHHHHHHHHhCcccCCCC
Confidence 9999999999999999999988 5 99974
No 2
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-39 Score=273.86 Aligned_cols=173 Identities=24% Similarity=0.330 Sum_probs=154.5
Q ss_pred EeCCCCEEEEEEEecCCCCCCCCceeecCCCceecccCccCcHHHHHHHHHHHHHHHHHHHHhHHhhhccceeecCCCCC
Q 027371 46 IDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPS 125 (224)
Q Consensus 46 ~D~~gR~H~l~v~l~~~yP~~~P~~~~dlP~~f~~~W~~~ssL~~v~~qF~~~Le~lq~FWd~LdeID~~~wVLEP~~Pt 125 (224)
.|.+||.|.+++.+..+||++.|.-.+|.|++|-+.|.|||++..||+||.+++|+++.||+.||++|++|||+||++|.
T Consensus 2 edaSG~~h~i~l~~ea~~pae~pd~fvd~pi~FCad~~pqs~~IsiYsqflaa~esiea~~~~ide~deKT~l~e~ekP~ 81 (234)
T KOG3268|consen 2 EDASGECHGIELCEEAAKPAEFPDKFVDEPINFCADVGPQSCAISIYSQFLAAFESIEACNAPIDEGDEKTLLHELEKPA 81 (234)
T ss_pred CCcccchhHHHHHHHhcCccccchhhhcccccceeecCCcceehHHHHHHHHHHHhHHhhcCcCccccccchhccccCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEeCCceEEEEEEcCCCCCCCCceeeeCCchhhHHHHHHHhhcccCCCCCCCcee-------eeccchhhhhh
Q 027371 126 RANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRCASSSSFCL-------LRVPIGLRLRC 198 (224)
Q Consensus 126 rs~t~RRIaLg~~vsl~ieVdP~~P~~lPe~~FlG~~~~V~~Lr~~l~~n~~~Wd~~~sl~e-------~~fP~~~~~~~ 198 (224)
|+++.|||++||+|+|.|+|||+||.|||||.|+|+||++.|+.-+...|+++|||+.+.++ .-||-+.-+.-
T Consensus 82 RaaaaRRIa~GNd~~I~ieiD~k~PkmLPEcf~lgadhv~~P~gie~~~~i~L~dPe~~~led~kd~lE~df~a~a~Lek 161 (234)
T KOG3268|consen 82 RAAAARRIAAGNDCIIIIEIDFKDPKMLPECFELGADHVSFPEGIECILGIELPDPEGLQLEDDKDQLECDFCAAAFLEK 161 (234)
T ss_pred hHHHHHHhhcCCceEEEEEecCCCCccchhhHhhccccccccccceEEeccccCCccccccccccceeeeCccHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999987776 55665544321
Q ss_pred hhccccCceeEEEeeccCCCCCC
Q 027371 199 RLSVTEGECRCYCFNKKKTSTLP 221 (224)
Q Consensus 199 ~~~~~~gec~~~c~~~~~~~~~~ 221 (224)
+.. -|-|| |||-+..+.+.|
T Consensus 162 dd~--~~~cg-icyayqldGTip 181 (234)
T KOG3268|consen 162 DDE--LGACG-ICYAYQLDGTIP 181 (234)
T ss_pred chh--hhccc-ceeeeecCCccc
Confidence 111 23444 566666666655
No 3
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=96.39 E-value=0.034 Score=44.78 Aligned_cols=83 Identities=18% Similarity=0.368 Sum_probs=57.9
Q ss_pred HHHHHHHHHhccc-----eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC----------
Q 027371 17 RSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY---------- 76 (224)
Q Consensus 17 s~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~---------- 76 (224)
++|.+|+.++.=+ .+.-.+.++....+.+.-. .|....++|.++.+||.+||.+...-+.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 5788888887432 2333344788888877644 3678889999999999999999864221
Q ss_pred ----ceecc-cCccCcHHHHHHHHHHHH
Q 027371 77 ----IFNLK-WSRKSRLKDLLQQFREHL 99 (224)
Q Consensus 77 ----~f~~~-W~~~ssL~~v~~qF~~~L 99 (224)
.+.-. |++..+|.+|+...+..+
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l 109 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLL 109 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHH
Confidence 01113 998888988888776665
No 4
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=96.09 E-value=0.079 Score=42.50 Aligned_cols=82 Identities=21% Similarity=0.392 Sum_probs=55.8
Q ss_pred HHHHHHHHhccc-----eeeeec-CCcceEEEEEEe-C----CCCEEEEEEEecCCCCCCCCceeecCCC----------
Q 027371 18 SVYSEIEEVGWE-----HLVRLS-EDLKFLSFRVID-K----KGRVHCMEIQLDKNYPRSPPSISADVPY---------- 76 (224)
Q Consensus 18 ~li~Eie~iGW~-----kl~~id-~~ls~i~l~~~D-~----~gR~H~l~v~l~~~yP~~~P~~~~dlP~---------- 76 (224)
||.+|+.++.=+ .+.-.+ .++....+.+.. . .|....++|.+|.+||.++|.+...-|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 577888766322 333333 479999999876 1 3889999999999999999998755431
Q ss_pred ----ceec-ccCccCcHHHHHHHHHHHH
Q 027371 77 ----IFNL-KWSRKSRLKDLLQQFREHL 99 (224)
Q Consensus 77 ----~f~~-~W~~~ssL~~v~~qF~~~L 99 (224)
.+.- .|++..+|.+|+..++..|
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll 108 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLL 108 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHH
T ss_pred chhhhhhcccCCcccccccHHHHHHHHH
Confidence 1111 3999889988888777666
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=95.99 E-value=0.12 Score=42.66 Aligned_cols=84 Identities=18% Similarity=0.284 Sum_probs=60.4
Q ss_pred HHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC---------c
Q 027371 17 RSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---------I 77 (224)
Q Consensus 17 s~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~---------~ 77 (224)
++|.+|+.++-=+ .+.-.+.|+....+.+.... |....++|.++.+||.+||.+..--+. .
T Consensus 4 ~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~ 83 (147)
T PLN00172 4 KRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGS 83 (147)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCE
Confidence 5888999888422 23334567888888877332 678899999999999999988754431 0
Q ss_pred -----eecccCccCcHHHHHHHHHHHHH
Q 027371 78 -----FNLKWSRKSRLKDLLQQFREHLE 100 (224)
Q Consensus 78 -----f~~~W~~~ssL~~v~~qF~~~Le 100 (224)
+.-.|++..+|.+|+...+..|.
