BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027372
(224 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48965|IDI2_CAMAC Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata
GN=IPI2 PE=2 SV=1
Length = 309
Score = 308 bits (790), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 149/195 (76%), Positives = 160/195 (82%), Gaps = 12/195 (6%)
Query: 30 LFFSSSHFAPRVSSIRRPLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFED 89
+F SSSH + RVSS SS ++ S MGD TDAGMDAVQRRLMFED
Sbjct: 48 VFCSSSHLSVRVSSYH------------SSVAAKATTSAMGDTATDAGMDAVQRRLMFED 95
Query: 90 ECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFP 149
ECILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFP
Sbjct: 96 ECILVDENDHVVGHDTKYNCHLMEKIESDNLLHRAFSVFLFNSKYELLLQQRSATKVTFP 155
Query: 150 LVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKA 209
LVWTNTCCSHP YRESEL++ENALGVRNAAQRKLLDELGI AEDVPVD+F PLGR+LYKA
Sbjct: 156 LVWTNTCCSHPRYRESELVDENALGVRNAAQRKLLDELGIPAEDVPVDQFIPLGRMLYKA 215
Query: 210 PSDGKWGEHERNVFI 224
PSDGKWGEHE + +
Sbjct: 216 PSDGKWGEHELDYLL 230
>sp|Q38929|IDI1_ARATH Isopentenyl-diphosphate Delta-isomerase I, chloroplastic
OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=3
Length = 291
Score = 306 bits (785), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 149/186 (80%), Positives = 159/186 (85%), Gaps = 7/186 (3%)
Query: 39 PRVSSIRRPLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDEND 98
PR+S IR P A R+ S + A+ TM D + DAGMDAVQRRLMFEDECILVDEND
Sbjct: 35 PRLSPIRSP-----APRTQLSVRAFSAV-TMTD-SNDAGMDAVQRRLMFEDECILVDEND 87
Query: 99 RVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCS 158
RVVGH+ KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCS
Sbjct: 88 RVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTFPLVWTNTCCS 147
Query: 159 HPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEH 218
HPLYRESELIEEN LGVRNAAQRKL DELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEH
Sbjct: 148 HPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEH 207
Query: 219 ERNVFI 224
E + +
Sbjct: 208 EVDYLL 213
>sp|O48964|IDI1_CAMAC Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata
GN=IPI1 PE=2 SV=1
Length = 235
Score = 299 bits (765), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 138/156 (88%), Positives = 145/156 (92%)
Query: 69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
MGDA TDAGMDAVQ+RLMFED+CILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVF
Sbjct: 1 MGDAATDAGMDAVQKRLMFEDKCILVDENDNVVGHDTKYNCHLMEKIESENLLHRAFSVF 60
Query: 129 LFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 188
LFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+ENALG RNAAQRKLLDELG
Sbjct: 61 LFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIKENALGARNAAQRKLLDELG 120
Query: 189 ICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224
I AEDVPVD+F PLGRILYKAPSDGKWGEHE + +
Sbjct: 121 IPAEDVPVDQFIPLGRILYKAPSDGKWGEHELDYLL 156
>sp|Q42553|IDI2_ARATH Isopentenyl-diphosphate Delta-isomerase II, chloroplastic
OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1
Length = 284
Score = 296 bits (758), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 145/180 (80%), Positives = 154/180 (85%), Gaps = 5/180 (2%)
Query: 46 RPLSLRGASRSSSSSSSARAIS-TMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHE 104
RPLS S S + RA S T T DAGMDAVQRRLMFEDECILVDE DRVVGH+
Sbjct: 31 RPLS----SISPRKLPNFRAFSGTAMTDTKDAGMDAVQRRLMFEDECILVDETDRVVGHD 86
Query: 105 NKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRE 164
+KYNCHLME IE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRE
Sbjct: 87 SKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTFPLVWTNTCCSHPLYRE 146
Query: 165 SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224
SELI++NALGVRNAAQRKLLDELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHE + +
Sbjct: 147 SELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHELDYLL 206
>sp|Q39472|IDI1_CLABR Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri
GN=IPI1 PE=2 SV=2
Length = 287
Score = 296 bits (758), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 142/178 (79%), Positives = 155/178 (87%), Gaps = 3/178 (1%)
Query: 47 PLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENK 106
