BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027372
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I6K|A Chain A, Crystal Structure Of Human Type I Ipp Isomerase Complexed
With A Substrate Analog
pdb|2I6K|B Chain B, Crystal Structure Of Human Type I Ipp Isomerase Complexed
With A Substrate Analog
Length = 235
Score = 166 bits (421), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 88/142 (61%), Positives = 103/142 (72%), Gaps = 2/142 (1%)
Query: 78 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
+D Q +L+ E CIL+DEND +G E K NCHL E IE LLHRAFSVFLFN++ +LL
Sbjct: 17 LDKQQVQLLAE-XCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLL 74
Query: 138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
LQQRS K+TFP +TNTCCSHPL +EL E +ALGVR AAQR+L ELGI E+VP +
Sbjct: 75 LQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPE 134
Query: 198 EFTPLGRILYKAPSDGKWGEHE 219
E L RI YKA SDG WGEHE
Sbjct: 135 EINYLTRIHYKAQSDGIWGEHE 156
>pdb|2DHO|A Chain A, Crystal Structure Of Human Ipp Isomerase I In Space Group
P212121
Length = 235
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/142 (61%), Positives = 103/142 (72%), Gaps = 2/142 (1%)
Query: 78 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
+D Q +L+ E CIL+DEND +G E K NCHL E IE LLHRAFSVFLFN++ +LL
Sbjct: 17 LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLL 74
Query: 138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
LQQRS K+TFP +TNTCCSHPL +EL E +ALGVR AAQR+L ELGI E+VP +
Sbjct: 75 LQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPE 134
Query: 198 EFTPLGRILYKAPSDGKWGEHE 219
E L RI YKA SDG WGEHE
Sbjct: 135 EINYLTRIHYKAQSDGIWGEHE 156
>pdb|2ICJ|A Chain A, The Crystal Structure Of Human Isopentenyl Diphophate
Isomerase
pdb|2ICK|A Chain A, Human Isopentenyl Diphophate Isomerase Complexed With
Substrate Analog
Length = 233
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/142 (61%), Positives = 103/142 (72%), Gaps = 2/142 (1%)
Query: 78 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
+D Q +L+ E CIL+DEND +G E K NCHL E IE LLHRAFSVFLFN++ +LL
Sbjct: 15 LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLL 72
Query: 138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
LQQRS K+TFP +TNTCCSHPL +EL E +ALGVR AAQR+L ELGI E+VP +
Sbjct: 73 LQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPE 132
Query: 198 EFTPLGRILYKAPSDGKWGEHE 219
E L RI YKA SDG WGEHE
Sbjct: 133 EINYLTRIHYKAQSDGIWGEHE 154
>pdb|2PNY|A Chain A, Structure Of Human Isopentenyl-Diphosphate Delta-Isomerase
2
Length = 246
Score = 149 bits (377), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 103/150 (68%), Gaps = 3/150 (2%)
Query: 72 ATTDAGMDAVQRRLM--FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFL 129
+ +D +D V RR + E+ I+VDEND+V+G + K NCHL E IE LLHRAFSV L
Sbjct: 19 SMSDINLDWVDRRQLQRLEEMLIVVDENDKVIGADTKRNCHLNENIEK-GLLHRAFSVVL 77
Query: 130 FNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI 189
FN+K +L+QQRS TKVTFP +T++C SHPLY +EL E++A+GVR AAQR+L ELGI
Sbjct: 78 FNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGI 137
Query: 190 CAEDVPVDEFTPLGRILYKAPSDGKWGEHE 219
E + ++ + +KA SD WGEHE
Sbjct: 138 PGEQISPEDIVFMTIYHHKAKSDRIWGEHE 167
>pdb|3HYQ|A Chain A, Crystal Structure Of Isopentenyl-Diphosphate
Delta-Isomerase From Salmonella Entericase
Length = 184
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 14/107 (13%)
Query: 88 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVT 147
E+ +L+DE D+ G KY H + LH AFS +LFN +LL+ +RS +K
Sbjct: 6 EEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLVTRRSLSKKA 60
Query: 148 FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 194
+P VWTN+ C HP ++ E EE A R+ ELG+ D+
Sbjct: 61 WPGVWTNSVCGHP--QQGETTEE-------AIIRRCRFELGVEITDL 98
>pdb|1X83|A Chain A, Y104f Ipp Isomerase Reacted With (S)-Bromohydrine Of Ipp