T Consensus 84 iCl~il~~~W~p~~ti~~il~~i~~ll~ 111 (147)
T PLN00172 84 ICLDILRDQWSPALTVSKVLLSISSLLT 111 (147)
T ss_pred EEcccCcCCCCCcCcHHHHHHHHHHHHh
Confidence 11269999999988877766663
No 6
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=95.85 E-value=0.12 Score=42.91 Aligned_cols=85 Identities=16% Similarity=0.289 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC---------
Q 027371 16 SRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY--------- 76 (224)
Q Consensus 16 ys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~--------- 76 (224)
-++|.+|+.++.=+ .+.-.+.|+...++.+... .|....++|.+|.+||.+||.+..-=+.
T Consensus 4 ~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G 83 (152)
T PTZ00390 4 SKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLG 83 (152)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCC
Confidence 36899999988421 3444567788888888743 2689999999999999999987643221
Q ss_pred ce-----ecccCccCcHHHHHHHHHHHHH
Q 027371 77 IF-----NLKWSRKSRLKDLLQQFREHLE 100 (224)
Q Consensus 77 ~f-----~~~W~~~ssL~~v~~qF~~~Le 100 (224)
.+ .=.|++..++.+|+..++..|.
T Consensus 84 ~iCl~iL~~~W~p~~ti~~iL~~i~~ll~ 112 (152)
T PTZ00390 84 RICLDILKDKWSPALQIRTVLLSIQALLS 112 (152)
T ss_pred eEECccCcccCCCCCcHHHHHHHHHHHHh
Confidence 01 1269999999888877777664
No 7
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=95.61 E-value=0.11 Score=41.91 Aligned_cols=82 Identities=18% Similarity=0.333 Sum_probs=58.7
Q ss_pred HHHHHHHHhccce---e-ee--ecCCcceEEEEEEeC-----CCCEEEEEEEecCCCCCCCCceeecCCC----------
Q 027371 18 SVYSEIEEVGWEH---L-VR--LSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY---------- 76 (224)
Q Consensus 18 ~li~Eie~iGW~k---l-~~--id~~ls~i~l~~~D~-----~gR~H~l~v~l~~~yP~~~P~~~~dlP~---------- 76 (224)
+|.+|+.++--+. + +. -++++...++.+... .|....++|.++.+||.++|.|...-|.
T Consensus 2 Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~ 81 (145)
T smart00212 2 RLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGE 81 (145)
T ss_pred hHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCC
Confidence 6777887765331 1 12 234788888888742 3678899999999999999999876661
Q ss_pred ---c-ee-cccCccCcHHHHHHHHHHHH
Q 027371 77 ---I-FN-LKWSRKSRLKDLLQQFREHL 99 (224)
Q Consensus 77 ---~-f~-~~W~~~ssL~~v~~qF~~~L 99 (224)
. +. -.|++..+|.+++...+..+
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l 109 (145)
T smart00212 82 ICLDILKQEKWSPATTLETVLLSIQSLL 109 (145)
T ss_pred EehhhcCCCCCCCCCcHHHHHHHHHHHH
Confidence 1 11 26998899999888877766
No 8
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.15 Score=42.98 Aligned_cols=85 Identities=15% Similarity=0.337 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhcccee-----eeecC-CcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC-------
Q 027371 15 FSRSVYSEIEEVGWEHL-----VRLSE-DLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY------- 76 (224)
Q Consensus 15 fys~li~Eie~iGW~kl-----~~id~-~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~------- 76 (224)
=.++|.+|++.+.-+.. .-.+. ++.+-+..+..-. |+.-.++|++|.+||.+||.+...=+.
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 46799999999987641 11233 6777777776543 899999999999999999988755441
Q ss_pred -------ceecccCccCcHHHHHHHHHHHH
Q 027371 77 -------IFNLKWSRKSRLKDLLQQFREHL 99 (224)
Q Consensus 77 -------~f~~~W~~~ssL~~v~~qF~~~L 99 (224)
++.-.|+|.-+|..|+...+..|
T Consensus 86 ~G~vCLdIL~~~WsP~~~l~sILlsl~slL 115 (153)
T COG5078 86 SGNVCLDILKDRWSPVYTLETILLSLQSLL 115 (153)
T ss_pred CCCChhHHHhCCCCccccHHHHHHHHHHHH
Confidence 12238999888888777666665
No 9
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.21 Score=41.91 Aligned_cols=83 Identities=18% Similarity=0.353 Sum_probs=62.6
Q ss_pred HHHHHHHHHhccceeeee-----cCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCC----------
Q 027371 17 RSVYSEIEEVGWEHLVRL-----SEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY---------- 76 (224)
Q Consensus 17 s~li~Eie~iGW~kl~~i-----d~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~---------- 76 (224)
++|++|+..+.-+....+ ++++.+.+.++..-. |-+..|.|.+|..||+.||.+..-=+.
T Consensus 4 ~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~ 83 (148)
T KOG0417|consen 4 KRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGR 83 (148)
T ss_pred HHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcccc
Confidence 389999998887755433 445666777776543 789999999999999999977654441
Q ss_pred ----ceecccCccCcHHHHHHHHHHHH
Q 027371 77 ----IFNLKWSRKSRLKDLLQQFREHL 99 (224)
Q Consensus 77 ----~f~~~W~~~ssL~~v~~qF~~~L 99 (224)
++.-+|+|..+|..|+...+..|
T Consensus 84 IclDILk~~WsPAl~i~~VllsI~sLL 110 (148)
T KOG0417|consen 84 ICLDILKDQWSPALTISKVLLSICSLL 110 (148)
T ss_pred chHHhhhccCChhhHHHHHHHHHHHHh
Confidence 23348999999999988888776
No 10
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=90.38 E-value=3.1 Score=34.67 Aligned_cols=86 Identities=14% Similarity=0.246 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhccc----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCceeecCCCcee-------
Q 027371 16 SRSVYSEIEEVGWE----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIFN------- 79 (224)
Q Consensus 16 ys~li~Eie~iGW~----kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~~dlP~~f~------- 79 (224)
-.+|.+|+-++.-+ -.+.+..+++.-.+.+..+. |-...|-++++..||.+.|.+...=|.+..