P+SL R S+ + + +TMG+ DAGMDAVQRRLMFEDECILVDEND+VVGHE+K
Sbjct: 35 PISL--TQRFSAKLTFSSQATTMGE-VVDAGMDAVQRRLMFEDECILVDENDKVVGHESK 91
Query: 107 YNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE 166
YNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESE
Sbjct: 92 YNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESE 151
Query: 167 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224
LI+EN LGVRNAAQRKLLDELGI AED+PVD+F PL RILYKAPSDGKWGEHE + +
Sbjct: 152 LIDENCLGVRNAAQRKLLDELGIPAEDLPVDQFIPLSRILYKAPSDGKWGEHELDYLL 209
>sp|Q39471|IDI2_CLABR Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri
GN=IPI2 PE=3 SV=2
Length = 286
Score = 295 bits (755), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 147/188 (78%), Positives = 159/188 (84%), Gaps = 11/188 (5%)
Query: 40 RVSSIRRPLSLRGASRSSSSSSSARAIST---MGDATTDAGMDAVQRRLMFEDECILVDE 96
R S I PLSLR S S R+I+T MG+A DAGMDAVQRRLMF+DECILVDE
Sbjct: 29 RSSRIAAPLSLR-------VSLSTRSIATSIAMGEAA-DAGMDAVQRRLMFDDECILVDE 80
Query: 97 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTC 156
DRVVGHE+KYNCH+ EKIES N+LHRAFSVFLFNSK+ELLLQQRS TKVTFPLVWTNTC
Sbjct: 81 VDRVVGHESKYNCHMWEKIESGNMLHRAFSVFLFNSKFELLLQQRSATKVTFPLVWTNTC 140
Query: 157 CSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG 216
CSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTPL R+LYKAPSDGKWG
Sbjct: 141 CSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPLSRMLYKAPSDGKWG 200
Query: 217 EHERNVFI 224
EHE + +
Sbjct: 201 EHELDYLL 208
>sp|Q39664|IDI2_CLAXA Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana
GN=IPI2 PE=3 SV=1
Length = 290
Score = 294 bits (752), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 150/210 (71%), Positives = 166/210 (79%), Gaps = 8/210 (3%)
Query: 22 SSSFSKSRLFFSSSHFAPRVSSIRRPLSLRG----ASRSSSSSSSARAIST---MGDATT 74
+S K RLF S + R I P LR A S +S S R+I+T MG+A
Sbjct: 4 TSRLYKPRLFSLPSQHSFRALPILSP-PLRSSCIPAPLSVRASLSTRSIATSIAMGEAAA 62
Query: 75 DAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKY 134
DAGMDAVQRRLMF+DECILVDE D VVGHE+KYNCHL EKIES N+LHRAF+VFLFNSK+
Sbjct: 63 DAGMDAVQRRLMFDDECILVDEVDCVVGHESKYNCHLWEKIESGNMLHRAFTVFLFNSKF 122
Query: 135 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 194
ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDV
Sbjct: 123 ELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDV 182
Query: 195 PVDEFTPLGRILYKAPSDGKWGEHERNVFI 224
PVDEFTP+ R+LYKAPSDGKWGEHE + +
Sbjct: 183 PVDEFTPVSRMLYKAPSDGKWGEHELDYLL 212
>sp|Q1LZ95|IDI1_BOVIN Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1
PE=2 SV=2
Length = 227
Score = 170 bits (430), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 93/151 (61%), Positives = 108/151 (71%), Gaps = 3/151 (1%)
Query: 69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
M + +TD +D Q +LM E CILVDENDR +G E K NCHL E IE LLHRAFSVF
Sbjct: 1 MPEVSTD-DLDERQVQLMAE-MCILVDENDRRIGAETKKNCHLNENIER-GLLHRAFSVF 57
Query: 129 LFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 188
LFN++ +LLLQQRS K+TFP +TNTCCSHPL SEL E +A+GVR AAQR+L ELG
Sbjct: 58 LFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPSELEENDAIGVRRAAQRRLKAELG 117
Query: 189 ICAEDVPVDEFTPLGRILYKAPSDGKWGEHE 219
I E+VP +E L RI YKA SD WGEHE
Sbjct: 118 IPMEEVPPEEINYLTRIHYKAQSDSIWGEHE 148
>sp|Q4R4W5|IDI1_MACFA Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis
GN=IDI1 PE=2 SV=2
Length = 227
Score = 167 bits (423), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/151 (60%), Positives = 106/151 (70%), Gaps = 3/151 (1%)
Query: 69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
M + TD +D Q +L+ E CIL+DEND +G E K NCHL E IE LLHRAFSVF
Sbjct: 1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVF 57
Query: 129 LFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 188
LFN++ +LLLQQRS K+TFP +TNTCCSHPL EL E +ALGVR AAQR+L ELG
Sbjct: 58 LFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELG 117
Query: 189 ICAEDVPVDEFTPLGRILYKAPSDGKWGEHE 219
I E+VP +E L RI YKA SDG WGEHE
Sbjct: 118 IPLEEVPPEEINYLTRIHYKAQSDGIWGEHE 148
>sp|Q13907|IDI1_HUMAN Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1
PE=1 SV=2
Length = 227
Score = 167 bits (423), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/142 (61%), Positives = 103/142 (72%), Gaps = 2/142 (1%)
Query: 78 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
