Query 027373
Match_columns 224
No_of_seqs 240 out of 1133
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 08:59:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03041 GST_N_2GST_N GST_N fam 99.8 2.8E-20 6E-25 135.6 8.9 77 134-211 1-77 (77)
2 PF13417 GST_N_3: Glutathione 99.8 4.2E-18 9E-23 123.3 8.8 74 137-214 1-74 (75)
3 cd03059 GST_N_SspA GST_N famil 99.7 1.8E-17 4E-22 117.5 9.3 73 135-211 1-73 (73)
4 cd03045 GST_N_Delta_Epsilon GS 99.7 3.4E-17 7.3E-22 116.7 9.0 72 135-209 1-74 (74)
5 cd03040 GST_N_mPGES2 GST_N fam 99.7 1.1E-16 2.4E-21 115.4 9.9 75 134-212 1-77 (77)
6 cd03037 GST_N_GRX2 GST_N famil 99.7 7.2E-17 1.6E-21 114.9 8.6 71 135-209 1-71 (71)
7 cd03052 GST_N_GDAP1 GST_N fami 99.7 9.3E-17 2E-21 116.7 8.5 71 135-208 1-73 (73)
8 cd03048 GST_N_Ure2p_like GST_N 99.7 1.7E-16 3.7E-21 115.7 9.9 78 134-213 1-81 (81)
9 cd03058 GST_N_Tau GST_N family 99.7 1.3E-16 2.9E-21 114.4 9.2 73 135-211 1-74 (74)
10 cd03060 GST_N_Omega_like GST_N 99.7 1.3E-16 2.9E-21 113.9 9.0 69 136-207 2-70 (71)
11 cd03051 GST_N_GTT2_like GST_N 99.7 1.1E-16 2.5E-21 112.8 8.3 72 135-208 1-74 (74)
12 PRK09481 sspA stringent starva 99.7 1.1E-16 2.5E-21 135.7 9.3 77 134-214 10-86 (211)
13 cd03053 GST_N_Phi GST_N family 99.7 3.1E-16 6.8E-21 112.4 9.2 74 135-210 2-76 (76)
14 cd03056 GST_N_4 GST_N family, 99.7 3.2E-16 7E-21 110.6 8.6 71 135-208 1-73 (73)
15 cd03050 GST_N_Theta GST_N fami 99.7 5.2E-16 1.1E-20 111.8 9.4 74 135-211 1-76 (76)
16 cd03061 GST_N_CLIC GST_N famil 99.7 4.8E-16 1E-20 119.2 8.8 70 141-214 20-89 (91)
17 PRK15113 glutathione S-transfe 99.6 7E-16 1.5E-20 131.1 10.1 79 133-214 4-86 (214)
18 COG0625 Gst Glutathione S-tran 99.6 6.7E-16 1.4E-20 130.3 9.3 84 135-220 1-86 (211)
19 PRK11752 putative S-transferas 99.6 8.7E-16 1.9E-20 135.9 10.3 104 99-212 17-130 (264)
20 cd03044 GST_N_EF1Bgamma GST_N 99.6 9.8E-16 2.1E-20 110.7 8.6 73 136-209 2-74 (75)
21 cd03055 GST_N_Omega GST_N fami 99.6 1.5E-15 3.2E-20 113.8 9.9 74 132-208 16-89 (89)
22 cd03076 GST_N_Pi GST_N family, 99.6 1E-15 2.2E-20 110.4 7.5 73 134-210 1-73 (73)
23 cd03080 GST_N_Metaxin_like GST 99.6 1.9E-15 4E-20 109.4 8.9 68 134-212 1-75 (75)
24 cd03057 GST_N_Beta GST_N famil 99.6 2E-15 4.4E-20 108.8 9.0 75 135-212 1-77 (77)
25 PF13409 GST_N_2: Glutathione 99.6 1E-15 2.2E-20 110.1 7.1 68 142-210 1-70 (70)
26 cd03039 GST_N_Sigma_like GST_N 99.6 9.5E-16 2.1E-20 109.4 6.8 72 135-209 1-72 (72)
27 PRK10387 glutaredoxin 2; Provi 99.6 1.5E-15 3.3E-20 127.2 9.1 76 135-214 1-76 (210)
28 cd00570 GST_N_family Glutathio 99.6 2.9E-15 6.3E-20 101.8 8.8 71 135-208 1-71 (71)
29 cd03046 GST_N_GTT1_like GST_N 99.6 2.9E-15 6.4E-20 106.9 8.9 74 135-212 1-76 (76)
30 cd03049 GST_N_3 GST_N family, 99.6 2.2E-15 4.9E-20 107.5 8.3 71 135-208 1-73 (73)
31 cd03047 GST_N_2 GST_N family, 99.6 2.9E-15 6.3E-20 107.3 8.8 71 135-208 1-73 (73)
32 cd03038 GST_N_etherase_LigE GS 99.6 3.2E-15 7E-20 110.0 7.7 70 141-212 14-84 (84)
33 PLN02473 glutathione S-transfe 99.6 6.2E-15 1.3E-19 124.3 10.4 77 134-213 2-80 (214)
34 cd03042 GST_N_Zeta GST_N famil 99.6 5.6E-15 1.2E-19 104.5 8.3 71 135-208 1-73 (73)
35 PRK13972 GSH-dependent disulfi 99.6 1.1E-14 2.3E-19 123.5 9.4 77 134-212 1-84 (215)
36 TIGR02182 GRXB Glutaredoxin, G 99.6 1.4E-14 3.1E-19 123.4 9.0 75 136-214 1-75 (209)
37 KOG0868 Glutathione S-transfer 99.5 8.4E-15 1.8E-19 125.2 5.6 81 134-216 5-87 (217)
38 KOG0406 Glutathione S-transfer 99.5 3.9E-14 8.5E-19 124.9 9.5 77 133-213 8-85 (231)
39 cd03075 GST_N_Mu GST_N family, 99.5 5.2E-14 1.1E-18 104.3 8.0 74 136-211 2-82 (82)
40 PLN02378 glutathione S-transfe 99.5 5E-14 1.1E-18 120.2 8.6 72 139-214 16-87 (213)
41 cd03077 GST_N_Alpha GST_N fami 99.5 1.4E-13 3E-18 101.1 9.5 73 135-213 2-78 (79)
42 cd03054 GST_N_Metaxin GST_N fa 99.5 8.5E-14 1.8E-18 99.4 8.0 64 136-210 2-72 (72)
43 PRK10357 putative glutathione 99.5 6.4E-14 1.4E-18 117.1 8.0 76 135-213 1-76 (202)
44 TIGR01262 maiA maleylacetoacet 99.5 6.3E-14 1.4E-18 117.4 7.2 75 136-213 1-78 (210)
45 cd03043 GST_N_1 GST_N family, 99.5 1.7E-13 3.6E-18 99.1 8.3 67 140-208 7-73 (73)
46 TIGR02190 GlrX-dom Glutaredoxi 99.5 2.8E-13 6.1E-18 99.5 9.4 75 130-208 5-79 (79)
47 PLN02395 glutathione S-transfe 99.5 2.7E-13 5.8E-18 114.2 10.5 76 134-213 2-79 (215)
48 PRK10542 glutathionine S-trans 99.5 1E-13 2.2E-18 115.3 7.7 77 135-214 1-80 (201)
49 TIGR00862 O-ClC intracellular 99.5 1.7E-13 3.6E-18 120.9 9.4 71 140-214 16-86 (236)
50 cd03029 GRX_hybridPRX5 Glutare 99.4 1E-12 2.2E-17 94.2 9.4 71 134-208 2-72 (72)
51 PF02798 GST_N: Glutathione S- 99.4 7.7E-13 1.7E-17 96.4 8.6 72 136-209 2-76 (76)
52 PLN02817 glutathione dehydroge 99.4 7.2E-13 1.6E-17 118.3 8.4 71 140-214 70-140 (265)
53 PTZ00057 glutathione s-transfe 99.4 1.5E-12 3.2E-17 110.2 9.6 75 134-213 4-85 (205)
54 KOG0867 Glutathione S-transfer 99.4 1.6E-12 3.5E-17 113.1 9.0 76 134-212 2-79 (226)
55 PRK10638 glutaredoxin 3; Provi 99.3 8E-12 1.7E-16 92.2 8.8 72 134-208 3-74 (83)
56 COG2999 GrxB Glutaredoxin 2 [P 99.3 6.1E-12 1.3E-16 107.7 5.7 76 135-214 1-76 (215)
57 cd02066 GRX_family Glutaredoxi 99.2 6.2E-11 1.4E-15 81.7 8.6 70 134-206 1-70 (72)
58 COG0695 GrxC Glutaredoxin and 99.2 7.9E-11 1.7E-15 87.7 8.4 73 134-208 2-75 (80)
59 cd03027 GRX_DEP Glutaredoxin ( 99.2 8.4E-11 1.8E-15 84.5 8.3 69 134-205 2-70 (73)
60 PRK11200 grxA glutaredoxin 1; 99.2 1.4E-10 3E-15 85.8 9.2 76 134-212 2-84 (85)
61 cd03418 GRX_GRXb_1_3_like Glut 99.2 1.3E-10 2.8E-15 82.9 8.7 72 134-208 1-73 (75)
62 TIGR02183 GRXA Glutaredoxin, G 99.2 1.4E-10 3E-15 86.8 8.8 76 135-213 2-84 (86)
63 TIGR02196 GlrX_YruB Glutaredox 99.2 1.2E-10 2.5E-15 81.0 7.5 71 134-207 1-73 (74)
64 TIGR02200 GlrX_actino Glutared 99.2 2.5E-10 5.5E-15 80.9 8.7 73 134-208 1-76 (77)
65 PHA03050 glutaredoxin; Provisi 99.1 3.4E-10 7.3E-15 88.9 9.0 73 132-206 12-89 (108)
66 cd03079 GST_N_Metaxin2 GST_N f 99.1 2.2E-10 4.9E-15 84.8 7.0 65 134-210 10-74 (74)
67 cd03419 GRX_GRXh_1_2_like Glut 99.1 6.9E-10 1.5E-14 80.1 8.6 74 134-209 1-76 (82)
68 TIGR02189 GlrX-like_plant Glut 99.1 9.9E-10 2.2E-14 84.6 9.5 75 131-207 6-82 (99)
69 TIGR02181 GRX_bact Glutaredoxi 99.1 7.1E-10 1.5E-14 80.4 7.9 72 135-209 1-72 (79)
70 TIGR00365 monothiol glutaredox 99.1 9.2E-10 2E-14 84.5 9.0 75 131-208 10-89 (97)
71 PRK10329 glutaredoxin-like pro 99.1 1.1E-09 2.3E-14 81.7 8.5 74 134-209 2-75 (81)
72 cd02976 NrdH NrdH-redoxin (Nrd 99.0 1E-09 2.2E-14 76.1 7.2 63 134-199 1-63 (73)
73 cd03028 GRX_PICOT_like Glutare 99.0 1.9E-09 4.2E-14 81.2 9.0 73 132-207 7-84 (90)
74 PF00462 Glutaredoxin: Glutare 99.0 9.1E-10 2E-14 76.3 5.5 59 135-196 1-59 (60)
75 KOG4420 Uncharacterized conser 99.0 4.7E-10 1E-14 101.0 4.8 85 129-216 21-107 (325)
76 TIGR02180 GRX_euk Glutaredoxin 99.0 4.6E-09 1E-13 75.7 8.7 73 135-209 1-77 (84)
77 TIGR02194 GlrX_NrdH Glutaredox 99.0 2.9E-09 6.2E-14 76.5 7.5 54 135-190 1-54 (72)
78 KOG3029 Glutathione S-transfer 98.9 2.3E-09 5.1E-14 97.5 8.1 74 134-213 90-163 (370)
79 KOG1695 Glutathione S-transfer 98.9 7E-09 1.5E-13 90.3 8.4 75 134-212 3-77 (206)
80 PRK10824 glutaredoxin-4; Provi 98.8 4.3E-08 9.4E-13 78.3 8.4 74 131-207 13-91 (115)
81 cd03078 GST_N_Metaxin1_like GS 98.6 1.9E-07 4.2E-12 68.2 8.1 58 142-210 15-72 (73)
82 KOG1422 Intracellular Cl- chan 98.6 2.6E-07 5.5E-12 80.9 8.6 73 142-218 20-92 (221)
83 KOG1752 Glutaredoxin and relat 98.5 5.1E-07 1.1E-11 71.0 8.6 75 130-206 11-87 (104)
84 PTZ00062 glutaredoxin; Provisi 98.5 8E-07 1.7E-11 77.3 8.8 74 131-207 111-189 (204)
85 PRK12759 bifunctional gluaredo 98.4 9.8E-07 2.1E-11 83.5 8.9 69 134-205 3-79 (410)
86 cd03031 GRX_GRX_like Glutaredo 98.4 2.3E-06 4.9E-11 71.0 8.6 69 135-206 2-80 (147)
87 PLN02907 glutamate-tRNA ligase 98.1 5.5E-06 1.2E-10 83.8 7.8 64 135-214 3-66 (722)
88 cd02973 TRX_GRX_like Thioredox 98.1 1E-05 2.3E-10 56.4 6.6 59 134-199 2-65 (67)
89 cd03036 ArsC_like Arsenate Red 98.1 4.5E-06 9.8E-11 65.3 4.8 51 135-186 1-51 (111)
90 PRK01655 spxA transcriptional 97.9 2.8E-05 6E-10 62.9 6.0 36 134-169 1-36 (131)
91 cd02977 ArsC_family Arsenate R 97.9 2.3E-05 5.1E-10 60.1 5.3 46 135-181 1-46 (105)
92 KOG4244 Failed axon connection 97.8 6.5E-05 1.4E-09 68.0 7.3 72 133-215 44-122 (281)
93 cd03032 ArsC_Spx Arsenate Redu 97.8 4.7E-05 1E-09 59.7 5.6 36 134-169 1-36 (115)
94 TIGR01617 arsC_related transcr 97.7 7.3E-05 1.6E-09 58.8 4.9 35 135-169 1-35 (117)
95 PRK12559 transcriptional regul 97.6 0.00014 3.1E-09 58.9 6.3 36 134-169 1-36 (131)
96 PRK13344 spxA transcriptional 97.6 0.00016 3.4E-09 58.7 6.4 36 134-169 1-36 (132)
97 cd03035 ArsC_Yffb Arsenate Red 97.4 0.00037 8E-09 54.3 5.9 35 135-169 1-35 (105)
98 cd03033 ArsC_15kD Arsenate Red 97.3 0.00067 1.5E-08 53.7 6.2 35 135-169 2-36 (113)
99 cd03030 GRX_SH3BGR Glutaredoxi 97.3 0.002 4.4E-08 49.4 8.5 69 135-206 2-80 (92)
100 TIGR00412 redox_disulf_2 small 97.3 0.0018 3.8E-08 47.2 7.5 56 134-198 2-61 (76)
101 COG4545 Glutaredoxin-related p 97.2 0.0012 2.6E-08 49.7 5.9 61 136-198 5-77 (85)
102 PF10568 Tom37: Outer mitochon 97.0 0.0042 9.1E-08 45.6 7.8 57 142-208 13-72 (72)
103 TIGR00411 redox_disulf_1 small 97.0 0.0064 1.4E-07 43.2 8.0 71 134-209 2-80 (82)
104 cd01659 TRX_superfamily Thiore 97.0 0.0025 5.5E-08 40.2 5.3 54 135-190 1-59 (69)
105 TIGR01616 nitro_assoc nitrogen 96.9 0.0031 6.8E-08 50.9 6.4 36 134-169 2-37 (126)
106 COG1393 ArsC Arsenate reductas 96.9 0.0032 7E-08 50.3 6.3 36 134-169 2-37 (117)
107 PRK10853 putative reductase; P 96.8 0.0029 6.3E-08 50.4 5.3 36 134-169 1-36 (118)
108 PHA02125 thioredoxin-like prot 96.7 0.0097 2.1E-07 42.9 7.2 52 134-190 1-52 (75)
109 PF05768 DUF836: Glutaredoxin- 96.6 0.03 6.5E-07 41.2 9.5 51 134-190 1-55 (81)
110 PRK10026 arsenate reductase; P 96.6 0.0048 1E-07 51.0 5.7 35 134-168 3-37 (141)