T Consensus 17 t~RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNG 96 (161)
T KOG0427|consen 17 TNRLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNG 96 (161)
T ss_pred HHHHHHHHHHHhcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCC
Confidence 45788998887655 34668888999888888775 467889999999999999977644442221
Q ss_pred --------cccCccCcHHHHHHHHHHHHHH
Q 027371 80 --------LKWSRKSRLKDLLQQFREHLEK 101 (224)
Q Consensus 80 --------~~W~~~ssL~~v~~qF~~~Le~ 101 (224)
=.|+|.-++..|+--.+.+|.+
T Consensus 97 HICL~iL~d~WsPAmsv~SvClSIlSMLSS 126 (161)
T KOG0427|consen 97 HICLDILYDSWSPAMSVQSVCLSILSMLSS 126 (161)
T ss_pred eEEEEeecccCCcchhhHHHHHHHHHHHcc
Confidence 1899999999999888888754
No 11
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.96 E-value=3 Score=36.56 Aligned_cols=56 Identities=25% Similarity=0.407 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhccc--------eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCcee
Q 027371 16 SRSVYSEIEEVGWE--------HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSIS 71 (224)
Q Consensus 16 ys~li~Eie~iGW~--------kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~ 71 (224)
++++-+|..++-=+ ++.-++.+++.|+..+..-- |-...|.|++|.+||+.||.+.
T Consensus 5 ~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~ 73 (200)
T KOG0418|consen 5 FKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVK 73 (200)
T ss_pred HHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCcee
Confidence 46666776666544 46677889999999987653 6678999999999999999874
No 12
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=83.29 E-value=2.4 Score=33.98 Aligned_cols=45 Identities=31% Similarity=0.505 Sum_probs=29.5
Q ss_pred EEEEEecCCCCCCCCceeecCCCceec------------------ccCc-cCcHHHHHHHHHHH
Q 027371 54 CMEIQLDKNYPRSPPSISADVPYIFNL------------------KWSR-KSRLKDLLQQFREH 98 (224)
Q Consensus 54 ~l~v~l~~~yP~~~P~~~~dlP~~f~~------------------~W~~-~ssL~~v~~qF~~~ 98 (224)
-+.|-++.+||.++|.|.++....-.+ +|+. .|+|.++++...++
T Consensus 51 Pi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~~ 114 (121)
T PF05743_consen 51 PICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQNWNPPSSNLVDLVQELQAV 114 (121)
T ss_dssp EEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHHT--TTTS-HHHHHHHHHHC
T ss_pred eEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhccCCCCCCCHHHHHHHHHHH
Confidence 567788999999999999876532111 8987 78888888776654
No 13
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.74 E-value=6.3 Score=34.15 Aligned_cols=54 Identities=19% Similarity=0.482 Sum_probs=37.4
Q ss_pred eEEEEEEeC----CCCEEEEEEEecCCCCCCCCceee--cC--C-----C-----ceecccCccCcHHHHHH
Q 027371 40 FLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISA--DV--P-----Y-----IFNLKWSRKSRLKDLLQ 93 (224)
Q Consensus 40 ~i~l~~~D~----~gR~H~l~v~l~~~yP~~~P~~~~--dl--P-----~-----~f~~~W~~~ssL~~v~~ 93 (224)
.+++++.=. +|+.-...++++..||++||.+.+ .+ | - ++.-.|.|..+|.+|+.
T Consensus 61 ~~elti~PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~ 132 (184)
T KOG0420|consen 61 EFELTITPDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIY 132 (184)
T ss_pred eEEEEEccCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHhcCccccchHHHHH
Confidence 366665532 378899999999999999997653 22 2 1 22338998888887653
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.08 E-value=11 Score=31.81 Aligned_cols=83 Identities=22% Similarity=0.335 Sum_probs=54.7
Q ss_pred HHHHHHHHHhccce------eeeecCCcceEEEEEEeCC----CCEEEEEEEecCCCCCCCCcee---------------
Q 027371 17 RSVYSEIEEVGWEH------LVRLSEDLKFLSFRVIDKK----GRVHCMEIQLDKNYPRSPPSIS--------------- 71 (224)
Q Consensus 17 s~li~Eie~iGW~k------l~~id~~ls~i~l~~~D~~----gR~H~l~v~l~~~yP~~~P~~~--------------- 71 (224)
++|.+||+.+.=++ +...+.++-.-+..+.-.+ .-..-|+|.+|.+||+.||-+.
T Consensus 5 ~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~llipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gq 84 (153)
T KOG0422|consen 5 RRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLIPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQ 84 (153)
T ss_pred HHHHHHHHHHHhccHHHHhhhhcccccceeEEeEecCCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCc
Confidence 56777887776443 3344444444444443322 3456799999999999999653
Q ss_pred ecCCCceecccCccCcHHHHHHHHHHHH
Q 027371 72 ADVPYIFNLKWSRKSRLKDLLQQFREHL 99 (224)
Q Consensus 72 ~dlP~~f~~~W~~~ssL~~v~~qF~~~L 99 (224)
+=||..-+-+|.|.+...+|++--...+
T Consensus 85 vClPiis~EnWkP~T~teqVlqaLi~li 112 (153)
T KOG0422|consen 85 VCLPIISAENWKPATRTEQVLQALIALI 112 (153)
T ss_pred eeeeeeecccccCcccHHHHHHHHHHHh
Confidence 2356655669999999888876655554
No 15
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=79.45 E-value=4.9 Score=29.96 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=24.5
Q ss_pred cceEEEEE-------EeCCCCEEEEEEEecCCCCCCCCceeecCCC
Q 027371 38 LKFLSFRV-------IDKKGRVHCMEIQLDKNYPRSPPSISADVPY 76 (224)
Q Consensus 38 ls~i~l~~-------~D~~gR~H~l~v~l~~~yP~~~P~~~~dlP~ 76 (224)
-..+++++ .......-.|.+.+|.+||..+|.+.+.-+.
T Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 29 PPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp SEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred CCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 45566666 2344556678888999999989988855553
No 16
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=75.95 E-value=29 Score=25.56 Aligned_cols=20 Identities=35% Similarity=0.727 Sum_probs=16.3
Q ss_pred EEEEEEecCCCCCCCCceee
Q 027371 53 HCMEIQLDKNYPRSPPSISA 72 (224)
Q Consensus 53 H~l~v~l~~~yP~~~P~~~~ 72 (224)
-.|.+++|.+||..+|.+..