+D Q +L+ E CIL+DEND +G E K NCHL E IE LLHRAFSVFLFN++ +LL
Sbjct: 9 LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLL 66
Query: 138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
LQQRS K+TFP +TNTCCSHPL +EL E +ALGVR AAQR+L ELGI E+VP +
Sbjct: 67 LQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPE 126
Query: 198 EFTPLGRILYKAPSDGKWGEHE 219
E L RI YKA SDG WGEHE
Sbjct: 127 EINYLTRIHYKAQSDGIWGEHE 148
>sp|Q5R8R6|IDI1_PONAB Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1
PE=2 SV=2
Length = 227
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/151 (59%), Positives = 105/151 (69%), Gaps = 3/151 (1%)
Query: 69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
M + TD +D Q +L+ E CIL+DEND +G E K NCHL E IE LLHRAFSVF
Sbjct: 1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVF 57
Query: 129 LFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 188
LFN++ +LLLQQRS K+T P +TNTCCSHPL EL E +ALGVR AAQR+L ELG
Sbjct: 58 LFNTENKLLLQQRSDAKITLPGCFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELG 117
Query: 189 ICAEDVPVDEFTPLGRILYKAPSDGKWGEHE 219
I E+VP +E L RI YKA SDG WGEHE
Sbjct: 118 IPLEEVPPEEINYLTRIHYKAQSDGIWGEHE 148
>sp|P58044|IDI1_MOUSE Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1
PE=2 SV=1
Length = 227
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/142 (57%), Positives = 102/142 (71%), Gaps = 2/142 (1%)
Query: 78 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
+D Q +L+ E CIL+DEND +G + K NCHL E I+ LLHRAFSVFLFN++ +LL
Sbjct: 9 LDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLL 66
Query: 138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
LQQRS K+TFP +TN+CCSHPL EL E NA+GV+ AA+R+L ELGI E+V ++
Sbjct: 67 LQQRSDAKITFPGCFTNSCCSHPLSNPGELEENNAIGVKRAAKRRLKAELGIPLEEVDLN 126
Query: 198 EFTPLGRILYKAPSDGKWGEHE 219
E L RI YKA SDG WGEHE
Sbjct: 127 EMDYLTRIYYKAQSDGIWGEHE 148
>sp|O35760|IDI1_RAT Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus
GN=Idi1 PE=2 SV=2
Length = 227
Score = 158 bits (399), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 103/144 (71%), Gaps = 2/144 (1%)
Query: 76 AGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYE 135
+ +D Q +L+ E CIL+DEND +G + K NCHL E I+ L+HRAFSVFLFN++ +
Sbjct: 7 SNLDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLIHRAFSVFLFNTENK 64
Query: 136 LLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP 195
LLLQQRS K+TFP +TN+CCSHPL EL E +A+GV+ AAQR+L ELGI E+V
Sbjct: 65 LLLQQRSDAKITFPGCFTNSCCSHPLNNPGELEENDAMGVKRAAQRRLKAELGIPLEEVD 124
Query: 196 VDEFTPLGRILYKAPSDGKWGEHE 219
++E L RI YKA SDG WGEHE
Sbjct: 125 LNEMNYLTRIYYKAQSDGIWGEHE 148
>sp|O35586|IDI1_MESAU Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus
GN=IDI1 PE=2 SV=1
Length = 227
Score = 157 bits (396), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 82/142 (57%), Positives = 101/142 (71%), Gaps = 2/142 (1%)
Query: 78 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
+D Q +L+ E CIL+DEND +G + K NCHL E I+ LLHRAFSVFLFN++ +LL
Sbjct: 9 LDEQQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLL 66
Query: 138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
LQQRS K+TFP +TN+CCSHPL EL E +A+GV+ AAQR+L ELGI E+V +
Sbjct: 67 LQQRSDAKITFPGCFTNSCCSHPLSNPGELEENDAIGVKRAAQRRLKAELGIPLEEVDPN 126
Query: 198 EFTPLGRILYKAPSDGKWGEHE 219
E L RI YKA SDG WGEHE
Sbjct: 127 EMHYLTRIYYKAQSDGIWGEHE 148
>sp|O42641|IDI1_PHARH Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI
PE=3 SV=1
Length = 251
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/143 (57%), Positives = 96/143 (67%), Gaps = 3/143 (2%)
Query: 79 DAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESL-NLLHRAFSVFLFN-SKYEL 136
D Q RLM E+ CILV+ +D G +K CHLM I + +LLHRAFSVFLF S L
Sbjct: 23 DEEQVRLM-EERCILVNPDDVAYGEASKKTCHLMSNINAPKDLLHRAFSVFLFRPSDGAL 81
Query: 137 LLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV 196
LLQ+R+ K+TFP +WTNTCCSHPL + E+ EEN +GVR AA RKL ELG+ P
Sbjct: 82 LLQRRADEKITFPGMWTNTCCSHPLSIKGEVKEENQIGVRRAASRKLEHELGVPTSSTPP 141
Query: 197 DEFTPLGRILYKAPSDGKWGEHE 219
D FT L RI Y APSDG WGEHE
Sbjct: 142 DSFTYLTRIHYLAPSDGLWGEHE 164
>sp|Q10132|IDI1_SCHPO Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=idi1 PE=2 SV=2
Length = 229
