Query 027372
Match_columns 224
No_of_seqs 291 out of 1937
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 08:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0142 Isopentenyl pyrophosph 100.0 3.2E-49 7E-54 340.2 5.8 153 70-224 2-154 (225)
2 PLN02552 isopentenyl-diphospha 100.0 6.3E-42 1.4E-46 303.6 16.1 156 69-224 3-172 (247)
3 COG1443 Idi Isopentenyldiphosp 100.0 5.5E-38 1.2E-42 265.7 7.2 123 87-224 2-124 (185)
4 cd03676 Nudix_hydrolase_3 Memb 100.0 2.5E-29 5.4E-34 209.6 13.0 121 87-224 3-127 (180)
5 PLN02791 Nudix hydrolase homol 100.0 2.8E-29 6E-34 250.8 12.5 121 86-224 1-124 (770)
6 PRK03759 isopentenyl-diphospha 100.0 8.9E-28 1.9E-32 201.9 12.1 122 85-224 2-123 (184)
7 cd02885 IPP_Isomerase Isopente 99.9 1E-27 2.2E-32 197.7 11.5 118 88-224 1-119 (165)
8 TIGR02150 IPP_isom_1 isopenten 99.9 5.6E-27 1.2E-31 192.8 12.5 113 91-224 1-113 (158)
9 PRK15393 NUDIX hydrolase YfcD; 99.9 2.9E-25 6.2E-30 186.8 11.4 109 81-209 2-110 (180)
10 cd04692 Nudix_Hydrolase_33 Mem 99.9 3.5E-21 7.7E-26 154.6 10.2 91 121-223 1-94 (144)
11 cd04697 Nudix_Hydrolase_38 Mem 99.7 5.1E-18 1.1E-22 133.5 9.3 74 123-210 1-74 (126)
12 cd04693 Nudix_Hydrolase_34 Mem 99.7 1.9E-17 4.2E-22 129.4 9.1 74 123-209 1-74 (127)
13 PRK15472 nucleoside triphospha 99.7 2.1E-16 4.6E-21 126.0 9.9 61 122-192 3-63 (141)
14 PLN02839 nudix hydrolase 99.7 5.4E-16 1.2E-20 144.7 11.0 120 87-224 173-296 (372)
15 PF00293 NUDIX: NUDIX domain; 99.6 1E-15 2.3E-20 117.5 9.5 88 121-223 1-88 (134)
16 cd04694 Nudix_Hydrolase_35 Mem 99.6 3.6E-15 7.8E-20 121.8 10.8 90 124-224 3-96 (143)
17 cd04682 Nudix_Hydrolase_23 Mem 99.6 3.3E-15 7.2E-20 116.2 8.3 60 122-192 1-61 (122)
18 cd04681 Nudix_Hydrolase_22 Mem 99.6 1E-14 2.3E-19 113.7 9.7 66 124-206 3-68 (130)
19 cd04683 Nudix_Hydrolase_24 Mem 99.5 7.8E-14 1.7E-18 107.3 9.9 71 124-209 2-72 (120)
20 cd04684 Nudix_Hydrolase_25 Con 99.5 8.8E-14 1.9E-18 107.0 10.0 67 124-208 2-68 (128)
21 cd03426 CoAse Coenzyme A pyrop 99.5 9.2E-14 2E-18 113.9 10.2 62 122-193 2-66 (157)
22 cd04664 Nudix_Hydrolase_7 Memb 99.5 8.3E-14 1.8E-18 108.9 9.4 57 123-192 2-60 (129)
23 cd04679 Nudix_Hydrolase_20 Mem 99.5 1.4E-13 3.1E-18 107.0 10.5 60 122-193 2-61 (125)
24 cd03427 MTH1 MutT homolog-1 (M 99.5 1.4E-13 3E-18 108.3 10.2 71 123-211 2-72 (137)
25 PRK15434 GDP-mannose mannosyl 99.5 1.4E-13 2.9E-18 114.9 10.6 62 119-192 14-75 (159)
26 cd03430 GDPMH GDP-mannose glyc 99.5 2.3E-13 5E-18 110.3 10.3 69 123-206 13-81 (144)
27 cd04677 Nudix_Hydrolase_18 Mem 99.5 1.9E-13 4E-18 106.4 8.5 59 120-193 5-63 (132)
28 cd04699 Nudix_Hydrolase_39 Mem 99.5 3.3E-13 7.1E-18 104.0 9.7 60 124-193 3-62 (129)
29 cd04678 Nudix_Hydrolase_19 Mem 99.5 4E-13 8.6E-18 104.8 10.3 60 122-193 2-61 (129)
30 cd04673 Nudix_Hydrolase_15 Mem 99.5 3.9E-13 8.6E-18 102.8 10.0 69 124-210 2-70 (122)
31 cd04696 Nudix_Hydrolase_37 Mem 99.5 3.8E-13 8.2E-18 104.8 9.9 58 123-194 3-60 (125)
32 cd03673 Ap6A_hydrolase Diadeno 99.5 3.2E-13 7E-18 104.2 9.3 69 124-212 3-74 (131)
33 cd04700 DR1025_like DR1025 fro 99.5 5.9E-13 1.3E-17 107.3 10.6 73 120-209 11-83 (142)
34 cd03424 ADPRase_NUDT5 ADP-ribo 99.4 3.5E-13 7.6E-18 106.1 8.6 70 122-207 2-71 (137)
35 PRK09438 nudB dihydroneopterin 99.4 2.9E-13 6.2E-18 108.7 8.2 57 121-191 6-62 (148)
36 cd04691 Nudix_Hydrolase_32 Mem 99.4 5.3E-13 1.2E-17 103.8 8.9 55 127-192 5-59 (117)
37 cd03671 Ap4A_hydrolase_plant_l 99.4 9.7E-13 2.1E-17 106.1 10.1 59 121-193 2-60 (147)
38 cd04689 Nudix_Hydrolase_30 Mem 99.4 1.3E-12 2.9E-17 101.6 10.3 81 122-224 1-81 (125)
39 cd04685 Nudix_Hydrolase_26 Mem 99.4 1.9E-12 4.1E-17 104.2 11.2 60 123-192 1-60 (133)
40 cd04680 Nudix_Hydrolase_21 Mem 99.4 1E-12 2.2E-17 100.4 8.8 66 124-208 2-67 (120)
41 cd04690 Nudix_Hydrolase_31 Mem 99.4 2.5E-12 5.5E-17 98.4 10.1 69 124-210 2-70 (118)
42 cd04670 Nudix_Hydrolase_12 Mem 99.4 3.3E-12 7.3E-17 99.5 10.9 57 123-192 3-59 (127)
43 cd04687 Nudix_Hydrolase_28 Mem 99.4 2.7E-12 5.8E-17 100.4 10.2 56 124-193 3-58 (128)
44 cd03674 Nudix_Hydrolase_1 Memb 99.4 1.1E-12 2.4E-17 104.7 8.0 57 122-193 2-59 (138)
45 PRK00714 RNA pyrophosphohydrol 99.4 2.7E-12 5.9E-17 105.6 10.3 60 120-193 6-65 (156)
46 cd02883 Nudix_Hydrolase Nudix 99.4 2.4E-12 5.3E-17 95.9 9.1 69 124-210 2-70 (123)
47 cd04688 Nudix_Hydrolase_29 Mem 99.4 3.2E-12 6.9E-17 99.5 10.2 55 122-193 2-56 (126)
48 PRK10776 nucleoside triphospha 99.4 4.9E-12 1.1E-16 97.1 10.0 58 124-192 6-63 (129)
49 cd04676 Nudix_Hydrolase_17 Mem 99.3 4.1E-12 8.9E-17 97.1 8.6 54 124-192 4-57 (129)
50 cd03425 MutT_pyrophosphohydrol 99.3 5.5E-12 1.2E-16 95.3 9.1 70 124-209 3-72 (124)
51 cd04671 Nudix_Hydrolase_13 Mem 99.3 3.9E-12 8.5E-17 100.5 7.5 58 124-193 2-59 (123)
52 cd03429 NADH_pyrophosphatase N 99.3 4.1E-12 8.8E-17 101.0 6.9 57 124-193 2-58 (131)
53 PRK10546 pyrimidine (deoxy)nuc 99.3 2.4E-11 5.2E-16 95.2 10.6 54 129-193 10-63 (135)
54 PLN02325 nudix hydrolase 99.3 1.9E-11 4E-16 99.4 10.2 60 121-193 8-67 (144)
55 KOG4313 Thiamine pyrophosphoki 99.3 8.6E-12 1.9E-16 111.7 8.6 119 88-224 104-227 (306)
56 cd03675 Nudix_Hydrolase_2 Cont 99.3 3.4E-11 7.3E-16 94.5 10.4 55 125-193 3-57 (134)
57 cd03428 Ap4A_hydrolase_human_l 99.3 1.3E-11 2.8E-16 96.0 7.7 56 123-194 3-61 (130)
58 cd04672 Nudix_Hydrolase_14 Mem 99.3 2.9E-11 6.2E-16 94.1 9.3 53 124-192 4-56 (123)
59 cd04669 Nudix_Hydrolase_11 Mem 99.2 2.7E-11 5.9E-16 94.7 8.3 56 125-193 3-58 (121)
60 TIGR00586 mutt mutator mutT pr 99.2 9E-11 1.9E-15 90.6 10.5 59 123-192 5-63 (128)
61 cd04695 Nudix_Hydrolase_36 Mem 99.2 8.9E-11 1.9E-15 92.7 9.7 51 131-194 11-61 (131)
62 COG1051 ADP-ribose pyrophospha 99.2 1.6E-10 3.6E-15 94.7 9.8 60 121-193 9-68 (145)
63 cd04666 Nudix_Hydrolase_9 Memb 99.2 2.7E-10 5.8E-15 90.2 10.3 68 125-211 3-73 (122)
64 cd03672 Dcp2p mRNA decapping e 99.2 9.5E-11 2.1E-15 95.6 7.5 55 124-193 3-58 (145)
65 cd04686 Nudix_Hydrolase_27 Mem 99.1 3.4E-10 7.5E-15 89.8 10.3 52 124-191 2-53 (131)
66 cd04667 Nudix_Hydrolase_10 Mem 99.1 2.8E-10 6E-15 87.2 8.3 46 131-192 8-53 (112)
67 cd04511 Nudix_Hydrolase_4 Memb 99.1 2E-10 4.2E-15 90.6 7.2 56 124-192 15-70 (130)
68 PRK10707 putative NUDIX hydrol 99.1 1.4E-09 3.1E-14 93.0 11.5 62 132-207 42-103 (190)
69 PRK00241 nudC NADH pyrophospha 99.0 9.3E-10 2E-14 98.3 7.9 65 124-207 134-198 (256)
70 PRK08999 hypothetical protein; 99.0 3.3E-09 7.2E-14 95.1 10.3 59 123-192 6-64 (312)
71 PRK05379 bifunctional nicotina 99.0 3E-09 6.4E-14 98.1 9.9 58 122-192 203-260 (340)
72 PRK11762 nudE adenosine nucleo 99.0 3.3E-09 7.2E-14 89.4 9.3 67 124-206 49-115 (185)
73 cd04662 Nudix_Hydrolase_5 Memb 99.0 8.1E-09 1.7E-13 83.9 10.8 58 125-192 3-65 (126)
74 cd04661 MRP_L46 Mitochondrial 98.9 2E-09 4.3E-14 85.8 5.7 48 132-192 11-58 (132)
75 COG0494 MutT NTP pyrophosphohy 98.9 1E-08 2.2E-13 76.8 8.8 55 124-192 13-69 (161)
76 cd04665 Nudix_Hydrolase_8 Memb 98.9 1.5E-08 3.2E-13 80.7 9.1 62 125-208 3-64 (118)
77 PLN02709 nudix hydrolase 98.8 2.5E-08 5.4E-13 88.1 10.1 67 119-194 30-102 (222)
78 cd04674 Nudix_Hydrolase_16 Mem 98.8 2.6E-08 5.6E-13 79.6 9.0 55 125-192 7-61 (118)
79 TIGR00052 nudix-type nucleosid 98.7 3.3E-08 7.2E-13 84.2 7.9 67 124-205 46-117 (185)
80 TIGR02705 nudix_YtkD nucleosid 98.7 1E-07 2.3E-12 79.9 10.3 60 126-207 28-87 (156)
81 KOG3084 NADH pyrophosphatase I 98.6 9.1E-08 2E-12 88.4 5.7 59 124-194 189-247 (345)
82 PRK10729 nudF ADP-ribose pyrop 98.5 5.2E-07 1.1E-11 78.0 9.0 67 124-205 51-122 (202)
83 cd04663 Nudix_Hydrolase_6 Memb 98.4 6.3E-07 1.4E-11 72.7 7.3 51 125-191 3-55 (126)
84 cd03670 ADPRase_NUDT9 ADP-ribo 98.3 1.8E-06 4E-11 74.3 7.7 45 135-194 50-94 (186)
85 PRK15009 GDP-mannose pyrophosp 98.2 7.5E-06 1.6E-10 70.3 9.6 66 124-205 47-118 (191)
86 cd03431 DNA_Glycosylase_C DNA 98.2 9E-06 2E-10 61.3 7.7 56 123-189 3-58 (118)
87 COG2816 NPY1 NTP pyrophosphohy 98.2 2.4E-06 5.3E-11 77.8 5.1 68 124-210 146-213 (279)
88 PLN03143 nudix hydrolase; Prov 98.1 2.2E-05 4.8E-10 71.9 9.2 58 124-192 130-191 (291)
89 KOG3069 Peroxisomal NUDIX hydr 98.0 1.5E-05 3.2E-10 71.3 6.6 62 124-194 45-109 (246)
90 KOG2839 Diadenosine and diphos 97.9 3E-05 6.5E-10 64.7 7.2 62 118-194 6-70 (145)
91 KOG0648 Predicted NUDIX hydrol 97.6 3.4E-05 7.4E-10 70.9 2.6 59 124-192 117-175 (295)
92 KOG3041 Nucleoside diphosphate 97.0 0.0054 1.2E-07 54.1 9.4 54 129-193 81-136 (225)
93 COG4112 Predicted phosphoester 96.3 0.0093 2E-07 51.4 5.9 74 126-205 65-141 (203)
94 COG4119 Predicted NTP pyrophos 96.2 0.0062 1.3E-07 50.7 4.1 51 126-193 19-69 (161)
95 PF14815 NUDIX_4: NUDIX domain 96.1 0.0096 2.1E-07 45.8 4.7 54 127-192 2-55 (114)
96 KOG4195 Transient receptor pot 92.0 0.32 6.9E-06 43.9 5.3 39 135-188 140-178 (275)
97 PF14443 DBC1: DBC1 91.8 0.8 1.7E-05 37.7 7.0 78 136-223 10-89 (126)
98 PF13869 NUDIX_2: Nucleotide h 87.7 1.4 3.1E-05 38.4 5.8 61 116-192 38-100 (188)
99 PRK10880 adenine DNA glycosyla 85.9 2.8 6.1E-05 39.6 7.2 34 121-155 229-262 (350)
100 TIGR01084 mutY A/G-specific ad 82.2 3.9 8.4E-05 37.3 6.2 35 120-155 224-259 (275)
101 PRK13910 DNA glycosylase MutY; 66.0 8.8 0.00019 35.4 4.2 30 123-155 187-216 (289)
102 PF04525 Tub_2: Tubby C 2; In 58.2 37 0.00079 28.5 6.4 60 87-159 26-86 (187)
103 KOG1689 mRNA cleavage factor I 42.6 60 0.0013 28.6 5.2 56 118-190 66-124 (221)
104 PF00571 CBS: CBS domain CBS d 36.3 41 0.00088 21.8 2.7 19 90-108 32-50 (57)
105 TIGR03066 Gem_osc_para_1 Gemma 34.4 55 0.0012 26.4 3.6 34 126-160 36-70 (111)
106 KOG4432 Uncharacterized NUDIX 34.0 55 0.0012 31.2 3.9 39 155-205 83-121 (405)
107 PF03487 IL13: Interleukin-13; 29.8 47 0.001 22.5 2.0 22 157-187 15-36 (43)
108 PF02743 Cache_1: Cache domain 28.9 45 0.00097 23.6 2.0 52 91-143 19-72 (81)
109 PF07494 Reg_prop: Two compone 28.2 34 0.00074 19.7 1.1 17 123-139 5-21 (24)
110 cd04643 CBS_pair_30 The CBS do 28.1 84 0.0018 22.6 3.4 30 79-108 83-112 (116)
111 cd04603 CBS_pair_KefB_assoc Th 27.0 1E+02 0.0022 22.4 3.8 19 90-108 89-107 (111)
112 KOG1202 Animal-type fatty acid 26.8 36 0.00079 38.2 1.7 53 136-193 240-295 (2376)
113 KOG2404 Fumarate reductase, fl 26.7 1.1E+02 0.0024 29.9 4.7 60 46-106 125-184 (477)
114 KOG2937 Decapping enzyme compl 25.4 25 0.00055 33.5 0.2 53 126-193 86-139 (348)
115 COG2524 Predicted transcriptio 24.8 73 0.0016 29.7 3.0 28 81-108 255-285 (294)
116 cd04627 CBS_pair_14 The CBS do 24.3 1.3E+02 0.0027 22.2 3.9 20 89-108 100-119 (123)
117 cd04582 CBS_pair_ABC_OpuCA_ass 24.2 1.2E+02 0.0026 21.3 3.6 18 91-108 85-102 (106)
118 cd04609 CBS_pair_PALP_assoc2 T 23.9 1.1E+02 0.0024 21.5 3.4 30 79-108 77-106 (110)
119 PF08458 PH_2: Plant pleckstri 23.6 1.4E+02 0.003 24.1 4.0 26 118-144 9-35 (110)
120 COG1194 MutY A/G-specific DNA 23.5 39 0.00084 32.2 1.1 33 122-155 235-267 (342)
121 cd04614 CBS_pair_1 The CBS dom 23.0 1.3E+02 0.0028 21.6 3.6 20 89-108 73-92 (96)
122 cd04617 CBS_pair_4 The CBS dom 22.6 1.4E+02 0.0031 21.8 3.8 32 77-108 78-114 (118)
123 cd04619 CBS_pair_6 The CBS dom 22.0 95 0.0021 22.6 2.8 19 90-108 92-110 (114)
124 KOG4432 Uncharacterized NUDIX 21.9 1E+02 0.0023 29.4 3.5 18 175-192 299-316 (405)
125 COG5428 Uncharacterized conser 21.9 99 0.0021 23.1 2.7 26 86-111 28-54 (69)
126 PF05198 IF3_N: Translation in 21.6 78 0.0017 23.5 2.2 22 89-110 13-34 (76)
127 cd04607 CBS_pair_NTP_transfera 20.8 1.7E+02 0.0037 21.0 3.9 19 90-108 91-109 (113)
128 cd04583 CBS_pair_ABC_OpuCA_ass 20.7 1.2E+02 0.0025 21.4 3.0 20 89-108 86-105 (109)
129 PF00370 FGGY_N: FGGY family o 20.6 1.4E+02 0.0029 25.6 3.8 58 125-193 12-69 (245)
130 PF12396 DUF3659: Protein of u 20.4 85 0.0019 22.8 2.1 19 89-107 41-59 (64)
131 cd04641 CBS_pair_28 The CBS do 20.2 1.1E+02 0.0023 22.5 2.7 20 89-108 97-116 (120)
No 1
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-49 Score=340.19 Aligned_cols=153 Identities=66% Similarity=1.020 Sum_probs=146.9
Q ss_pred CCCcccccccHHHHHhhhcCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCCC
Q 027372 70 GDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFP 149 (224)
Q Consensus 70 ~~~~~~~~~d~~q~~lm~eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tfP 149 (224)
|.+..+++||+.|.++|.+ .|++||+||++||..+|+.||+|+++++ |++|||||||+||++|++||||||..|++||
T Consensus 2 ~~~~~~~~~d~~Q~~~l~e-~ci~VDenD~~IG~~tk~~cHl~eni~k-glLHRaFSVFlFns~~~lLlQqRS~~KitFP 79 (225)
T KOG0142|consen 2 MSETNLSGMDEQQVKLLAE-NCILVDENDNVIGAGTKKNCHLMENIEK-GLLHRAFSVFLFNSKNELLLQQRSDEKITFP 79 (225)
T ss_pred CccccccccCHHHHHHHhh-heEeeccccccccchhhhhhhcchhHHh-hhhhheeeEEEecCcchHHHhhhcccccccc
Confidence 5678999999999999986 9999999999999999999999999976 8999999999999999999999999999999
Q ss_pred CceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372 150 LVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224 (224)
Q Consensus 150 G~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil 224 (224)
+.|+|+|||||++...++.+.+++|++.||+|.|+.||||+.+.++.++|+|+++|||++++++.||||||||||
T Consensus 80 ~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~wGEhEiDYiL 154 (225)
T KOG0142|consen 80 GLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIWGEHEIDYIL 154 (225)
T ss_pred chhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCcccceeeEEE
Confidence 999999999999877777788899999999999999999999999999999999999999999999999999996
No 2
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=100.00 E-value=6.3e-42 Score=303.59 Aligned_cols=156 Identities=77% Similarity=1.202 Sum_probs=142.4
Q ss_pred cCCCcccccccHHHHHhhhcCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCC
Q 027372 69 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTF 148 (224)
Q Consensus 69 ~~~~~~~~~~d~~q~~lm~eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tf 148 (224)
+|.+....+||++|+++|++|.|+|||+||+++|.++|+.||+++++..+|++||+|+|||||++|+||||||+..|.+|
T Consensus 3 ~~~~~~~~~~~~~q~~~~~~e~v~lvDe~d~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~ 82 (247)
T PLN02552 3 TMADATWAGMDAVQRRLMFEDECILVDENDNVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATKVTF 82 (247)
T ss_pred ccccccccccCHHHHhhhhcCeEEEEcCCCCEEeeeEHhhhhccccccCCCceEEEEEEEEEcCCCeEEEEEecCCCCCC
Confidence 57788999999999999998999999999999999999999987667678999999999999999999999999999999
Q ss_pred CCceeecCCccCCCCCC--------hhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccC------CC
Q 027372 149 PLVWTNTCCSHPLYRES--------ELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD------GK 214 (224)
Q Consensus 149 PG~Wd~t~gGh~~~gEs--------~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~------~~ 214 (224)