111 cd03026 AhpF_NTD_C TRX-GRX-lik 96.6 0.0084 1.8E-07 45.2 6.5 58 134-198 15-77 (89)
112 cd03034 ArsC_ArsC Arsenate Red 96.5 0.0052 1.1E-07 48.2 5.3 35 135-169 1-35 (112)
113 TIGR00014 arsC arsenate reduct 96.5 0.0059 1.3E-07 48.0 5.3 36 135-170 1-36 (114)
114 COG0278 Glutaredoxin-related p 96.3 0.017 3.7E-07 45.6 7.0 73 131-206 13-91 (105)
115 PF13192 Thioredoxin_3: Thiore 96.0 0.058 1.2E-06 39.0 8.2 58 134-200 2-63 (76)
116 PF11287 DUF3088: Protein of u 95.4 0.078 1.7E-06 42.5 7.2 70 142-215 23-111 (112)
117 PF00085 Thioredoxin: Thioredo 94.9 0.33 7.2E-06 35.1 9.0 72 134-210 20-103 (103)
118 TIGR01295 PedC_BrcD bacterioci 94.9 0.16 3.4E-06 40.3 7.7 62 134-195 26-101 (122)
119 cd02947 TRX_family TRX family; 94.7 0.22 4.7E-06 34.5 7.3 57 134-195 13-74 (93)
120 PF03960 ArsC: ArsC family; I 94.7 0.054 1.2E-06 41.9 4.5 32 138-169 1-32 (110)
121 cd02975 PfPDO_like_N Pyrococcu 94.7 0.032 6.9E-07 43.4 3.2 52 134-190 24-81 (113)
122 TIGR02187 GlrX_arch Glutaredox 94.1 0.083 1.8E-06 45.3 4.9 71 134-209 136-214 (215)
123 cd02949 TRX_NTR TRX domain, no 93.9 0.36 7.8E-06 35.8 7.4 59 134-197 16-80 (97)
124 cd02993 PDI_a_APS_reductase PD 93.6 0.39 8.4E-06 36.5 7.2 52 134-188 24-82 (109)
125 PF04908 SH3BGR: SH3-binding, 92.9 0.62 1.3E-05 36.4 7.5 70 134-206 2-86 (99)
126 KOG0911 Glutaredoxin-related p 92.9 0.21 4.6E-06 44.5 5.4 73 132-207 138-215 (227)
127 KOG2903 Predicted glutathione 92.9 0.41 8.9E-06 44.0 7.2 89 133-221 36-165 (319)
128 PRK15317 alkyl hydroperoxide r 92.8 0.085 1.8E-06 51.0 3.1 72 134-212 119-199 (517)
129 cd02951 SoxW SoxW family; SoxW 92.7 0.66 1.4E-05 35.8 7.4 20 134-153 17-36 (125)
130 cd02950 TxlA TRX-like protein 92.3 2.3 4.9E-05 34.4 10.3 80 134-217 23-116 (142)
131 TIGR03143 AhpF_homolog putativ 92.2 0.58 1.3E-05 45.8 8.0 59 134-199 479-542 (555)
132 PF13098 Thioredoxin_2: Thiore 92.2 0.29 6.2E-06 36.7 4.6 23 133-155 7-29 (112)
133 cd02953 DsbDgamma DsbD gamma f 91.8 0.44 9.5E-06 35.5 5.2 54 134-188 14-76 (104)
134 TIGR03140 AhpF alkyl hydropero 91.7 0.12 2.6E-06 50.0 2.5 72 134-212 120-200 (515)
135 cd02959 ERp19 Endoplasmic reti 91.5 0.56 1.2E-05 36.7 5.7 60 134-197 22-90 (117)
136 cd02955 SSP411 TRX domain, SSP 91.4 0.87 1.9E-05 36.5 6.9 65 135-200 19-97 (124)
137 PTZ00051 thioredoxin; Provisio 91.1 1.4 3.1E-05 32.1 7.3 58 134-196 21-83 (98)
138 cd02996 PDI_a_ERp44 PDIa famil 91.0 1.3 2.8E-05 33.3 7.1 51 134-189 21-83 (108)
139 TIGR01068 thioredoxin thioredo 90.9 0.59 1.3E-05 33.6 5.0 72 134-210 17-100 (101)
140 TIGR01126 pdi_dom protein disu 90.4 0.76 1.7E-05 33.2 5.3 71 134-209 16-100 (102)
141 cd02984 TRX_PICOT TRX domain, 90.3 0.48 1E-05 34.4 4.1 60 134-196 17-80 (97)
142 PRK09381 trxA thioredoxin; Pro 90.1 3.6 7.7E-05 30.7 8.9 71 134-209 24-106 (109)
143 PHA02278 thioredoxin-like prot 90.0 1.8 4E-05 33.3 7.3 63 134-197 17-85 (103)
144 PRK13728 conjugal transfer pro 89.6 4 8.7E-05 35.1 9.8 60 135-194 73-148 (181)
145 TIGR02187 GlrX_arch Glutaredox 89.4 1.3 2.9E-05 37.9 6.8 77 133-212 21-112 (215)
146 PF09635 MetRS-N: MetRS-N bind 89.3 0.22 4.8E-06 40.5 1.7 34 180-213 31-64 (122)
147 cd02963 TRX_DnaJ TRX domain, D 89.2 0.7 1.5E-05 35.4 4.4 71 134-209 27-110 (111)
148 COG0435 ECM4 Predicted glutath 88.6 1.3 2.8E-05 41.1 6.4 80 133-212 50-158 (324)
149 cd02994 PDI_a_TMX PDIa family, 88.6 1.4 3E-05 32.4 5.5 70 134-208 19-100 (101)
150 cd02989 Phd_like_TxnDC9 Phosdu 88.5 0.55 1.2E-05 36.5 3.4 60 134-198 25-89 (113)
151 PRK10996 thioredoxin 2; Provis 88.4 4.8 0.0001 32.2 9.0 74 134-210 55-138 (139)
152 PRK10877 protein disulfide iso 88.2 1.3 2.8E-05 39.0 6.0 37 130-166 106-145 (232)
153 cd02997 PDI_a_PDIR PDIa family 87.8 3.4 7.4E-05 30.0 7.2 59 134-195 20-86 (104)
154 PRK11657 dsbG disulfide isomer 87.4 1.5 3.2E-05 39.0 6.0 36 131-166 117-156 (251)
155 cd02985 TRX_CDSP32 TRX family, 87.3 3.7 8E-05 30.9 7.3 62 134-197 18-84 (103)
156 cd03000 PDI_a_TMX3 PDIa family 86.7 1.2 2.5E-05 33.4 4.2 71 134-209 18-102 (104)
157 cd03020 DsbA_DsbC_DsbG DsbA fa 86.4 1.6 3.5E-05 36.7 5.4 37 131-167 77-115 (197)
158 cd02948 TRX_NDPK TRX domain, T 86.1 1.7 3.6E-05 32.7 4.8 57 134-196 20-83 (102)
159 PF04134 DUF393: Protein of un 85.6 4.1 8.8E-05 31.0 6.8 68 137-209 1-76 (114)
160 cd02952 TRP14_like Human TRX-r 85.3 3.9 8.5E-05 32.7 6.8 60 141-201 38-107 (119)
161 cd02961 PDI_a_family Protein D 85.2 1.3 2.9E-05 31.2 3.7 53 133-188 17-75 (101)
162 PTZ00443 Thioredoxin domain-co 84.9 2.7 5.9E-05 37.1 6.2 77 134-213 55-141 (224)
163 PRK03147 thiol-disulfide oxido 84.7 7.1 0.00015 31.3 8.2 20 135-154 65-84 (173)
164 cd03006 PDI_a_EFP1_N PDIa fami 84.5 4.6 0.0001 31.7 6.8 51 134-188 32-88 (113)
165 cd02954 DIM1 Dim1 family; Dim1 84.4 1.4 2.9E-05 35.2 3.7 52 135-189 18-73 (114)
166 cd03004 PDI_a_ERdj5_C PDIa fam 84.2 5 0.00011 29.6 6.6 50 134-188 22-77 (104)
167 cd02957 Phd_like Phosducin (Ph 83.1 1.4 3.1E-05 33.7 3.3 59 134-198 27-90 (113)
168 COG3011 Predicted thiol-disulf 82.8 11 0.00023 31.3 8.5 74 135-210 10-86 (137)
169 KOG3027 Mitochondrial outer me 82.7 2.9 6.3E-05 37.4 5.4 64 134-210 28-91 (257)
170 cd03009 TryX_like_TryX_NRX Try 82.6 4.3 9.4E-05 31.3 5.9 20 135-154 22-41 (131)
171 KOG2501 Thioredoxin, nucleored 82.0 4.2 9.1E-05 34.4 5.9 36 133-168 34-77 (157)
172 cd03008 TryX_like_RdCVF Trypar 81.4 8 0.00017 31.9 7.3 22 134-155 27-49 (146)
173 cd03002 PDI_a_MPD1_like PDI fa 81.1 8 0.00017 28.5 6.7 52 134-188 21-78 (109)
174 PRK00293 dipZ thiol:disulfide 81.0 9.7 0.00021 37.9 9.0 73 135-209 478-568 (571)
175 TIGR02740 TraF-like TraF-like 81.0 7.2 0.00016 35.2 7.5 60 134-194 169-241 (271)
176 cd02972 DsbA_family DsbA famil 81.0 2.1 4.5E-05 30.0 3.3 34 135-168 1-40 (98)
177 TIGR02661 MauD methylamine deh 80.5 6.7 0.00014 33.0 6.7 30 135-164 78-111 (189)
178 cd02999 PDI_a_ERp44_like PDIa 80.3 1.6 3.4E-05 33.0 2.6 51 134-188 21-76 (100)
179 TIGR02738 TrbB type-F conjugat 80.3 11 0.00025 31.1 7.9 34 134-167 53-90 (153)
180 KOG2824 Glutaredoxin-related p 80.3 6.9 0.00015 36.0 7.1 75 129-206 127-211 (281)
181 cd02956 ybbN ybbN protein fami 79.7 3.4 7.4E-05 29.9 4.2 60 134-196 15-78 (96)
182 PF08534 Redoxin: Redoxin; In 79.5 5.1 0.00011 31.4 5.4 47 142-191 40-93 (146)
183 cd02995 PDI_a_PDI_a'_C PDIa fa 78.7 2.3 4.9E-05 30.9 3.0 23 134-156 21-43 (104)
184 cd03003 PDI_a_ERdj5_N PDIa fam 77.9 3.2 7E-05 30.6 3.6 56 134-195 21-83 (101)
185 TIGR01130 ER_PDI_fam protein d 77.6 13 0.00029 34.3 8.3 75 134-213 21-111 (462)
186 cd03023 DsbA_Com1_like DsbA fa 77.1 3.4 7.5E-05 31.9 3.7 34 134-167 8-46 (154)
187 cd03005 PDI_a_ERp46 PDIa famil 76.7 2.7 5.9E-05 30.5 2.9 50 134-188 19-77 (102)
188 PLN02309 5'-adenylylsulfate re 76.2 18 0.00039 35.3 9.1 73 134-209 368-455 (457)
189 TIGR00424 APS_reduc 5'-adenyly 76.0 14 0.00029 36.3 8.2 73 134-209 374-461 (463)
190 PF06110 DUF953: Eukaryotic pr 75.9 12 0.00027 30.0 6.7 62 141-202 36-107 (119)
191 PRK15412 thiol:disulfide inter 75.5 13 0.00029 31.0 7.1 32 135-166 72-106 (185)
192 cd02966 TlpA_like_family TlpA- 75.3 6.6 0.00014 27.9 4.6 23 134-156 22-44 (116)
193 cd02998 PDI_a_ERp38 PDIa famil 75.1 4.1 8.9E-05 29.5 3.5 54 134-189 21-80 (105)
194 smart00594 UAS UAS domain. 74.9 21 0.00045 27.8 7.7 61 134-195 30-99 (122)
195 PHA03075 glutaredoxin-like pro 74.8 4.3 9.3E-05 33.0 3.7 33 133-165 3-35 (123)
196 cd02970 PRX_like2 Peroxiredoxi 74.7 9.8 0.00021 29.4 5.8 56 134-191 25-88 (149)
197 PF13728 TraF: F plasmid trans 73.8 17 0.00038 31.6 7.6 60 134-194 123-195 (215)
198 PTZ00102 disulphide isomerase; 72.9 23 0.0005 33.2 8.8 76 133-213 51-140 (477)
199 cd03001 PDI_a_P5 PDIa family, 72.7 4.1 8.9E-05 29.6 3.0 50 134-188 21-76 (103)
200 cd02967 mauD Methylamine utili 72.7 6.5 0.00014 29.2 4.2 54 135-189 25-83 (114)
201 KOG0907 Thioredoxin [Posttrans 72.0 14 0.0003 28.8 6.0 65 130-199 19-89 (106)
202 cd02987 Phd_like_Phd Phosducin 71.8 5.6 0.00012 33.5 3.9 59 135-197 87-148 (175)
203 PF01323 DSBA: DSBA-like thior 71.1 7.5 0.00016 31.6 4.5 34 135-168 2-40 (193)
204 cd02962 TMX2 TMX2 family; comp 70.8 6.1 0.00013 32.7 3.9 60 135-198 51-122 (152)
205 PF14595 Thioredoxin_9: Thiore 70.8 1.9 4.1E-05 34.7 0.9 61 134-196 44-110 (129)
206 cd02965 HyaE HyaE family; HyaE 70.3 6 0.00013 31.4 3.6 67 130-199 26-98 (111)
207 cd03019 DsbA_DsbA DsbA family, 70.1 6 0.00013 31.7 3.7 35 133-167 17-57 (178)
208 cd02958 UAS UAS family; UAS is 69.6 22 0.00048 27.0 6.6 74 135-209 21-109 (114)
209 TIGR00385 dsbE periplasmic pro 69.4 15 0.00033 30.1 6.0 22 135-156 67-88 (173)
210 PF00578 AhpC-TSA: AhpC/TSA fa 68.9 12 0.00027 27.9 5.0 49 141-191 36-90 (124)
211 cd03010 TlpA_like_DsbE TlpA-li 67.3 29 0.00062 26.4 6.8 22 135-156 29-50 (127)
212 cd03011 TlpA_like_ScsD_MtbDsbE 66.9 17 0.00037 27.3 5.4 23 134-156 23-45 (123)
213 TIGR02739 TraF type-F conjugat 66.3 29 0.00063 31.4 7.6 62 133-195 152-226 (256)
214 PF13462 Thioredoxin_4: Thiore 65.5 7.5 0.00016 30.5 3.3 36 133-168 14-57 (162)
215 cd02971 PRX_family Peroxiredox 65.2 17 0.00038 27.8 5.2 58 133-191 23-88 (140)
216 KOG3028 Translocase of outer m 64.9 36 0.00078 31.9 8.0 58 142-209 16-73 (313)
217 cd02964 TryX_like_family Trypa 64.0 10 0.00022 29.5 3.8 20 135-154 21-40 (132)
218 cd03065 PDI_b_Calsequestrin_N 63.8 37 0.00081 27.0 7.0 72 134-210 29-118 (120)
219 COG2143 Thioredoxin-related pr 62.4 45 0.00098 28.8 7.5 81 130-210 41-151 (182)
220 cd02992 PDI_a_QSOX PDIa family 61.9 22 0.00048 27.3 5.3 52 134-188 22-82 (114)
221 PTZ00102 disulphide isomerase; 61.1 18 0.00039 33.9 5.5 74 134-212 378-466 (477)
222 KOG0910 Thioredoxin-like prote 60.8 11 0.00023 31.8 3.5 60 134-197 64-128 (150)
223 KOG0190 Protein disulfide isom 60.7 33 0.00071 34.0 7.3 78 134-215 45-136 (493)