Score = 150 bits (380), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 98/154 (63%), Gaps = 5/154 (3%)
Query: 69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF 128
M D Q RLM E+ CI+VDEND + + K CHLME I LLHRAFS+F
Sbjct: 3 MSSQQEKKDYDEEQLRLM-EEVCIVVDENDVPLRYGTKKECHLMENINK-GLLHRAFSMF 60
Query: 129 LFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE---LIEENALGVRNAAQRKLLD 185
+F+ + LLLQQR+ K+TFP +WTNTCCSHPL E + E GV+NAAQRKL
Sbjct: 61 IFDEQNRLLLQQRAEEKITFPSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFH 120
Query: 186 ELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHE 219
ELGI A+ +P D+F L RI Y APS G WGEHE
Sbjct: 121 ELGIQAKYIPKDKFQFLTRIHYLAPSTGAWGEHE 154
>sp|Q9BXS1|IDI2_HUMAN Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo sapiens GN=IDI2
PE=1 SV=1
Length = 227
Score = 150 bits (378), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 102/148 (68%), Gaps = 3/148 (2%)
Query: 74 TDAGMDAVQRRLM--FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFN 131
+D +D V RR + E+ I+VDEND+V+G + K NCHL E IE LLHRAFSV LFN
Sbjct: 2 SDINLDWVDRRQLQRLEEMLIVVDENDKVIGADTKRNCHLNENIEK-GLLHRAFSVVLFN 60
Query: 132 SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA 191
+K +L+QQRS TKVTFP +T++C SHPLY +EL E++A+GVR AAQR+L ELGI
Sbjct: 61 TKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPG 120
Query: 192 EDVPVDEFTPLGRILYKAPSDGKWGEHE 219
E + ++ + +KA SD WGEHE
Sbjct: 121 EQISPEDIVFMTIYHHKAKSDRIWGEHE 148
>sp|Q9NH02|IDI_DICDI Isopentenyl-diphosphate Delta-isomerase OS=Dictyostelium discoideum
GN=ipi PE=2 SV=1
Length = 239
Score = 140 bits (354), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 102/146 (69%), Gaps = 5/146 (3%)
Query: 77 GMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYEL 136
G + +Q LM E ECI+VD +D+ + +K HLM I + LLHRAFS+FLFN + +L
Sbjct: 15 GHNEIQIELMKE-ECIVVDNDDKPIRPGSKKETHLMVNINN-GLLHRAFSIFLFNGEGKL 72
Query: 137 LLQQRSGTKVTFPLVWTNTCCSHPLY-RESELIEENALGVRNAAQRKLLDELGICAEDVP 195
LLQQR+ K+TFP WTNT CSHPL+ SEL+EENA GV+ AA+RKL ELG+ + V
Sbjct: 73 LLQQRALEKITFPGYWTNTVCSHPLWIVGSELVEENAQGVKIAAKRKLNHELGVPLDQVN 132
Query: 196 VDEFTPLGRILYKAPS--DGKWGEHE 219
+D+FT + +I YK+ S D +WGEHE
Sbjct: 133 IDDFTFMTKIHYKSESKEDPQWGEHE 158
>sp|P15496|IDI1_YEAST Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=IDI1 PE=1 SV=2
Length = 288
Score = 140 bits (353), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 84/179 (46%), Positives = 107/179 (59%), Gaps = 14/179 (7%)
Query: 47 PLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENK 106
PL R +RSS +S+ T +G D Q +LM E+ CI++D +D +G K
Sbjct: 37 PLQQRPNTRSSETSNDESG------ETCFSGHDEEQIKLMNEN-CIVLDWDDNAIGAGTK 89
Query: 107 YNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE 166
CHLME IE LLHRAFSVF+FN + ELLLQQR+ K+TFP +WTNTCCSHPL + E
Sbjct: 90 KVCHLMENIEK-GLLHRAFSVFIFNEQGELLLQQRATEKITFPDLWTNTCCSHPLCIDDE 148
Query: 167 L-----IEENALGVRNAAQRKLLDELGICAEDVPV-DEFTPLGRILYKAPSDGKWGEHE 219
L +++ G AA RKL ELGI ++ +F L RI Y APS+ WGEHE
Sbjct: 149 LGLKGKLDDKIKGAITAAVRKLDHELGIPEDETKTRGKFHFLNRIHYMAPSNEPWGEHE 207
>sp|Q8BFZ6|IDI2_MOUSE Isopentenyl-diphosphate Delta-isomerase 2 OS=Mus musculus GN=Idi2
PE=2 SV=1
Length = 227
Score = 138 bits (347), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/142 (49%), Positives = 96/142 (67%), Gaps = 2/142 (1%)
Query: 78 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELL 137
+D +Q + + E+ CI++D+ D+++G + K NCHLME I LLHRAFSV LFN K ELL
Sbjct: 9 LDELQLKRL-EEMCIVIDKQDQIIGADTKKNCHLMENINK-GLLHRAFSVVLFNMKNELL 66
Query: 138 LQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197
+QQR+ K TFP +T++C SHPLY EL E++ALGVR AA R+L ELGI + + +
Sbjct: 67 VQQRADAKYTFPGHFTDSCSSHPLYVPEELEEKDALGVRRAALRRLQAELGISQDQISIK 126
Query: 198 EFTPLGRILYKAPSDGKWGEHE 219
+ + R +K SD WGEHE
Sbjct: 127 DIIFMTRKYHKCQSDAIWGEHE 148
>sp|A8GDW2|IDI_SERP5 Isopentenyl-diphosphate Delta-isomerase OS=Serratia proteamaculans
(strain 568) GN=idi PE=3 SV=1
Length = 179
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 70/128 (54%), Gaps = 21/128 (16%)
Query: 92 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 151
ILVD +D +G ++K H LLHRAFS+F+F+S+ LLLQQR+ +K +
Sbjct: 6 ILVDADDNAIGSQSKTRVH------QQGLLHRAFSIFIFDSQGRLLLQQRAFSKYHSAGL 59
Query: 152 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 211
WTN+CC HP + ES L AAQR+L +E+G AE V FT Y+A