||+||++|||||.+||+ ++..+.++|+.+||+|||+|||||....+++++|.+++++.|..+.. ++
T Consensus 83 Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~ 162 (247)
T PLN02552 83 PLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGK 162 (247)
T ss_pred CcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCC
Confidence 99999999999999854 33445667789999999999999998877778899999999999876 78
Q ss_pred eeeeeeeeeC
Q 027372 215 WGEHERNVFI 224 (224)
Q Consensus 215 wgEhEidyil 224 (224)
|+|||+||+|
T Consensus 163 ~~E~e~~~v~ 172 (247)
T PLN02552 163 WGEHELDYLL 172 (247)
T ss_pred ccceEEEEEE
Confidence 9999999985
No 3
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=100.00 E-value=5.5e-38 Score=265.67 Aligned_cols=123 Identities=40% Similarity=0.612 Sum_probs=115.7
Q ss_pred hcCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCCh
Q 027372 87 FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE 166 (224)
Q Consensus 87 ~eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~ 166 (224)
.+|.|+++|++|+++|.++|..||.|+.++ +||||++||||.+|+||||||+..|.+|||.|||+|||||.+||+
T Consensus 2 ~~e~vill~~~d~~~G~~~k~~~Ht~d~~~----LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es- 76 (185)
T COG1443 2 MTEDVILLNDDDVPTGTAEKLAAHTGDTPR----LHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGES- 76 (185)
T ss_pred CceeEEEECCCCCccccchhhhhhccccHH----HHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCc-
Confidence 457999999999999999999999975542 999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372 167 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224 (224)
Q Consensus 167 ~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil 224 (224)
.++||+|+|.+||||++.. .+.+.++.+|+|++++.++|+||||||||
T Consensus 77 --------~~~A~~rRl~~ELGie~~~--~d~~~il~rf~YrA~~~~~~~E~Eic~V~ 124 (185)
T COG1443 77 --------NEDAARRRLAYELGIEPDQ--YDKLEILPRFRYRAADPDGIVENEICPVL 124 (185)
T ss_pred --------hHHHHHHHHHHHhCCCCcc--cCccccccceEEeccCCCCcceeeeeeEE
Confidence 7999999999999999986 46789999999999999999999999996
No 4
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.96 E-value=2.5e-29 Score=209.57 Aligned_cols=121 Identities=14% Similarity=0.142 Sum_probs=104.4
Q ss_pred hcCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEE--EEeCC--CeEEEEEecCCCCCCCCceeecCCccCCC
Q 027372 87 FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVF--LFNSK--YELLLQQRSGTKVTFPLVWTNTCCSHPLY 162 (224)
Q Consensus 87 ~eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~--lfn~~--g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~ 162 (224)
.+|.++|||++|+++|.++|..+|. +|++||+|+++ ++|.+ ++||+|||+..|.+|||+||++||||++.
T Consensus 3 ~~E~~~v~d~~~~~~~~~~r~~~~~------~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~ 76 (180)
T cd03676 3 RNELYAVYGPFGEPLFEIERAASRL------FGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGH 76 (180)
T ss_pred cCcceeeECCCCCEeEEEEeccccc------CCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCC
Confidence 3689999999999999999999884 79999999965 55766 89999999999999999999999999999
Q ss_pred CCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372 163 RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224 (224)
Q Consensus 163 gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil 224 (224)
||+ +.+||+|||+|||||+...+ ..+.+++.+.|.....+....+|++|+|
T Consensus 77 gE~---------~~~aA~REl~EE~Gl~~~~~--~~l~~~g~~~~~~~~~~~~~~~e~~~~f 127 (180)
T cd03676 77 GEG---------PEETLVKECDEEAGLPEDLV--RQLKPVGVVSYLREGEAGGLQPEVEYVY 127 (180)
T ss_pred CCC---------HHHHHHHHHHHHhCCCHHHH--hhceeccEEEEEEEcCCCcEeeeEEEEE
Confidence 999 79999999999999998653 2367888888877634456788888875
No 5
>PLN02791 Nudix hydrolase homolog
Probab=99.96 E-value=2.8e-29 Score=250.81 Aligned_cols=121 Identities=30% Similarity=0.402 Sum_probs=108.2
Q ss_pred hhcCeEEEEcCCCcEEEE-EecccccchhhcccCCeeEEEEEEEEEeC-CCeEEEEEecCCCCCCCCceeecCCccCCCC
Q 027372 86 MFEDECILVDENDRVVGH-ENKYNCHLMEKIESLNLLHRAFSVFLFNS-KYELLLQQRSGTKVTFPLVWTNTCCSHPLYR 163 (224)
Q Consensus 86 m~eE~~~vvD~~d~~iG~-~~R~~~Hl~~~i~~~gllHra~sv~lfn~-~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~g 163 (224)
|++|.|||||++|+++|. ..|..||. .|++||+|+|||||. +|+||||||+..|.+|||+||++||||+++|
T Consensus 1 ~~eE~~DI~De~g~~~G~~~~R~evH~------~Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aG 74 (770)
T PLN02791 1 MMEEHLDVLTAAGEKTGVSKPRGEVHR------DGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAG 74 (770)
T ss_pred CCceEEEEECCCCCCCCccccHHhhcc------CCCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCC
Confidence 567899999999999998 68989995 699999999999996 6999999999999999999999999999999
Q ss_pred CChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcc-cCCCeeeeeeeeeC
Q 027372 164 ESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP-SDGKWGEHERNVFI 224 (224)
Q Consensus 164 Es~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~-~~~~wgEhEidyil 224 (224)
|+ +.+||+|||+||+||.+ +.+++.+++.+.+... .++.|+|||++|||
T Consensus 75 Es---------~~eAA~REL~EELGI~l---~~~~l~~l~~~~~~~~~~~g~~~e~E~~~VY 124 (770)
T PLN02791 75 DT---------SLLSAQRELEEELGIIL---PKDAFELLFVFLQECVINDGKFINNEYNDVY 124 (770)
T ss_pred CC---------HHHHHHHHHHHHhCCCC---ChhheeeeeeEEEEeeccCCCcceeeEEEEE
Confidence 99 68999999999999985 3457888998876643 45679999999986
No 6
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.95 E-value=8.9e-28 Score=201.95 Aligned_cols=122 Identities=34% Similarity=0.515 Sum_probs=101.5
Q ss_pred hhhcCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCC
Q 027372 85 LMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRE 164 (224)
Q Consensus 85 lm~eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gE 164 (224)
||.+|.|+|||+||+++|.++|+.+|+ .+|++|++++|+|+|++|+|||+||+..|..|||+|++++|||+++||
T Consensus 2 ~~~~E~~~~vd~~~~~~g~~~r~~~~~-----~~~~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GE 76 (184)
T PRK03759 2 MMETELVVLLDEQGVPTGTAEKAAAHT-----ADTPLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGE 76 (184)
T ss_pred CCCceeEEEECCCCCCcccccHHHHHh-----cCCCeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCC
Confidence 466789999999999999999999995 369999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372 165 SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224 (224)
Q Consensus 165 s~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil 224 (224)
+ +.+||+||+.|||||.+..+. .+++.+.|.....++...++++++|
T Consensus 77 t---------~~~aa~REl~EEtGl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vf 123 (184)
T PRK03759 77 S---------LEDAVIRRCREELGVEITDLE----LVLPDFRYRATDPNGIVENEVCPVF 123 (184)
T ss_pred C---------HHHHHHHHHHHHhCCCccccc----cccceEEEEEecCCCceeeEEEEEE
Confidence 9 799999999999999885321 2344555544433344566666553
No 7
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.95 E-value=1e-27 Score=197.68 Aligned_cols=118 Identities=54% Similarity=0.842 Sum_probs=103.8
Q ss_pred cCeEEEEcCCCcEEEEEecccccchhhcccCCee-EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCCh
Q 027372 88 EDECILVDENDRVVGHENKYNCHLMEKIESLNLL-HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE 166 (224)
Q Consensus 88 eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gll-Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~ 166 (224)
+|.++|||++++++|.++|+.+|. +|++ |++|+++|+|++|++||+||+..|..|||.|++++|||+++||+
T Consensus 1 ~e~~~~~d~~~~~~g~~~r~~~~~------~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt- 73 (165)
T cd02885 1 EELVILVDEDDNPIGTAEKLEAHL------KGTLLHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEG- 73 (165)
T ss_pred CcEEEEECCCCCCccccCHHHHhh------cCCcceeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCC-
Confidence 479999999999999999999885 5788 99999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372 167 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224 (224)
Q Consensus 167 ~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil 224 (224)
+.+||+||++|||||.+.... +. ++.+.|..+..+.+.++++.|+|
T Consensus 74 --------~~eaa~REl~EEtGl~~~~~~---~~-~~~~~~~~~~~~~~~~~~i~~~f 119 (165)
T cd02885 74 --------VKDAAQRRLREELGITGDLLE---LV-LPRFRYRAPDDGGLVEHEIDHVF 119 (165)
T ss_pred --------HHHHHHHHHHHHhCCCccchh---hc-cceEEEEEEcCCCceeeEEEEEE
Confidence 799999999999999976432 22 47788877766677788887765
No 8
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.94 E-value=5.6e-27 Score=192.81 Aligned_cols=113 Identities=55% Similarity=0.852 Sum_probs=96.0
Q ss_pred EEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhh
Q 027372 91 CILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEE 170 (224)
Q Consensus 91 ~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~ 170 (224)
++|||+||+++|..+|+.+|. ..|++|++++++|+|.+|++|||||+.+|..|||+|++++|||++.||+
T Consensus 1 ~~~~d~~~~~~g~~~r~~~~~-----~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE~----- 70 (158)
T TIGR02150 1 VILVDENDNPIGTASKAEVHL-----QETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGEL----- 70 (158)
T ss_pred CEEECCCCCEeeeeeHHHhhh-----cCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCcccH-----
Confidence 589999999999999999985 3699999999999999999999999999999999999999999999995
Q ss_pred hhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372 171 NALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224 (224)
Q Consensus 171 ~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil 224 (224)
+||+||++|||||.+..+ ++..++.+.|..... ++.++++++|
T Consensus 71 ------eaa~REl~EE~Gl~~~~~---~l~~~~~~~~~~~~~--~g~~~~~~~f 113 (158)
T TIGR02150 71 ------EAAIRRLREELGIPADDV---PLTVLPRFSYRARDA--WGEHELCPVF 113 (158)
T ss_pred ------HHHHHHHHHHHCCCcccc---ceEEcceEEEEEecC--CCcEEEEEEE
Confidence 799999999999998653 255666666665432 2356776654
No 9
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.92 E-value=2.9e-25 Score=186.82 Aligned_cols=109 Identities=26% Similarity=0.340 Sum_probs=96.8
Q ss_pred HHHHhhhcCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccC
Q 027372 81 VQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHP 160 (224)
Q Consensus 81 ~q~~lm~eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~ 160 (224)
+|+.+|..|.++|||+||+++|.++|..+|. +|+.|+++.++|+|++|++|||+|+..+..+||+|+.++|||+
T Consensus 2 ~~~~~~~~e~~~~~d~~~~~~g~~~~~~~~~------~~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~v 75 (180)
T PRK15393 2 EQRRLASTEWVDIVNENNEVIAQASREQMRA------QCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVV 75 (180)
T ss_pred CCCCCCCceEEEEECCCCCEeeEEEHHHHhh------CCCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcC
Confidence 5888999999999999999999999998884 6999999999999999999999999999889999998889999
Q ss_pred CCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEc
Q 027372 161 LYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKA 209 (224)
Q Consensus 161 ~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a 209 (224)
++||+ +.+||+|||.|||||.... +.+++.+.|..
T Consensus 76 e~GEs---------~~eAA~REL~EEtGl~~~~-----~~~~~~~~~~~ 110 (180)
T PRK15393 76 QAGEQ---------LLESARREAEEELGIAGVP-----FAEHGQFYFED 110 (180)
T ss_pred CCCCC---------HHHHHHHHHHHHHCCCCcc-----ceeceeEEecC
Confidence 99999 7999999999999998643 34456555543
No 10
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=3.5e-21 Score=154.55 Aligned_cols=91 Identities=30% Similarity=0.456 Sum_probs=75.3
Q ss_pred eEEEEEEEEEeCC---CeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 027372 121 LHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197 (224)
Q Consensus 121 lHra~sv~lfn~~---g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~ 197 (224)
+||+|+|+|+|.+ ++||+|||+..|..|||.|++++|||++.||+ +.+||+|||.|||||.++. .
T Consensus 1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt---------~~~aa~REl~EEtGl~~~~---~ 68 (144)
T cd04692 1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGET---------PLEDGIRELEEELGLDVSA---D 68 (144)
T ss_pred CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCC---------HHHHHHHHHHHHhCCCCCh---H
Confidence 6999999999988 89999999999999999999988999999999 7999999999999998642 4
Q ss_pred ceeeeeEEEEEcccCCCeeeeeeeee
Q 027372 198 EFTPLGRILYKAPSDGKWGEHERNVF 223 (224)
Q Consensus 198 ~l~~lgri~Y~a~~~~~wgEhEidyi 223 (224)
++.+++.+.+....++....+++.++
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~~~~~~~ 94 (144)
T cd04692 69 DLIPLGTFKIEYDHIGKLIDREFHHV 94 (144)
T ss_pred HeEEeeEEEEeccccCCCccceEEEE
Confidence 57788888776542333344454443
No 11
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=5.1e-18 Score=133.45 Aligned_cols=74 Identities=36% Similarity=0.449 Sum_probs=65.4
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeee
Q 027372 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 202 (224)
Q Consensus 123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~l 202 (224)
|+|+|+++|++|+||||||+..+.++||+|+++.|||+++||+ +.+||+||++||+||++. .+..+
T Consensus 1 ~~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~---------~~~aa~REl~EEtGl~~~-----~l~~~ 66 (126)
T cd04697 1 RATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGES---------YLQNAQRELEEELGIDGV-----QLTPL 66 (126)
T ss_pred CeEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCC---------HHHHHHHHHHHHHCCCcc-----ccEEe
Confidence 5899999999999999999999988999999977999999999 799999999999999875 45667
Q ss_pred eEEEEEcc
Q 027372 203 GRILYKAP 210 (224)
Q Consensus 203 gri~Y~a~ 210 (224)
+.+.|...
T Consensus 67 ~~~~~~~~ 74 (126)
T cd04697 67 GLFYYDTD 74 (126)
T ss_pred eEEEecCC
Confidence 77766543
No 12
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=1.9e-17 Score=129.39 Aligned_cols=74 Identities=38% Similarity=0.525 Sum_probs=64.0
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeee
Q 027372 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 202 (224)
Q Consensus 123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~l 202 (224)
++|.++++|++|++|||||+..|..+||+|++++|||++.||+ + +||+||++|||||.+.. ..+.++
T Consensus 1 ~~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~---------~-~aa~REl~EEtGl~~~~---~~~~~~ 67 (127)
T cd04693 1 LVVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGET---------S-TAAEREVKEELGLELDF---SELRPL 67 (127)
T ss_pred CeEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCC---------H-HHHHHHHHHHhCCCcCh---hhcEEE
Confidence 4688999999999999999999989999999999999999999 8 99999999999999753 245566
Q ss_pred eEEEEEc
Q 027372 203 GRILYKA 209 (224)
Q Consensus 203 gri~Y~a 209 (224)
+++.|..