224 PTZ00056 glutathione peroxidas 59.9 18 0.00038 30.9 4.8 72 135-210 43-128 (199)
225 COG3019 Predicted metal-bindin 58.9 22 0.00048 29.9 4.9 68 134-211 27-104 (149)
226 KOG3425 Uncharacterized conser 58.6 20 0.00043 29.4 4.6 70 141-210 43-122 (128)
227 cd03021 DsbA_GSTK DsbA family, 58.4 14 0.00031 31.2 4.0 33 134-166 2-38 (209)
228 cd03024 DsbA_FrnE DsbA family, 57.9 12 0.00027 30.7 3.4 31 135-165 1-39 (201)
229 PRK13703 conjugal pilus assemb 57.4 28 0.0006 31.4 5.8 62 133-195 145-219 (248)
230 cd03022 DsbA_HCCA_Iso DsbA fam 55.8 16 0.00036 29.6 3.8 31 135-165 1-35 (192)
231 cd02986 DLP Dim1 family, Dim1- 55.6 16 0.00034 29.3 3.5 51 135-188 18-72 (114)
232 PTZ00062 glutaredoxin; Provisi 55.6 57 0.0012 28.4 7.3 68 135-213 21-96 (204)
233 cd03018 PRX_AhpE_like Peroxire 54.3 34 0.00074 26.5 5.3 56 133-190 29-92 (149)
234 cd03017 PRX_BCP Peroxiredoxin 54.2 37 0.00079 26.0 5.4 55 133-191 24-88 (140)
235 PRK09437 bcp thioredoxin-depen 53.3 28 0.0006 27.6 4.6 54 134-191 32-95 (154)
236 PTZ00256 glutathione peroxidas 52.6 33 0.00072 28.5 5.2 72 136-212 46-133 (183)
237 cd02960 AGR Anterior Gradient 50.4 16 0.00035 29.8 2.9 23 130-152 22-44 (130)
238 cd03015 PRX_Typ2cys Peroxiredo 49.6 27 0.00058 28.5 4.1 22 133-154 30-53 (173)
239 COG0526 TrxA Thiol-disulfide i 48.6 16 0.00036 25.1 2.4 18 140-157 41-58 (127)
240 cd02988 Phd_like_VIAF Phosduci 48.6 48 0.001 28.4 5.6 56 135-196 106-164 (192)
241 PLN02399 phospholipid hydroper 48.3 50 0.0011 29.4 5.9 32 135-166 103-141 (236)
242 PLN00410 U5 snRNP protein, DIM 46.7 78 0.0017 26.1 6.4 23 135-157 27-49 (142)
243 cd02982 PDI_b'_family Protein 45.5 29 0.00062 25.2 3.3 53 134-189 15-73 (103)
244 PRK10382 alkyl hydroperoxide r 45.2 41 0.00088 28.6 4.7 16 134-149 33-50 (187)
245 PF13899 Thioredoxin_7: Thiore 44.9 22 0.00048 25.4 2.6 20 134-153 20-39 (82)
246 cd03025 DsbA_FrnE_like DsbA fa 44.5 38 0.00083 27.5 4.3 31 134-164 2-38 (193)
247 COG5494 Predicted thioredoxin/ 44.3 59 0.0013 29.4 5.6 60 132-196 10-69 (265)
248 PF06053 DUF929: Domain of unk 43.4 18 0.0004 32.7 2.4 23 134-156 61-83 (249)
249 PRK00522 tpx lipid hydroperoxi 42.6 61 0.0013 26.5 5.2 57 134-191 46-108 (167)
250 cd02969 PRX_like1 Peroxiredoxi 42.0 77 0.0017 25.6 5.7 22 135-156 29-50 (171)
251 KOG0191 Thioredoxin/protein di 41.5 56 0.0012 30.4 5.4 78 134-214 165-255 (383)
252 cd03016 PRX_1cys Peroxiredoxin 41.1 42 0.00092 28.5 4.1 22 133-154 26-49 (203)
253 TIGR01626 ytfJ_HI0045 conserve 39.9 64 0.0014 27.7 5.0 44 134-177 60-114 (184)
254 cd05564 PTS_IIB_chitobiose_lic 39.4 60 0.0013 24.5 4.3 64 144-207 14-94 (96)
255 PLN02412 probable glutathione 39.0 64 0.0014 26.5 4.8 21 134-154 31-52 (167)
256 cd00340 GSH_Peroxidase Glutath 39.0 52 0.0011 26.2 4.2 20 135-155 26-45 (152)
257 TIGR03137 AhpC peroxiredoxin. 37.7 59 0.0013 27.2 4.5 18 133-150 32-51 (187)
258 cd03014 PRX_Atyp2cys Peroxired 36.6 80 0.0017 24.4 4.8 57 134-191 28-90 (143)
259 cd05295 MDH_like Malate dehydr 36.1 71 0.0015 31.3 5.3 75 141-215 2-89 (452)
260 TIGR00216 ispH_lytB (E)-4-hydr 35.9 1.7E+02 0.0037 26.8 7.5 83 133-218 87-187 (280)
261 PF13905 Thioredoxin_8: Thiore 35.6 47 0.001 23.7 3.1 32 136-167 6-43 (95)
262 cd04911 ACT_AKiii-YclM-BS_1 AC 35.6 38 0.00082 25.2 2.6 22 144-165 16-37 (76)
263 cd03007 PDI_a_ERp29_N PDIa fam 34.5 2.2E+02 0.0047 22.7 7.0 76 134-210 21-115 (116)
264 PRK13599 putative peroxiredoxi 34.5 84 0.0018 27.3 5.0 17 134-150 30-48 (215)
265 cd02968 SCO SCO (an acronym fo 33.9 94 0.002 23.7 4.8 21 135-155 26-47 (142)
266 COG2761 FrnE Predicted dithiol 33.1 56 0.0012 29.2 3.7 24 134-157 7-34 (225)
267 COG1154 Dxs Deoxyxylulose-5-ph 33.0 1.8E+02 0.0039 29.9 7.6 70 140-211 510-580 (627)
268 PF03190 Thioredox_DsbH: Prote 32.9 1.4E+02 0.0031 25.3 6.0 63 135-198 41-117 (163)
269 cd03013 PRX5_like Peroxiredoxi 31.2 97 0.0021 25.1 4.6 57 133-191 30-98 (155)
270 PF09413 DUF2007: Domain of un 30.2 53 0.0011 22.7 2.5 33 135-167 1-33 (67)
271 TIGR02540 gpx7 putative glutat 28.1 1.2E+02 0.0026 24.1 4.6 21 135-155 26-46 (153)
272 PRK14018 trifunctional thiored 27.9 1.3E+02 0.0029 29.9 5.8 20 137-156 62-81 (521)
273 PF11823 DUF3343: Protein of u 27.7 1.2E+02 0.0027 21.5 4.2 33 136-168 4-36 (73)
274 cd05565 PTS_IIB_lactose PTS_II 25.8 84 0.0018 24.3 3.2 62 145-206 16-96 (99)
275 COG3118 Thioredoxin domain-con 25.7 1.3E+02 0.0029 28.1 5.0 75 134-213 46-132 (304)
276 PRK15000 peroxidase; Provision 24.8 1.6E+02 0.0036 25.0 5.1 22 133-154 35-58 (200)
277 COG1225 Bcp Peroxiredoxin [Pos 24.7 2.4E+02 0.0053 23.7 6.0 57 134-191 32-95 (157)
278 PRK13191 putative peroxiredoxi 24.6 1.4E+02 0.0031 25.7 4.8 21 134-154 35-57 (215)
279 PF09868 DUF2095: Uncharacteri 24.5 29 0.00063 28.4 0.4 67 144-210 23-90 (128)
280 COG0320 LipA Lipoate synthase 24.5 1.5E+02 0.0033 27.7 5.0 44 147-190 103-156 (306)
281 PF09098 Dehyd-heme_bind: Quin 24.2 66 0.0014 27.6 2.5 26 199-224 55-83 (167)
282 PF00731 AIRC: AIR carboxylase 24.0 1.4E+02 0.003 25.0 4.4 25 143-167 13-37 (150)
283 KOG0912 Thiol-disulfide isomer 23.9 1.6E+02 0.0035 28.1 5.2 71 135-211 17-106 (375)
284 KOG4277 Uncharacterized conser 22.8 1.7E+02 0.0038 27.9 5.2 75 135-210 47-131 (468)
285 PRK09266 hypothetical protein; 22.5 1.5E+02 0.0032 26.1 4.5 65 147-213 195-260 (266)
286 PF03884 DUF329: Domain of unk 22.4 34 0.00074 24.3 0.4 44 10-53 10-53 (57)
287 PTZ00137 2-Cys peroxiredoxin; 21.3 2E+02 0.0044 26.0 5.2 16 133-148 99-116 (261)
288 PTZ00253 tryparedoxin peroxida 20.4 1.4E+02 0.0031 25.0 3.8 33 134-166 38-79 (199)
289 cd03012 TlpA_like_DipZ_like Tl 20.1 1E+02 0.0023 23.4 2.7 53 137-191 29-93 (126)
No 1
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.83 E-value=2.8e-20 Score=135.60 Aligned_cols=77 Identities=58% Similarity=1.106 Sum_probs=67.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHh
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y 211 (224)
+++||+++.||||++|+++|.++||+|+.+++..+.....+ +.++||.++||+|++.++|..|+||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~-~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDK-FLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHH-HHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 48999999999999999999999999999999765433445 457999999999998656799999999999999986
No 2
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.75 E-value=4.2e-18 Score=123.33 Aligned_cols=74 Identities=28% Similarity=0.549 Sum_probs=66.5
Q ss_pred EEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhCCC
Q 027373 137 LFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (224)
Q Consensus 137 LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~~~ 214 (224)
||++.+||||+|||++|.++||+|+.++++..+ + ++.+.+++|.++||+|++ +|..|+||.+|++||+++|+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~-~-~~~~~~~~p~~~vPvL~~--~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE-K-RPEFLKLNPKGKVPVLVD--DGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS-T-SHHHHHHSTTSBSSEEEE--TTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc-c-hhHHHhhcccccceEEEE--CCEEEeCHHHHHHHHHHHcCCC
Confidence 799999999999999999999999999998654 2 444567999999999997 6999999999999999999864
No 3
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.73 E-value=1.8e-17 Score=117.53 Aligned_cols=73 Identities=25% Similarity=0.414 Sum_probs=64.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHh
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y 211 (224)
|+||+++.||+|++++++|+++||+|+.++++... ..++ +++++|.++||+|++ +|..|+||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~-~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDN-PPED-LAELNPYGTVPTLVD--RDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCC-CCHH-HHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 58999999999999999999999999999987652 3344 557999999999987 5789999999999999986
No 4
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.72 E-value=3.4e-17 Score=116.66 Aligned_cols=72 Identities=26% Similarity=0.455 Sum_probs=62.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCC--CCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k--~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e 209 (224)
++||+++.||+|++++++|+++||+|+.+.++. +++..++ +++++|.++||+|++ +|..|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~-~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPE-FLKLNPQHTVPTLVD--NGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHH-HHhhCcCCCCCEEEE--CCEEEEcHHHHHHHHhC
Confidence 589999999999999999999999999998864 3333445 557999999999998 58999999999999974
No 5
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.70 E-value=1.1e-16 Score=115.45 Aligned_cols=75 Identities=24% Similarity=0.493 Sum_probs=63.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCC--CCeEeecHHHHHHHHHHHh
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPN--TGVSMYESGDIVNYLFQQY 211 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpn--dG~~L~ES~aIi~YL~e~y 211 (224)
+++||+++.||||++||.+|.++||+|+.++++... .+.+ +.+|.++||+|++++ +|..|+||.+|++||+++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~---~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS---RKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh---HHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 489999999999999999999999999999885431 2234 469999999998742 4789999999999999975
Q ss_pred C
Q 027373 212 G 212 (224)
Q Consensus 212 ~ 212 (224)
|
T Consensus 77 ~ 77 (77)
T cd03040 77 G 77 (77)
T ss_pred C
Confidence 4
No 6
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.70 E-value=7.2e-17 Score=114.93 Aligned_cols=71 Identities=30% Similarity=0.506 Sum_probs=61.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e 209 (224)