T Consensus 43 ~~l~~~~p~~YP~~~P~i~~ 62 (107)
T smart00591 43 LTLQVKLPENYPDEAPPISL 62 (107)
T ss_pred EEEEEECCCCCCCCCCCeEE
Confidence 46888888999998887764
No 17
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=75.04 E-value=3.8 Score=34.07 Aligned_cols=56 Identities=16% Similarity=0.052 Sum_probs=44.9
Q ss_pred hHHhhhccceeecCCCCCCCc-----------------eeEEEEeCCceEEEEEEcCCCCCCCCceeeeCCch
Q 027371 108 ILDEIDKSLWVIDLKNPSRAN-----------------VCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDP 163 (224)
Q Consensus 108 ~LdeID~~~wVLEP~~Ptrs~-----------------t~RRIaLg~~vsl~ieVdP~~P~~lPe~~FlG~~~ 163 (224)
-|+++++-+|++.|..-+.-. ..|-++=++--||+|+-+|..|.+.|.++|.-..+
T Consensus 10 lleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkin 82 (138)
T KOG0896|consen 10 LLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKIN 82 (138)
T ss_pred hhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEee
Confidence 578889999999998766422 45667777778999999999999999999975443
No 18
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.28 E-value=6.7 Score=33.12 Aligned_cols=51 Identities=25% Similarity=0.580 Sum_probs=40.4
Q ss_pred CCEEEEEEEecCCCCCCCCceeecCCC--------------cee--cccCccCcHHHHHHHHHHHHH
Q 027371 50 GRVHCMEIQLDKNYPRSPPSISADVPY--------------IFN--LKWSRKSRLKDLLQQFREHLE 100 (224)
Q Consensus 50 gR~H~l~v~l~~~yP~~~P~~~~dlP~--------------~f~--~~W~~~ssL~~v~~qF~~~Le 100 (224)
|-..-|++.++.+||.+||-|...-|. +++ -.|.|..+|+.|+.-.+..|+
T Consensus 55 Gg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~ 121 (158)
T KOG0424|consen 55 GGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLD 121 (158)
T ss_pred CceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhc
Confidence 556789999999999999999877663 111 149999999999888887774
No 19
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=67.05 E-value=29 Score=25.31 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhccceeeeecC-CcceEEEEEEeCCCCEEEEEEEecC
Q 027371 16 SRSVYSEIEEVGWEHLVRLSE-DLKFLSFRVIDKKGRVHCMEIQLDK 61 (224)
Q Consensus 16 ys~li~Eie~iGW~kl~~id~-~ls~i~l~~~D~~gR~H~l~v~l~~ 61 (224)
.+.+.+-++.-|| .+..++- +=...++++.|..||.+.+.|.-.+
T Consensus 31 ~~~~~~~l~~~G~-~v~~ve~~~~g~yev~~~~~dG~~~ev~vD~~t 76 (83)
T PF13670_consen 31 IEQAVAKLEAQGY-QVREVEFDDDGCYEVEARDKDGKKVEVYVDPAT 76 (83)
T ss_pred HHHHHHHHHhcCC-ceEEEEEcCCCEEEEEEEECCCCEEEEEEcCCC
Confidence 8899999999999 7766665 3346999999999999998886543
No 20
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.18 E-value=23 Score=30.72 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=32.6
Q ss_pred eeeeecCCcceEEEEEEeCC-----CCEEEEEEEecCCCCCCCCcee
Q 027371 30 HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSIS 71 (224)
Q Consensus 30 kl~~id~~ls~i~l~~~D~~-----gR~H~l~v~l~~~yP~~~P~~~ 71 (224)
++.-++++.+.+.+++..-+ |-.-.+.|.||.+||...|.+-
T Consensus 21 eV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIG 67 (189)
T KOG0416|consen 21 EVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIG 67 (189)
T ss_pred eEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCccc
Confidence 44555666888888876543 6678899999999999988774
No 21
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=64.47 E-value=4.2 Score=37.89 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHhccceeeeecCC-cceEEEEEEeCCCCEEEEEEE
Q 027371 14 SFSRSVYSEIEEVGWEHLVRLSED-LKFLSFRVIDKKGRVHCMEIQ 58 (224)
Q Consensus 14 ~fys~li~Eie~iGW~kl~~id~~-ls~i~l~~~D~~gR~H~l~v~ 58 (224)
..=|+|=+||.++=.+++.+-|++ |+.+++++.|.-.|+|.+-+-
T Consensus 309 GLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflG 354 (389)
T KOG0677|consen 309 GLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLG 354 (389)
T ss_pred CCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEc
Confidence 335889999999999999999988 999999999999999998663
No 22
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=54.94 E-value=19 Score=36.19 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=60.4
Q ss_pred EEEEEeCCCCEEEEEEEecCCCCCCCCceeecCCCcee-cccCccCcHHHHHHHHHHHHHHHHHHHHhHHhhhccceeec
Q 027371 42 SFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFN-LKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVID 120 (224)
Q Consensus 42 ~l~~~D~~gR~H~l~v~l~~~yP~~~P~~~~dlP~~f~-~~W~~~ssL~~v~~qF~~~Le~lq~FWd~LdeID~~~wVLE 120 (224)
+.++- ...+.|..+|.+.-.-+. |.+..+. ..|.|.|-+.-=+.++...+.- .++.||++.|++-
T Consensus 2 ~y~i~-p~p~~h~~~v~lt~~a~~-------~~~~~l~~p~w~PGsy~Iref~r~~~~i~a------~~~k~~k~~W~v~ 67 (558)
T COG3975 2 HYKIA-PSPLDHEFRVTLTFRADD-------DGPLELRLPAWVPGSYLIREFARNVVDITA------PLEKIGKNRWQVA 67 (558)
T ss_pred ceEec-CCCCcceEEEEEEeecCC-------CCceEEecccccCchhhHHHHhhCceeccc------hhhhccccceeee
Confidence 44555 678888888888642221 3444444 3688888765444444333333 8999999999999
Q ss_pred CCCCCCCceeEEEEeCCceEEEEEEcCCCCC
Q 027371 121 LKNPSRANVCRQINLGYNCIIMLSIHIDDPS 151 (224)
Q Consensus 121 P~~Ptrs~t~RRIaLg~~vsl~ieVdP~~P~ 151 (224)
+..-+-.-.||..|....+ =...|||.|-.