T Consensus 68 ~~~~~~~ 74 (127)
T cd04693 68 FRYFFEA 74 (127)
T ss_pred EEEEeec
Confidence 6665544
No 13
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.68 E-value=2.1e-16 Score=125.99 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=56.7
Q ss_pred EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
+|+|.+++++.+|++||+||+..|..|||+|++| |||+++||+ +.+||+||++|||||.+.
T Consensus 3 ~r~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~ 63 (141)
T PRK15472 3 QRTIVCPLIQNDGAYLLCKMADDRGVFPGQWALS-GGGVEPGER---------IEEALRREIREELGEQLL 63 (141)
T ss_pred ceeEEEEEEecCCEEEEEEecccCCCCCCceeCC-cccCCCCCC---------HHHHHHHHHHHHHCCcee
Confidence 5788999998899999999999888999999999 899999999 799999999999999864
No 14
>PLN02839 nudix hydrolase
Probab=99.66 E-value=5.4e-16 Score=144.71 Aligned_cols=120 Identities=13% Similarity=0.035 Sum_probs=98.0
Q ss_pred hcCeEEEEcC-CCcEEEEEecccccchhhcccCCeeEEEEEEEEEe---CCCeEEEEEecCCCCCCCCceeecCCccCCC
Q 027372 87 FEDECILVDE-NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFN---SKYELLLQQRSGTKVTFPLVWTNTCCSHPLY 162 (224)
Q Consensus 87 ~eE~~~vvD~-~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv~lfn---~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~ 162 (224)
.+|.+.|++. ++.+...++|..+-+ .|+.-.++|+--+- .+++||++||+.+|.+|||+|||+++|++.+
T Consensus 173 RnE~y~V~~~~~~~~l~~iERaA~~l------fGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~a 246 (372)
T PLN02839 173 RNELYPVKPSFNAPVFFSLERAAAPY------FGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPH 246 (372)
T ss_pred ccCccccccCCCCcceEEEeeccccc------cCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccC
Confidence 4788999975 457999999998665 58999999876542 3347999999999999999999999999999
Q ss_pred CCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372 163 RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224 (224)
Q Consensus 163 gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil 224 (224)
||+ +.++++||+.||+||+.+.+ ..+...|.+.|....+.+ ..+|+-|+|
T Consensus 247 Ges---------p~etliREa~EEAgLp~~l~--~~~~~~G~VsY~~~~~~g-~~~evly~Y 296 (372)
T PLN02839 247 GIS---------CGENLVKECEEEAGISKAIA--DRAIAVGAVSYMDIDQYC-FKRDVLFCY 296 (372)
T ss_pred CCC---------HHHHHHHHHHHHcCCCHHHH--hcceEeEEEEEEEEcCCc-cccCEEEEe
Confidence 999 79999999999999997653 478899999998665543 345555553
No 15
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.64 E-value=1e-15 Score=117.49 Aligned_cols=88 Identities=32% Similarity=0.400 Sum_probs=74.3
Q ss_pred eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCcee
Q 027372 121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 200 (224)
Q Consensus 121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~ 200 (224)
+|++++++|+|++|++||.||...+..++++|.++ ||+++.+|+ +.+||+||+.||+|+.+. ...
T Consensus 1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~p-gG~i~~~E~---------~~~aa~REl~EE~g~~~~-----~~~ 65 (134)
T PF00293_consen 1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELP-GGGIEPGES---------PEEAARRELKEETGLDVS-----PLE 65 (134)
T ss_dssp EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESS-EEEECTTSH---------HHHHHHHHHHHHHSEEEE-----EEE
T ss_pred CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecc-eeeEEcCCc---------hhhhHHhhhhhcccceec-----ccc
Confidence 69999999999999999999999988899999998 999999999 799999999999999974 346
Q ss_pred eeeEEEEEcccCCCeeeeeeeee
Q 027372 201 PLGRILYKAPSDGKWGEHERNVF 223 (224)
Q Consensus 201 ~lgri~Y~a~~~~~wgEhEidyi 223 (224)
.++.+.|..+.+..+..+.+.|+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~ 88 (134)
T PF00293_consen 66 LLGLFSYPSPSGDPEGEIVIFFI 88 (134)
T ss_dssp EEEEEEEEETTTESSEEEEEEEE
T ss_pred cceeeeecccCCCcccEEEEEEE
Confidence 77778888776654444444443
No 16
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=3.6e-15 Score=121.79 Aligned_cols=90 Identities=24% Similarity=0.328 Sum_probs=68.8
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg 203 (224)
+|+++++|.+|+|||+||+..+..|||+|++| |||+++||+ +.+||+||+.||+||.+...+ ..+++++
T Consensus 3 ~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~P-gG~v~~~E~---------~~~aa~RE~~EE~gi~~~~~~-~~~~~l~ 71 (143)
T cd04694 3 GVAVLLQSSDQKLLLTRRASSLRIFPNVWVPP-GGHVELGEN---------LLEAGLRELNEETGLTLDPID-KSWQVLG 71 (143)
T ss_pred EEEEEEEcCCCEEEEEEECCCCCCCCCeEECc-ccccCCCCC---------HHHHHHHHHHHHHCCCccccc-cceeEEe
Confidence 68899999999999999999888899999999 999999999 799999999999999876432 1245666
Q ss_pred EEEEEcc--cCC--CeeeeeeeeeC
Q 027372 204 RILYKAP--SDG--KWGEHERNVFI 224 (224)
Q Consensus 204 ri~Y~a~--~~~--~wgEhEidyil 224 (224)
.+.+..+ ... .+.+|++.|++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~y~~ 96 (143)
T cd04694 72 LWESVYPPLLSRGLPKRHHIVVYIL 96 (143)
T ss_pred eeccccccccCCCcccceeEEEEEE
Confidence 5433222 112 23466666653
No 17
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=3.3e-15 Score=116.20 Aligned_cols=60 Identities=25% Similarity=0.357 Sum_probs=53.9
Q ss_pred EEEEEEEEEeCCCeEEEEEecCC-CCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 122 HRAFSVFLFNSKYELLLQQRSGT-KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 122 Hra~sv~lfn~~g~lLLqqRs~~-K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
|.++.++++++ |++||+||+.. +..|||+|+++ ||+++.||+ +.+||+||+.|||||.++
T Consensus 1 ~~v~~~~~~~~-g~vLl~~r~~~~~~~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~ 61 (122)
T cd04682 1 SGVALALLIGD-GRLLLQLRDDKPGIPYPGHWDLP-GGHREGGET---------PLECVLRELLEEIGLTLP 61 (122)
T ss_pred CceEEEEEEcC-CEEEEEEccCCCCCCCCCcEeCC-CccccCCCC---------HHHHHHHHHHHHhCCccc
Confidence 55677777766 99999999987 88999999998 999999999 799999999999999975
No 18
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=1e-14 Score=113.65 Aligned_cols=66 Identities=21% Similarity=0.166 Sum_probs=56.6
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg 203 (224)
+|.++|+|++|++||+||+..+ ++|.|++| |||++.||+ +.+||.||++||+|+.+.. +.+++
T Consensus 3 av~~~i~~~~~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~-----~~~~~ 65 (130)
T cd04681 3 AVGVLILNEDGELLVVRRAREP--GKGTLDLP-GGFVDPGES---------AEEALIREIREETGLKVTE-----LSYLF 65 (130)
T ss_pred eEEEEEEcCCCcEEEEEecCCC--CCCcEeCC-ceeecCCCC---------HHHHHHHHHHHHhCCcccc-----eeEEE
Confidence 6889999999999999998754 68999998 999999999 7999999999999998753 34555
Q ss_pred EEE
Q 027372 204 RIL 206 (224)
Q Consensus 204 ri~ 206 (224)
.+.
T Consensus 66 ~~~ 68 (130)
T cd04681 66 SLP 68 (130)
T ss_pred eec
Confidence 543
No 19
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.52 E-value=7.8e-14 Score=107.35 Aligned_cols=71 Identities=24% Similarity=0.308 Sum_probs=56.9
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg 203 (224)
++.++|++ +|++||+||...+. ++|+|++| ||+++.||+ +.+||+||+.|||||.+. ..++.+++
T Consensus 2 ~v~~vi~~-~~~vLL~~r~~~~~-~~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~v~---~~~~~~~~ 66 (120)
T cd04683 2 AVYVLLRR-DDEVLLQRRANTGY-MDGQWALP-AGHLEKGED---------AVTAAVREAREEIGVTLD---PEDLRLAH 66 (120)
T ss_pred cEEEEEEE-CCEEEEEEccCCCC-CCCeEeCC-ccccCCCCC---------HHHHHHHHHHHHHCCccC---hhheEEEE
Confidence 46677766 58999999987653 59999999 999999999 799999999999999875 23456677
Q ss_pred EEEEEc
Q 027372 204 RILYKA 209 (224)
Q Consensus 204 ri~Y~a 209 (224)
.+++..
T Consensus 67 ~~~~~~ 72 (120)
T cd04683 67 TMHRRT 72 (120)
T ss_pred EEEecC
Confidence 665543
No 20
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.52 E-value=8.8e-14 Score=106.99 Aligned_cols=67 Identities=24% Similarity=0.212 Sum_probs=55.3
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg 203 (224)
++.++|+++ +++||.||+..+ ++|.|.++ |||++.||+ +.+||+||++||+|+.+.. +.+++
T Consensus 2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lP-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~-----~~~~~ 63 (128)
T cd04684 2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLP-GGGIEPGES---------PEEALHREVLEETGLTVEI-----GRRLG 63 (128)
T ss_pred eeEEEEEeC-CEEEEEEccCCC--CCCeEECC-CcccCCCCC---------HHHHHHHHHHHHhCcEeec-----ceeee
Confidence 456677876 899999998765 78999999 999999999 7999999999999998753 34566
Q ss_pred EEEEE
Q 027372 204 RILYK 208 (224)
Q Consensus 204 ri~Y~ 208 (224)
.+.+.
T Consensus 64 ~~~~~ 68 (128)
T cd04684 64 SASRY 68 (128)
T ss_pred EEEEE
Confidence 55443
No 21
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.51 E-value=9.2e-14 Score=113.92 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=56.4
Q ss_pred EEEEEEEEEeCC--CeEEEEEecCCCCCCCCceeecCCccCCCC-CChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 122 HRAFSVFLFNSK--YELLLQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 122 Hra~sv~lfn~~--g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~g-Es~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
|.+|.++|++.+ +++||+||+..+..+||+|++| |||++.| |+ +.+||+||++||||+.+..
T Consensus 2 ~~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lP-GG~ve~gdEs---------~~eaa~REl~EEtGl~~~~ 66 (157)
T cd03426 2 RAAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFP-GGKVDPGDED---------PVATALREAEEEIGLPPDS 66 (157)
T ss_pred ceEEEEEEEeCCCceEEEEEEcccccccCCCcEECC-CCCcCCCcCC---------HHHHHHHHHHHHhCCCccc
Confidence 568889999876 5899999999988899999999 9999999 99 7999999999999998753
No 22
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.51 E-value=8.3e-14 Score=108.88 Aligned_cols=57 Identities=26% Similarity=0.355 Sum_probs=52.7
Q ss_pred EEEEEEEEeC--CCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 123 RAFSVFLFNS--KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 123 ra~sv~lfn~--~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
|.++|+++|. +|++||+||+.. +||.|+++ |||++.||+ +.+||+||++||+||.+.
T Consensus 2 ~~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~P-gG~ve~~Es---------~~~aa~RE~~EE~Gl~~~ 60 (129)
T cd04664 2 RSVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSV-TGGIEDGES---------PAEAARREVAEETGLDPE 60 (129)
T ss_pred cEEEEEEEEeCCCCEEEEEEeCCC---CCCccccc-CcccCCCCC---------HHHHHHHHHHHHHCCChh
Confidence 6789999998 899999999876 89999987 999999999 799999999999999874
No 23
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=1.4e-13 Score=106.99 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=53.4
Q ss_pred EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
+.++.++|+|.+|++||++|... .++|.|++| |||++.||+ +.+||+||++|||||.+..
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~eaa~RE~~EEtGl~~~~ 61 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRA--PEAGHWGIP-GGKVDWMEA---------VEDAVVREIEEETGLSIHS 61 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCC--CCCCeEeCC-eeeccCCCC---------HHHHHHHHHHHHHCCCccc
Confidence 46788999999999999999854 358999999 999999999 7999999999999999764
No 24
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.50 E-value=1.4e-13 Score=108.25 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=58.9
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeee
Q 027372 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 202 (224)
Q Consensus 123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~l 202 (224)
++..++|.++ |++||++|+..+ ++|.|.++ |||++.||+ +.+||+||+.||+||.+.. +.++
T Consensus 2 ~~~~~~i~~~-~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~-----~~~~ 63 (137)
T cd03427 2 LTTLCFIKDP-DKVLLLNRKKGP--GWGGWNGP-GGKVEPGET---------PEECAIRELKEETGLTIDN-----LKLV 63 (137)
T ss_pred eEEEEEEEEC-CEEEEEEecCCC--CCCeEeCC-ceeCCCCCC---------HHHHHHHHHHHhhCeEeec-----ceEE
Confidence 4566777775 899999999876 89999999 999999999 7999999999999998753 3556
Q ss_pred eEEEEEccc
Q 027372 203 GRILYKAPS 211 (224)
Q Consensus 203 gri~Y~a~~ 211 (224)
+.+.|..+.
T Consensus 64 ~~~~~~~~~ 72 (137)
T cd03427 64 GIIKFPFPG 72 (137)
T ss_pred EEEEEEcCC
Confidence 777766543
No 25
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.50 E-value=1.4e-13 Score=114.90 Aligned_cols=62 Identities=21% Similarity=0.226 Sum_probs=54.8
Q ss_pred CeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 119 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 119 gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
..++-++.++|++.+|++||+||+.. .++|+|++| ||++++||+ +.+||+||++|||||.+.
T Consensus 14 ~~~~~~v~~vI~~~~g~VLL~kR~~~--~~~g~W~lP-GG~VE~GEt---------~~~Aa~REl~EEtGl~v~ 75 (159)
T PRK15434 14 STPLISLDFIVENSRGEFLLGKRTNR--PAQGYWFVP-GGRVQKDET---------LEAAFERLTMAELGLRLP 75 (159)
T ss_pred CCceEEEEEEEECCCCEEEEEEccCC--CCCCcEECC-ceecCCCCC---------HHHHHHHHHHHHHCCccc
Confidence 34556889999998999999999853 478999999 999999999 799999999999999864
No 26
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.48 E-value=2.3e-13 Score=110.29 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=57.7
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeee
Q 027372 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 202 (224)
Q Consensus 123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~l 202 (224)
.++.++|+|.+|++||+||... .++|+|.+| ||+++.||+ +.+||+||++||+||.+.. .++.++
T Consensus 13 v~v~~vI~~~~g~vLl~~R~~~--p~~g~w~lP-GG~ve~gEs---------~~~aa~RE~~EE~Gl~v~~---~~~~~l 77 (144)
T cd03430 13 VSIDLIVENEDGQYLLGKRTNR--PAQGYWFVP-GGRIRKNET---------LTEAFERIAKDELGLEFLI---SDAELL 77 (144)
T ss_pred EEEEEEEEeCCCeEEEEEccCC--CCCCcEECC-CceecCCCC---------HHHHHHHHHHHHHCCCccc---ccceEE
Confidence 4788999999999999999864 479999999 999999999 7999999999999998753 223455
Q ss_pred eEEE
Q 027372 203 GRIL 206 (224)
Q Consensus 203 gri~ 206 (224)
+.+.
T Consensus 78 ~~~~ 81 (144)
T cd03430 78 GVFE 81 (144)
T ss_pred EEEE
Confidence 5543
No 27
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=1.9e-13 Score=106.42 Aligned_cols=59 Identities=34% Similarity=0.418 Sum_probs=53.1
Q ss_pred eeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 120 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 120 llHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
+++.++.++++|.++++||++|+.. |.|++| ||+++.||+ +.+||+||++||+||.+..
T Consensus 5 ~~~~~~~~~v~~~~~~vLL~~r~~~-----~~w~~P-gG~v~~gEt---------~~~aa~REl~EE~Gi~~~~ 63 (132)
T cd04677 5 LILVGAGVILLNEQGEVLLQKRSDT-----GDWGLP-GGAMELGES---------LEETARRELKEETGLEVEE 63 (132)
T ss_pred ccccceEEEEEeCCCCEEEEEecCC-----CcEECC-eeecCCCCC---------HHHHHHHHHHHHhCCeeee
Confidence 4677889999999999999999754 789999 999999999 7999999999999999864
No 28
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=3.3e-13 Score=103.95 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=54.0
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
++.++|+|++|++||+||...+..++|+|++| ||+++.||+ +.+||+||++||+|+.+..
T Consensus 3 ~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EE~Gl~~~~ 62 (129)
T cd04699 3 AVAALIVKDVGRILILKRSKDERTAPGKWELP-GGKVEEGET---------FEEALKREVYEETGLTVTP 62 (129)
T ss_pred eEEEEEECCCCcEEEEEecCCCCCCCCcCcCC-ccCccCCCC---------HHHHHHHHHHHhhCcEEEe
Confidence 56778888879999999998887789999999 999999999 7899999999999998754
No 29
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=4e-13 Score=104.83 Aligned_cols=60 Identities=30% Similarity=0.484 Sum_probs=54.0
Q ss_pred EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
+.++.++|+|++|++||+||... .++|.|+++ |||++.||+ +.+||+||++||+|+.+..