|+||+++.||||++||++|.++||+|+.+.++... ....+ +.+|.++||+|+++ +|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~--~~~~~-~~~~~~~vP~L~~~-~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD--EATPI-RMIGAKQVPILEKD-DGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc--hHHHH-HhcCCCccCEEEeC-CCeEeehHHHHHHHHhC
Confidence 57999999999999999999999999999887543 22334 57899999999873 58999999999999974
No 7
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.69 E-value=9.3e-17 Score=116.66 Aligned_cols=71 Identities=23% Similarity=0.316 Sum_probs=61.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCC--CCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k--~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~ 208 (224)
++||+++.||+|++||++|+|+|++|+.+.++. ++++.++ +.++||.++||+|++ +|..|+||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~-~~~inP~g~vP~L~~--~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPW-FMRLNPTGEVPVLIH--GDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHH-HHHhCcCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 479999999999999999999999999998765 3334445 557999999999998 7899999999999995
No 8
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.69 E-value=1.7e-16 Score=115.69 Aligned_cols=78 Identities=28% Similarity=0.516 Sum_probs=65.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCC--CCccCHHHHHHhCCCCcccEEEeCC-CCeEeecHHHHHHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPN-TGVSMYESGDIVNYLFQQ 210 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k--~~~~~~e~lk~l~p~~qVP~LvDpn-dG~~L~ES~aIi~YL~e~ 210 (224)
+++||+++. |+|++|+++|+++||+|+.+.++. +....++ +++++|.++||+|++++ +|..|+||.+|++||+++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~-~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~ 78 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPE-FLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEK 78 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHH-HHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHH
Confidence 489999985 999999999999999999988874 3334445 55799999999999842 289999999999999999
Q ss_pred hCC
Q 027373 211 YGK 213 (224)
Q Consensus 211 y~~ 213 (224)
|+.
T Consensus 79 ~~~ 81 (81)
T cd03048 79 YDK 81 (81)
T ss_pred hCC
Confidence 963
No 9
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.69 E-value=1.3e-16 Score=114.40 Aligned_cols=73 Identities=25% Similarity=0.308 Sum_probs=63.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCC-CcccEEEeCCCCeEeecHHHHHHHHHHHh
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGK-EQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~-~qVP~LvDpndG~~L~ES~aIi~YL~e~y 211 (224)
|+||++..||+|+++|++|+++||+|+.++++.. .+..+ +++++|. ++||+|++ +|..++||.+|++||+++|
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~-~~~~~p~~~~vP~l~~--~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG-NKSEL-LLASNPVHKKIPVLLH--NGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHH-HHHhCCCCCCCCEEEE--CCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999999887654 23344 4578995 99999998 5899999999999999875
No 10
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.69 E-value=1.3e-16 Score=113.94 Aligned_cols=69 Identities=26% Similarity=0.411 Sum_probs=60.8
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHH
Q 027373 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 207 (224)
Q Consensus 136 ~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL 207 (224)
+||++.+||||++|+++|+++|++|+.++++... ..++ ++++||.++||+|+++ ||..|+||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~-~~~~-~~~~np~~~vP~L~~~-~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKN-KPAE-MLAASPKGTVPVLVLG-NGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCC-CCHH-HHHHCCCCCCCEEEEC-CCcEEecHHHHHHhh
Confidence 7999999999999999999999999999987653 3344 5579999999999874 689999999999996
No 11
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.69 E-value=1.1e-16 Score=112.78 Aligned_cols=72 Identities=26% Similarity=0.317 Sum_probs=61.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCC--CCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k--~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~ 208 (224)
|+||+++.||+|+++|++|.++||+|+.+.++. ++....+ +.+++|.++||+|+++ +|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~-~~~~~p~~~vP~l~~~-~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPE-FLAKNPAGTVPVLELD-DGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHH-HHhhCCCCCCCEEEeC-CCCEEecHHHHHHHhC
Confidence 589999999999999999999999999988864 2233444 5579999999999854 6889999999999985
No 12
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.68 E-value=1.1e-16 Score=135.67 Aligned_cols=77 Identities=25% Similarity=0.377 Sum_probs=68.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhCC
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGK 213 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~~ 213 (224)
+|+||++..||+|++|+++|+|+||+|+.+.++... ..+++ +++||.++||+|+| +|..|+||.||++||+++|+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~-~~~nP~g~VPvL~~--~g~~l~ES~AIl~YL~~~~~~ 85 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDN-LPQDL-IDLNPYQSVPTLVD--RELTLYESRIIMEYLDERFPH 85 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCccc-CCHHH-HHhCCCCCCCEEEE--CCEEeeCHHHHHHHHHHhCCC
Confidence 599999999999999999999999999999998643 34454 57999999999998 689999999999999999985
Q ss_pred C
Q 027373 214 G 214 (224)
Q Consensus 214 ~ 214 (224)
.
T Consensus 86 ~ 86 (211)
T PRK09481 86 P 86 (211)
T ss_pred C
Confidence 3
No 13
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.67 E-value=3.1e-16 Score=112.38 Aligned_cols=74 Identities=23% Similarity=0.281 Sum_probs=63.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCC-ccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~-~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~ 210 (224)
|+||.++.||+|+++|++|+++|++|+.+.++... +...+.+++++|.++||+|++ +|..|+||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~--~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALED--GDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHhhC
Confidence 78999999999999999999999999998886532 122344567999999999998 589999999999999863
No 14
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.67 E-value=3.2e-16 Score=110.64 Aligned_cols=71 Identities=27% Similarity=0.367 Sum_probs=61.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCC--CCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k--~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~ 208 (224)
++||+++.||+|++++++|+++|++|+.++++. +++...+ +.+++|.++||+|++ +|..|+||.+|++||.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~-~~~~~p~~~vP~l~~--~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPE-FLALNPNGEVPVLEL--DGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHH-HHHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 589999999999999999999999999998864 3334444 557999999999998 5899999999999984
No 15
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.66 E-value=5.2e-16 Score=111.82 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=64.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCC--CccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHh
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~--~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y 211 (224)
++||++..|++|++|+++|+++|++|+.+.++.. +...++ +.+++|.++||+|++ +|..|+||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~-~~~~~p~~~vP~L~~--~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPE-FKKINPFGKVPAIVD--GDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHH-HHHhCcCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 5799999999999999999999999999988653 223344 557999999999997 5889999999999999986
No 16
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.65 E-value=4.8e-16 Score=119.20 Aligned_cols=70 Identities=21% Similarity=0.337 Sum_probs=61.9
Q ss_pred CCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhCCC
Q 027373 141 EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (224)
Q Consensus 141 e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~~~ 214 (224)
..||||++||++|.+|||+|+.++++... + ++++.++||.++||+|+| +|.+++||.+|++||+++|..+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~-~-p~~~~~~nP~g~vPvL~~--~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKR-K-PEDLKDLAPGTQPPFLLY--NGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCC-C-CHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHHccCC
Confidence 46999999999999999999999998763 2 355668999999999998 6899999999999999999764
No 17
>PRK15113 glutathione S-transferase; Provisional
Probab=99.65 E-value=7e-16 Score=131.09 Aligned_cols=79 Identities=18% Similarity=0.242 Sum_probs=68.1
Q ss_pred CcEEEEEcC--CChhHHHHHHHHHHcCCCcEEEEcCC--CCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHH
Q 027373 133 TRLQLFEFE--ACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (224)
Q Consensus 133 ~~L~LYs~e--~cPfCrrVR~~L~ElgIpye~i~V~k--~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~ 208 (224)
.+++||+.. .||+|++|+++|.|+||+|+.+.++. +++..+++ +++||.++||+|+| +|..|+||.+|++||+
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~-~~~nP~g~VP~L~~--~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTY-QGYSLTRRVPTLQH--DDFELSESSAIAEYLE 80 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHH-HhcCCCCCCCEEEE--CCEEEecHHHHHHHHH
Confidence 368999975 69999999999999999999998875 33344555 47999999999998 6899999999999999
Q ss_pred HHhCCC
Q 027373 209 QQYGKG 214 (224)
Q Consensus 209 e~y~~~ 214 (224)
++|+..