Sbjct: 60 WTNSCCGHPRWGESTLA---------AAQRRLQEEMGFSAELQQVSSFT------YQAAV 104
Query: 212 DGKWGEHE 219
G EHE
Sbjct: 105 PGDLIEHE 112
>sp|Q5YYB6|IDI_NOCFA Isopentenyl-diphosphate Delta-isomerase OS=Nocardia farcinica
(strain IFM 10152) GN=idi PE=3 SV=1
Length = 175
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 53/99 (53%), Gaps = 14/99 (14%)
Query: 93 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVW 152
LVDE R VG C + E LHRAFSV LF++ +LLQQR+ K FPL+W
Sbjct: 5 LVDEAGRAVG-----ACPVAEAHRDPGKLHRAFSVLLFDTAGRVLLQQRAAVKTRFPLLW 59
Query: 153 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA 191
NTCC HP ES V AA +L +ELG+ A
Sbjct: 60 ANTCCGHPAPGES---------VEAAAATRLAEELGVAA 89
>sp|Q6D3F5|IDI_ERWCT Isopentenyl-diphosphate Delta-isomerase OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=idi PE=3 SV=1
Length = 179
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 69/131 (52%), Gaps = 23/131 (17%)
Query: 90 ECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFP 149
E +LVDEND+ G K H+ + LHRA +V++FNS+ +LLLQQR+ K
Sbjct: 5 EVVLVDENDKPTGVMEKQEAHVKGE------LHRAITVYIFNSRQQLLLQQRAEEKYHSG 58
Query: 150 LVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI-CAEDVPVDEFTPLGRILYK 208
+W+NTCCSHP E L AA R+L +E+G+ CA TP+ + Y+
Sbjct: 59 GLWSNTCCSHPAPGEETL---------QAAHRRLYEEMGLRCA-------LTPMFTLTYR 102
Query: 209 APSDGKWGEHE 219
D EHE
Sbjct: 103 LQLDNGLIEHE 113
>sp|A9AST0|IDI_BURM1 Isopentenyl-diphosphate Delta-isomerase OS=Burkholderia multivorans
(strain ATCC 17616 / 249) GN=idi PE=3 SV=1
Length = 176
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 21/132 (15%)
Query: 88 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVT 147
E+ ILVD +DR +G K H LLHRAFS+F+F+S LLLQQR+ K
Sbjct: 2 EERLILVDTDDRPIGICEKMRAH------HEGLLHRAFSIFVFDSAGRLLLQQRALNKYH 55
Query: 148 FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILY 207
+W+NTCC HP RE+ + +A +R+L +E+G E PVD ++Y
Sbjct: 56 SGGLWSNTCCGHPRPREA---------LPDAVRRRLGEEMGFACELRPVDA------LVY 100
Query: 208 KAPSDGKWGEHE 219
+A + EHE
Sbjct: 101 RARFENDLIEHE 112
>sp|A1WXH5|IDI_HALHL Isopentenyl-diphosphate Delta-isomerase OS=Halorhodospira halophila
(strain DSM 244 / SL1) GN=idi PE=3 SV=1
Length = 175
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 89 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 148
+ ++VD + VG E K H LH AF VF+FN + ELLLQ+R+ +K F
Sbjct: 2 EHVVIVDPEGQRVGTEEKIRAHA-----DGGTLHLAFCVFVFNPRGELLLQRRADSKYHF 56
Query: 149 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 200
+W+NTCC HP R E GV AA+R+L +E G PV +FT
Sbjct: 57 SGLWSNTCCGHP--RPGE-------GVTEAAERRLGEEFGFVTRLHPVAQFT 99
>sp|Q9X7Q6|IDI_STRCO Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=idi PE=3 SV=1
Length = 197
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 52/97 (53%), Gaps = 14/97 (14%)
Query: 93 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVW 152
LVDEN +G K + H + LHRAFSVFLF+ + LL+QQR+ K P VW
Sbjct: 24 LVDENGVTIGTAEKLSAH-----QPPGRLHRAFSVFLFDERGRLLIQQRALGKYHSPGVW 78
Query: 153 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI 189
+NTCC HP E+ AA R+ +ELG+
Sbjct: 79 SNTCCGHPYPGEAPFA---------AAARRTFEELGV 106
>sp|Q82MJ7|IDI_STRAW Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces avermitilis
(strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804
/ NRRL 8165 / MA-4680) GN=idi PE=3 SV=1
Length = 197
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 51/97 (52%), Gaps = 14/97 (14%)
Query: 93 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVW 152
LVDEN +G K H + LHRAFSVFLF+ + LLLQQR+ K P VW
Sbjct: 24 LVDENGTTIGTAEKLAAH-----QPPGQLHRAFSVFLFDEQGRLLLQQRALGKYHSPGVW 78
Query: 153 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI 189
+NTCC HP E+ AA R+ +ELG+
Sbjct: 79 SNTCCGHPYPGEAPFA---------AAARRTHEELGV 106
>sp|Q5NWG5|IDI2_AROAE Isopentenyl-diphosphate Delta-isomerase 2 OS=Aromatoleum aromaticum
(strain EbN1) GN=idi2 PE=3 SV=1
Length = 189
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 15/106 (14%)
Query: 87 FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKV 146
ED+ ILVDE+D VG K H LHRA S+F+F+S L+LQ+R+ K
Sbjct: 1 MEDQVILVDEHDNKVGFAGKMAAH------QRGALHRAISIFVFDSHSRLMLQRRAAGKY 54
Query: 147 TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192