T Consensus 2 ~~~v~~ii~~~~~~iLl~~r~~~--~~~~~w~~P-GG~ve~gEt---------~~~Aa~REl~EE~Gl~~~~ 61 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGS--HGAGTWALP-GGHLEFGES---------FEECAAREVLEETGLHIEN 61 (129)
T ss_pred ceEEEEEEECCCCeEEEEeccCC--CCCCeEECC-cccccCCCC---------HHHHHHHHHHHHhCCcccc
Confidence 35789999999999999999875 478999999 999999999 7999999999999998753
No 30
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=3.9e-13 Score=102.80 Aligned_cols=69 Identities=25% Similarity=0.254 Sum_probs=55.2
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg 203 (224)
++.++|+++ |++||+||... .++|.|.++ |||++.||+ +.+||+||++||||+.+.. +.+++
T Consensus 2 ~v~~ii~~~-~~vLl~~r~~~--~~~~~w~~P-gG~ie~gE~---------~~~aa~RE~~EEtGl~~~~-----~~~~~ 63 (122)
T cd04673 2 AVGAVVFRG-GRVLLVRRANP--PDAGLWSFP-GGKVELGET---------LEQAALRELLEETGLEAEV-----GRLLT 63 (122)
T ss_pred cEEEEEEEC-CEEEEEEEcCC--CCCCeEECC-CcccCCCCC---------HHHHHHHHHHHhhCcEeee-----ceeEE
Confidence 466777875 89999999753 478999998 999999999 7999999999999999753 34566
Q ss_pred EEEEEcc
Q 027372 204 RILYKAP 210 (224)
Q Consensus 204 ri~Y~a~ 210 (224)
.+.+..+
T Consensus 64 ~~~~~~~ 70 (122)
T cd04673 64 VVDVIER 70 (122)
T ss_pred EEEEeec
Confidence 5555443
No 31
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=3.8e-13 Score=104.81 Aligned_cols=58 Identities=16% Similarity=0.351 Sum_probs=51.1
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 194 (224)
Q Consensus 123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v 194 (224)
.++.++|+|++|++||+||.. ++|.|.++ |||+++||+ +.+||+||++|||||.+..+
T Consensus 3 ~~v~~~i~~~~~~iLL~r~~~----~~~~w~lP-GG~ve~gEs---------~~~aa~REl~EEtGl~~~~~ 60 (125)
T cd04696 3 VTVGALIYAPDGRILLVRTTK----WRGLWGVP-GGKVEWGET---------LEEALKREFREETGLKLRDI 60 (125)
T ss_pred cEEEEEEECCCCCEEEEEccC----CCCcEeCC-ceeccCCCC---------HHHHHHHHHHHHhCCccccc
Confidence 357889999899999998752 67999999 999999999 79999999999999988643
No 32
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.46 E-value=3.2e-13 Score=104.24 Aligned_cols=69 Identities=32% Similarity=0.313 Sum_probs=56.5
Q ss_pred EEEEEEEeCC---CeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCcee
Q 027372 124 AFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 200 (224)
Q Consensus 124 a~sv~lfn~~---g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~ 200 (224)
++.+++++.+ ++|||+||... |.|++| |||++.||+ +.+||+||++||+|+.+.. +.
T Consensus 3 ~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~P-gG~v~~gEs---------~~~aa~REl~EEtGl~~~~-----~~ 62 (131)
T cd03673 3 AAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLP-KGKLEPGET---------PPEAAVREVEEETGIRAEV-----GD 62 (131)
T ss_pred eEEEEEEEccCCCeEEEEEEcCCC-----CcccCC-CCccCCCCC---------HHHHHHHHHhhhhCCceEe-----cc
Confidence 5677778775 89999999753 899999 999999999 7999999999999998753 34
Q ss_pred eeeEEEEEcccC
Q 027372 201 PLGRILYKAPSD 212 (224)
Q Consensus 201 ~lgri~Y~a~~~ 212 (224)
+++.+.|..+..
T Consensus 63 ~~~~~~~~~~~~ 74 (131)
T cd03673 63 PLGTIRYWFSSS 74 (131)
T ss_pred eEEEEEEeccCC
Confidence 677777766543
No 33
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.45 E-value=5.9e-13 Score=107.31 Aligned_cols=73 Identities=23% Similarity=0.260 Sum_probs=59.4
Q ss_pred eeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCce
Q 027372 120 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 199 (224)
Q Consensus 120 llHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l 199 (224)
+.-+++.++|+|.+|++||.||.... .+|.|++| ||++++||+ +.+||+||++||||+.+.. +
T Consensus 11 ~~~~av~~vv~~~~~~vLL~~r~~~~--~~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~-----~ 73 (142)
T cd04700 11 VEARAAGAVILNERNDVLLVQEKGGP--KKGLWHIP-SGAVEDGEF---------PQDAAVREACEETGLRVRP-----V 73 (142)
T ss_pred eeeeeEEEEEEeCCCcEEEEEEcCCC--CCCeEECC-ceecCCCCC---------HHHHHHHHHHHhhCceeec-----c
Confidence 56688999999999999988876542 58999999 999999999 7999999999999999753 2
Q ss_pred eeeeEEEEEc
Q 027372 200 TPLGRILYKA 209 (224)
Q Consensus 200 ~~lgri~Y~a 209 (224)
.+++.+.+..
T Consensus 74 ~~~~~~~~~~ 83 (142)
T cd04700 74 KFLGTYLGRF 83 (142)
T ss_pred EEEEEEEEEc
Confidence 4555554443
No 34
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.45 E-value=3.5e-13 Score=106.14 Aligned_cols=70 Identities=19% Similarity=0.165 Sum_probs=58.2
Q ss_pred EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceee
Q 027372 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 201 (224)
Q Consensus 122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~ 201 (224)
|+++.++++|++|++||.+|...+ ..++.|++| ||+++.||+ +.+||+||++||+||.+. .+..
T Consensus 2 ~~~v~v~~~~~~~~iLl~~~~~~~-~~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EE~Gl~~~-----~~~~ 65 (137)
T cd03424 2 PDAVAVLPYDDDGKVVLVRQYRPP-VGGWLLELP-AGLIDPGED---------PEEAARRELEEETGYEAG-----DLEK 65 (137)
T ss_pred CCEEEEEEEcCCCeEEEEEeeecC-CCCEEEEeC-CccCCCCCC---------HHHHHHHHHHHHHCCCcc-----ceEE
Confidence 578999999999999998765544 368899998 999999999 799999999999999985 3456
Q ss_pred eeEEEE
Q 027372 202 LGRILY 207 (224)
Q Consensus 202 lgri~Y 207 (224)
++.+.+
T Consensus 66 ~~~~~~ 71 (137)
T cd03424 66 LGSFYP 71 (137)
T ss_pred EeeEec
Confidence 665544
No 35
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.45 E-value=2.9e-13 Score=108.73 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=50.6
Q ss_pred eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCc
Q 027372 121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA 191 (224)
Q Consensus 121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~ 191 (224)
.+-++.++++|.+|++||.||.. .||.|+++ |||++.||+ +.+||+|||+|||||.+
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~----~~~~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~ 62 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRAD----DPDFWQSV-TGSLEEGET---------PAQTAIREVKEETGIDV 62 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecC----CCCcEeCC-cccCCCCCC---------HHHHHHHHHHHHhCcCc
Confidence 34578889999999999998864 37999998 999999999 79999999999999987
No 36
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.44 E-value=5.3e-13 Score=103.83 Aligned_cols=55 Identities=31% Similarity=0.260 Sum_probs=48.6
Q ss_pred EEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 127 VFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 127 v~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
++|+++ |++||+||+..+..+||+|+++ ||+++.||+ +.+||+||+.||+|+.+.
T Consensus 5 ~vi~~~-~~vLL~rR~~~~~~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~ 59 (117)
T cd04691 5 GVLFSD-DKVLLERRSLTKNADPGKLNIP-GGHIEAGES---------QEEALLREVQEELGVDPL 59 (117)
T ss_pred EEEEEC-CEEEEEEeCCCCCCCCCeEECc-ceeecCCCC---------HHHHHHHHHHHHHCCCcc
Confidence 345554 8999999998887799999998 999999999 799999999999999863
No 37
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.43 E-value=9.7e-13 Score=106.11 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=53.1
Q ss_pred eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
+|.++.++|+|.+|++||+||+..+ ++|++| |||+++||+ +.+||+||++|||||.+..
T Consensus 2 ~~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~P-gG~~e~gE~---------~~~aA~REv~EEtGl~~~~ 60 (147)
T cd03671 2 YRPNVGVVLFNEDGKVFVGRRIDTP----GAWQFP-QGGIDEGED---------PEQAALRELEEETGLDPDS 60 (147)
T ss_pred CCceEEEEEEeCCCEEEEEEEcCCC----CCEECC-cCCCCCCcC---------HHHHHHHHHHHHHCCCcCc
Confidence 3568899999999999999998765 899999 999999999 7999999999999999753
No 38
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.42 E-value=1.3e-12 Score=101.55 Aligned_cols=81 Identities=26% Similarity=0.256 Sum_probs=59.7
Q ss_pred EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceee
Q 027372 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 201 (224)
Q Consensus 122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~ 201 (224)
|-.+.++|++ +|++||+||.. .+.|.+| |||++.||+ +.+||+||++||||+.+.. ..+
T Consensus 1 ~~~~~~vi~~-~~~vLlv~~~~-----~~~~~lP-GG~ve~gEt---------~~~aa~REl~EEtGl~~~~-----~~~ 59 (125)
T cd04689 1 HLRARAIVRA-GNKVLLARVIG-----QPHYFLP-GGHVEPGET---------AENALRRELQEELGVAVSD-----GRF 59 (125)
T ss_pred CeEEEEEEEe-CCEEEEEEecC-----CCCEECC-CCcCCCCCC---------HHHHHHHHHHHHhCceeec-----cEE
Confidence 3456677774 68999999853 2689999 999999999 7999999999999998753 356
Q ss_pred eeEEEEEcccCCCeeeeeeeeeC
Q 027372 202 LGRILYKAPSDGKWGEHERNVFI 224 (224)
Q Consensus 202 lgri~Y~a~~~~~wgEhEidyil 224 (224)
++.+.+..+..+. ..|++.|+|
T Consensus 60 l~~~~~~~~~~~~-~~~~~~~~f 81 (125)
T cd04689 60 LGAIENQWHEKGV-RTHEINHIF 81 (125)
T ss_pred EEEEeeeeccCCc-eEEEEEEEE
Confidence 6766555444333 346666553
No 39
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.42 E-value=1.9e-12 Score=104.19 Aligned_cols=60 Identities=28% Similarity=0.306 Sum_probs=54.5
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
|+++++++|.+|++||++|...+..+++.|.++ |||++.||+ +.+||+||+.||+|+.+.
T Consensus 1 ~~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~P-gG~ve~gE~---------~~~a~~Re~~EE~G~~~~ 60 (133)
T cd04685 1 RAARVVLLDPDDRVLLLRGDDPDSPGPDWWFTP-GGGVEPGES---------PEQAARRELREETGITVA 60 (133)
T ss_pred CeEEEEEEcCCCeEEEEEEeCCCCCCCCEEECC-cCCCCCCCC---------HHHHHHHHHHHHHCCccc
Confidence 578999999999999999987665578999998 999999999 799999999999999983
No 40
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.41 E-value=1e-12 Score=100.42 Aligned_cols=66 Identities=23% Similarity=0.190 Sum_probs=53.8
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg 203 (224)
+++++++|.+|++||+||+.. +.|.+| ||+++.||+ +.+||+||++||+|+.+.. .+.+++
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~~-----~~w~~P-gG~ve~gEt---------~~~aa~REl~EEtG~~~~~----~~~~~~ 62 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTYG-----PGWYLP-GGGLERGET---------FAEAARRELLEELGIRLAV----VAELLG 62 (120)
T ss_pred ceEEEEECCCCeEEEEEECCC-----CcEeCC-CCcCCCCCC---------HHHHHHHHHHHHHCCcccc----ccceEE
Confidence 478899999999999998753 389999 999999999 7999999999999999861 234555
Q ss_pred EEEEE
Q 027372 204 RILYK 208 (224)
Q Consensus 204 ri~Y~ 208 (224)
.+.+.
T Consensus 63 ~~~~~ 67 (120)
T cd04680 63 VYYHS 67 (120)
T ss_pred EEecC
Confidence 55443
No 41
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.40 E-value=2.5e-12 Score=98.42 Aligned_cols=69 Identities=22% Similarity=0.224 Sum_probs=55.5
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg 203 (224)
.+.+++++.+|++||.||.. .|.|.+| ||+++++|+ +.+||+||++||||+.+.. ..+.+++
T Consensus 2 ~~~~~v~~~~~~vLl~~r~~-----~~~w~~P-gG~ve~~Es---------~~~aa~REl~EEtGl~~~~---~~~~~~~ 63 (118)
T cd04690 2 IAAALILVRDGRVLLVRKRG-----TDVFYLP-GGKIEAGET---------PLQALIRELSEELGLDLDP---DSLEYLG 63 (118)
T ss_pred eEEEEEEecCCeEEEEEECC-----CCcEECC-CCccCCCCC---------HHHHHHHHHHHHHCCccCh---hheEEEE
Confidence 35677888899999988864 3689998 999999999 7999999999999998742 2367777
Q ss_pred EEEEEcc
Q 027372 204 RILYKAP 210 (224)
Q Consensus 204 ri~Y~a~ 210 (224)
.+.+...
T Consensus 64 ~~~~~~~ 70 (118)
T cd04690 64 TFRAPAA 70 (118)
T ss_pred EEecccc
Confidence 7765433
No 42
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.40 E-value=3.3e-12 Score=99.54 Aligned_cols=57 Identities=26% Similarity=0.314 Sum_probs=50.6
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
-++.++|+|.+|++||.||... ++|+|.+| |||++.||+ +.+||+||++||+||...
T Consensus 3 ~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~P-GG~ve~gEt---------~~~aa~RE~~EE~Gl~~~ 59 (127)
T cd04670 3 VGVGGLVLNEKNEVLVVQERNK---TPNGWKLP-GGLVDPGED---------IFDGAVREVLEETGIDTE 59 (127)
T ss_pred eEEEEEEEcCCCeEEEEEccCC---CCCcEECC-CccCCCCCC---------HHHHHHHHHHHHHCCCcc
Confidence 4567889999999999887654 78999999 999999999 799999999999999875
No 43
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.39 E-value=2.7e-12 Score=100.40 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=47.1
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
++.++|++ +|++||+||... .++.|.+| |||++.||+ +.+||+||+.||||+.+..
T Consensus 3 ~a~~iv~~-~~~vLl~~r~~~---~~~~~~lP-GG~ve~gEt---------~~~aa~RE~~EEtGl~v~~ 58 (128)
T cd04687 3 SAKAVIIK-NDKILLIKHHDD---GGVWYILP-GGGQEPGET---------LEDAAHRECKEEIGIDVEI 58 (128)
T ss_pred EEEEEEEE-CCEEEEEEEEcC---CCCeEECC-CcccCCCCC---------HHHHHHHHHHHHHCCcccc
Confidence 45666665 589999999653 35789999 999999999 7999999999999999864
No 44
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.39 E-value=1.1e-12 Score=104.71 Aligned_cols=57 Identities=30% Similarity=0.299 Sum_probs=51.5
Q ss_pred EEEEEEEEEeCC-CeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 122 HRAFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 122 Hra~sv~lfn~~-g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
|.+++++++|++ +++||.||+. .|.|..| |||+++||+ +.+||+||++||+|+.+..
T Consensus 2 ~~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~ 59 (138)
T cd03674 2 HFTASAFVVNPDRGKVLLTHHRK-----LGSWLQP-GGHIDPDES---------LLEAALRELREETGIELLG 59 (138)
T ss_pred cEEEEEEEEeCCCCeEEEEEEcC-----CCcEECC-ceecCCCCC---------HHHHHHHHHHHHHCCCccc
Confidence 889999999987 8999998865 4899998 999999999 7999999999999998653
No 45
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.39 E-value=2.7e-12 Score=105.59 Aligned_cols=60 Identities=22% Similarity=0.292 Sum_probs=54.1
Q ss_pred eeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 120 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 120 llHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
-+|.++.++++|.+|++||+||+.. |+.|++| |||++.||+ +.+||.||+.||||+.+..
T Consensus 6 ~~~~~v~~~i~~~~g~vLL~~r~~~----~~~w~~P-~G~~~~gE~---------~~~aa~REl~EEtG~~~~~ 65 (156)
T PRK00714 6 GYRPNVGIILLNRQGQVFWGRRIGQ----GHSWQFP-QGGIDPGET---------PEQAMYRELYEEVGLRPED 65 (156)
T ss_pred CCCCeEEEEEEecCCEEEEEEEcCC----CCeEECC-cccCCCCcC---------HHHHHHHHHHHHhCCCccc
Confidence 3778999999999999999999842 6899999 999999999 7999999999999998753
No 46
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.39 E-value=2.4e-12 Score=95.87 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=56.7
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg 203 (224)
+++++++|.++++||+||... ++|+|.++ ||+++.+|+ +.++|+||+.||+|+.+.. ..+++
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p-~G~~~~~e~---------~~~~a~RE~~EE~Gl~~~~-----~~~~~ 63 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADS---PGGLWELP-GGGVEPGET---------LEEAAIREVREETGLDVDV-----LRLLG 63 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCC---CCCeEeCC-cccccCCCC---------HHHHHHHHHHHhhCcccee-----eeEEE
Confidence 567888888899999999977 78999999 999999999 7899999999999998742 23445
Q ss_pred EEEEEcc
Q 027372 204 RILYKAP 210 (224)
Q Consensus 204 ri~Y~a~ 210 (224)
.+.|..+
T Consensus 64 ~~~~~~~ 70 (123)
T cd02883 64 VYEVESP 70 (123)
T ss_pred EEEeecc
Confidence 5555544
No 47
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.39 E-value=3.2e-12 Score=99.53 Aligned_cols=55 Identities=25% Similarity=0.309 Sum_probs=47.9
Q ss_pred EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
||++.+++.| +++||+||.. .+.|.++ |||++.||+ +.+||+||+.||||+.+..
T Consensus 2 ~~v~~vi~~~--~~vLl~~~~~-----~~~w~lP-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~ 56 (126)
T cd04688 2 VRAAAIIIHN--GKLLVQKNPD-----ETFYRPP-GGGIEFGES---------SEEALIREFKEELGLKIEI 56 (126)
T ss_pred eEEEEEEEEC--CEEEEEEeCC-----CCeEECC-CccccCCCC---------HHHHHHHHHHHHhCCceec
Confidence 7888887754 5999999875 5799999 999999999 7999999999999998754
No 48
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.37 E-value=4.9e-12 Score=97.15 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=49.8
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
.+.++|.|.+|++||+||+... .++|+|++| ||+++.||+ ..+||+||+.||+|+.+.
T Consensus 6 ~~~~ii~~~~~~vll~rR~~~~-~~~g~w~~P-gG~~~~gE~---------~~~a~~Re~~EE~gl~~~ 63 (129)
T PRK10776 6 IAVGIIRNPNNEIFITRRAADA-HMAGKWEFP-GGKIEAGET---------PEQALIRELQEEVGITVQ 63 (129)
T ss_pred EEEEEEECCCCEEEEEEecCCC-CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHHHCCcee
Confidence 3445567788899999998765 489999999 999999999 689999999999999864
No 49
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.35 E-value=4.1e-12 Score=97.13 Aligned_cols=54 Identities=22% Similarity=0.272 Sum_probs=49.0
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
++.++++|++|++||+||... |+|++| |||++.||+ +.+||+||++||+|+.+.