T Consensus 68 ~~~~~~~VrY~vyA~~~sv-r~~~l~~~~~f 97 (558)
T COG3975 68 AKDGPLTVRYRVYAADLSV-RTSILTPTHGF 97 (558)
T ss_pred cccCceEEEEEEEEecccc-cceeecCccce
Confidence 9886667788877765542 13344555443
No 23
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.84 E-value=35 Score=28.56 Aligned_cols=50 Identities=20% Similarity=0.564 Sum_probs=33.7
Q ss_pred CCEEEEEEEecCCCCCCCCcee-ecCCC-------------ceecccCccCcHHHHHHHHHHHH
Q 027371 50 GRVHCMEIQLDKNYPRSPPSIS-ADVPY-------------IFNLKWSRKSRLKDLLQQFREHL 99 (224)
Q Consensus 50 gR~H~l~v~l~~~yP~~~P~~~-~dlP~-------------~f~~~W~~~ssL~~v~~qF~~~L 99 (224)
|-...|+|++..+||..||++. +.-+- .+.-+|++.-.+..|+...|..|
T Consensus 50 ~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iClDiLqNrWsp~Ydva~ILtsiQslL 113 (152)
T KOG0419|consen 50 GGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVASILTSIQSLL 113 (152)
T ss_pred CceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchHHHHhcCCCCchhHHHHHHHHHHHh
Confidence 4566788999999999999886 22221 11227887766766666655554
No 24
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.23 E-value=36 Score=28.93 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=22.3
Q ss_pred CCEEEEEEEecCCCCCCCCceeecCCC
Q 027371 50 GRVHCMEIQLDKNYPRSPPSISADVPY 76 (224)
Q Consensus 50 gR~H~l~v~l~~~yP~~~P~~~~dlP~ 76 (224)
|-+.-|.+.+|.+||..||.+..--|+
T Consensus 75 gl~yklSl~Fp~~YPy~pP~vkFltpc 101 (175)
T KOG0421|consen 75 GLKYKLSLSFPNNYPYKPPTVKFLTPC 101 (175)
T ss_pred CcEEEEEEecCCCCCCCCCeeEeeccc
Confidence 556778899999999999999866664
No 25
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.54 E-value=13 Score=32.31 Aligned_cols=140 Identities=19% Similarity=0.283 Sum_probs=89.7
Q ss_pred ccccCCCchhHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCCCC-----EEEEEEEecCCCCCCCCceeecCC
Q 027371 6 CRESANSSSFSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKKGR-----VHCMEIQLDKNYPRSPPSISADVP 75 (224)
Q Consensus 6 ~~~~~~~~~fys~li~Eie~iGW~-----kl~~id~~ls~i~l~~~D~~gR-----~H~l~v~l~~~yP~~~P~~~~dlP 75 (224)
+++..-||...+.|.+|+.++.=+ |++-=+.||+.|+..+..-.|- -..+.+.|..+||++||--- =|-
T Consensus 2 ~snenlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgY-FlT 80 (223)
T KOG0423|consen 2 ASNENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGY-FLT 80 (223)
T ss_pred CcccCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcce-eee
Confidence 456778899999999999999754 7777788899999988776553 23455666779999988432 111
Q ss_pred Cce---------------ecccCccCcHHHHHHHH------------------HHHHHHHHHH---HHhHHhhhccceee
Q 027371 76 YIF---------------NLKWSRKSRLKDLLQQF------------------REHLEKLQEI---WNILDEIDKSLWVI 119 (224)
Q Consensus 76 ~~f---------------~~~W~~~ssL~~v~~qF------------------~~~Le~lq~F---Wd~LdeID~~~wVL 119 (224)
.+| .-.|++..-+..|+-.. .-.||.|.+| =..|.+|-...
T Consensus 81 KIFHPNVaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p--- 157 (223)
T KOG0423|consen 81 KIFHPNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP--- 157 (223)
T ss_pred eeccCCcccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC---
Confidence 111 22787764444433222 1124444444 34677887653
Q ss_pred cCCCCC-CCceeEEEEeCCceEEEEEEcCCCCCCCCc
Q 027371 120 DLKNPS-RANVCRQINLGYNCIIMLSIHIDDPSSLPE 155 (224)
Q Consensus 120 EP~~Pt-rs~t~RRIaLg~~vsl~ieVdP~~P~~lPe 155 (224)
..+. ++-+.|-.+.|+.-+ -+|-.+...|.