T Consensus 81 ~~~~~~ 86 (214)
T PRK15113 81 ERFAPP 86 (214)
T ss_pred HHcCCC
Confidence 999853
No 18
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=6.7e-16 Score=130.33 Aligned_cols=84 Identities=26% Similarity=0.434 Sum_probs=71.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCC-ccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhCC
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGK 213 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~-~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~~ 213 (224)
++||+...||||++|+++|.|+||+|+.+.++... ...+++ .++||.++||+|+++ +|.+|+||.+|++||+++|+.
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~-~~~nP~gkVPvL~~~-~~~~l~ES~AI~~YL~~~~~~ 78 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDF-LALNPLGKVPALVDD-DGEVLTESGAILEYLAERYPG 78 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHH-HhcCCCCCCCEEeeC-CCCeeecHHHHHHHHHhhCCC
Confidence 57999999999999999999999999999998764 444554 579999999999985 455999999999999999997
Q ss_pred C-CCCCCC
Q 027373 214 G-RSPSTG 220 (224)
Q Consensus 214 ~-~~p~~g 220 (224)
+ ..|.-+
T Consensus 79 ~~l~p~~~ 86 (211)
T COG0625 79 PPLLPADP 86 (211)
T ss_pred CCcCCCCc
Confidence 7 555433
No 19
>PRK11752 putative S-transferase; Provisional
Probab=99.64 E-value=8.7e-16 Score=135.92 Aligned_cols=104 Identities=20% Similarity=0.349 Sum_probs=84.6
Q ss_pred HHHhHhhhccccccccccccCCCCccccCCCCCCCcEEEEEcCCChhHHHHHHHHHHc------CCCcEEEEcCC--CCc
Q 027373 99 VATSSLSTLARLPWGSRSLSEGSDTQEISNSDSPTRLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPK--GSI 170 (224)
Q Consensus 99 ~~~a~las~~R~~~G~~~~~~~~~~~~~~~~~pe~~L~LYs~e~cPfCrrVR~~L~El------gIpye~i~V~k--~~~ 170 (224)
..++++|.+.|...|++... ..+..+++|+||+.. ||+|++|+++|+|+ |++|+.+.|+. +++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~ 87 (264)
T PRK11752 17 SNGGAFANINRPVAGATHEK--------TLPVGKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQ 87 (264)
T ss_pred CCCCcccccCCCCCCcchhc--------ccCCCCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccc
Confidence 35678999999999887762 334566789999975 99999999999997 89999987754 334
Q ss_pred cCHHHHHHhCCCCcccEEEeCC--CCeEeecHHHHHHHHHHHhC
Q 027373 171 RHREMVRRLGGKEQFPFLIDPN--TGVSMYESGDIVNYLFQQYG 212 (224)
Q Consensus 171 ~~~e~lk~l~p~~qVP~LvDpn--dG~~L~ES~aIi~YL~e~y~ 212 (224)
..++++ ++||.++||+|++++ +|+.|+||.+|++||+++|+
T Consensus 88 ~~~e~~-~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl~YL~~~~~ 130 (264)
T PRK11752 88 FSSGFV-EINPNSKIPALLDRSGNPPIRVFESGAILLYLAEKFG 130 (264)
T ss_pred cCHHHH-hhCCCCCCCEEEeCCCCCCeEEEcHHHHHHHHHHhcC
Confidence 455654 799999999999852 14799999999999999997
No 20
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.64 E-value=9.8e-16 Score=110.68 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=62.7
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHH
Q 027373 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (224)
Q Consensus 136 ~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e 209 (224)
+||+++.||+|++++++|+++|++|+.+.++.......+.++++||.++||+|+++ +|..++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~-~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGA-DGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcC-CCCEEeeHHHHHHHHhh
Confidence 69999999999999999999999999998876432223445679999999999974 58899999999999975
No 21
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.64 E-value=1.5e-15 Score=113.75 Aligned_cols=74 Identities=23% Similarity=0.367 Sum_probs=64.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHH
Q 027373 132 PTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (224)
Q Consensus 132 e~~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~ 208 (224)
...++||++..||+|++|+++|.++||+|+.++++... ..+.+++++|.++||+|+++ +|..|+||.+|++||+
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~--~~~~~~~~np~~~vPvL~~~-~g~~l~eS~aI~~yLe 89 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD--KPDWFLEKNPQGKVPALEID-EGKVVYESLIICEYLD 89 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC--CcHHHHhhCCCCCcCEEEEC-CCCEEECHHHHHHhhC
Confidence 35799999999999999999999999999999987643 23445579999999999973 4899999999999985
No 22
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.63 E-value=1e-15 Score=110.43 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=63.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~ 210 (224)
+++||+++.|++|+++|++|.++||+|+.+.++.+.+ . +.+++++|.++||+|+| +|..|+||.+|++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~-~-~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEW-Q-ESLKPKMLFGQLPCFKD--GDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHh-h-hhhhccCCCCCCCEEEE--CCEEEEcHHHHHHHHhcC
Confidence 4799999999999999999999999999998875322 2 33557999999999998 688999999999999763
No 23
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.63 E-value=1.9e-15 Score=109.39 Aligned_cols=68 Identities=24% Similarity=0.400 Sum_probs=60.9
Q ss_pred cEEEEEcC-------CChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHH
Q 027373 134 RLQLFEFE-------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (224)
Q Consensus 134 ~L~LYs~e-------~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~Y 206 (224)
+++||.+. .||||++|+++|.++|++|+.+.++. ++++|.++||+|++ +|..+.||.+|++|
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~---------~~~~p~g~vPvl~~--~g~~l~eS~~I~~y 69 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL---------AKRSPKGKLPFIEL--NGEKIADSELIIDH 69 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc---------ccCCCCCCCCEEEE--CCEEEcCHHHHHHH
Confidence 47899998 57999999999999999999988753 15789999999998 58999999999999
Q ss_pred HHHHhC
Q 027373 207 LFQQYG 212 (224)
Q Consensus 207 L~e~y~ 212 (224)
|+++|+
T Consensus 70 L~~~~~ 75 (75)
T cd03080 70 LEEKYG 75 (75)
T ss_pred HHHHcC
Confidence 999986
No 24
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.62 E-value=2e-15 Score=108.78 Aligned_cols=75 Identities=21% Similarity=0.245 Sum_probs=63.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCC--CccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhC
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~--~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~ 212 (224)
++||+++.| +|++||++|.++||+|+.+.++.. ++..++ +++++|.++||+|+++ +|..|+||.+|++||+++|+
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~-~~~~np~~~vP~l~~~-~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGAD-YLAINPKGQVPALVLD-DGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHh-HHHhCCCCCCCEEEEC-CCcEEEcHHHHHHHHHHhCc
Confidence 579999876 599999999999999999887653 233445 4579999999999983 58999999999999999985
No 25
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.62 E-value=1e-15 Score=110.07 Aligned_cols=68 Identities=32% Similarity=0.459 Sum_probs=54.8
Q ss_pred CChhHHHHHHHHHHcCCCcEEEEcCC--CCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHH
Q 027373 142 ACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (224)
Q Consensus 142 ~cPfCrrVR~~L~ElgIpye~i~V~k--~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~ 210 (224)
+||||+||+++|+++||+|+...+.. ......+.+.+++|.++||+|+|+ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~-~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDP-DGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEET-TTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEEC-CCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999877632 222333445679999999999986 789999999999999974
No 26
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.62 E-value=9.5e-16 Score=109.40 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=62.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e 209 (224)
++||+++.|++|++||++|+++||+|+.+.++...+...+ +++++|.++||+|+| +|..|+||.+|++||.+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~-~~~~~p~~~vP~L~~--~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELD-LKPTLPFGQLPVLEI--DGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhh-hccCCcCCCCCEEEE--CCEEEEecHHHHHHhhC
Confidence 5899999999999999999999999999988764433333 457999999999998 58999999999999964
No 27
>PRK10387 glutaredoxin 2; Provisional
Probab=99.62 E-value=1.5e-15 Score=127.17 Aligned_cols=76 Identities=30% Similarity=0.529 Sum_probs=65.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhCCC
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~~~ 214 (224)
|+||++..||||++||++|+++||+|+.++++.+++.. .+ +.+|.++||+|+.+ +|..|+||.+|++||+++|+.+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~--~~-~~~p~~~VPvL~~~-~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT--PI-RMIGQKQVPILQKD-DGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh--HH-HhcCCcccceEEec-CCeEecCHHHHHHHHHHhCCCc
Confidence 68999999999999999999999999999987654322 23 58899999999532 6899999999999999999864
No 28
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.62 E-value=2.9e-15 Score=101.80 Aligned_cols=71 Identities=32% Similarity=0.428 Sum_probs=61.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~ 208 (224)
++||++++||+|++++++|+++||+|+.+.++....... .+++.+|.+++|+|++ +|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~P~l~~--~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE-EFLALNPLGKVPVLED--GGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH-HHHhcCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 479999999999999999999999999999876543333 3567899999999998 5899999999999984
No 29
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.62 E-value=2.9e-15 Score=106.90 Aligned_cols=74 Identities=24% Similarity=0.386 Sum_probs=63.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCC--CccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhC
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~--~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~ 212 (224)
++||++.. ++|++|+++|+++||+|+.+.++.. ..+.++ +++++|.++||+|++ +|..|+||.+|++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~-~~~~~p~~~vP~l~~--~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPE-YLAINPLGKVPVLVD--GDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHH-HHhcCCCCCCCEEEE--CCEEEEcHHHHHHHHHHhCc
Confidence 57999885 7899999999999999999988753 233444 557999999999997 68999999999999999985
No 30
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.62 E-value=2.2e-15 Score=107.54 Aligned_cols=71 Identities=24% Similarity=0.333 Sum_probs=61.2
Q ss_pred EEEEEcCCChhHHHHHHHHHH--cCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITE--LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~E--lgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~ 208 (224)
++||++..||+|+++|++|.+ +|++|+.+.++.. .+.++ +++++|.++||+|+++ +|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~-~~~~~p~~~vP~l~~~-~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDES-LLAVNPLGKIPALVLD-DGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChH-HHHhCCCCCCCEEEEC-CCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999988753 23345 4579999999999864 6899999999999985
No 31
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.61 E-value=2.9e-15 Score=107.34 Aligned_cols=71 Identities=23% Similarity=0.322 Sum_probs=61.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCC--CCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k--~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~ 208 (224)
++||+++.+|+|++|+++|+++|++|+.++++. ++...++ +++++|.++||+|+| +|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~-~~~~nP~~~vP~L~~--~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPE-FLAMNPNGRVPVLED--GDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHH-HHhhCCCCCCCEEEE--CCEEEECHHHHHHHhC
Confidence 579999999999999999999999999988764 2334455 457999999999998 6889999999999984
No 32
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.60 E-value=3.2e-15 Score=109.98 Aligned_cols=70 Identities=23% Similarity=0.285 Sum_probs=57.9
Q ss_pred CCChhHHHHHHHHHHcCCCcEEEEcCCCCc-cCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhC
Q 027373 141 EACPFCRRVREAITELDLSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (224)
Q Consensus 141 e~cPfCrrVR~~L~ElgIpye~i~V~k~~~-~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~ 212 (224)
.+||||++||++|.++||+|+.+.++.... ...+++ +++|.++||+|+++ +|..|+||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~-~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDG-SGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEEC-CCCEEeCHHHHHHHHHHhCc
Confidence 579999999999999999999988764321 112334 68999999999983 38899999999999999985
No 33
>PLN02473 glutathione S-transferase
Probab=99.60 E-value=6.2e-15 Score=124.26 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=68.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCC--CccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHh
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~--~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y 211 (224)
-|+||++..||+|++|+++|+|+||+|+.+.++.. ++..++++ ++||.++||+|+| +|..|+||.+|++||+++|
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~-~~nP~g~vP~L~~--~g~~l~ES~aI~~YL~~~~ 78 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHL-LRQPFGQVPAIED--GDLKLFESRAIARYYATKY 78 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHH-hhCCCCCCCeEEE--CCEEEEehHHHHHHHHHHc
Confidence 48999999999999999999999999999877653 34566766 5899999999998 6899999999999999999
Q ss_pred CC
Q 027373 212 GK 213 (224)
Q Consensus 212 ~~ 213 (224)
+.