T Consensus 4 ~v~~ii~~~~~~vLl~~r~~~-----~~w~lP-gG~v~~~E~---------~~~aa~REl~EE~Gl~~~ 57 (129)
T cd04676 4 GVTAVVRDDEGRVLLIRRSDN-----GLWALP-GGAVEPGES---------PADTAVREVREETGLDVE 57 (129)
T ss_pred eEEEEEECCCCeEEEEEecCC-----CcEECC-eeccCCCCC---------HHHHHHHHHHHHhCceeE
Confidence 577888898899999999864 899999 999999999 789999999999999875
No 50
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.35 E-value=5.5e-12 Score=95.34 Aligned_cols=70 Identities=21% Similarity=0.231 Sum_probs=56.7
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg 203 (224)
++.++|+|++|++||+||+..+ .++|+|+++ ||++..+|+ +.++|+||+.||+|+.+.. ..+++
T Consensus 3 ~~~~~i~~~~~~~Ll~~r~~~~-~~~g~w~~p-~G~~~~~e~---------~~~~a~Re~~EE~g~~~~~-----~~~~~ 66 (124)
T cd03425 3 VVAAIIIDDDGRILIAQRPAGK-HLGGLWEFP-GGKVEPGET---------PEQALVRELREELGIEVEV-----GELLA 66 (124)
T ss_pred EEEEEEECCCCEEEEEEeCCCC-CCCCeEeCC-CcccCCCCC---------HHHHHHHHHHHhhCcEEec-----cceEE
Confidence 3456677887999999999887 689999998 999999999 7899999999999998753 23455
Q ss_pred EEEEEc
Q 027372 204 RILYKA 209 (224)
Q Consensus 204 ri~Y~a 209 (224)
.+.+..
T Consensus 67 ~~~~~~ 72 (124)
T cd03425 67 TVEHDY 72 (124)
T ss_pred EEEeeC
Confidence 554443
No 51
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.33 E-value=3.9e-12 Score=100.54 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=51.8
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
++.++++|.+|++||+||... .+++.|.+| |||++.||+ +.+||+||++||||+.+..
T Consensus 2 ~~~~vv~~~~~~vLl~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtG~~~~~ 59 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKR--SCRGKWYLP-AGRMEPGET---------IEEAVKREVKEETGLDCEP 59 (123)
T ss_pred EEEEEEEcCCCEEEEEEecCC--CCCCeEECc-eeecCCCCC---------HHHHHHHHHHHHHCCeeec
Confidence 577888999999999999753 368999999 999999999 7999999999999999864
No 52
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.31 E-value=4.1e-12 Score=101.00 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=49.8
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
+|.++|+|.++++||+||... .+|.|+++ |||++.||+ +.+||+||++|||||.+..
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~---~~~~w~lP-gG~ie~gEt---------~~~aA~REl~EEtGl~~~~ 58 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRF---PPGMYSLL-AGFVEPGES---------LEEAVRREVKEEVGIRVKN 58 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCC---CCCcCcCC-cccccCCCC---------HHHHHhhhhhhccCceeee
Confidence 577888988899999999642 26899998 999999999 7999999999999999753
No 53
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.30 E-value=2.4e-11 Score=95.25 Aligned_cols=54 Identities=28% Similarity=0.287 Sum_probs=46.9
Q ss_pred EEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 129 LFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 129 lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
|++.+|++||+||...+ .++|+|.+| ||+++.||+ +.+|++||+.||+|+.+..
T Consensus 10 ii~~~~~vLL~~R~~~~-~~~g~w~~P-gG~ve~gE~---------~~~a~~RE~~EE~Gl~~~~ 63 (135)
T PRK10546 10 IIERDGKILLAQRPAHS-DQAGLWEFA-GGKVEPGES---------QPQALIRELREELGIEATV 63 (135)
T ss_pred EEecCCEEEEEEccCCC-CCCCcEECC-cccCCCCCC---------HHHHHHHHHHHHHCCcccc
Confidence 33567899999998765 489999999 999999999 6889999999999998753
No 54
>PLN02325 nudix hydrolase
Probab=99.30 E-value=1.9e-11 Score=99.40 Aligned_cols=60 Identities=25% Similarity=0.311 Sum_probs=50.8
Q ss_pred eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
...++.++|++. |+|||+||+... .-|.|.++ |||++.||+ +.+||+||++|||||.+..
T Consensus 8 p~~~v~~vi~~~-~~vLL~rr~~~~--~~g~W~lP-GG~ve~gEs---------~~~aa~REv~EEtGl~v~~ 67 (144)
T PLN02325 8 PRVAVVVFLLKG-NSVLLGRRRSSI--GDSTFALP-GGHLEFGES---------FEECAAREVKEETGLEIEK 67 (144)
T ss_pred CeEEEEEEEEcC-CEEEEEEecCCC--CCCeEECC-ceeCCCCCC---------HHHHHHHHHHHHHCCCCcc
Confidence 456677788764 799999998643 34899999 999999999 7999999999999998764
No 55
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=99.29 E-value=8.6e-12 Score=111.72 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=97.8
Q ss_pred cCeEEEEcCCCcEEEEEecccccchhhcccCCeeEEEEEE--EEEeCCC---eEEEEEecCCCCCCCCceeecCCccCCC
Q 027372 88 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSV--FLFNSKY---ELLLQQRSGTKVTFPLVWTNTCCSHPLY 162 (224)
Q Consensus 88 eE~~~vvD~~d~~iG~~~R~~~Hl~~~i~~~gllHra~sv--~lfn~~g---~lLLqqRs~~K~tfPG~Wd~t~gGh~~~ 162 (224)
.|...+| .+.+++-.++|....+ .|.+.-++++ +|.+++- ++|++|||.+|.||||+|||.++|.+..
T Consensus 104 ne~Y~v~-~~kkp~l~vERa~~~l------fGv~~yGvhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~ 176 (306)
T KOG4313|consen 104 NELYTVY-KSKKPVLAVERAATPL------FGVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSV 176 (306)
T ss_pred ceeeEEE-ecCcceeEeeecccce------eeEEEeeeeeeeeecCCCcCceEEEecccCCccccCcchhhhhhcccccc
Confidence 4567777 8889999999987665 4777777765 5666553 6999999999999999999999999999
Q ss_pred CCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEcccCCCeeeeeeeeeC
Q 027372 163 RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHERNVFI 224 (224)
Q Consensus 163 gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~~~~wgEhEidyil 224 (224)
|-. +.++|++|..||..|+.+. ..+|...|.+.|..--...|...|..|||
T Consensus 177 g~g---------I~eT~iKE~~EEAnl~~~~--~~Nlv~~G~VSy~~~esr~~~~pe~qYVf 227 (306)
T KOG4313|consen 177 GFG---------IKETAIKEAAEEANLPSDL--VKNLVSAGCVSYYKFESRQGLFPETQYVF 227 (306)
T ss_pred Cch---------HHHHHHHHHHHhcCCchhh--HhcceecceeEEEeeehhhccCccceEEE
Confidence 999 8999999999999999843 36889999998875334567777888886
No 56
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.28 E-value=3.4e-11 Score=94.48 Aligned_cols=55 Identities=25% Similarity=0.234 Sum_probs=45.7
Q ss_pred EEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 125 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 125 ~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
+.+++. .++++||.||... .+++|.++ ||++++||+ +.+||+||++||+|+.+..
T Consensus 3 v~~ii~-~~~~vLlv~r~~~---~~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~ 57 (134)
T cd03675 3 VAAVVE-RDGRFLLVEEETD---GGLVFNQP-AGHLEPGES---------LIEAAVRETLEETGWHVEP 57 (134)
T ss_pred EEEEEE-ECCEEEEEEEccC---CCceEECC-CccCCCCCC---------HHHHHHHHHHHHHCccccc
Confidence 344444 5689999998654 56899999 999999999 7999999999999998753
No 57
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.27 E-value=1.3e-11 Score=95.95 Aligned_cols=56 Identities=30% Similarity=0.289 Sum_probs=47.6
Q ss_pred EEEEEEEEeCCC---eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372 123 RAFSVFLFNSKY---ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 194 (224)
Q Consensus 123 ra~sv~lfn~~g---~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v 194 (224)
+++.+++|+.++ ++||.||+. |.|++| |||++.||+ +.+||+||++||+|+.+..+
T Consensus 3 ~~~g~vi~~~~~~~~~vLl~~~~~------~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~ 61 (130)
T cd03428 3 RSAGAIIYRRLNNEIEYLLLQASY------GHWDFP-KGHVEPGED---------DLEAALRETEEETGITAEQL 61 (130)
T ss_pred eEEEEEEEEecCCCceEEEEEccC------CcCcCC-cCCCCCCCC---------HHHHHHHHHHHHHCCChhhh
Confidence 567777777554 688888875 889999 999999999 79999999999999998643
No 58
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.27 E-value=2.9e-11 Score=94.15 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=46.1
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
.+.++|+++ |++||.||.. .|.|.++ ||+++.||+ +.+||+||++||+|+.+.
T Consensus 4 ~v~~~i~~~-~~vLL~~~~~-----~~~w~~P-GG~ve~gEs---------~~~aa~REl~EEtG~~~~ 56 (123)
T cd04672 4 DVRAAIFKD-GKILLVREKS-----DGLWSLP-GGWADVGLS---------PAENVVKEVKEETGLDVK 56 (123)
T ss_pred eEEEEEEEC-CEEEEEEEcC-----CCcEeCC-ccccCCCCC---------HHHHHHHHHHHHhCCeee
Confidence 467788876 8988888764 5899999 999999999 799999999999999874
No 59
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.25 E-value=2.7e-11 Score=94.74 Aligned_cols=56 Identities=25% Similarity=0.259 Sum_probs=47.9
Q ss_pred EEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 125 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 125 ~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
++++|++++|++||+||.... .++|.+| ||+++.||+ +.+||+||++||||+.+..
T Consensus 3 ~~~ii~~~~~~vLL~~r~~~~---~~~w~lP-GG~ve~gEs---------~~~a~~REl~EEtGl~~~~ 58 (121)
T cd04669 3 ASIVIINDQGEILLIRRIKPG---KTYYVFP-GGGIEEGET---------PEEAAKREALEELGLDVRV 58 (121)
T ss_pred eEEEEEeCCCEEEEEEEecCC---CCcEECC-ceeccCCCC---------HHHHHHHHHHHhhCeeEee
Confidence 356677777999999997542 5899999 999999999 7999999999999999853
No 60
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.23 E-value=9e-11 Score=90.63 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=50.1
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
.++.+++++.+|++||+||.... .+.|+|++| ||+++.||+ +.+|++||+.||+|+.+.
T Consensus 5 ~~~~~ii~~~~~~vLl~~R~~~~-~~~g~w~~P-gg~ve~ge~---------~~~~~~RE~~EE~g~~~~ 63 (128)
T TIGR00586 5 QIAVGIIRNENGEIIITRRADGH-MFAKLLEFP-GGKEEGGET---------PEQAVVRELEEEIGIPQH 63 (128)
T ss_pred EEEEEEEECCCCEEEEEEEeCCC-CCCCeEECC-CcccCCCCC---------HHHHHHHHHHHHHCCcce
Confidence 34455566888899999998765 589999999 999999999 689999999999999864
No 61
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.21 E-value=8.9e-11 Score=92.66 Aligned_cols=51 Identities=25% Similarity=0.355 Sum_probs=45.0
Q ss_pred eCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372 131 NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 194 (224)
Q Consensus 131 n~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v 194 (224)
+.++++||.||... ++|.|..| |||++.||+ +.+||+||++||+||.+..+
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~ 61 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWCHV-AGGVEAGET---------AWQAALRELKEETGISLPEL 61 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEECC-cccccCCCC---------HHHHHHHHHHHHhCCCcccc
Confidence 45679999999865 78999988 999999999 79999999999999987643
No 62
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.17 E-value=1.6e-10 Score=94.67 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=51.0
Q ss_pred eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
...++.+++... |++||.||.... +.|+|.+| ||+++.||+ +.+||.||++|||||.+..
T Consensus 9 p~~~v~~~i~~~-~~iLLvrR~~~p--~~g~WalP-GG~ve~GEt---------~eeaa~REl~EETgL~~~~ 68 (145)
T COG1051 9 PLVAVGALIVRN-GRILLVRRANEP--GAGYWALP-GGFVEIGET---------LEEAARRELKEETGLRVRV 68 (145)
T ss_pred cceeeeEEEEeC-CEEEEEEecCCC--CCCcEeCC-CccCCCCCC---------HHHHHHHHHHHHhCCcccc
Confidence 445677777654 599999998764 68999999 999999999 8999999999999999653
No 63
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.17 E-value=2.7e-10 Score=90.21 Aligned_cols=68 Identities=28% Similarity=0.331 Sum_probs=52.1
Q ss_pred EEEEEEeCC---CeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceee
Q 027372 125 FSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 201 (224)
Q Consensus 125 ~sv~lfn~~---g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~ 201 (224)
+.+++++.+ +++||.+|... +.|.+| |||++.||+ +.+||+||++|||||..... +.+
T Consensus 3 ~g~v~~~~~~~~~~vLLv~~~~~-----~~w~~P-gG~ve~~E~---------~~~aa~RE~~EEtG~~~~~~----~~~ 63 (122)
T cd04666 3 AGAIPYRETGGEVEVLLVTSRRT-----GRWIVP-KGGPEKDES---------PAEAAAREAWEEAGVRGKIG----KRP 63 (122)
T ss_pred EEEEEEEEcCCceEEEEEEecCC-----CeEECC-CCCcCCCCC---------HHHHHHHHHHHHhCCccccc----ceE
Confidence 455555543 57888777532 899999 999999999 79999999999999986432 267
Q ss_pred eeEEEEEccc
Q 027372 202 LGRILYKAPS 211 (224)
Q Consensus 202 lgri~Y~a~~ 211 (224)
++.+.|..+.
T Consensus 64 l~~~~~~~~~ 73 (122)
T cd04666 64 LGRFEYRKRS 73 (122)
T ss_pred EEEEEeeecC
Confidence 8888776653
No 64
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.16 E-value=9.5e-11 Score=95.62 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=47.2
Q ss_pred EEEEEEEeCC-CeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 124 AFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 124 a~sv~lfn~~-g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
+++++++|.+ |++||.||. .++.|++| ||+++.||+ +.+||+|||+||||+.+..
T Consensus 3 ~~gaii~~~~~~~vLLvr~~-----~~~~W~lP-GG~ve~gEs---------~~~AA~REl~EETGl~v~~ 58 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGW-----KSKSWSFP-KGKINKDED---------DHDCAIREVYEETGFDISK 58 (145)
T ss_pred eeEEEEEeCCCCEEEEEEec-----CCCCEECC-CccCCCCcC---------HHHHHHHHHHHhhCcccee
Confidence 4677888875 699998885 24599999 999999999 7999999999999998764
No 65
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.15 E-value=3.4e-10 Score=89.77 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=44.4
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCc
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA 191 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~ 191 (224)
++.++|+++ |++||.||.. .+.|.+| ||+++.||+ +.+||+||++||||+.+
T Consensus 2 ~~~~ii~~~-~~vLLv~~~~-----~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~ 53 (131)
T cd04686 2 AVRAIILQG-DKILLLYTKR-----YGDYKFP-GGGVEKGED---------HIEGLIRELQEETGATN 53 (131)
T ss_pred cEEEEEEEC-CEEEEEEEcC-----CCcEECc-cccCCCCCC---------HHHHHHHHHHHHHCCcc
Confidence 466777764 8999988753 2589999 999999999 79999999999999986
No 66
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.12 E-value=2.8e-10 Score=87.23 Aligned_cols=46 Identities=26% Similarity=0.292 Sum_probs=41.1
Q ss_pred eCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 131 NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 131 n~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
..++++||+||.. |.|.+| ||+++.||+ +.+||.||++||+|+.+.
T Consensus 8 ~~~~~vLlv~r~~------~~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~ 53 (112)
T cd04667 8 RRGGRVLLVRKSG------SRWALP-GGKIEPGET---------PLQAARRELQEETGLQGL 53 (112)
T ss_pred ecCCEEEEEEcCC------CcEeCC-CCcCCCCCC---------HHHHHHHHHHHHhCCccc
Confidence 3568999999863 899999 999999999 799999999999999864
No 67
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.11 E-value=2e-10 Score=90.60 Aligned_cols=56 Identities=20% Similarity=0.116 Sum_probs=47.9
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
++.+++++. +++||.||.... .+|.|+++ |||++.||+ +.+||+||++||+|+.+.
T Consensus 15 ~v~~ii~~~-~~vLL~kr~~~~--~~g~w~lP-gG~ve~gE~---------~~~a~~REl~EEtGl~~~ 70 (130)
T cd04511 15 IVGCVPEWE-GKVLLCRRAIEP--RHGFWTLP-AGFMENGET---------TEQGALRETWEEAGARVE 70 (130)
T ss_pred EEEEEEecC-CEEEEEEecCCC--CCCeEECC-cccccCCCC---------HHHHHHHHHHHHhCCEEE
Confidence 455666764 899999997643 67999999 999999999 799999999999999875
No 68
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.08 E-value=1.4e-09 Score=93.05 Aligned_cols=62 Identities=18% Similarity=0.056 Sum_probs=50.7
Q ss_pred CCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEE
Q 027372 132 SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILY 207 (224)
Q Consensus 132 ~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y 207 (224)
.++.+|++||+..-..++|.|.+| ||.++++|.. +.+||+||++||+|+.++ .+.+++.+..
T Consensus 42 ~~~~vLl~~R~~~~r~~~G~~~~P-GG~~e~~de~--------~~~tA~REl~EEtGl~~~-----~~~~lg~l~~ 103 (190)
T PRK10707 42 PQPTLLLTQRSIHLRKHAGQVAFP-GGAVDPTDAS--------LIATALREAQEEVAIPPS-----AVEVIGVLPP 103 (190)
T ss_pred CCCEEEEEEeCCcccCCCCcEEcC-CcccCCCccc--------HHHHHHHHHHHHHCCCcc-----ceEEEEEeee
Confidence 345899999998766789999999 9999986432 689999999999999875 4567777753
No 69
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.01 E-value=9.3e-10 Score=98.26 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=50.7
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg 203 (224)
++.+.|. .++++||+||...+ +|+|+++ ||++++||+ +.+||+||++||+||.+.. +.+++
T Consensus 134 aViv~V~-~~~~iLL~rr~~~~---~g~wslP-gG~vE~GEs---------~eeAa~REv~EEtGl~v~~-----~~~~~ 194 (256)
T PRK00241 134 CIIVAVR-RGDEILLARHPRHR---NGVYTVL-AGFVEVGET---------LEQCVAREVMEESGIKVKN-----LRYVG 194 (256)
T ss_pred EEEEEEE-eCCEEEEEEccCCC---CCcEeCc-ccCCCCCCC---------HHHHhhhhhhhccCceeee-----eEEEE
Confidence 4445554 45899999986543 7999998 999999999 7999999999999998753 45565
Q ss_pred EEEE
Q 027372 204 RILY 207 (224)
Q Consensus 204 ri~Y 207 (224)
...|
T Consensus 195 s~~~ 198 (256)
T PRK00241 195 SQPW 198 (256)
T ss_pred eEee
Confidence 5443
No 70
>PRK08999 hypothetical protein; Provisional
Probab=98.98 E-value=3.3e-09 Score=95.06 Aligned_cols=59 Identities=24% Similarity=0.260 Sum_probs=50.6
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
..+.++|++.+|++||+||...+ .++|+|++| ||+++.||+ +.+|++||++||+|+.+.