T Consensus 158 --~~~~~~ae~g~al~~g~~~~----~~pGA~g~~~~ 188 (223)
T KOG0423|consen 158 --KPKFKTAESGTALNVGQTNN----ETPGAAGAIPS 188 (223)
T ss_pred --CCCccccccccccccccccC----CCCCCCCCCCC
Confidence 3333 467788888885433 37777777764
No 26
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=36.75 E-value=82 Score=31.84 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=53.8
Q ss_pred cccCc-cCcHHHHHHHHHHHHHHHHHHHHhHHh----------hhccceeecCCCCCCCceeEEEEeCCceEEEEEEc--
Q 027371 80 LKWSR-KSRLKDLLQQFREHLEKLQEIWNILDE----------IDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIH-- 146 (224)
Q Consensus 80 ~~W~~-~ssL~~v~~qF~~~Le~lq~FWd~Lde----------ID~~~wVLEP~~Ptrs~t~RRIaLg~~vsl~ieVd-- 146 (224)
..|+. ..+|...+..|.+-|.+.+.||..|-+ -|..|| +-.. -.=+++-.|+
T Consensus 369 ~~~~~~~~~L~~~~~e~~~kL~~~k~F~~~Lp~~lC~~~~~a~~e~~CW-----NG~~----------~grY~~~vv~~G 433 (563)
T KOG3821|consen 369 RPTTAAGTTLDRLVTEFKEKLKLSKSFWSSLPDTLCSMAAGASNEERCW-----NGTG----------VGRYLQPVVGNG 433 (563)
T ss_pred CCcCCCcchHHHHHHHHHHHHHHHHHHHHhhhHHHhcccccccCCCccc-----CCcc----------cccccHhhhCCc
Confidence 35543 578999999999999999999998843 345555 1111 1224445555
Q ss_pred CCCCCCCCceeeeCCchhhHHHHHHH
Q 027371 147 IDDPSSLPECRFMGSDPMVNSLRKTW 172 (224)
Q Consensus 147 P~~P~~lPe~~FlG~~~~V~~Lr~~l 172 (224)
+.++..-||+.+=|++..++..++++
T Consensus 434 ~~nQ~nNPEv~vd~~~p~~~~~~~~l 459 (563)
T KOG3821|consen 434 LANQFNNPEVKVDASKPDGNIIEQIL 459 (563)
T ss_pred cccccCCCcCCcCCcCCchHHHHHHH
Confidence 67888999988887777766555444
No 27
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=36.72 E-value=70 Score=24.70 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhh-----ccceeecCCCCCCCc
Q 027371 90 DLLQQFREHLEKLQEIWNILDEID-----KSLWVIDLKNPSRAN 128 (224)
Q Consensus 90 ~v~~qF~~~Le~lq~FWd~LdeID-----~~~wVLEP~~Ptrs~ 128 (224)
+...+|...|+..=.|.++|+++| -.+.+.+-.++.|.+
T Consensus 22 ee~e~~~~~l~~Il~~veql~evD~~~vep~~~~~~~~~~lReD 65 (96)
T COG0721 22 EELEKFATQLEDILGYVEQLNEVDTEGVEPTTHPLEVSNVLRED 65 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccCC
Confidence 677889999999999999999999 344444444444443
No 28
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=34.45 E-value=1.1e+02 Score=24.35 Aligned_cols=52 Identities=23% Similarity=0.473 Sum_probs=37.4
Q ss_pred CCCEEEEEEEecCCCCCCCCceeecCCCce-----------------ec---ccCccCcHHHHHHHHHHHHH
Q 027371 49 KGRVHCMEIQLDKNYPRSPPSISADVPYIF-----------------NL---KWSRKSRLKDLLQQFREHLE 100 (224)
Q Consensus 49 ~gR~H~l~v~l~~~yP~~~P~~~~dlP~~f-----------------~~---~W~~~ssL~~v~~qF~~~Le 100 (224)
.|+.-.|+|.++..||..||.+...-|..+ +. .|.|...+.++++|-...|+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHH
Confidence 788999999999999999998876544321 11 34455567777777776664
No 29
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=34.36 E-value=60 Score=30.78 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=41.0
Q ss_pred cceeecCCCCCCCcee-----E---EEEeCCceEEEEEE--cCCCCCCCCceeeeCCchhhHHHHHHHhhcccCCCCCC
Q 027371 115 SLWVIDLKNPSRANVC-----R---QINLGYNCIIMLSI--HIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRCASSS 183 (224)
Q Consensus 115 ~~wVLEP~~Ptrs~t~-----R---RIaLg~~vsl~ieV--dP~~P~~lPe~~FlG~~~~V~~Lr~~l~~n~~~Wd~~~ 183 (224)
-+||.+.....++.+- | .|..+.. +|+-+| |+.+|.+.|++-| |.|..-.+ ....-.++.+||.+.
T Consensus 34 ~~~v~~~~sg~~~~~~~~~~DRF~l~IPy~~~-~l~W~viFd~~~p~~pPDfiF-~eD~~F~p-d~s~l~~L~~Wd~~d 109 (333)
T PF06113_consen 34 CIRVVDLWSGCRSLTPGPNCDRFKLLIPYCGE-YLKWDVIFDAQYPEFPPDFIF-GEDDNFLP-DPSKLPSLVNWDPSD 109 (333)
T ss_pred ceeeeecccccCcCCCCCccceEEEEeeccCC-EEEEEEEEcCCCCCCCCCEEe-CCCcCcCC-ChhhcchhhcCCCCC
Confidence 3788888875554222 2 4444444 666666 9999999999999 54432111 111125678999776
No 30
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=33.14 E-value=27 Score=25.57 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=9.5
Q ss_pred HHHHHhHHhhhc
Q 027371 103 QEIWNILDEIDK 114 (224)
Q Consensus 103 q~FWd~LdeID~ 114 (224)
..||+.|++|=+
T Consensus 20 ~~FW~~L~eiA~ 31 (67)
T PF13467_consen 20 PAFWDALEEIAA 31 (67)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 479999999843
No 31
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=32.88 E-value=53 Score=23.27 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=11.3
Q ss_pred EEEEEeCCCCEEEEEEEe
Q 027371 42 SFRVIDKKGRVHCMEIQL 59 (224)
Q Consensus 42 ~l~~~D~~gR~H~l~v~l 59 (224)
++.+.|.+||.|.++++-
T Consensus 11 rVQlTD~Kgr~~Ti~L~~ 28 (54)
T PF14801_consen 11 RVQLTDPKGRKHTITLEP 28 (54)
T ss_dssp EEEEEETT--EEEEE--T
T ss_pred EEEEccCCCCeeeEEECC
Confidence 456789999999988763
No 32
>PF15225 IL32: Interleukin 32
Probab=32.17 E-value=70 Score=25.08 Aligned_cols=29 Identities=24% Similarity=0.589 Sum_probs=24.3
Q ss_pred ccCc-cCcHHHHHHHHHHHHHHHHHHHHhH
Q 027371 81 KWSR-KSRLKDLLQQFREHLEKLQEIWNIL 109 (224)
Q Consensus 81 ~W~~-~ssL~~v~~qF~~~Le~lq~FWd~L 109 (224)
-|.| .|.-..++.+|+.+|..||..|.-+
T Consensus 32 ~~eP~Esf~dkvmR~FqamlqrLQ~ww~~v 61 (104)
T PF15225_consen 32 VWEPGESFCDKVMRWFQAMLQRLQTWWQAV 61 (104)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777 4678899999999999999999754
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=31.31 E-value=1.1e+02 Score=22.30 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=18.5
Q ss_pred eEEEEEEcCCCCCCCCceeeeCCc
Q 027371 139 CIIMLSIHIDDPSSLPECRFMGSD 162 (224)
Q Consensus 139 vsl~ieVdP~~P~~lPe~~FlG~~ 162 (224)
+.|+|...+..|...|.+.+..+.