T Consensus 79 ~~ 80 (214)
T PLN02473 79 AD 80 (214)
T ss_pred CC
Confidence 75
No 34
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.59 E-value=5.6e-15 Score=104.49 Aligned_cols=71 Identities=25% Similarity=0.316 Sum_probs=61.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCC--CCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k--~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~ 208 (224)
|+||.+..|++|+++|++|.++||+|+.+.++. +.+...+ +++++|.++||+|++ +|..++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~-~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPA-YRALNPQGLVPTLVI--DGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChH-HHHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 589999999999999999999999999988764 2333444 557999999999998 5889999999999985
No 35
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.57 E-value=1.1e-14 Score=123.54 Aligned_cols=77 Identities=23% Similarity=0.435 Sum_probs=64.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCC--CCccCHHHHHHhCCCCcccEEEeC---CCC--eEeecHHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDP---NTG--VSMYESGDIVNY 206 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k--~~~~~~e~lk~l~p~~qVP~LvDp---ndG--~~L~ES~aIi~Y 206 (224)
+++||+.+ +|+|++|+++|+|+||+|+.+.++. +++..+++ +++||.++||+|+|. ++| .+|+||.+|++|
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~-~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~Y 78 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEF-LRISPNNKIPAIVDHSPADGGEPLSLFESGAILLY 78 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHH-HhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHH
Confidence 47999887 7999999999999999999988764 33344565 579999999999973 245 579999999999
Q ss_pred HHHHhC
Q 027373 207 LFQQYG 212 (224)
Q Consensus 207 L~e~y~ 212 (224)
|+++|+
T Consensus 79 L~~~~~ 84 (215)
T PRK13972 79 LAEKTG 84 (215)
T ss_pred HHHhcC
Confidence 999986
No 36
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.55 E-value=1.4e-14 Score=123.38 Aligned_cols=75 Identities=31% Similarity=0.462 Sum_probs=64.4
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhCCC
Q 027373 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (224)
Q Consensus 136 ~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~~~ 214 (224)
+||.+..||||++||++|.++||+|+.+++..+++. .. .++||.++||+|+++ +|..|+||.+|++||+++|+.+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~--~~-~~~np~g~vP~l~~~-~g~~l~es~~I~~yL~~~~~~~ 75 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE--TP-IRMIGAKQVPILQKD-DGRAMPESLDIVAYFDKLDGEP 75 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch--hH-HHhcCCCCcceEEee-CCeEeccHHHHHHHHHHhCCCc
Confidence 589999999999999999999999999988665432 23 368999999999832 6899999999999999999753
No 37
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8.4e-15 Score=125.25 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=69.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCC--CCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHh
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k--~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y 211 (224)
+.+||++..+.++.|||++|..+||+|+.++|+. ++.+....++++||.++||.|++ ||.+|.||.||++||+++|
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLTESLAIIEYLEETY 82 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEeehHHHHHHHHHhcC
Confidence 5789999999999999999999999999998865 32333345678999999999998 7999999999999999999
Q ss_pred CCCCC
Q 027373 212 GKGRS 216 (224)
Q Consensus 212 ~~~~~ 216 (224)
+++..
T Consensus 83 P~ppL 87 (217)
T KOG0868|consen 83 PDPPL 87 (217)
T ss_pred CCCCC
Confidence 87543
No 38
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.9e-14 Score=124.90 Aligned_cols=77 Identities=22% Similarity=0.273 Sum_probs=69.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhC-CCCcccEEEeCCCCeEeecHHHHHHHHHHHh
Q 027373 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG-GKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (224)
Q Consensus 133 ~~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~-p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y 211 (224)
..++||++..|||++||+++|++|||+|++++++..+ .++++.+.| +.++||+|+. +|..+.||..|++||+++|
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~--Ks~~ll~~np~hkKVPvL~H--n~k~i~ESliiveYiDe~w 83 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN--KSEWLLEKNPVHKKVPVLEH--NGKPICESLIIVEYIDETW 83 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC--CCHHHHHhccccccCCEEEE--CCceehhhHHHHHHHHhhc
Confidence 5699999999999999999999999999999998764 456676788 7999999998 5888999999999999999
Q ss_pred CC
Q 027373 212 GK 213 (224)
Q Consensus 212 ~~ 213 (224)
++
T Consensus 84 ~~ 85 (231)
T KOG0406|consen 84 PS 85 (231)
T ss_pred cC
Confidence 85
No 39
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.51 E-value=5.2e-14 Score=104.30 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=60.5
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCC--Ccc-CHHHHHHh----CCCCcccEEEeCCCCeEeecHHHHHHHHH
Q 027373 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKG--SIR-HREMVRRL----GGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (224)
Q Consensus 136 ~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~--~~~-~~e~lk~l----~p~~qVP~LvDpndG~~L~ES~aIi~YL~ 208 (224)
+||++...+.|+++|++|+++||+|+.+.++.. ++. ..++.... .|+++||+|+| +|..|+||.||++||.
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~--~g~~l~ES~AIl~YLa 79 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYID--GDVKLTQSNAILRYIA 79 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEE--CCEEEeehHHHHHHHh
Confidence 689999999999999999999999999888653 211 23443222 29999999998 6899999999999999
Q ss_pred HHh
Q 027373 209 QQY 211 (224)
Q Consensus 209 e~y 211 (224)
++|
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 875
No 40
>PLN02378 glutathione S-transferase DHAR1
Probab=99.51 E-value=5e-14 Score=120.21 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=61.7
Q ss_pred EcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhCCC
Q 027373 139 EFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (224)
Q Consensus 139 s~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~~~ 214 (224)
.+..||||++|+++|+++|++|+.+.++... +.+++ .++||.++||+|++ +|.+|+||.+|++||+++|+..
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~-l~inP~G~VPvL~~--~~~~l~ES~aI~~YL~~~~~~~ 87 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSD-KPQWF-LDISPQGKVPVLKI--DDKWVTDSDVIVGILEEKYPDP 87 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCccc-CCHHH-HHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHhCCCC
Confidence 3456999999999999999999999887653 34455 57999999999998 5789999999999999999753
No 41
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.50 E-value=1.4e-13 Score=101.05 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=60.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHH----HhCCCCcccEEEeCCCCeEeecHHHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVR----RLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk----~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~ 210 (224)
++||+++.++.|++++++|+++|++|+.+.++..+ ++.+ ...+.++||+|++ +|..|+||.||++||.++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~----~~~~~~~~~~~~~g~vP~L~~--~g~~l~ES~AI~~YL~~~ 75 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAE----DLEKLKKDGSLMFQQVPMVEI--DGMKLVQTRAILNYIAGK 75 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHH----HHHhhccccCCCCCCCCEEEE--CCEEEeeHHHHHHHHHHH
Confidence 57999999999999999999999999999886532 2221 1235899999987 689999999999999999
Q ss_pred hCC
Q 027373 211 YGK 213 (224)
Q Consensus 211 y~~ 213 (224)
|+.
T Consensus 76 ~~~ 78 (79)
T cd03077 76 YNL 78 (79)
T ss_pred cCC
Confidence 973
No 42
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.50 E-value=8.5e-14 Score=99.44 Aligned_cols=64 Identities=22% Similarity=0.394 Sum_probs=55.9
Q ss_pred EEEEcC-------CChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHH
Q 027373 136 QLFEFE-------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (224)
Q Consensus 136 ~LYs~e-------~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~ 208 (224)
+||.+. .||+|++++++|+++||+|+.++++.. .++|.++||+|++ +|..+.||.+|++||+
T Consensus 2 ~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~---------~~~p~g~vP~l~~--~g~~l~es~~I~~yL~ 70 (72)
T cd03054 2 ELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP---------WRSPTGKLPFLEL--NGEKIADSEKIIEYLK 70 (72)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc---------ccCCCcccCEEEE--CCEEEcCHHHHHHHHh
Confidence 566665 899999999999999999999988642 1689999999998 6899999999999998
Q ss_pred HH
Q 027373 209 QQ 210 (224)
Q Consensus 209 e~ 210 (224)
++
T Consensus 71 ~~ 72 (72)
T cd03054 71 KK 72 (72)
T ss_pred hC
Confidence 74
No 43
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.49 E-value=6.4e-14 Score=117.07 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=64.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhCC
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGK 213 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~~ 213 (224)
++||++..||++++||++|+++||+|+.++++... ....+.++||.++||+|+++ +|.+|+||.+|++||+++|+.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~--~~~~~~~~nP~g~vP~L~~~-~g~~l~eS~aI~~yL~~~~~~ 76 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYN--ADNGVAQYNPLGKVPALVTE-EGECWFDSPIIAEYIELLNVA 76 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCC--CchhhhhcCCccCCCeEEeC-CCCeeecHHHHHHHHHHhCCC
Confidence 58999999999999999999999999998876421 22234568999999999853 689999999999999999864
No 44
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.48 E-value=6.3e-14 Score=117.35 Aligned_cols=75 Identities=24% Similarity=0.267 Sum_probs=65.2
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCC---CccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhC
Q 027373 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKG---SIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (224)
Q Consensus 136 ~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~---~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~ 212 (224)
+||++..||+|++||++|.++||+|+.+.++.. ++..++ ++++||.++||+|++ +|..|+||.+|++||+++|+
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~-~~~~nP~g~vP~L~~--~g~~l~ES~aI~~yl~~~~~ 77 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPE-FLALNPQGLVPTLDI--DGEVLTQSLAIIEYLEETYP 77 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChh-hhhcCCCCcCCEEEE--CCEEeecHHHHHHHHHHhCC
Confidence 489898999999999999999999999888742 333344 557999999999998 68999999999999999997
Q ss_pred C
Q 027373 213 K 213 (224)
Q Consensus 213 ~ 213 (224)
.
T Consensus 78 ~ 78 (210)
T TIGR01262 78 D 78 (210)
T ss_pred C
Confidence 5
No 45
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.48 E-value=1.7e-13 Score=99.12 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=56.8
Q ss_pred cCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHH
Q 027373 140 FEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (224)
Q Consensus 140 ~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~ 208 (224)
...||+|++|+++|+++||+|+.+.++.......+.+++++|.++||+|++ +|..|+||.+|++||.
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVD--GGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEE--CCEEEEcHHHHHHHhC
Confidence 457999999999999999999999887643323344567999999999998 6889999999999984
No 46
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.48 E-value=2.8e-13 Score=99.45 Aligned_cols=75 Identities=23% Similarity=0.450 Sum_probs=64.3
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHH
Q 027373 130 DSPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (224)
Q Consensus 130 ~pe~~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~ 208 (224)
...++++||+.++||+|++++.+|+++||+|+.++++.+.. .. .++++++..+||+++. +|..|.++.+|++||+
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~-~~-~~~~~~g~~~vP~i~i--~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDAR-GR-SLRAVTGATTVPQVFI--GGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChH-HH-HHHHHHCCCCcCeEEE--CCEEEcCHHHHHHHhC
Confidence 34457999999999999999999999999999999986532 23 3556788999999987 6899999999999984
No 47
>PLN02395 glutathione S-transferase
Probab=99.48 E-value=2.7e-13 Score=114.15 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=64.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCC--CCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHh
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k--~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y 211 (224)
.++||+...| +++||+++|.|+||+|+.+.++. +++..+++ +++||.++||+|+| +|.+|+||.+|++||+++|
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~-~~~nP~g~vP~L~~--~~~~l~ES~aI~~YL~~~~ 77 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEY-LALQPFGVVPVIVD--GDYKIFESRAIMRYYAEKY 77 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHH-HhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHHHc
Confidence 4799997664 69999999999999999988764 23344554 57999999999998 6889999999999999999
Q ss_pred CC
Q 027373 212 GK 213 (224)
Q Consensus 212 ~~ 213 (224)
+.