T Consensus 6 ~~~~~vi~~~~~~vLL~kR~~~~-~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~ 64 (312)
T PRK08999 6 HVAAGVIRDADGRILLARRPEGK-HQGGLWEFP-GGKVEPGET---------VEQALARELQEELGIEVT 64 (312)
T ss_pred EEEEEEEECCCCeEEEEEecCCC-CCCCeEECC-ccCCCCCCC---------HHHHHHHHHHHHhCCcee
Confidence 34455667778999999998765 589999999 999999999 689999999999999865
No 71
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=98.97 E-value=3e-09 Score=98.13 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=48.9
Q ss_pred EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
+.++.++|++ +|++||.||.... ++|+|.+| ||++++||+ +.+||+||++|||||.+.
T Consensus 203 ~vtv~avv~~-~g~VLLvrR~~~p--~~g~W~lP-GG~ve~gEt---------~~~Aa~REl~EETGl~v~ 260 (340)
T PRK05379 203 FVTVDAVVVQ-SGHVLLVRRRAEP--GKGLWALP-GGFLEQDET---------LLDACLRELREETGLKLP 260 (340)
T ss_pred ceEEEEEEEE-CCEEEEEEecCCC--CCCeEECC-cccCCCCCC---------HHHHHHHHHHHHHCCccc
Confidence 3555666664 6899999998643 58999999 999999999 799999999999999864
No 72
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=98.96 E-value=3.3e-09 Score=89.36 Aligned_cols=67 Identities=22% Similarity=0.114 Sum_probs=53.1
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg 203 (224)
++.|+.+++++++||.|+.... ..++.|.+| ||++++||+ +.+||+|||+||||+.+. .+.+++
T Consensus 49 ~v~v~~~~~~~~vlLvrq~r~~-~~~~~~elP-aG~ve~gE~---------~~~aA~REl~EEtG~~~~-----~l~~l~ 112 (185)
T PRK11762 49 AVMIVPILDDDTLLLIREYAAG-TERYELGFP-KGLIDPGET---------PLEAANRELKEEVGFGAR-----QLTFLK 112 (185)
T ss_pred EEEEEEEeCCCEEEEEEeecCC-CCCcEEEcc-ceeCCCCCC---------HHHHHHHHHHHHHCCCCc-----ceEEEE
Confidence 5667767788888887764322 356789999 999999999 799999999999999875 456777
Q ss_pred EEE
Q 027372 204 RIL 206 (224)
Q Consensus 204 ri~ 206 (224)
.++
T Consensus 113 ~~~ 115 (185)
T PRK11762 113 ELS 115 (185)
T ss_pred EEe
Confidence 654
No 73
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.95 E-value=8.1e-09 Score=83.93 Aligned_cols=58 Identities=22% Similarity=0.345 Sum_probs=45.7
Q ss_pred EEEEEEe--C-CCeEEEEEecCC--CCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 125 FSVFLFN--S-KYELLLQQRSGT--KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 125 ~sv~lfn--~-~g~lLLqqRs~~--K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
..+++++ . ..++||++|... +..++|.|++| ||+++.||+ +.+||+||+.||||+.+.
T Consensus 3 ~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lP-gG~ie~~E~---------~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 3 AGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIP-KGEYTEGED---------PLLAAKREFSEETGFCVD 65 (126)
T ss_pred EEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECC-cccCCCCcC---------HHHHHHHHHHHHhCCcce
Confidence 4555554 2 247999887543 22467999999 999999999 799999999999999875
No 74
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=98.91 E-value=2e-09 Score=85.81 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=41.2
Q ss_pred CCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 132 SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 132 ~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
+++++||.||...+ .|.|++| ||++++||+ +.+||+||+.||||+.+.
T Consensus 11 ~~~~~Llvk~~~~~---~g~W~fP-gG~ve~gEt---------~~eaa~REl~EEtGl~v~ 58 (132)
T cd04661 11 DDTLVLLVQQKVGS---QNHWILP-QGKREEGET---------LRQTAERTLKELCGNNLK 58 (132)
T ss_pred cCcEEEEEEeecCC---CCeeECC-cccccCCCC---------HHHHHHHHHHHhhCCCce
Confidence 45678888886532 5899999 999999999 799999999999999764
No 75
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.89 E-value=1e-08 Score=76.82 Aligned_cols=55 Identities=27% Similarity=0.279 Sum_probs=44.1
Q ss_pred EEEEEEEeCC-CeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHH-HHHHHHHHHhCCCcc
Q 027372 124 AFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRN-AAQRKLLDELGICAE 192 (224)
Q Consensus 124 a~sv~lfn~~-g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~-AA~REL~EElGI~~~ 192 (224)
++.+.+.... +++|+++|.... +.|.+| ||+++.+|+. .. ||+||+.|||||.+.
T Consensus 13 ~~~~~~~~~~~~~vl~~~~~~~~----~~~~~P-gG~ve~~e~~---------~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 13 AVAVLVGRDGPGEVLLAQRRDDG----GLWELP-GGKVEPGEEL---------PEEAAARELEEETGLRVK 69 (161)
T ss_pred eEEEEEecCCCCEEeEEEccccC----CceecC-CcccCCCCch---------HHHHHHHHHHHHhCCeee
Confidence 3344343333 789999998765 799999 9999999993 55 999999999999986
No 76
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.86 E-value=1.5e-08 Score=80.67 Aligned_cols=62 Identities=24% Similarity=0.278 Sum_probs=48.4
Q ss_pred EEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeE
Q 027372 125 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR 204 (224)
Q Consensus 125 ~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgr 204 (224)
|.|++++. +++||.+|. .+.|.+| ||+++.||+ +.+||+||+.||+|+.+. .+.+++.
T Consensus 3 v~vi~~~~-~~vLl~~~~------~~~w~lP-gG~ve~gE~---------~~~aa~REl~EE~G~~~~-----~~~~l~~ 60 (118)
T cd04665 3 VLVICFYD-DGLLLVRHK------DRGWEFP-GGHVEPGET---------IEEAARREVWEETGAELG-----SLTLVGY 60 (118)
T ss_pred EEEEEEEC-CEEEEEEeC------CCEEECC-ccccCCCCC---------HHHHHHHHHHHHHCCccC-----ceEEEEE
Confidence 45566654 788887774 2579999 999999999 799999999999999974 3567776
Q ss_pred EEEE
Q 027372 205 ILYK 208 (224)
Q Consensus 205 i~Y~ 208 (224)
+.+.
T Consensus 61 ~~~~ 64 (118)
T cd04665 61 YQVD 64 (118)
T ss_pred EEec
Confidence 6543
No 77
>PLN02709 nudix hydrolase
Probab=98.82 E-value=2.5e-08 Score=88.07 Aligned_cols=67 Identities=19% Similarity=0.178 Sum_probs=54.3
Q ss_pred CeeEEEEEEEEEeC------CCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 119 NLLHRAFSVFLFNS------KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 119 gllHra~sv~lfn~------~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
+..+-||-+.|+.. +.++||.+|+.....+||.|.+| ||+++++|.. ..+||+||+.||+||+.+
T Consensus 30 ~~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafP-GG~~e~~D~~--------~~~tAlRE~~EEiGl~~~ 100 (222)
T PLN02709 30 PAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALP-GGKRDEEDKD--------DIATALREAREEIGLDPS 100 (222)
T ss_pred CCCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCC-CcccCCCCCC--------HHHHHHHHHHHHHCCCch
Confidence 34556777777753 22799999999877899999999 9999998653 689999999999999886
Q ss_pred CC
Q 027372 193 DV 194 (224)
Q Consensus 193 ~v 194 (224)
.+
T Consensus 101 ~v 102 (222)
T PLN02709 101 LV 102 (222)
T ss_pred he
Confidence 43
No 78
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.81 E-value=2.6e-08 Score=79.59 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=42.6
Q ss_pred EEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 125 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 125 ~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
+.+++...++.+|+ +|... .++|.|.++ ||+++.||+ +.+||+||+.||+|+.+.
T Consensus 7 av~vl~~~~~~lL~-~r~~~--~~~~~w~lP-gG~ve~~E~---------~~~aa~REl~EE~g~~~~ 61 (118)
T cd04674 7 VVALLPVDDGLLVI-RRGIE--PGRGKLALP-GGFIELGET---------WQDAVARELLEETGVAVD 61 (118)
T ss_pred EEEEEEECCCEEEE-EeecC--CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHHHCCccc
Confidence 34445455554555 55542 368999999 999999999 799999999999999875
No 79
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=98.74 E-value=3.3e-08 Score=84.16 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=49.5
Q ss_pred EEEEEEEeCC-CeEEEEEecCCCC----CCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCc
Q 027372 124 AFSVFLFNSK-YELLLQQRSGTKV----TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 198 (224)
Q Consensus 124 a~sv~lfn~~-g~lLLqqRs~~K~----tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~ 198 (224)
++.+++++++ +++||.++-.... .-|..|.+| ||+++.||+ +.+||+|||+||||+.+..
T Consensus 46 ~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelP-aG~ve~gE~---------~~~aA~REl~EEtG~~~~~----- 110 (185)
T TIGR00052 46 AAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELS-AGMVEKGES---------PEDVARREAIEEAGYQVKN----- 110 (185)
T ss_pred eEEEEEEECCCCEEEEEECceeeeeecCCcceEEEEC-cEecCCCCC---------HHHHHHHHccccccceecc-----
Confidence 5667777654 6877765432211 136789999 999999999 7999999999999999853
Q ss_pred eeeeeEE
Q 027372 199 FTPLGRI 205 (224)
Q Consensus 199 l~~lgri 205 (224)
+.+++.+
T Consensus 111 ~~~~~~~ 117 (185)
T TIGR00052 111 LRKLLSF 117 (185)
T ss_pred eEEEEEE
Confidence 4556554
No 80
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=98.73 E-value=1e-07 Score=79.86 Aligned_cols=60 Identities=20% Similarity=0.157 Sum_probs=45.4
Q ss_pred EEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEE
Q 027372 126 SVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205 (224)
Q Consensus 126 sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri 205 (224)
.++..+ ++++||.++.. ..|.+| ||+++.||+ +.+||+|||.||||+.+. .+.+++.+
T Consensus 28 ~ii~~~-~~~~LL~~~~~------~~~elP-gG~vE~gEt---------~~eaA~REl~EETG~~~~-----~~~~lg~~ 85 (156)
T TIGR02705 28 LVIPRY-KDQWLLTEHKR------RGLEFP-GGKVEPGET---------SKEAAIREVMEETGAIVK-----ELHYIGQY 85 (156)
T ss_pred EEEEEE-CCEEEEEEEcC------CcEECC-ceecCCCCC---------HHHHHHHHHHHHhCcEee-----eeEEEEEE
Confidence 344343 45777766542 359998 999999999 799999999999999864 56788865
Q ss_pred EE
Q 027372 206 LY 207 (224)
Q Consensus 206 ~Y 207 (224)
..
T Consensus 86 ~~ 87 (156)
T TIGR02705 86 EV 87 (156)
T ss_pred Ee
Confidence 43
No 81
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=98.56 E-value=9.1e-08 Score=88.39 Aligned_cols=59 Identities=25% Similarity=0.284 Sum_probs=49.3
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 194 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v 194 (224)
+|-..|.|.+|+.+|..| .|..-||+|+.. +|.+++||+ +++|++||.+||+||+++.|
T Consensus 189 vVIm~li~~d~~~~LL~R--~~r~~~gl~t~l-AGFlEpGES---------~eeav~REtwEEtGi~V~~I 247 (345)
T KOG3084|consen 189 VVIMLLIDHDGKHALLGR--QKRYPPGLWTCL-AGFLEPGES---------IEEAVRRETWEETGIEVEVI 247 (345)
T ss_pred eEEEEEEcCCCCEeeeec--ccCCCCchhhhh-hccCCcccc---------HHHHHHHHHHHHhCceeeeE
Confidence 455667899997666677 345568999998 999999999 89999999999999998754
No 82
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=98.52 E-value=5.2e-07 Score=77.97 Aligned_cols=67 Identities=21% Similarity=0.263 Sum_probs=47.3
Q ss_pred EEEEEEEeCC-CeEEEEE--ecCC-C-CCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCc
Q 027372 124 AFSVFLFNSK-YELLLQQ--RSGT-K-VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 198 (224)
Q Consensus 124 a~sv~lfn~~-g~lLLqq--Rs~~-K-~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~ 198 (224)
++.|+.++++ ++++|.+ |..- + ...+-.|.+| +|.+++||+ +.+||+|||.||||+.+. +
T Consensus 51 ~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~P-AG~vd~gE~---------p~~aA~REL~EETGy~a~-----~ 115 (202)
T PRK10729 51 AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMV-AGMIEEGES---------VEDVARREAIEEAGLIVG-----R 115 (202)
T ss_pred eEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEcc-ceEcCCCCC---------HHHHHHHHHHHHhCceee-----E
Confidence 5667777764 6866644 3221 0 0013479999 999999999 799999999999999875 3
Q ss_pred eeeeeEE
Q 027372 199 FTPLGRI 205 (224)
Q Consensus 199 l~~lgri 205 (224)
+.+++.+
T Consensus 116 ~~~l~~~ 122 (202)
T PRK10729 116 TKPVLSY 122 (202)
T ss_pred EEEEEEE
Confidence 5566544
No 83
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.45 E-value=6.3e-07 Score=72.70 Aligned_cols=51 Identities=22% Similarity=0.143 Sum_probs=39.1
Q ss_pred EEEEEEeCCC--eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCc
Q 027372 125 FSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA 191 (224)
Q Consensus 125 ~sv~lfn~~g--~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~ 191 (224)
+.+++.+.++ +||+.|.. . +.|.+| ||++++||+ +.+||+|||.||||+..
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~-~-----~~~~lP-gG~ve~~E~---------~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHP-L-----AGFQIV-KGTVEPGET---------PEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEeCCceEEEEEEEcC-C-----CcEECC-CccCCCCCC---------HHHHHHHHHHHHHCCee
Confidence 3455555554 45555443 2 459998 999999999 79999999999999996
No 84
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.33 E-value=1.8e-06 Score=74.28 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=38.3
Q ss_pred eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372 135 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 194 (224)
Q Consensus 135 ~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v 194 (224)
++|+.||.. +|.|.+| ||+++++|+ +.+||.|||.||+|+..+.+
T Consensus 50 ~vLl~~r~~-----~g~walP-GG~v~~~E~---------~~~aa~Rel~EEt~l~l~~~ 94 (186)
T cd03670 50 QFVAIKRPD-----SGEWAIP-GGMVDPGEK---------ISATLKREFGEEALNSLQKS 94 (186)
T ss_pred EEEEEEeCC-----CCcCcCC-eeeccCCCC---------HHHHHHHHHHHHHccccccc
Confidence 577888853 5899999 999999999 79999999999998765443
No 85
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=98.24 E-value=7.5e-06 Score=70.29 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=44.5
Q ss_pred EEEEEEEeC-CCeEEEEEecCCCCC-----CCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 027372 124 AFSVFLFNS-KYELLLQQRSGTKVT-----FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 197 (224)
Q Consensus 124 a~sv~lfn~-~g~lLLqqRs~~K~t-----fPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~ 197 (224)
++.|+++++ +++++|.+.=..... -+-.|.+| +|.++.+ + +.+||+|||.||||..+.
T Consensus 47 ~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElP-AG~vd~~-~---------p~~aA~REL~EETGy~a~----- 110 (191)
T PRK15009 47 GATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETC-AGLLDND-E---------PEVCIRKEAIEETGYEVG----- 110 (191)
T ss_pred EEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEe-ccccCCC-C---------HHHHHHHHHHHhhCCccc-----
Confidence 566777776 568776543222110 12367887 7888854 5 589999999999999875
Q ss_pred ceeeeeEE
Q 027372 198 EFTPLGRI 205 (224)
Q Consensus 198 ~l~~lgri 205 (224)
++.+++.+
T Consensus 111 ~~~~l~~~ 118 (191)
T PRK15009 111 EVRKLFEL 118 (191)
T ss_pred eEEEeeEE
Confidence 45667655
No 86
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.17 E-value=9e-06 Score=61.30 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=43.7
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCC
Q 027372 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI 189 (224)
Q Consensus 123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI 189 (224)
+.+.++++..+|++||+||.... .++|+|++| ++.++.+|+ ..++..|++.+|+++
T Consensus 3 ~~~~~~ii~~~~~~ll~kR~~~g-l~~glwefP-~~~~~~~~~---------~~~~~~~~~~~~~~~ 58 (118)
T cd03431 3 RGIAVVVIRNDGRVLLEKRPEKG-LLAGLWEFP-SVEWEEEAD---------GEEALLSALKKALRL 58 (118)
T ss_pred EEEEEEEEecCCeEEEEECCCCC-CCCcceeCC-CccccCCcC---------HHHHHHHHHHHHhCc
Confidence 34455555667899999997654 589999999 788877777 478888999999864
No 87
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=98.16 E-value=2.4e-06 Score=77.83 Aligned_cols=68 Identities=21% Similarity=0.345 Sum_probs=51.0
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeee
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 203 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lg 203 (224)
++-|.+.+. +++||-+|... |||+++.. +|.+++||+ +++|..||++||+||.+.. ++|++
T Consensus 146 ~vIv~v~~~-~~ilLa~~~~h---~~g~yS~L-AGFVE~GET---------lE~AV~REv~EE~Gi~V~~-----vrY~~ 206 (279)
T COG2816 146 CVIVAVIRG-DEILLARHPRH---FPGMYSLL-AGFVEPGET---------LEQAVAREVFEEVGIKVKN-----VRYVG 206 (279)
T ss_pred eEEEEEecC-CceeecCCCCC---CCcceeee-eecccCCcc---------HHHHHHHHHHHhhCeEEee-----eeEEe
Confidence 444445443 45777676654 59999998 999999999 8999999999999999864 46666
Q ss_pred EEEEEcc
Q 027372 204 RILYKAP 210 (224)
Q Consensus 204 ri~Y~a~ 210 (224)
.-.+..|
T Consensus 207 SQPWPfP 213 (279)
T COG2816 207 SQPWPFP 213 (279)
T ss_pred ccCCCCc
Confidence 5544444
No 88
>PLN03143 nudix hydrolase; Provisional
Probab=98.05 E-value=2.2e-05 Score=71.94 Aligned_cols=58 Identities=21% Similarity=0.173 Sum_probs=41.1
Q ss_pred EEEEEEE-eCCCe--EEEEEecCCCCCCCCceeecCCccCCCC-CChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 124 AFSVFLF-NSKYE--LLLQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 124 a~sv~lf-n~~g~--lLLqqRs~~K~tfPG~Wd~t~gGh~~~g-Es~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
++.|++. +.+|+ ++|.++..... -.-.|.+| ||.++.+ |+ +.+||+|||+||||+.+.