T Consensus 43 ~~l~~~~p~~YP~~~P~i~~~~~~ 66 (107)
T smart00591 43 LTLQVKLPENYPDEAPPISLLNSE 66 (107)
T ss_pred EEEEEECCCCCCCCCCCeEEECCC
Confidence 555566678899999999888764
No 34
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=30.10 E-value=52 Score=35.67 Aligned_cols=56 Identities=20% Similarity=0.405 Sum_probs=38.1
Q ss_pred EEEEEEEecCCCCCCCCceeecCC-Ccee----------------------cccCccCcHHHHHHHHHHHHHHHHHHHH
Q 027371 52 VHCMEIQLDKNYPRSPPSISADVP-YIFN----------------------LKWSRKSRLKDLLQQFREHLEKLQEIWN 107 (224)
Q Consensus 52 ~H~l~v~l~~~yP~~~P~~~~dlP-~~f~----------------------~~W~~~ssL~~v~~qF~~~Le~lq~FWd 107 (224)
-.+..+++|..||.+||.|..--- .-|+ -.|+|.||+..|+--||..+--=++||+
T Consensus 899 ~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~n 977 (1101)
T KOG0895|consen 899 LFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFN 977 (1101)
T ss_pred eEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccC
Confidence 357889999999999999873322 1111 1588878887777777777655455554
No 35
>PF07559 FlaE: Flagellar basal body protein FlaE; InterPro: IPR011491 This domain is found in several bacterial FlaE flagellar proteins. These proteins are part of the flagellar basal body rod complex.; GO: 0030694 bacterial-type flagellum basal body, rod; PDB: 2BGY_A 1WLG_B 2BGZ_A 3A69_A.
Probab=29.99 E-value=65 Score=24.87 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=16.8
Q ss_pred eEEEEEEeCCCCEEEEEEEecC
Q 027371 40 FLSFRVIDKKGRVHCMEIQLDK 61 (224)
Q Consensus 40 ~i~l~~~D~~gR~H~l~v~l~~ 61 (224)
.-.+++.|+.|.+|.|++.+..
T Consensus 12 ~ts~~vYDSlG~~h~lt~~f~k 33 (130)
T PF07559_consen 12 STSITVYDSLGNAHTLTVYFTK 33 (130)
T ss_dssp EEEEEEE-TT--EEEEEEEEEE
T ss_pred eeeEEEECCCCCEEEEEEEEEE
Confidence 5678999999999999999876
No 36
>PF10976 DUF2790: Protein of unknown function (DUF2790); InterPro: IPR021245 This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.
Probab=29.12 E-value=87 Score=23.51 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=25.1
Q ss_pred eeeeecCC-----cceEEEEEEeCCCCEEEEEEEecC
Q 027371 30 HLVRLSED-----LKFLSFRVIDKKGRVHCMEIQLDK 61 (224)
Q Consensus 30 kl~~id~~-----ls~i~l~~~D~~gR~H~l~v~l~~ 61 (224)
|+++++.. +-..+++-+|++|+.|.|+-..-.
T Consensus 37 kVis~t~~~~~C~Vvpa~MtY~DS~G~~h~l~Y~~~g 73 (78)
T PF10976_consen 37 KVISVTPPPNVCGVVPARMTYEDSQGELHTLEYRVMG 73 (78)
T ss_pred eeEEecCCCCCCcEEccEEEEECCCCCEEEEEeEeec
Confidence 78888765 445678899999999999876543
No 37
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=27.63 E-value=2.7e+02 Score=21.08 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=39.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhHHhhhccceeecCCCCCCCceeEEEEeCCceEEEEEE
Q 027371 86 SRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI 145 (224)
Q Consensus 86 ssL~~v~~qF~~~Le~lq~FWd~LdeID~~~wVLEP~~Ptrs~t~RRIaLg~~vsl~ieV 145 (224)
..|..-+.++...+++++..=+.++.+.+ .....--.|.+|.++++..+|
T Consensus 6 ~~l~~~~~~l~~~~~e~~~~~~~l~~l~~----------~~~~~~~lvplg~~~~v~g~i 55 (120)
T PF02996_consen 6 ENLQQQIEQLEEQIEEYEEAKETLEELKK----------EKKEHEILVPLGSGVFVPGKI 55 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT------------TT-EEEEEECTTEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cCCCceeeecCCCCeEEEEEe
Confidence 35777788888889999999999999887 334566679999999999999
No 38
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=25.98 E-value=2.7e+02 Score=21.60 Aligned_cols=22 Identities=5% Similarity=0.067 Sum_probs=18.1
Q ss_pred CceeEEEEeCCceEEEEEEcCC
Q 027371 127 ANVCRQINLGYNCIIMLSIHID 148 (224)
Q Consensus 127 s~t~RRIaLg~~vsl~ieVdP~ 148 (224)
......+.||..+++.-+|.+.
T Consensus 46 ~~~~~lv~lg~~~~v~~~v~~~ 67 (126)
T TIGR00293 46 EGKETLVPVGAGSFVKAKVKDT 67 (126)
T ss_pred CCCeEEEEcCCCeEEEEEeCCC
Confidence 4577889999999999999543
No 39
>COG1264 PtsG Phosphotransferase system IIB components [Carbohydrate transport and metabolism]
Probab=25.76 E-value=31 Score=26.21 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=24.1
Q ss_pred HHHhc-cceeeeecCCcceEEEEEEeCC
Q 027371 23 IEEVG-WEHLVRLSEDLKFLSFRVIDKK 49 (224)
Q Consensus 23 ie~iG-W~kl~~id~~ls~i~l~~~D~~ 49 (224)
|+.+| .+.+++++...+.|++.+.|.+
T Consensus 8 l~~lGG~eNI~~~~~C~TRLR~~v~D~s 35 (88)
T COG1264 8 LEALGGKENIVSVDHCATRLRVTVKDES 35 (88)
T ss_pred HHHcCCHHHHhhhhcCcceEEEEEcChh
Confidence 56677 8999999999999999999984
No 40
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) has, currently, only been found in Bacteroides fragilis and in Butyrivibrio fibrisolvens. It is a hexamer of identical chains. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006542 glutamine biosynthetic process, 0006807 nitrogen compound metabolic process; PDB: 3NG0_A 2D3A_A 2D3C_E 2D3B_H 1LGR_C 2GLS_I 1F1H_B 1FPY_C 2LGS_D 1F52_A ....
Probab=24.11 E-value=1.3e+02 Score=22.22 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=19.9
Q ss_pred CcceEEEEEEeCCCCEEEEEEEecC
Q 027371 37 DLKFLSFRVIDKKGRVHCMEIQLDK 61 (224)
Q Consensus 37 ~ls~i~l~~~D~~gR~H~l~v~l~~ 61 (224)
+++.|.+...|..||.|.+++....