T Consensus 78 ~~ 79 (215)
T PLN02395 78 RS 79 (215)
T ss_pred CC
Confidence 75
No 48
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.47 E-value=1e-13 Score=115.33 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=63.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCC--C-ccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHh
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKG--S-IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~--~-~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y 211 (224)
|+||+... +++++|+++|+|+||+|+.+.++.. . ...++ +.++||.++||+|+++ +|.+|+||.+|++||+++|
T Consensus 1 m~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~-~~~~nP~g~vPvL~~~-~g~~l~eS~aI~~YL~~~~ 77 (201)
T PRK10542 1 MKLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDD-YLAINPKGQVPALLLD-DGTLLTEGVAIMQYLADSV 77 (201)
T ss_pred Cceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChH-HHHhCcCCCCCeEEeC-CCcEeecHHHHHHHHHHhC
Confidence 57999875 4799999999999999999877653 2 22344 5579999999999853 6899999999999999999
Q ss_pred CCC
Q 027373 212 GKG 214 (224)
Q Consensus 212 ~~~ 214 (224)
+.+
T Consensus 78 ~~~ 80 (201)
T PRK10542 78 PDR 80 (201)
T ss_pred ccc
Confidence 854
No 49
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.47 E-value=1.7e-13 Score=120.92 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=62.4
Q ss_pred cCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhCCC
Q 027373 140 FEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (224)
Q Consensus 140 ~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~~~ 214 (224)
+..||||++|+++|.++||+|+.++++... +.++ +.++||.++||+|+| +|..|+||.+|++||+++|+.+
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~-~~~~-fl~inP~g~vPvL~~--~g~~l~ES~aI~eYL~e~~~~~ 86 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKR-KPED-LQNLAPGTHPPFLTY--NTEVKTDVNKIEEFLEETLCPP 86 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCC-CCHH-HHHHCcCCCCCEEEE--CCEEeecHHHHHHHHHHHcCCC
Confidence 457999999999999999999999997653 3345 557999999999998 6899999999999999999764
No 50
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.43 E-value=1e-12 Score=94.20 Aligned_cols=71 Identities=28% Similarity=0.477 Sum_probs=62.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~ 208 (224)
+++||+.++||+|.+++.+|+++|++|+.++++.+. ....++.+++..+||+++. +|..+.++.+|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~--~~~~~~~~~g~~~vP~ifi--~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI--TGRSLRAVTGAMTVPQVFI--DGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh--hHHHHHHHhCCCCcCeEEE--CCEEEeCHHHHHHHhC
Confidence 699999999999999999999999999999998764 2344556788999999977 6899999999999984
No 51
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.43 E-value=7.7e-13 Score=96.45 Aligned_cols=72 Identities=22% Similarity=0.264 Sum_probs=56.4
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCcEEEEcCC--CCccCHHHHHHhCCC-CcccEEEeCCCCeEeecHHHHHHHHHH
Q 027373 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGK-EQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (224)
Q Consensus 136 ~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k--~~~~~~e~lk~l~p~-~qVP~LvDpndG~~L~ES~aIi~YL~e 209 (224)
+|+.|.....|.++|++|+++|++|+.+.++. +.++.++ +++.+|. ++||+|+|+ +|..++||.||++||++
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e-~~~~~p~~g~vP~l~~~-~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPE-FLAINPMFGKVPALEDG-DGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHH-HHHHTTTSSSSSEEEET-TTEEEESHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchh-hhhcccccceeeEEEEC-CCCEEEcHHHHHHHhCC
Confidence 34444445599999999999999999987764 4344455 5579999 999999994 59999999999999985
No 52
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.40 E-value=7.2e-13 Score=118.29 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=60.9
Q ss_pred cCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhCCC
Q 027373 140 FEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (224)
Q Consensus 140 ~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~~~ 214 (224)
...||||++|+++|+|+||+|+.+.++... +..+ +.++||.++||+|++ +|..|+||.+|++||+++|+.+
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~-fl~iNP~GkVPvL~~--d~~~L~ES~aI~~YL~e~~p~~ 140 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEW-FLKISPEGKVPVVKL--DEKWVADSDVITQALEEKYPDP 140 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHH-HHhhCCCCCCCEEEE--CCEEEecHHHHHHHHHHHCCCC
Confidence 345999999999999999999999887653 3344 557999999999998 5679999999999999999863
No 53
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.40 E-value=1.5e-12 Score=110.18 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=64.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHH-----H--HhCCCCcccEEEeCCCCeEeecHHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMV-----R--RLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~l-----k--~l~p~~qVP~LvDpndG~~L~ES~aIi~Y 206 (224)
+++||+++.++.|++||++|+++||+|+.+.+.. +. .+++ + +++|+++||+|++ +|.+|+||.||++|
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~--~~-~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~eS~AI~~Y 78 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE--NG-DAFIEFKNFKKEKDTPFEQVPILEM--DNIIFAQSQAIVRY 78 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc--cc-hHHHHHHhccccCCCCCCCCCEEEE--CCEEEecHHHHHHH
Confidence 4999999999999999999999999999997742 11 2332 1 3799999999998 68999999999999
Q ss_pred HHHHhCC
Q 027373 207 LFQQYGK 213 (224)
Q Consensus 207 L~e~y~~ 213 (224)
|+++|+.
T Consensus 79 La~~~~~ 85 (205)
T PTZ00057 79 LSKKYKI 85 (205)
T ss_pred HHHHcCC
Confidence 9999974
No 54
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.6e-12 Score=113.11 Aligned_cols=76 Identities=36% Similarity=0.581 Sum_probs=69.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcC--CCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHh
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCP--KGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQY 211 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~--k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y 211 (224)
.++||++..+|.|++|.+++.++|++|+.+.++ .+++..++|+ ++||.++||+|+| +|..++||.||+.||.++|
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl-~~nP~~kVP~l~d--~~~~l~eS~AI~~Yl~~ky 78 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFL-KLNPLGKVPALED--GGLTLWESHAILRYLAEKY 78 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHH-hcCcCCCCCeEec--CCeEEeeHHHHHHHHHHHc
Confidence 588999999999999999999999999998654 4667788887 6999999999999 5999999999999999999
Q ss_pred C
Q 027373 212 G 212 (224)
Q Consensus 212 ~ 212 (224)
+
T Consensus 79 ~ 79 (226)
T KOG0867|consen 79 G 79 (226)
T ss_pred C
Confidence 8
No 55
>PRK10638 glutaredoxin 3; Provisional
Probab=99.33 E-value=8e-12 Score=92.23 Aligned_cols=72 Identities=17% Similarity=0.384 Sum_probs=62.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~ 208 (224)
.++||+.++||||++++.+|+++||+|+.++++.+.. .++.+.+++|..+||+++. +|..+....++.++-.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~-~~~~l~~~~g~~~vP~i~~--~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAA-KREEMIKRSGRTTVPQIFI--DAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHH-HHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHHHHH
Confidence 5999999999999999999999999999999986542 3455667899999999977 6899999999988743
No 56
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=6.1e-12 Score=107.67 Aligned_cols=76 Identities=32% Similarity=0.519 Sum_probs=66.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhCCC
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~~~ 214 (224)
|+||-|+.||||.|+|+++-.+|||++.+.+..++...+. .+-|..|||+|+- +||..|-||.+|++|+++.++.+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~---rmiG~KqVPiL~K-edg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPI---RMIGQKQVPILQK-EDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChh---hhhcccccceEEc-cccccchhhhHHHHHHHHhcCch
Confidence 5799999999999999999999999999888776655543 3567999999986 48999999999999999999854
No 57
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.23 E-value=6.2e-11 Score=81.73 Aligned_cols=70 Identities=20% Similarity=0.418 Sum_probs=61.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~Y 206 (224)
+++||+..+||+|++++.+|.+++++|+.+++..+.. ..++++++++..++|+++. +|..+.++.+|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~-~~~~l~~~~~~~~~P~~~~--~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE-LREELKELSGWPTVPQIFI--NGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH-HHHHHHHHhCCCCcCEEEE--CCEEEecHHHHHHh
Confidence 4899999999999999999999999999999987643 4556777899999999987 68999999988764
No 58
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=7.9e-11 Score=87.66 Aligned_cols=73 Identities=19% Similarity=0.387 Sum_probs=60.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCc-cCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~-~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~ 208 (224)
.+++|+.++||||.+++.+|+++|++|++++++.++. ..+++++..+|..+||+++. +|..++...++.++..
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~igg~~d~~~~~~ 75 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHVGGCDDLDALEA 75 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEEeCcccHHHHHh
Confidence 5899999999999999999999999999999988753 34566766779999999987 5777777666666654
No 59
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.20 E-value=8.4e-11 Score=84.52 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=59.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~ 205 (224)
.++||+.++||+|++++.+|+++||+|+.+++.++.. ..+.++++++..+||+++. +|..+..-.++.+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~-~~~el~~~~g~~~vP~v~i--~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPE-RKAELEERTGSSVVPQIFF--NEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHH-HHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHh
Confidence 5899999999999999999999999999999987653 3455667889999999977 6888888777665
No 60
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.19 E-value=1.4e-10 Score=85.83 Aligned_cols=76 Identities=20% Similarity=0.354 Sum_probs=64.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHH-----cCCCcEEEEcCCCCccCHHHHHHhCCC--CcccEEEeCCCCeEeecHHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITE-----LDLSVEVFPCPKGSIRHREMVRRLGGK--EQFPFLIDPNTGVSMYESGDIVNY 206 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~E-----lgIpye~i~V~k~~~~~~e~lk~l~p~--~qVP~LvDpndG~~L~ES~aIi~Y 206 (224)
.++||+.++||+|++++.+|++ .+++|+.+++..+... .+.+.+..+. .+||.++. +|..+.+..+|.+|
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~-~~el~~~~~~~~~~vP~ifi--~g~~igg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGIS-KADLEKTVGKPVETVPQIFV--DQKHIGGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHH-HHHHHHHHCCCCCcCCEEEE--CCEEEcCHHHHHHH
Confidence 5899999999999999999999 8999999999865322 3345555554 78999976 69999999999999
Q ss_pred HHHHhC
Q 027373 207 LFQQYG 212 (224)
Q Consensus 207 L~e~y~ 212 (224)
+.++|+
T Consensus 79 ~~~~~~ 84 (85)
T PRK11200 79 VKENLG 84 (85)
T ss_pred HHHhcc
Confidence 999986
No 61
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.19 E-value=1.3e-10 Score=82.91 Aligned_cols=72 Identities=15% Similarity=0.309 Sum_probs=58.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCC-cccEEEeCCCCeEeecHHHHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKE-QFPFLIDPNTGVSMYESGDIVNYLF 208 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~-qVP~LvDpndG~~L~ES~aIi~YL~ 208 (224)
+++||+.++||+|.+++.+|+++||+|+.++++... ...+.+.+..+.. +||+++. +|..+.+..++.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~-~~~~~~~~~~~~~~~vP~v~i--~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDP-ALREEMINRSGGRRTVPQIFI--GDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCH-HHHHHHHHHhCCCCccCEEEE--CCEEEeChHHHHHHHh
Confidence 389999999999999999999999999999998653 2233344455555 9999987 6899999999998753
No 62
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.18 E-value=1.4e-10 Score=86.75 Aligned_cols=76 Identities=17% Similarity=0.354 Sum_probs=62.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHc-----CCCcEEEEcCCCCccCHHHHHHhCCC--CcccEEEeCCCCeEeecHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGK--EQFPFLIDPNTGVSMYESGDIVNYL 207 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~El-----gIpye~i~V~k~~~~~~e~lk~l~p~--~qVP~LvDpndG~~L~ES~aIi~YL 207 (224)
++||+.++||||.+++.+|+++ +++|+.+++..+.. .++.+.+..+. ..||+++. +|..+.++.+|++|+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~-~~~~l~~~~g~~~~tVP~ifi--~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGI-SKADLEKTVGKPVETVPQIFV--DEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHH-HHHHHHHHhCCCCCCcCeEEE--CCEEecCHHHHHHHH
Confidence 6899999999999999999998 46788888875432 23335566665 79999976 689999999999999
Q ss_pred HHHhCC
Q 027373 208 FQQYGK 213 (224)
Q Consensus 208 ~e~y~~ 213 (224)
.++|+-
T Consensus 79 ~~~~~~ 84 (86)
T TIGR02183 79 KENFDI 84 (86)
T ss_pred Hhcccc
Confidence 998863
No 63
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.17 E-value=1.2e-10 Score=80.99 Aligned_cols=71 Identities=18% Similarity=0.404 Sum_probs=58.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEe--ecHHHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM--YESGDIVNYL 207 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L--~ES~aIi~YL 207 (224)
+++||+.++||+|++++.+|++++++|+.++++.+.... +.+.+.++...||++++ +|..+ ++..+|.+||
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~-~~~~~~~~~~~vP~~~~--~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAR-EEVLKVLGQRGVPVIVI--GHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHH-HHHHHHhCCCcccEEEE--CCEEEeeCCHHHHHHHh
Confidence 489999999999999999999999999999997654333 33446788999999987 47666 7788888776
No 64
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.15 E-value=2.5e-10 Score=80.93 Aligned_cols=73 Identities=12% Similarity=0.250 Sum_probs=59.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhC-CCCcccEEEeCCCCeEeec--HHHHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG-GKEQFPFLIDPNTGVSMYE--SGDIVNYLF 208 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~-p~~qVP~LvDpndG~~L~E--S~aIi~YL~ 208 (224)
.++||+.++||+|++++.+|++++++|+.++++.+. ...+++++++ +...||+++.. +|..+.+ ..+|..+|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~-~~~~~~~~~~~~~~~vP~i~~~-~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDE-GAADRVVSVNNGNMTVPTVKFA-DGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCH-hHHHHHHHHhCCCceeCEEEEC-CCeEecCCCHHHHHHHhh
Confidence 378999999999999999999999999999998764 3345666676 89999999653 6766555 677888775
No 65
>PHA03050 glutaredoxin; Provisional
Probab=99.12 E-value=3.4e-10 Score=88.92 Aligned_cols=73 Identities=16% Similarity=0.363 Sum_probs=62.4
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHcCC---CcEEEEcCCCC--ccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHH
Q 027373 132 PTRLQLFEFEACPFCRRVREAITELDL---SVEVFPCPKGS--IRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (224)
Q Consensus 132 e~~L~LYs~e~cPfCrrVR~~L~ElgI---pye~i~V~k~~--~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~Y 206 (224)
.++++||+.++||||++++.+|++++| +|++++++..+ ...++.++++++..+||.++. +|..+...+++.+.