T Consensus 130 aVaVL~~l~~~ge~~VlLVrQ~R~pv-g~~~lE~P-AG~lD~~~ed---------p~~aA~REL~EETG~~~~ 191 (291)
T PLN03143 130 AVAVLILLESEGETYAVLTEQVRVPV-GKFVLELP-AGMLDDDKGD---------FVGTAVREVEEETGIKLK 191 (291)
T ss_pred eEEEEEEEeCCCCEEEEEEEeEecCC-CcEEEEec-ccccCCCCCC---------HHHHHHHHHHHHHCCccc
Confidence 5566554 55565 66666554211 12379999 8999975 67 799999999999999864
No 89
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=97.99 E-value=1.5e-05 Score=71.34 Aligned_cols=62 Identities=21% Similarity=0.092 Sum_probs=52.3
Q ss_pred EEEEEEEeC-CC--eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372 124 AFSVFLFNS-KY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 194 (224)
Q Consensus 124 a~sv~lfn~-~g--~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v 194 (224)
+|-+.|++. +| ++||+||+.+-..++|.-.+| ||..++.+.. -..+|.||.+||.|++.+.+
T Consensus 45 aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fP-GG~~d~~D~s--------~~~tAlREt~EEIGl~~~~~ 109 (246)
T KOG3069|consen 45 AVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFP-GGRRDPHDKS--------DIQTALRETEEEIGLDPELV 109 (246)
T ss_pred cEEEEEEEcCCCceEEEEEeccccccccCCceeCC-CCcCCccccc--------hHHHHHHHHHHHhCCCHHHh
Confidence 455566665 34 699999999999999999999 9999998875 46899999999999998653
No 90
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=97.94 E-value=3e-05 Score=64.70 Aligned_cols=62 Identities=24% Similarity=0.205 Sum_probs=46.5
Q ss_pred CCeeEEEEEEEEEeCCC---eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCC
Q 027372 118 LNLLHRAFSVFLFNSKY---ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 194 (224)
Q Consensus 118 ~gllHra~sv~lfn~~g---~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v 194 (224)
.|.. .++.|+.+..++ ++||.+-+.. |-.|.+| +||++++|+ +.+||+||..||.|+.....
T Consensus 6 ~G~r-~vagCi~~r~~~~~ieVLlvsSs~~----~~~wi~P-KGGwE~dE~---------~~eAA~REt~EEAGv~G~l~ 70 (145)
T KOG2839|consen 6 AGFR-LVAGCICYRSDKEKIEVLLVSSSKK----PHRWIVP-KGGWEPDES---------VEEAALRETWEEAGVKGKLG 70 (145)
T ss_pred CCcE-EEEEeeeeeecCcceEEEEEecCCC----CCCccCC-CCCCCCCCC---------HHHHHHHHHHHHhCceeeee
Confidence 3533 344566665544 6787765542 5689999 999999999 79999999999999998654
No 91
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=97.61 E-value=3.4e-05 Score=70.89 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=50.1
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 124 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 124 a~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
++..+|+|.++++|+.|=-+.-...+|.|-++ +|.+.++|+ +.++|+||++||+||+.+
T Consensus 117 gvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~p-tG~v~~~e~---------i~~gavrEvkeetgid~e 175 (295)
T KOG0648|consen 117 GVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLP-TGRVEEGED---------IWHGAVREVKEETGIDTE 175 (295)
T ss_pred eeeeeEecCCceeEEEEecccceeeccccccc-ceEeccccc---------chhhhhhhhHHHhCcchh
Confidence 56789999988999866545555679999999 779999999 799999999999998654
No 92
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=97.01 E-value=0.0054 Score=54.11 Aligned_cols=54 Identities=19% Similarity=0.105 Sum_probs=37.9
Q ss_pred EEeCCCe--EEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 129 LFNSKYE--LLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 129 lfn~~g~--lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
+...+|+ ++|++.-... +-.-...+| +|-++.||+ +..||+|||+||+|+....
T Consensus 81 il~~dG~~~ivL~kQfRpP-~Gk~ciElP-AGLiD~ge~---------~~~aAiREl~EEtGy~gkv 136 (225)
T KOG3041|consen 81 ILESDGKPYIVLVKQFRPP-TGKICIELP-AGLIDDGED---------FEGAAIRELEEETGYKGKV 136 (225)
T ss_pred EEecCCcEEEEEEEeecCC-CCcEEEEcc-cccccCCCc---------hHHHHHHHHHHHhCcccee
Confidence 4456775 6666532211 111256777 899999999 7999999999999998543
No 93
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=96.32 E-value=0.0093 Score=51.39 Aligned_cols=74 Identities=18% Similarity=0.274 Sum_probs=51.1
Q ss_pred EEEEEeCCCeEEEEEecCCC--CCCCCceeecCCccCCCCCChhhhhhhhc-HHHHHHHHHHHHhCCCccCCCCCceeee
Q 027372 126 SVFLFNSKYELLLQQRSGTK--VTFPLVWTNTCCSHPLYRESELIEENALG-VRNAAQRKLLDELGICAEDVPVDEFTPL 202 (224)
Q Consensus 126 sv~lfn~~g~lLLqqRs~~K--~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g-~~~AA~REL~EElGI~~~~v~~~~l~~l 202 (224)
.|+|.|.+ ++|+-.|-... ...-|.+.+-+|||+..++.. ..+.. .+-.+.|||.||+++..++. .++.++
T Consensus 65 Yvvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA---~s~~evLk~n~~REleEEv~vseqd~--q~~e~l 138 (203)
T COG4112 65 YVVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGA---TSREEVLKGNLERELEEEVDVSEQDL--QELEFL 138 (203)
T ss_pred EEEEecCC-EEEEEEeccCcchhhhccccccccccccccCCCc---ccHHHHHccchHHHHHHHhCcCHHHh--hhheee
Confidence 56666655 99999887532 235688999999999998762 11111 33459999999999996653 345666
Q ss_pred eEE
Q 027372 203 GRI 205 (224)
Q Consensus 203 gri 205 (224)
|-|
T Consensus 139 GlI 141 (203)
T COG4112 139 GLI 141 (203)
T ss_pred eee
Confidence 644
No 94
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=96.20 E-value=0.0062 Score=50.66 Aligned_cols=51 Identities=22% Similarity=0.280 Sum_probs=39.1
Q ss_pred EEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 126 SVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 126 sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
-|++..+.|-+|..| --|.|.++ .|-...||+ +..||+||..||+||.++-
T Consensus 19 ~VLLvHPGGPFWa~k-------D~GAWSIP-KGey~~gEd---------p~~AArREf~EE~Gi~vdG 69 (161)
T COG4119 19 DVLLVHPGGPFWAGK-------DDGAWSIP-KGEYTGGED---------PWLAARREFSEEIGICVDG 69 (161)
T ss_pred EEEEecCCCCccccC-------CCCccccc-ccccCCCcC---------HHHHHHHHhhhhhceeecC
Confidence 345555555555522 14899999 889999999 6899999999999999853
No 95
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=96.13 E-value=0.0096 Score=45.78 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=32.0
Q ss_pred EEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 127 VFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 127 v~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
+++.+.+|++||+||..+. .+.|+|++|. --.. ++. ..+++.+.+.+.+|+.+.
T Consensus 2 ~~i~~~~~~~Ll~kRp~~g-ll~GLwefP~-~e~~-~~~---------~~~~l~~~~~~~~~~~~~ 55 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEKG-LLAGLWEFPL-IESD-EED---------DEEELEEWLEEQLGLSIR 55 (114)
T ss_dssp EEEEETTSEEEEEE--SSS-TTTT-EE--E-EE-S-SS----------CHHHHHHHTCCSSS-EEE
T ss_pred EEEEEeCCEEEEEECCCCC-hhhcCcccCE-eCcc-CCC---------CHHHHHHHHHHHcCCChh
Confidence 4678899999999998765 5999999993 2222 332 145566667778888654
No 96
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=91.99 E-value=0.32 Score=43.92 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=33.4
Q ss_pred eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhC
Q 027372 135 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 188 (224)
Q Consensus 135 ~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElG 188 (224)
+++..||.+. |.|.++ ||.+++||- +-....||+.||.=
T Consensus 140 e~vavkr~d~-----~~WAiP-GGmvdpGE~---------vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 140 EFVAVKRPDN-----GEWAIP-GGMVDPGEK---------VSATLKREFGEEAM 178 (275)
T ss_pred EEEEEecCCC-----CcccCC-CCcCCchhh---------hhHHHHHHHHHHHH
Confidence 4566688765 689999 999999999 78999999999973
No 97
>PF14443 DBC1: DBC1
Probab=91.79 E-value=0.8 Score=37.69 Aligned_cols=78 Identities=19% Similarity=0.200 Sum_probs=49.8
Q ss_pred EEEEEecCCCCCCCCceeec-CCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEEEEEccc-CC
Q 027372 136 LLLQQRSGTKVTFPLVWTNT-CCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS-DG 213 (224)
Q Consensus 136 lLLqqRs~~K~tfPG~Wd~t-~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri~Y~a~~-~~ 213 (224)
+|+-+|...-.--.|-|+.. =||.|..+.+. ...+|+|=+++-+||+...-. .-.+|+ .+||..+. ++
T Consensus 10 Flv~~k~ke~~aiGG~WspsLDG~DP~~dp~~--------LI~TAiR~~K~~tgiDLS~Ct-~W~rf~-Ei~Y~R~~~~~ 79 (126)
T PF14443_consen 10 FLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSV--------LIRTAIRTCKALTGIDLSNCT-QWYRFA-EIHYYRPGSDG 79 (126)
T ss_pred eEEeecCceEEecCCcCCcccCCCCCCCCcHH--------HHHHHHHHHHHHhccchhhcC-ccceee-EEEEecCCCCC
Confidence 44444443211225789887 47788777665 689999999999999997532 445555 56666554 34
Q ss_pred Ceeeeeeeee
Q 027372 214 KWGEHERNVF 223 (224)
Q Consensus 214 ~wgEhEidyi 223 (224)
.....|+.-|
T Consensus 80 ~~~~~EivVl 89 (126)
T PF14443_consen 80 FPSHQEIVVL 89 (126)
T ss_pred CCceeEEEEE
Confidence 4455565443
No 98
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=87.70 E-value=1.4 Score=38.43 Aligned_cols=61 Identities=21% Similarity=0.161 Sum_probs=42.1
Q ss_pred ccCCeeEEEEEEEEEeCCC--eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 027372 116 ESLNLLHRAFSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 192 (224)
Q Consensus 116 ~~~gllHra~sv~lfn~~g--~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~ 192 (224)
.+.|+.+.+-+|+|....+ .|||-|.... .|-++ ||...+||++ .+...|+|.+-+|....
T Consensus 38 ~~~GmRrsVe~Vllvh~h~~PHvLLLq~~~~------~fkLP-Gg~l~~gE~e---------~~gLkrkL~~~l~~~~~ 100 (188)
T PF13869_consen 38 EKEGMRRSVEGVLLVHEHGHPHVLLLQIGNT------FFKLP-GGRLRPGEDE---------IEGLKRKLTEKLSPEDG 100 (188)
T ss_dssp HHHSSEEEEEEEEEEEETTEEEEEEEEETTT------EEE-S-EEE--TT--H---------HHHHHHHHHHHHB-SSS
T ss_pred HHhCCceEEEEEEEEecCCCcEEEEEeccCc------cccCC-ccEeCCCCCh---------hHHHHHHHHHHcCCCcC
Confidence 3468887777888888777 4666665543 46677 8999999994 89999999999998753
No 99
>PRK10880 adenine DNA glycosylase; Provisional
Probab=85.93 E-value=2.8 Score=39.60 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=26.1
Q ss_pred eEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeec
Q 027372 121 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNT 155 (224)
Q Consensus 121 lHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t 155 (224)
..+...++++..+|++||+||.... .+.|+|++|
T Consensus 229 ~~~~~~~~~~~~~~~~~l~~r~~~g-l~~gl~~fP 262 (350)
T PRK10880 229 PERTGYFLLLQHGDEVWLEQRPPSG-LWGGLFCFP 262 (350)
T ss_pred CeEEEEEEEEEECCEEEEEECCccC-hhhccccCC
Confidence 4455555666667899999998765 489999999
No 100
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=82.15 E-value=3.9 Score=37.29 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=25.9
Q ss_pred eeEEEEEEEE-EeCCCeEEEEEecCCCCCCCCceeec
Q 027372 120 LLHRAFSVFL-FNSKYELLLQQRSGTKVTFPLVWTNT 155 (224)
Q Consensus 120 llHra~sv~l-fn~~g~lLLqqRs~~K~tfPG~Wd~t 155 (224)
..++.+.+++ .+.+|++||+||.... .+.|+|++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~gl~~~p 259 (275)
T TIGR01084 224 PPERTTYFLVLQNYDGEVLLEQRPEKG-LWGGLYCFP 259 (275)
T ss_pred CCeEEEEEEEEEeCCCeEEEEeCCCCc-hhhccccCC
Confidence 3455555554 4567899999997665 589999998
No 101
>PRK13910 DNA glycosylase MutY; Provisional
Probab=65.97 E-value=8.8 Score=35.39 Aligned_cols=30 Identities=3% Similarity=0.055 Sum_probs=21.7
Q ss_pred EEEEEEEEeCCCeEEEEEecCCCCCCCCceeec
Q 027372 123 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNT 155 (224)
Q Consensus 123 ra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t 155 (224)
+...+++. .+|++||+||. +..+.|+|++|
T Consensus 187 ~~~~~~~~-~~~~~ll~kr~--~~l~~gl~~fP 216 (289)
T PRK13910 187 ERYLGVVI-QNNQIALEKIE--QKLYLGMHHFP 216 (289)
T ss_pred EEEEEEEE-ECCEEEEEECC--CchhcccccCC
Confidence 33344444 46799999994 44789999998
No 102
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=58.16 E-value=37 Score=28.47 Aligned_cols=60 Identities=18% Similarity=0.117 Sum_probs=28.9
Q ss_pred hcCeEEEEcCCCcEEEEEec-ccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecCCCCCCCCceeecCCcc
Q 027372 87 FEDECILVDENDRVVGHENK-YNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSH 159 (224)
Q Consensus 87 ~eE~~~vvD~~d~~iG~~~R-~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh 159 (224)
..+.+.|+|++|+++-...- +..- + .+ ...|.|.+|+.|+.-|.. ...+-..|...-+|.
T Consensus 26 ~~~~f~V~D~~G~~vf~V~g~~~~s----~--~~------~~~l~D~~G~~L~~i~~k-~~~l~~~w~i~~~~~ 86 (187)
T PF04525_consen 26 SGDDFTVYDENGNVVFRVDGGKFFS----I--GK------KRTLMDASGNPLFTIRRK-LFSLRPTWEIYRGGG 86 (187)
T ss_dssp ----EEEEETTS-EEEEEE--SCTT----B--TT------EEEEE-TTS-EEEEEE---------EEEEEETT-
T ss_pred cCCCEEEEcCCCCEEEEEEEecccC----C--CC------EEEEECCCCCEEEEEEee-ecccceEEEEEECCC
Confidence 35789999999999988755 2211 1 11 345789999877665542 344567888775444
No 103
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=42.65 E-value=60 Score=28.59 Aligned_cols=56 Identities=20% Similarity=0.204 Sum_probs=37.6
Q ss_pred CCeeEEEEEEEEEeCCC--e-EEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCC
Q 027372 118 LNLLHRAFSVFLFNSKY--E-LLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGIC 190 (224)
Q Consensus 118 ~gllHra~sv~lfn~~g--~-lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~ 190 (224)
.|....+-.|.|..... . +|||-+.. .+-.+ ||...+||++ .+...|-+.|-+|-.
T Consensus 66 ~gmRrsvegvlivheH~lPHvLLLQig~t-------f~KLP-GG~L~pGE~e---------~~Gl~r~l~~~Lgr~ 124 (221)
T KOG1689|consen 66 EGMRRSVEGVLIVHEHNLPHVLLLQIGNT-------FFKLP-GGRLRPGEDE---------ADGLKRLLTESLGRS 124 (221)
T ss_pred hhhhheeeeeEEEeecCCCeEEEEeeCCE-------EEecC-CCccCCCcch---------hHHHHHHHHHHhccc
Confidence 35454555666665543 3 55555532 23344 8999999996 789999999999933
No 104
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=36.32 E-value=41 Score=21.80 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=16.7
Q ss_pred eEEEEcCCCcEEEEEeccc
Q 027372 90 ECILVDENDRVVGHENKYN 108 (224)
Q Consensus 90 ~~~vvD~~d~~iG~~~R~~ 108 (224)
.+.|+|++++++|..+++.
T Consensus 32 ~~~V~d~~~~~~G~is~~d 50 (57)
T PF00571_consen 32 RLPVVDEDGKLVGIISRSD 50 (57)
T ss_dssp EEEEESTTSBEEEEEEHHH
T ss_pred EEEEEecCCEEEEEEEHHH
Confidence 4899999999999998764
No 105
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=34.42 E-value=55 Score=26.39 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=28.3
Q ss_pred EEEEEeCCCeEEEEEecCCC-CCCCCceeecCCccC
Q 027372 126 SVFLFNSKYELLLQQRSGTK-VTFPLVWTNTCCSHP 160 (224)
Q Consensus 126 sv~lfn~~g~lLLqqRs~~K-~tfPG~Wd~t~gGh~ 160 (224)
.++.|..+|+|.+..+...+ .-|.|.|... |..+
T Consensus 36 ~~leF~~dGKL~v~~gnng~~~~~~Gty~L~-G~kL 70 (111)
T TIGR03066 36 VVIEFAKDGKLVVTIGEKGKEVKADGTYKLD-GNKL 70 (111)
T ss_pred eEEEEcCCCeEEEecCCCCcEeccCceEEEE-CCEE
Confidence 46778899999999998888 7899999997 5544
No 106
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=33.97 E-value=55 Score=31.20 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=28.2
Q ss_pred cCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCceeeeeEE
Q 027372 155 TCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI 205 (224)
Q Consensus 155 t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~v~~~~l~~lgri 205 (224)
.|+|-++..-+ +++-|..|+.||.|-.+. .++|..+-+|
T Consensus 83 lc~g~idke~s---------~~eia~eev~eecgy~v~---~d~l~hv~~~ 121 (405)
T KOG4432|consen 83 LCAGLIDKELS---------PREIASEEVAEECGYRVD---PDDLIHVITF 121 (405)
T ss_pred eeccccccccC---------HHHHhHHHHHHHhCCcCC---hhHceEEEEE
Confidence 35666665555 799999999999999875 4666655433
No 107
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=29.76 E-value=47 Score=22.49 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=11.6
Q ss_pred CccCCCCCChhhhhhhhcHHHHHHHHHHHHh
Q 027372 157 CSHPLYRESELIEENALGVRNAAQRKLLDEL 187 (224)
Q Consensus 157 gGh~~~gEs~~~~~~~~g~~~AA~REL~EEl 187 (224)
||-.-+|.- +...+.|||-||+
T Consensus 15 ggLasPgPv---------p~~~alkELIeEL 36 (43)
T PF03487_consen 15 GGLASPGPV---------PSSTALKELIEEL 36 (43)
T ss_dssp --------S----------HHHHHHHHHHHH
T ss_pred cccCCCCCC---------CchHHHHHHHHHH
Confidence 565566666 5788999999997
No 108
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=28.93 E-value=45 Score=23.61 Aligned_cols=52 Identities=12% Similarity=0.209 Sum_probs=28.4
Q ss_pred EEEEcCCCcEEEEEec--ccccchhhcccCCeeEEEEEEEEEeCCCeEEEEEecC
Q 027372 91 CILVDENDRVVGHENK--YNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSG 143 (224)
Q Consensus 91 ~~vvD~~d~~iG~~~R--~~~Hl~~~i~~~gllHra~sv~lfn~~g~lLLqqRs~ 143 (224)
..|+|.+++++|...- ..-.+.+.+.... +...-.+||+|.+|+++.+....