+W+NTCCSHP EE+A +AA+R+L +E+G+ E
Sbjct: 55 HSGGLWSNTCCSHPRPN-----EESA----DAARRRLREEMGVDCE 91
>sp|B1VTW2|IDI_STRGG Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces griseus
subsp. griseus (strain JCM 4626 / NBRC 13350) GN=idi
PE=3 SV=1
Length = 197
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 52/97 (53%), Gaps = 14/97 (14%)
Query: 93 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVW 152
LVDEN +G K H ++ LHRAFSVFLF+ + LLLQ+R+ K P VW
Sbjct: 24 LVDENGTTIGTAEKLAAH-----QAPGQLHRAFSVFLFDEQGRLLLQRRALGKYHSPGVW 78
Query: 153 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI 189
+NTCC HP E+ AA R+ +ELG+
Sbjct: 79 SNTCCGHPYPGEAPFA---------AAARRTHEELGL 106
>sp|Q7N1V4|IDI1_PHOLL Isopentenyl-diphosphate Delta-isomerase 1 OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=idi1 PE=3
SV=1
Length = 176
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 14/104 (13%)
Query: 92 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 151
+LVDEND VG NK + HL + + LHRAFS F+ NSK E+ +QQR+ +K+ +P
Sbjct: 5 VLVDENDNRVGCINKIDAHL-----NGDHLHRAFSCFIINSKNEVYIQQRAQSKLLWPGY 59
Query: 152 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP 195
W+N+ CSHP E + +A R+ +ELGI + P
Sbjct: 60 WSNSYCSHPRPDEE---------ISHAVMRRAEEELGIVINEEP 94
>sp|Q6LUX5|IDI_PHOPR Isopentenyl-diphosphate Delta-isomerase OS=Photobacterium profundum
GN=idi PE=3 SV=1
Length = 180
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 71/140 (50%), Gaps = 22/140 (15%)
Query: 85 LMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLF---NSKYELLLQQR 141
++ E++ +LVD+ R +G + K H LH AFSV L+ E L+QQR
Sbjct: 1 MIIEEQVVLVDQQGRALGLQEKMQAH------RDGALHLAFSVLLYRETTQGIEFLMQQR 54
Query: 142 SGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 201
+ K +WTNTCCSHP R+ E +E+ L R+L +E+GI V ++
Sbjct: 55 ALGKYHSGGLWTNTCCSHP--RQGETLEQAGL-------RRLTEEMGI----VGLESLDD 101
Query: 202 LGRILYKAPSDGKWGEHERN 221
+ +Y+A D + EHE +
Sbjct: 102 IASFVYRAELDNQLIEHEWD 121
>sp|A4FK76|IDI_SACEN Isopentenyl-diphosphate Delta-isomerase OS=Saccharopolyspora
erythraea (strain NRRL 23338) GN=idi PE=3 SV=1
Length = 194
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 61/106 (57%), Gaps = 14/106 (13%)
Query: 89 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 148
++ +L++++ + +G +K H ++ LH AFS ++FN + +LLL QR+ K T+
Sbjct: 2 EQVVLLNDSGQAIGVTDKATVHHLD-----TPLHLAFSCYVFNGRGQLLLTQRAHEKRTW 56
Query: 149 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 194
P VWTNTCC HP +E+ + A R+L +ELG+ D+
Sbjct: 57 PGVWTNTCCGHPAPQEA---------MPEAITRRLGEELGLTVRDL 93
>sp|Q7N0A6|IDI2_PHOLL Isopentenyl-diphosphate Delta-isomerase 2 OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=idi2 PE=3
SV=1
Length = 177
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 15/97 (15%)
Query: 92 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 151
+LVD++D +G K + H +LHRAFS+F+F++K LLLQ+R+ TK +
Sbjct: 6 VLVDKHDNPIGSAGKADIH------QKGMLHRAFSIFVFDNKGNLLLQKRAATKYHSAGL 59
Query: 152 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 188
WTN+CC HP R E +E AA R+L +E+G
Sbjct: 60 WTNSCCGHP--RVGEALEA-------AAHRRLGEEMG 87
>sp|Q5P011|IDI1_AROAE Isopentenyl-diphosphate Delta-isomerase 1 OS=Aromatoleum aromaticum
(strain EbN1) GN=idi1 PE=3 SV=1
Length = 177
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 88 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVT 147
ED+ ILVDEND +G E K H LHRA S+F+F+S LLLQ+R+ +K
Sbjct: 2 EDQVILVDENDTEIGVEGKMIAH------RSGSLHRAISIFIFDSADRLLLQKRAASKYH 55
Query: 148 FPLVWTNTCCSHP 160
+W+NTCCSHP
Sbjct: 56 SAGLWSNTCCSHP 68
>sp|A1T5G2|IDI_MYCVP Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium
vanbaalenii (strain DSM 7251 / PYR-1) GN=idi PE=3 SV=1
Length = 181
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 14/103 (13%)
Query: 92 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLV 151
+L+D++ R +G K H + LH AFS +LF+ +LL +R+ K TFP +
Sbjct: 11 VLLDDDGRTIGSAPKAQVH-----HASTPLHLAFSCYLFDDAGRVLLTRRAVHKRTFPGI 65
Query: 152 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 194
WTNTCC HP E+ +++A R++ +ELG+ D+
Sbjct: 66 WTNTCCGHPAPGEA---------LQDAVTRRVREELGVGITDL 99
>sp|A9MRI5|IDI_SALAR Isopentenyl-diphosphate Delta-isomerase OS=Salmonella arizonae
(strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=idi PE=3