pdb|1X83|B Chain B, Y104f Ipp Isomerase Reacted With (S)-Bromohydrine Of Ipp
Length = 189
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
+P VWTN+ C HP ES +A R+ ELG+ E P + P R
Sbjct: 56 KAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRF 104
Query: 206 LYKAPS 211
PS
Sbjct: 105 RATDPS 110
>pdb|2G73|A Chain A, Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp
pdb|2G73|B Chain B, Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp
pdb|2G74|A Chain A, Y104f Mutant Of Type 1 Isopentenylpyrophosphate-
Dimethylallylpyrophosphate Isomerase
pdb|2G74|B Chain B, Y104f Mutant Of Type 1 Isopentenylpyrophosphate-
Dimethylallylpyrophosphate Isomerase
pdb|2B2K|A Chain A, Structure Of Y104f Idi-1 Mutant In Complex With Eipp
pdb|2B2K|B Chain B, Structure Of Y104f Idi-1 Mutant In Complex With Eipp
Length = 183
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
+P VWTN+ C HP ES +A R+ ELG+ E P + P R
Sbjct: 56 KAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRF 104
Query: 206 LYKAPS 211
PS
Sbjct: 105 RATDPS 110
>pdb|1R67|A Chain A, Y104a Mutant Of E.coli Ipp Isomerase
Length = 190
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
+P VWTN+ C HP ES +A R+ ELG+ E P + P R
Sbjct: 56 KAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRA 104
Query: 206 LYKAPS 211
PS
Sbjct: 105 RATDPS 110
>pdb|1X84|A Chain A, Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of Ipp
pdb|1X84|B Chain B, Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of Ipp
Length = 189
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
+P VWTN+ C HP ES +A R+ ELG+ E P + P R
Sbjct: 56 KAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRY 104
Query: 206 LYKAPS 211
PS
Sbjct: 105 RATDPS 110
>pdb|1NFS|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-dimethylallylpyrophosphate
Isomerase: Complex With Nipp
pdb|1NFS|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-dimethylallylpyrophosphate
Isomerase: Complex With Nipp
pdb|1NFZ|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With Eipp
pdb|1NFZ|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With Eipp
pdb|1PPV|A Chain A, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPV|B Chain B, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPW|A Chain A, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPW|B Chain B, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PVF|A Chain A, E.coli Ipp Isomerase In Complex With Diphosphate
pdb|1PVF|B Chain B, E.coli Ipp Isomerase In Complex With Diphosphate
pdb|2VNP|A Chain A, Monoclinic Form Of Idi-1
pdb|2VNP|B Chain B, Monoclinic Form Of Idi-1
pdb|2VNQ|A Chain A, Monoclinic Form Of Idi-1
pdb|2VNQ|B Chain B, Monoclinic Form Of Idi-1
Length = 183
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
+P VWTN+ C HP ES +A R+ ELG+ E P + P R
Sbjct: 56 KAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRY 104
Query: 206 LYKAPS 211
PS
Sbjct: 105 RATDPS 110
>pdb|1HZT|A Chain A, Crystal Structure Of Metal-Free Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
Length = 190
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
+P VWTN+ C HP ES +A R+ ELG+ E P + P R
Sbjct: 56 KAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRY 104
Query: 206 LYKAPS 211
PS
Sbjct: 105 RATDPS 110
>pdb|1I9A|A Chain A, Structural Studies Of Cholesterol Biosynthesis: Mevalonate
5-Diphosphate Decarboxylase And Isopentenyl Diphosphate
Isomerase
pdb|1I9A|B Chain B, Structural Studies Of Cholesterol Biosynthesis: Mevalonate
5-Diphosphate Decarboxylase And Isopentenyl Diphosphate
Isomerase
Length = 182
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 89 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 148
+ IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K +
Sbjct: 4 EHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSKKAW 58
Query: 149 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYK 208