T Consensus 19 ~pi~~~~g~~~Gvv~~di~l~~l~~~i~~~~-~~~~g~~~ivd~~G~ii~hp~~~ 72 (81)
T PF02743_consen 19 VPIYDDDGKIIGVVGIDISLDQLSEIISNIK-FGNNGYAFIVDKNGTIIAHPDKD 72 (81)
T ss_dssp EEEEETTTEEEEEEEEEEEHHHHHHHHTTSB-BTTTBEEEEEETTSBBCE-SSGG
T ss_pred EEEECCCCCEEEEEEEEeccceeeeEEEeeE-ECCCEEEEEEECCCCEEEeCChH
Confidence 5789999999997432 1101111111101 11112578999999999876544
No 109
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=28.25 E-value=34 Score=19.68 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=11.9
Q ss_pred EEEEEEEEeCCCeEEEE
Q 027372 123 RAFSVFLFNSKYELLLQ 139 (224)
Q Consensus 123 ra~sv~lfn~~g~lLLq 139 (224)
-.+..++.|++|+|++-
T Consensus 5 n~I~~i~~D~~G~lWig 21 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIG 21 (24)
T ss_dssp SCEEEEEE-TTSCEEEE
T ss_pred CeEEEEEEcCCcCEEEE
Confidence 34567778899999874
No 110
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=28.07 E-value=84 Score=22.55 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=20.5
Q ss_pred cHHHHHhhhcCeEEEEcCCCcEEEEEeccc
Q 027372 79 DAVQRRLMFEDECILVDENDRVVGHENKYN 108 (224)
Q Consensus 79 d~~q~~lm~eE~~~vvD~~d~~iG~~~R~~ 108 (224)
.+....+.....+.|+|++++++|..++..
T Consensus 83 ~~a~~~~~~~~~~~Vv~~~~~~~Gvit~~d 112 (116)
T cd04643 83 EEILHLLIDQPFLPVVDDDGIFIGIITRRE 112 (116)
T ss_pred HHHHHHHhcCCceeEEeCCCeEEEEEEHHH
Confidence 344344444445778999999999988753
No 111
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=27.03 E-value=1e+02 Score=22.36 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=16.2
Q ss_pred eEEEEcCCCcEEEEEeccc
Q 027372 90 ECILVDENDRVVGHENKYN 108 (224)
Q Consensus 90 ~~~vvD~~d~~iG~~~R~~ 108 (224)
.+.|+|.+|+++|..++..
T Consensus 89 ~lpVvd~~~~~~Giit~~d 107 (111)
T cd04603 89 VVAVVDKEGKLVGTIYERE 107 (111)
T ss_pred eEEEEcCCCeEEEEEEhHH
Confidence 4789999999999998764
No 112
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=26.85 E-value=36 Score=38.17 Aligned_cols=53 Identities=21% Similarity=0.171 Sum_probs=40.1
Q ss_pred EEEEEecCCCCCCC---CceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 136 LLLQQRSGTKVTFP---LVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 136 lLLqqRs~~K~tfP---G~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
+||||++.-+..|. +.=+|| -||-+.|=+-. .-...+..+||+.+|.||.++.
T Consensus 240 vllqrk~~ArRvYAtilnartNT-DGfKEqGvTfP----~G~~Q~qLi~e~Yse~Gl~P~s 295 (2376)
T KOG1202|consen 240 VLLQRKSLARRVYATILNARTNT-DGFKEQGVTFP----SGDMQEQLIRETYSEAGLNPES 295 (2376)
T ss_pred EEEehhHHHHHHHHHhhccccCC-CchhhcCccCC----CcHHHHHHHHHHHHhcCCCccc
Confidence 78999888877674 456777 77877775531 2236899999999999999874
No 113
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=26.73 E-value=1.1e+02 Score=29.88 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=45.9
Q ss_pred CCCCCCCCCCCCCCcchhhhhcccCCCcccccccHHHHHhhhcCeEEEEcCCCcEEEEEec
Q 027372 46 RPLSLRGASRSSSSSSSARAISTMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENK 106 (224)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~q~~lm~eE~~~vvD~~d~~iG~~~R 106 (224)
.|-+++++...++.+......+....+-+....+.+|+.+ +.+.++|.+++|++.|...-
T Consensus 125 vpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~-nskvv~il~n~gkVsgVeym 184 (477)
T KOG2404|consen 125 VPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILL-NSKVVDILRNNGKVSGVEYM 184 (477)
T ss_pred CCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhh-cceeeeeecCCCeEEEEEEE
Confidence 5678888888888777766665555555667778888887 45689999999999998643
No 114
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=25.41 E-value=25 Score=33.45 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=36.0
Q ss_pred EEEEEeCCC-eEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 126 SVFLFNSKY-ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 126 sv~lfn~~g-~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
+..++|+.- ++||.+--.. .-|.++ -|.....|+ -..+|+||+.||+|.+...
T Consensus 86 ga~ild~~~sr~llv~g~qa-----~sw~fp-rgK~~kdes---------d~~caiReV~eetgfD~sk 139 (348)
T KOG2937|consen 86 GAIILDEKRSRCLLVKGWQA-----SSWSFP-RGKISKDES---------DSDCAIREVTEETGFDYSK 139 (348)
T ss_pred hHhhhhhhhhhhheeeceec-----cccccc-Cccccccch---------hhhcchhcccchhhcCHHH
Confidence 455677543 4554432211 237777 678877777 4899999999999998753
No 115
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=24.82 E-value=73 Score=29.73 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=22.8
Q ss_pred HHHHhhhcCe---EEEEcCCCcEEEEEeccc
Q 027372 81 VQRRLMFEDE---CILVDENDRVVGHENKYN 108 (224)
Q Consensus 81 ~q~~lm~eE~---~~vvD~~d~~iG~~~R~~ 108 (224)
+-.|+|+... +.|+|.+|+++|..+|..
T Consensus 255 dAir~M~~~nVGRLlV~ds~gkpvGiITrTD 285 (294)
T COG2524 255 DAIRLMNKNNVGRLLVTDSNGKPVGIITRTD 285 (294)
T ss_pred HHHHHHHhcCcceEEEEccCCcEEEEEehHH
Confidence 3467888755 789999999999999864
No 116
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=24.25 E-value=1.3e+02 Score=22.18 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=16.8
Q ss_pred CeEEEEcCCCcEEEEEeccc
Q 027372 89 DECILVDENDRVVGHENKYN 108 (224)
Q Consensus 89 E~~~vvD~~d~~iG~~~R~~ 108 (224)
..+.|+|++++++|..++..
T Consensus 100 ~~lpVvd~~~~~vGiit~~d 119 (123)
T cd04627 100 SSVAVVDNQGNLIGNISVTD 119 (123)
T ss_pred ceEEEECCCCcEEEEEeHHH
Confidence 35889999999999998764
No 117
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=24.24 E-value=1.2e+02 Score=21.34 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=15.4
Q ss_pred EEEEcCCCcEEEEEeccc
Q 027372 91 CILVDENDRVVGHENKYN 108 (224)
Q Consensus 91 ~~vvD~~d~~iG~~~R~~ 108 (224)
+.|+|++++++|..++..
T Consensus 85 ~~Vv~~~~~~~Gvi~~~~ 102 (106)
T cd04582 85 LPCVDEDGRYVGEVTQRS 102 (106)
T ss_pred eeEECCCCcEEEEEEHHH
Confidence 678999999999998753
No 118
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=23.95 E-value=1.1e+02 Score=21.53 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=19.8
Q ss_pred cHHHHHhhhcCeEEEEcCCCcEEEEEeccc
Q 027372 79 DAVQRRLMFEDECILVDENDRVVGHENKYN 108 (224)
Q Consensus 79 d~~q~~lm~eE~~~vvD~~d~~iG~~~R~~ 108 (224)
.+....+.......|+|++++++|..++..
T Consensus 77 ~~~~~~~~~~~~~~vv~~~~~~~Gvvt~~d 106 (110)
T cd04609 77 EELSELLDRGNVAVVVDEGGKFVGIITRAD 106 (110)
T ss_pred HHHHHHHHhCCceeEEecCCeEEEEEeHHH
Confidence 344433333334678899999999998764
No 119
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=23.57 E-value=1.4e+02 Score=24.14 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=20.3
Q ss_pred CCeeE-EEEEEEEEeCCCeEEEEEecCC
Q 027372 118 LNLLH-RAFSVFLFNSKYELLLQQRSGT 144 (224)
Q Consensus 118 ~gllH-ra~sv~lfn~~g~lLLqqRs~~ 144 (224)
+|.+| +.|+|+| |.++++.|.-++..
T Consensus 9 ~G~l~~k~Vsvyi-nk~~qVilKmKskh 35 (110)
T PF08458_consen 9 KGDLHWKTVSVYI-NKKGQVILKMKSKH 35 (110)
T ss_pred CCceEEEEEEEEE-CCCcEEEEEeecch
Confidence 57777 6778876 88899998877764
No 120
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=23.50 E-value=39 Score=32.19 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=25.4
Q ss_pred EEEEEEEEEeCCCeEEEEEecCCCCCCCCceeec
Q 027372 122 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNT 155 (224)
Q Consensus 122 Hra~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t 155 (224)
.+...+++.+.+|+++|.||...+. +-|+|+++
T Consensus 235 ~~~~~~~~~~~~~~~~l~kr~~~gl-~~gl~~fP 267 (342)
T COG1194 235 RRFAAFLILNRDGEVLLEKRPEKGL-LGGLWCFP 267 (342)
T ss_pred hheeeEEEEccCcchhhhhCcccCc-eecccccc
Confidence 3444556667889999999988764 78999998
No 121
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=22.98 E-value=1.3e+02 Score=21.56 Aligned_cols=20 Identities=15% Similarity=0.448 Sum_probs=16.4
Q ss_pred CeEEEEcCCCcEEEEEeccc
Q 027372 89 DECILVDENDRVVGHENKYN 108 (224)
Q Consensus 89 E~~~vvD~~d~~iG~~~R~~ 108 (224)
+.+.|+|++++++|..++..
T Consensus 73 ~~lpVv~~~~~~~Giit~~d 92 (96)
T cd04614 73 EQIPIINGNDKLIGLLRDHD 92 (96)
T ss_pred CeeeEECCCCcEEEEEEHHH
Confidence 34789999899999998754
No 122
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=22.58 E-value=1.4e+02 Score=21.80 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=22.5
Q ss_pred cccHHHHHhhhcC--eEEEEcCC---CcEEEEEeccc
Q 027372 77 GMDAVQRRLMFED--ECILVDEN---DRVVGHENKYN 108 (224)
Q Consensus 77 ~~d~~q~~lm~eE--~~~vvD~~---d~~iG~~~R~~ 108 (224)
.+.+....++... .+.|+|++ ++++|..++..
T Consensus 78 ~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~ 114 (118)
T cd04617 78 SVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTN 114 (118)
T ss_pred cHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhh
Confidence 3445556665543 58899987 68999998864
No 123
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=22.04 E-value=95 Score=22.59 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=16.3
Q ss_pred eEEEEcCCCcEEEEEeccc
Q 027372 90 ECILVDENDRVVGHENKYN 108 (224)
Q Consensus 90 ~~~vvD~~d~~iG~~~R~~ 108 (224)
.+.|+|++|+++|..++..
T Consensus 92 ~lpVvd~~~~~~Gvi~~~d 110 (114)
T cd04619 92 NIPVVDENARPLGVLNARD 110 (114)
T ss_pred eEEEECCCCcEEEEEEhHh
Confidence 4889999999999998863
No 124
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=21.89 E-value=1e+02 Score=29.39 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhCCCcc
Q 027372 175 VRNAAQRKLLDELGICAE 192 (224)
Q Consensus 175 ~~~AA~REL~EElGI~~~ 192 (224)
..+-|.||..||+|-+..
T Consensus 299 ~~e~a~~e~veecGYdlp 316 (405)
T KOG4432|consen 299 DPEKAARESVEECGYDLP 316 (405)
T ss_pred cHHHHHHHHHHHhCCCCC
Confidence 467889999999999863
No 125
>COG5428 Uncharacterized conserved small protein [Function unknown]
Probab=21.87 E-value=99 Score=23.09 Aligned_cols=26 Identities=42% Similarity=0.521 Sum_probs=18.7
Q ss_pred hhcCeEEEEcCCCcEEEEE-ecccccc
Q 027372 86 MFEDECILVDENDRVVGHE-NKYNCHL 111 (224)
Q Consensus 86 m~eE~~~vvD~~d~~iG~~-~R~~~Hl 111 (224)
|+++.++=+|++|+++|.. -+...|+
T Consensus 28 ~~edi~Idide~GkV~GiEi~~As~~l 54 (69)
T COG5428 28 LGEDILIDIDENGKVIGIEIWNASAHL 54 (69)
T ss_pred cCCcEEEEecCCCcEEEEEEEchhhhc
Confidence 3567788899999999974 4444443
No 126
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=21.61 E-value=78 Score=23.53 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=16.8
Q ss_pred CeEEEEcCCCcEEEEEeccccc
Q 027372 89 DECILVDENDRVVGHENKYNCH 110 (224)
Q Consensus 89 E~~~vvD~~d~~iG~~~R~~~H 110 (224)
..+-|+|++|+.+|..++..+-
T Consensus 13 ~~VrlI~~~g~~lGv~~~~eAl 34 (76)
T PF05198_consen 13 PEVRLIDEDGEQLGVMSLREAL 34 (76)
T ss_dssp SEEEEE-TTS-EEEEEEHHHHH
T ss_pred CEEEEECCCCcEeceEEHHHHH
Confidence 4688999999999999887654
No 127
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=20.76 E-value=1.7e+02 Score=20.97 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.1
Q ss_pred eEEEEcCCCcEEEEEeccc
Q 027372 90 ECILVDENDRVVGHENKYN 108 (224)
Q Consensus 90 ~~~vvD~~d~~iG~~~R~~ 108 (224)
.+.|+|++++++|..++..
T Consensus 91 ~~~Vv~~~~~~~Gvit~~d 109 (113)
T cd04607 91 HLPILDEEGRVVGLATLDD 109 (113)
T ss_pred EEEEECCCCCEEEEEEhHH
Confidence 4789999999999988764
No 128
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=20.66 E-value=1.2e+02 Score=21.40 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.6
Q ss_pred CeEEEEcCCCcEEEEEeccc
Q 027372 89 DECILVDENDRVVGHENKYN 108 (224)
Q Consensus 89 E~~~vvD~~d~~iG~~~R~~ 108 (224)
..+.|+|++|+++|..++..
T Consensus 86 ~~~~vv~~~g~~~Gvit~~~ 105 (109)
T cd04583 86 KYVPVVDEDGKLVGLITRSS 105 (109)
T ss_pred ceeeEECCCCeEEEEEehHH
Confidence 45788999999999988764
No 129
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=20.57 E-value=1.4e+02 Score=25.59 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=34.7
Q ss_pred EEEEEEeCCCeEEEEEecCCCCCCCCceeecCCccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 027372 125 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 193 (224)
Q Consensus 125 ~sv~lfn~~g~lLLqqRs~~K~tfPG~Wd~t~gGh~~~gEs~~~~~~~~g~~~AA~REL~EElGI~~~~ 193 (224)
+-++|+|.+|+++-..+.......|. .|+.+..-+ .+-.....+.+++.+++++...+
T Consensus 12 ~K~~l~d~~g~iv~~~~~~~~~~~~~------~g~~e~d~~-----~~~~~~~~~~~~~~~~~~~~~~~ 69 (245)
T PF00370_consen 12 VKAVLFDEDGKIVASASRPYPYYTPE------PGWAEQDPD-----EIWEAICEALKELLSQAGIDPEQ 69 (245)
T ss_dssp EEEEEEETTSCEEEEEEEEETEBCSS------TTEEEE-HH-----HHHHHHHHHHHHHHHHCTSCGGG
T ss_pred eEEEEEeCCCCEEEEEEEeeeecccc------ccccccChH-----HHHHHHHHHHHHHHhhcCcccce
Confidence 45678999999887766543322221 133222222 23336788899999999776654
No 130
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=20.42 E-value=85 Score=22.78 Aligned_cols=19 Identities=16% Similarity=0.457 Sum_probs=15.2
Q ss_pred CeEEEEcCCCcEEEEEecc
Q 027372 89 DECILVDENDRVVGHENKY 107 (224)
Q Consensus 89 E~~~vvD~~d~~iG~~~R~ 107 (224)
|.=.|+|.++++||++...
T Consensus 41 ~~G~I~d~~G~viGkae~~ 59 (64)
T PF12396_consen 41 EDGDILDKDGNVIGKAEPI 59 (64)
T ss_pred CCCCEECCCCCEEEEEEeC
Confidence 3456899999999998763
No 131
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=20.20 E-value=1.1e+02 Score=22.48 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=16.6
Q ss_pred CeEEEEcCCCcEEEEEeccc
Q 027372 89 DECILVDENDRVVGHENKYN 108 (224)
Q Consensus 89 E~~~vvD~~d~~iG~~~R~~ 108 (224)
+.+.|+|++|+++|..++..
T Consensus 97 ~~l~Vvd~~~~~~Givt~~d 116 (120)
T cd04641 97 HRLVVVDENKRVEGIISLSD 116 (120)
T ss_pred cEEEEECCCCCEEEEEEHHH
Confidence 35889999999999998864
Done!