SV=1
Length = 182
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 19/117 (16%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+ +RS +K
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLVTRRSLSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 202
+P VWTN+ C HP ++ E IEE A R+ ELG V + + TP+
Sbjct: 56 KAWPGVWTNSVCGHP--QQGEAIEE-------AIIRRCRFELG-----VEITDLTPI 98
>sp|B5F9P6|IDI_VIBFM Isopentenyl-diphosphate Delta-isomerase OS=Vibrio fischeri (strain
MJ11) GN=idi PE=3 SV=1
Length = 181
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 68/139 (48%), Gaps = 24/139 (17%)
Query: 91 CILVDENDRVVGHENKYNCHLMEKIES--LNLLHRAFSVFLFNSK---YELLLQQRSGTK 145
+LV+E +G MEK+E+ LLH AFSV L+ E LLQ+R+ K
Sbjct: 5 VVLVNEQGDAIG--------TMEKLEAHEKGLLHLAFSVLLYRETDLGKEFLLQKRAECK 56
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
W+NTCCSHP E+ V A R+L +E+GI V ++F LG
Sbjct: 57 YHSKNKWSNTCCSHPRVNEN---------VEAAGTRRLNEEIGITG--VLPEQFVNLGWF 105
Query: 206 LYKAPSDGKWGEHERNVFI 224
+Y+A + EHE++ +
Sbjct: 106 IYQAELENGLSEHEQDYIL 124
>sp|A6TDP3|IDI_KLEP7 Isopentenyl-diphosphate Delta-isomerase OS=Klebsiella pneumoniae
subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
GN=idi PE=3 SV=1
Length = 184
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M + IL+DE D+ G KY H + LH AFS +LFN + +LL+ +RS K
Sbjct: 1 MAGEHVILLDEQDQPAGMLEKYAAHTFD-----TPLHLAFSCWLFNQQGQLLVTRRSLGK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 194
+P VWTN+ C HP ++ E E+ A R+ ELG+ D+
Sbjct: 56 KAWPGVWTNSVCGHP--QQGETFEQ-------AVTRRCRFELGVEISDI 95
>sp|Q5E7U8|IDI_VIBF1 Isopentenyl-diphosphate Delta-isomerase OS=Vibrio fischeri (strain
ATCC 700601 / ES114) GN=idi PE=3 SV=1
Length = 181
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 68/139 (48%), Gaps = 24/139 (17%)
Query: 91 CILVDENDRVVGHENKYNCHLMEKIES--LNLLHRAFSVFLFNSK---YELLLQQRSGTK 145
+LV+E +G MEK+E+ LLH AFSV L+ E LLQ+R+ K
Sbjct: 5 VVLVNEQGDAIG--------TMEKLEAHEKGLLHLAFSVLLYRETDLGKEFLLQKRAECK 56
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205
W+NTCCSHP E+ V A R+L +E+GI V ++F LG
Sbjct: 57 YHSKNKWSNTCCSHPRVNEN---------VEVAGTRRLNEEIGITG--VLPEQFVNLGWF 105
Query: 206 LYKAPSDGKWGEHERNVFI 224
+Y+A + EHE++ +
Sbjct: 106 IYQAELENGLSEHEQDYIL 124
>sp|C1AP18|IDI_MYCBT Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis
(strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=idi
PE=3 SV=1
Length = 176
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 14/106 (13%)
Query: 89 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 148
+ +L+++ G +K H + LH AFS ++F+ +LL+ +R+ TK T+
Sbjct: 12 ERVVLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVFDLHDQLLITRRAATKRTW 66
Query: 149 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 194
P VWTN+CC HPL ES + A +R+L ELG+ + V
Sbjct: 67 PAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPDRV 103
>sp|A1KJG2|IDI_MYCBP Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis
(strain BCG / Pasteur 1173P2) GN=idi PE=3 SV=1
Length = 176
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 14/106 (13%)
Query: 89 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 148
+ +L+++ G +K H + LH AFS ++F+ +LL+ +R+ TK T+
Sbjct: 12 ERVVLLNDRGDATGVADKATVHTGD-----TPLHLAFSSYVFDLHDQLLITRRAATKRTW 66
Query: 149 PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 194
P VWTN+CC HPL ES + A +R+L ELG+ + V
Sbjct: 67 PAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPDRV 103
>sp|Q8Z3X9|IDI_SALTI Isopentenyl-diphosphate Delta-isomerase OS=Salmonella typhi GN=idi
PE=3 SV=1
Length = 181
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 15/112 (13%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+ +RS +K
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLVTRRSLSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV-PV 196
+P VWTN+ C HP ++ E EE A R+ ELG+ D+ PV
Sbjct: 56 KAWPGVWTNSVCGHP--QQGETTEE-------AIIRRCRFELGVEITDLTPV 98
>sp|B5RE00|IDI_SALG2 Isopentenyl-diphosphate Delta-isomerase OS=Salmonella gallinarum
(strain 287/91 / NCTC 13346) GN=idi PE=3 SV=1
Length = 181
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 15/112 (13%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+ +RS +K
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLVTRRSLSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV-PV 196