P VWTN+ C HP ES +A R+ ELG+ E P + P R
Sbjct: 59 PGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRYRAT 107
Query: 209 APS 211
PS
Sbjct: 108 DPS 110
>pdb|1Q54|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With The Bromohydrine Of Ipp
pdb|1Q54|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With The Bromohydrine Of Ipp
pdb|1OW2|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex Of C67a Mutant With Eipp
pdb|1OW2|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex Of C67a Mutant With Eipp
Length = 183
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
+P VWTN+ HP ES +A R+ ELG+ E P + P R
Sbjct: 56 KAWPGVWTNSVAGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRY 104
Query: 206 LYKAPS 211
PS
Sbjct: 105 RATDPS 110
>pdb|1HX3|A Chain A, Crystal Structure Of E.Coli Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
pdb|1HX3|B Chain B, Crystal Structure Of E.Coli Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
Length = 190
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL++ G KY H + LH AFS +LFN+K +LL+ +R+ +K
Sbjct: 1 MQTEHVILLNAQGVPTGTLEKYAAHTAD-----TRLHLAFSSWLFNAKGQLLVTRRALSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
+P VWTN+ HP ES +A R+ ELG+ E P + P R
Sbjct: 56 KAWPGVWTNSVAGHPQLGESN---------EDAVIRRCRYELGV--EITPPESIYPDFRY 104
Query: 206 LYKAPS 211
PS
Sbjct: 105 RATDPS 110
>pdb|2FKB|A Chain A, Crystal Structure Of A Putative Enzyme (Possible Nudix
Hydrolase) From Escherichia Coli K12
pdb|2FKB|B Chain B, Crystal Structure Of A Putative Enzyme (Possible Nudix
Hydrolase) From Escherichia Coli K12
pdb|2FKB|C Chain C, Crystal Structure Of A Putative Enzyme (Possible Nudix
Hydrolase) From Escherichia Coli K12
Length = 180
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 82 QRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQR 141
QRRL + +V+E + V+ ++ E+ + L HRA + + + ++L+Q+R
Sbjct: 3 QRRLASTEWVDIVNEENEVIAQASR------EQXRAQCLRHRATYIVVHDGXGKILVQRR 56
Query: 142 SGTKVTFP 149
+ TK P
Sbjct: 57 TETKDFLP 64
>pdb|3TTS|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTY|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
Length = 675
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 133 KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQR 181
++ + L++R GT W + SH Y E++ NAL + R
Sbjct: 163 QFRVWLKERYGTLEALNKAWNTSFWSHTFYDWDEIVAPNALSEEWSGNR 211
>pdb|3DUZ|A Chain A, Crystal Structure Of The Postfusion Form Of Baculovirus
Fusion Protein Gp64
Length = 487
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 68 TMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESL--------- 118
T GD T + +Q LM+E++ + ++ + + H NK N L + I S+
Sbjct: 272 TEGDTATKGDLMHIQEELMYENDLLKMNI-ELMHAHINKLNNMLHDLIVSVAKVDERLIG 330
Query: 119 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELI 168
NL++ + S + LL+ T P T+ C ++ +Y+E +
Sbjct: 331 NLMNNSVSSTFLSDDTFLLM------PCTNPPAHTSNCYNNSIYKEGRWV 374
>pdb|1LF6|A Chain A, Crystal Structure Of Bacterial Glucoamylase
pdb|1LF6|B Chain B, Crystal Structure Of Bacterial Glucoamylase
pdb|1LF9|A Chain A, Crystal Structure Of Bacterial Glucoamylase Complexed With
Acarbose
pdb|1LF9|B Chain B, Crystal Structure Of Bacterial Glucoamylase Complexed With
Acarbose
Length = 684
Score = 26.9 bits (58), Expect = 8.2, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 161 LYRESELIEEN-----ALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKW 215
+Y + E+++ + LGV++A K+L+ L + + VD TP G Y+ DG +
Sbjct: 525 VYDQKEIVDPSFLELVRLGVKSADDPKILNTLKVVDSTIKVD--TPKGPSWYRYNHDG-Y 581
Query: 216 GE 217
GE
Sbjct: 582 GE 583
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,133,187
Number of Sequences: 62578
Number of extensions: 186729
Number of successful extensions: 368
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 19
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)