T Consensus 1 ~V~~v~~~f~D~~G~~~~~~i~~~~ 25 (84)
T PF03951_consen 1 NVKFVDLQFTDLFGRLKHVTIPASE 25 (84)
T ss_dssp T-EEEEEEEE-TTSSEEEEEEEGCC
T ss_pred CeEEEEEEEEcCCCCcceEEEEHHH
Confidence 4678999999999999988887654
No 41
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=23.03 E-value=1.6e+02 Score=26.38 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=20.9
Q ss_pred EEEEEEEecCCCCCCCCceeecCCCc
Q 027371 52 VHCMEIQLDKNYPRSPPSISADVPYI 77 (224)
Q Consensus 52 ~H~l~v~l~~~yP~~~P~~~~dlP~~ 77 (224)
.-+++++++.+||-++|.+.+.-|..
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~~~~~ 75 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAFENEN 75 (215)
T ss_pred cEEEEEEccCCCCCCCcceecccccc
Confidence 66789999999999999995555543
No 42
>PF00367 PTS_EIIB: phosphotransferase system, EIIB; InterPro: IPR018113 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to enzyme-I (EI) of PTS which in turn transfers it to a phosphoryl carrier protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease which consists of at least three structurally distinct domains (IIA, IIB, and IIC) [] which can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA) carries the first permease-specific phoshorylation site, a histidine, which is phosphorylated by phospho-HPr. The second domain (IIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the permease. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate in a process catalyzed by the IIC domain; this process is coupled to the transmembrane transport of the sugar. This entry covers the phosphorylation site of EIIB domains. ; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity; PDB: 3IPJ_B 3BP3_A 1O2F_B 3BP8_C 1IBA_A.
Probab=21.75 E-value=67 Score=20.41 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=22.1
Q ss_pred HHHhc-cceeeeecCCcceEEEEEEeCC
Q 027371 23 IEEVG-WEHLVRLSEDLKFLSFRVIDKK 49 (224)
Q Consensus 23 ie~iG-W~kl~~id~~ls~i~l~~~D~~ 49 (224)
|+.+| -+++..++...+.++|++.|.+
T Consensus 5 l~~lGG~~NI~~v~~C~TRLR~~v~d~~ 32 (35)
T PF00367_consen 5 LEALGGKENIKSVTNCATRLRFTVKDDS 32 (35)
T ss_dssp HHHCTTCCCEEEEEE-SSEEEEEESTGG
T ss_pred HHHhCCHHHHHHHhcCcceEEEEecChh
Confidence 56677 7899999999999999998864
No 43
>KOG2553 consensus Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=21.37 E-value=53 Score=32.00 Aligned_cols=50 Identities=16% Similarity=0.089 Sum_probs=39.7
Q ss_pred ecCCCCCCCceeE----EEEeCCceEEEEEEcCCCCCCCCceeeeCCchhhHHHHHHHhhcccCCCCC
Q 027371 119 IDLKNPSRANVCR----QINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRCASS 182 (224)
Q Consensus 119 LEP~~Ptrs~t~R----RIaLg~~vsl~ieVdP~~P~~lPe~~FlG~~~~V~~Lr~~l~~n~~~Wd~~ 182 (224)
.+|.+-..+...| .=|+||-|||++.+++ +..|+.|.+.|..++.-|+-.
T Consensus 82 ~dpkk~~~~raARTDKGVhA~~nviSlK~~~~~--------------~~lv~~lN~~Lp~~IRv~~v~ 135 (416)
T KOG2553|consen 82 GDPKKIGFARAARTDKGVHAAGNVISLKLELDD--------------PELVEKLNEILPEQIRVWGVK 135 (416)
T ss_pred cChHHhhhHHhhccccchhhhhheeEEEEeeCc--------------HHHHHHHhhhCCcceEEEEEE
Confidence 3566666666666 6789999999999987 567888899999899989843
No 44
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=20.95 E-value=2.9e+02 Score=20.25 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=17.5
Q ss_pred cceEEEEEEeCCCCEEEEEEEe
Q 027371 38 LKFLSFRVIDKKGRVHCMEIQL 59 (224)
Q Consensus 38 ls~i~l~~~D~~gR~H~l~v~l 59 (224)
-.+|.+++.+..|+.+.++|+.
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~ 30 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKR 30 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcC
Confidence 3578888998889988877754
No 45
>cd00212 PTS_IIB_glc PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Probab=20.72 E-value=69 Score=23.39 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=23.6
Q ss_pred HHHhc-cceeeeecCCcceEEEEEEeCC
Q 027371 23 IEEVG-WEHLVRLSEDLKFLSFRVIDKK 49 (224)
Q Consensus 23 ie~iG-W~kl~~id~~ls~i~l~~~D~~ 49 (224)
|+.+| .+++.+++...+.|++++.|.+
T Consensus 8 i~~lGG~~NI~~v~~c~TRLRv~l~d~~ 35 (78)
T cd00212 8 LEALGGKENIVSLDHCATRLRLTVKDES 35 (78)
T ss_pred HHHhCCHHHhccccccccEEEEEEeCch
Confidence 46676 8999999999999999999984
No 46
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=20.28 E-value=2.9e+02 Score=22.49 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=33.7
Q ss_pred eeeeecCCcceEEEEEEeCCCCEEEE----EEEecCCCCCCCCceeecCCCceecccCccCcHHHHHHHHHHHHHHH
Q 027371 30 HLVRLSEDLKFLSFRVIDKKGRVHCM----EIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKL 102 (224)
Q Consensus 30 kl~~id~~ls~i~l~~~D~~gR~H~l----~v~l~~~yP~~~P~~~~dlP~~f~~~W~~~ssL~~v~~qF~~~Le~l 102 (224)
++.-||..++..=+-+.+..+++..+ .|+.+.+- + ...+|..+++++.+.++.+
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~~~g~i~t~~~~-----------~--------~~~rl~~I~~~l~~~i~~~ 58 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRTSSDA-----------P--------LPSRLKTIYDGLNEVIDQF 58 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEEEeeEEECCCCC-----------C--------HHHHHHHHHHHHHHHHHHh
Confidence 35678888888888888766655322 34433211 1 1345777888888877755
Done!