+P VWTN+ C HP ++ E EE A R+ ELG+ D+ PV
Sbjct: 56 KAWPGVWTNSVCGHP--QQGETTEE-------AIIRRCRFELGVEITDLTPV 98
>sp|Q8ZM82|IDI_SALTY Isopentenyl-diphosphate Delta-isomerase OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=idi PE=1 SV=1
Length = 181
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 15/112 (13%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+ +RS +K
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLVTRRSLSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV-PV 196
+P VWTN+ C HP ++ E EE A R+ ELG+ D+ PV
Sbjct: 56 KAWPGVWTNSVCGHP--QQGETTEE-------AIIRRCRFELGVEITDLTPV 98
>sp|B4TUQ7|IDI_SALSV Isopentenyl-diphosphate Delta-isomerase OS=Salmonella
schwarzengrund (strain CVM19633) GN=idi PE=3 SV=1
Length = 181
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 15/112 (13%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+ +RS +K
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLVTRRSLSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV-PV 196
+P VWTN+ C HP ++ E EE A R+ ELG+ D+ PV
Sbjct: 56 KAWPGVWTNSVCGHP--QQGETTEE-------AIIRRCRFELGVEITDLTPV 98
>sp|B5BFK4|IDI_SALPK Isopentenyl-diphosphate Delta-isomerase OS=Salmonella paratyphi A
(strain AKU_12601) GN=idi PE=3 SV=1
Length = 181
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 15/112 (13%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+ +RS +K
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLVTRRSLSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV-PV 196
+P VWTN+ C HP ++ E EE A R+ ELG+ D+ PV
Sbjct: 56 KAWPGVWTNSVCGHP--QQGETTEE-------AIIRRCRFELGVEITDLTPV 98
>sp|C0PY11|IDI_SALPC Isopentenyl-diphosphate Delta-isomerase OS=Salmonella paratyphi C
(strain RKS4594) GN=idi PE=3 SV=1
Length = 181
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 15/112 (13%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+ +RS +K
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLVTRRSLSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV-PV 196
+P VWTN+ C HP ++ E EE A R+ ELG+ D+ PV
Sbjct: 56 KAWPGVWTNSVCGHP--QQGETTEE-------AIIRRCRFELGVEITDLTPV 98
>sp|Q5PL31|IDI_SALPA Isopentenyl-diphosphate Delta-isomerase OS=Salmonella paratyphi A
(strain ATCC 9150 / SARB42) GN=idi PE=3 SV=1
Length = 181
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 15/112 (13%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+ +RS +K
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLVTRRSLSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV-PV 196
+P VWTN+ C HP ++ E EE A R+ ELG+ D+ PV
Sbjct: 56 KAWPGVWTNSVCGHP--QQGETTEE-------AIIRRCRFELGVEITDLTPV 98
>sp|B4TGV9|IDI_SALHS Isopentenyl-diphosphate Delta-isomerase OS=Salmonella heidelberg
(strain SL476) GN=idi PE=3 SV=1
Length = 181
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 15/112 (13%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+ +RS +K
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLVTRRSLSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV-PV 196
+P VWTN+ C HP ++ E EE A R+ ELG+ D+ PV
Sbjct: 56 KAWPGVWTNSVCGHP--QQGETTEE-------AIIRRCRFELGVEITDLTPV 98
>sp|B5QXG6|IDI_SALEP Isopentenyl-diphosphate Delta-isomerase OS=Salmonella enteritidis
PT4 (strain P125109) GN=idi PE=3 SV=1
Length = 181
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 15/112 (13%)
Query: 86 MFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTK 145
M E+ +L+DE D+ G KY H + LH AFS +LFN +LL+ +RS +K
Sbjct: 1 MTEEHVVLLDEQDKPSGTLEKYAAHTLN-----TPLHLAFSCWLFNEDGQLLVTRRSLSK 55
Query: 146 VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV-PV 196
+P VWTN+ C HP ++ E EE A R+ ELG+ D+ PV
Sbjct: 56 KAWPGVWTNSVCGHP--QQGETTEE-------AIIRRCRFELGVEITDLTPV 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,197,460
Number of Sequences: 539616
Number of extensions: 2930059
Number of successful extensions: 11311
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 10238
Number of HSP's gapped (non-prelim): 835
length of query: 224
length of database: 191,569,459
effective HSP length: 113
effective length of query: 111
effective length of database: 130,592,851
effective search space: 14495806461
effective search space used: 14495806461
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)