T Consensus 12 ~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iGG~ddl~~l 89 (108)
T PHA03050 12 NNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIGGYSDLLEI 89 (108)
T ss_pred cCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEeChHHHHHH
Confidence 347999999999999999999999999 89999998632 234677888999999999977 68889999888874
No 66
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.11 E-value=2.2e-10 Score=84.77 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=52.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~ 210 (224)
...|+. .+++|.+++++|+++|++|+.+....+ + ..+|.++||+|++ +|.+|.||.+|+.||.++
T Consensus 10 ~~~~~~--~~~~~~kv~~~L~elglpye~~~~~~~-----~---~~~P~GkVP~L~~--dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 10 EQILLP--DNASCLAVQTFLKMCNLPFNVRCRANA-----E---FMSPSGKVPFIRV--GNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CeeecC--CCCCHHHHHHHHHHcCCCcEEEecCCc-----c---ccCCCCcccEEEE--CCEEEeCHHHHHHHHhcC
Confidence 355554 468899999999999999999854321 1 1467899999998 789999999999999864
No 67
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.09 E-value=6.9e-10 Score=80.10 Aligned_cols=74 Identities=18% Similarity=0.360 Sum_probs=63.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCc--cCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI--RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~--~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e 209 (224)
++++|+.++||+|++++.+|.+++++|+.++++..+. ..+++++++++..++|+++. +|..+.+..+|+++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 4899999999999999999999999999999876542 22445767888999999977 68999999999998764
No 68
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.07 E-value=9.9e-10 Score=84.62 Aligned_cols=75 Identities=17% Similarity=0.276 Sum_probs=61.4
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCcc--CHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHH
Q 027373 131 SPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIR--HREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYL 207 (224)
Q Consensus 131 pe~~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~--~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL 207 (224)
.+++++||+.++||||++++.+|+++|++|+.++++.++.. ..+.+.++++..+||.++. +|..+...+++.+..
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVGGLENVMALH 82 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEcCHHHHHHHH
Confidence 34679999999999999999999999999999999865321 2334556778999999976 688899888887753
No 69
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.07 E-value=7.1e-10 Score=80.39 Aligned_cols=72 Identities=13% Similarity=0.303 Sum_probs=60.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e 209 (224)
++||+.++||+|.+++.+|+++||+|+.++++.+. ...+.+++.++...||+++. +|..+....++.++-++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~-~~~~~~~~~~g~~~vP~i~i--~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP-ALRDEMMQRSGRRTVPQIFI--GDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH-HHHHHHHHHhCCCCcCEEEE--CCEEEcChHHHHHHHHc
Confidence 58999999999999999999999999999998654 33444566778999999977 68899999998887543
No 70
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.06 E-value=9.2e-10 Score=84.52 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=63.4
Q ss_pred CCCcEEEEEc-----CCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHH
Q 027373 131 SPTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (224)
Q Consensus 131 pe~~L~LYs~-----e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~ 205 (224)
.++++.||.. ++||||.+++.+|+++||+|+.+++..+ +..+++++++++..+||.++. +|..+...+++.+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi--~g~~iGG~ddl~~ 86 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYV--KGEFVGGCDIIME 86 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEEeChHHHHH
Confidence 3467999987 8999999999999999999999999755 355667778899999999977 6888999988887
Q ss_pred HHH
Q 027373 206 YLF 208 (224)
Q Consensus 206 YL~ 208 (224)
...
T Consensus 87 l~~ 89 (97)
T TIGR00365 87 MYQ 89 (97)
T ss_pred HHH
Confidence 643
No 71
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.05 E-value=1.1e-09 Score=81.67 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=56.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e 209 (224)
.++||+.++||+|++++.+|+++||+|+.++++.+. ...++++ ..|..+||+++..+.-..-|+-..|-+....
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~-~~~~~~~-~~g~~~vPvv~i~~~~~~Gf~~~~l~~~~~~ 75 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVP-EAAETLR-AQGFRQLPVVIAGDLSWSGFRPDMINRLHPA 75 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCH-HHHHHHH-HcCCCCcCEEEECCEEEecCCHHHHHHHHHh
Confidence 589999999999999999999999999999998653 3344454 3688999999874222345667777666543
No 72
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.03 E-value=1e-09 Score=76.13 Aligned_cols=63 Identities=14% Similarity=0.397 Sum_probs=52.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeec
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~E 199 (224)
++++|+..+||+|++++++|.+++++|..++++.+. ...++++++++..+||+|++ +|..+.+
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~-~~~~~~~~~~~~~~vP~i~~--~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDP-EALEELKKLNGYRSVPVVVI--GDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCH-HHHHHHHHHcCCcccCEEEE--CCEEEec
Confidence 479999999999999999999999999999997653 33455667889999999988 4555544
No 73
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.02 E-value=1.9e-09 Score=81.19 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=63.0
Q ss_pred CCcEEEEEc-----CCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHH
Q 027373 132 PTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (224)
Q Consensus 132 e~~L~LYs~-----e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~Y 206 (224)
+++++||.. ++||||.+++.+|+++|++|+.+++..+ ...++.+.++++..+||.++. +|..+....++.++
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~vfi--~g~~iGG~~~l~~l 83 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED-EEVRQGLKEYSNWPTFPQLYV--NGELVGGCDIVKEM 83 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEEeCHHHHHHH
Confidence 457999987 6999999999999999999999999765 345667778889999999976 68899999999886
Q ss_pred H
Q 027373 207 L 207 (224)
Q Consensus 207 L 207 (224)
.
T Consensus 84 ~ 84 (90)
T cd03028 84 H 84 (90)
T ss_pred H
Confidence 4
No 74
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.98 E-value=9.1e-10 Score=76.28 Aligned_cols=59 Identities=20% Similarity=0.476 Sum_probs=50.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeE
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~ 196 (224)
++||+.++||+|++++.+|+++|++|+.++++.+. ..++.+++..+..++|.++. +|..
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~-~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE-EAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH-HHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch-hHHHHHHHHcCCCccCEEEE--CCEE
Confidence 68999999999999999999999999999998764 45666777778999999976 5654
No 75
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=98.98 E-value=4.7e-10 Score=100.97 Aligned_cols=85 Identities=19% Similarity=0.268 Sum_probs=72.6
Q ss_pred CCCCCcEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCC--CCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHH
Q 027373 129 SDSPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPK--GSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (224)
Q Consensus 129 ~~pe~~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k--~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~Y 206 (224)
+.+...++||.++.+-.+++||+++.|+||+|+.++|+. +.+..+.|+ .+||.+.||+|++ +..+|.++..||+|
T Consensus 21 ~~~~e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFm-rlNp~gevPVl~~--g~~II~d~tqIIdY 97 (325)
T KOG4420|consen 21 HWPRESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFM-RLNPGGEVPVLIH--GDNIISDYTQIIDY 97 (325)
T ss_pred CCchhcceeeecCcccccceeeeehhhcccccceeeccCccccccCchhe-ecCCCCCCceEec--CCeecccHHHHHHH
Confidence 344556999999999999999999999999999988754 566666666 6999999999997 56789999999999
Q ss_pred HHHHhCCCCC
Q 027373 207 LFQQYGKGRS 216 (224)
Q Consensus 207 L~e~y~~~~~ 216 (224)
++++|-++..
T Consensus 98 vErtf~ger~ 107 (325)
T KOG4420|consen 98 VERTFTGERV 107 (325)
T ss_pred HHHhhccccc
Confidence 9999976553
No 76
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.96 E-value=4.6e-09 Score=75.74 Aligned_cols=73 Identities=18% Similarity=0.410 Sum_probs=60.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCC--cEEEEcCCCCc--cCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITELDLS--VEVFPCPKGSI--RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIp--ye~i~V~k~~~--~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e 209 (224)
+++|+.++||+|++++.+|.+++++ |+.++++.... ...+++.+.++..+||.++. +|..+.++.+++++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 5799999999999999999999999 99999876532 22345667788889999976 68999999999998754
No 77
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.96 E-value=2.9e-09 Score=76.54 Aligned_cols=54 Identities=17% Similarity=0.410 Sum_probs=45.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEe
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvD 190 (224)
++||+.++||+|++++.+|+++||+|+.+++..+. ...+.++. .+..+||+++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~-~~~~~~~~-~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP-EAIDYVKA-QGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH-HHHHHHHH-cCCcccCEEEE
Confidence 58999999999999999999999999999998654 33455554 57889999977
No 78
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.95 E-value=2.3e-09 Score=97.48 Aligned_cols=74 Identities=26% Similarity=0.473 Sum_probs=61.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhCC
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGK 213 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~~ 213 (224)
.++||.|+.||||-+||.+|+..||+|++++|+.-. +..+ +.....+||.|.. +|+.|.||..||.-|...-..
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~---r~eI-k~SsykKVPil~~--~Geqm~dSsvIIs~laTyLq~ 163 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL---RQEI-KWSSYKKVPILLI--RGEQMVDSSVIISLLATYLQD 163 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchh---hhhc-cccccccccEEEe--ccceechhHHHHHHHHHHhcc
Confidence 699999999999999999999999999999987542 3334 3567899999976 487899999999887544333
No 79
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=7e-09 Score=90.33 Aligned_cols=75 Identities=20% Similarity=0.211 Sum_probs=66.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhC
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYG 212 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~ 212 (224)
.++|++|.....|..+|++|+..|++||.+.+..++. -..++...|.+|+|+|.. ||..|.+|.||++||+++||
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~--w~~~K~~~pfgqlP~l~v--Dg~~i~QS~AI~RyLArk~g 77 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA--WEELKDKMPFGQLPVLEV--DGKKLVQSRAILRYLARKFG 77 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc--hhhhcccCCCCCCCEEeE--CCEeeccHHHHHHHHHHHhC
Confidence 4899999999999999999999999999999988762 122455689999999965 69999999999999999998
No 80
>PRK10824 glutaredoxin-4; Provisional
Probab=98.75 E-value=4.3e-08 Score=78.26 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=63.3
Q ss_pred CCCcEEEEEc-----CCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHH
Q 027373 131 SPTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (224)
Q Consensus 131 pe~~L~LYs~-----e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~ 205 (224)
.++++.||.. ++||||++++.+|..+|++|..+++..+ ...++.++++++..+||.+.. +|..+...+++.+
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d-~~~~~~l~~~sg~~TVPQIFI--~G~~IGG~ddl~~ 89 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN-PDIRAELPKYANWPTFPQLWV--DGELVGGCDIVIE 89 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC-HHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHH
Confidence 3467999998 4899999999999999999999999765 345677888999999999966 6999999999888
Q ss_pred HH
Q 027373 206 YL 207 (224)
Q Consensus 206 YL 207 (224)
..
T Consensus 90 l~ 91 (115)
T PRK10824 90 MY 91 (115)
T ss_pred HH
Confidence 64
No 81
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.63 E-value=1.9e-07 Score=68.18 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=49.3
Q ss_pred CChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHH
Q 027373 142 ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (224)
Q Consensus 142 ~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~ 210 (224)
.+|+|.++..+|+..|++|+.+.... . ...|++++|+|++ +|..+.+|..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n-~--------~~sp~gkLP~l~~--~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN-P--------WRSPTGKLPALLT--SGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC-C--------CCCCCCccCEEEE--CCEEecChHHHHHHHHHc
Confidence 57999999999999999998875432 1 2468999999998 689999999999999875
No 82
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=98.57 E-value=2.6e-07 Score=80.90 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=64.6
Q ss_pred CChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhCCCCCCC
Q 027373 142 ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKGRSPS 218 (224)
Q Consensus 142 ~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~~~~~p~ 218 (224)
.||||+++-+.|.+++++|.+.-|+.. +.+++++++.|.+++|+|.. ++....|+..|.++|+++|+.+..|.
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~--~kp~~f~~~sp~~~~P~l~~--d~~~~tDs~~Ie~~Lee~l~~p~~~~ 92 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLS--RKPEWFLDISPGGKPPVLKF--DEKWVTDSDKIEEFLEEKLPPPKLPT 92 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecC--CCcHHHHhhCCCCCCCeEEe--CCceeccHHHHHHHHHHhcCCCCCcc
Confidence 699999999999999999999887765 34566778999999999987 68999999999999999999877665
No 83
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=5.1e-07 Score=71.00 Aligned_cols=75 Identities=19% Similarity=0.424 Sum_probs=63.6
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCc--cCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHH
Q 027373 130 DSPTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI--RHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (224)
Q Consensus 130 ~pe~~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~--~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~Y 206 (224)
..++++.+|+..+||||++++.+|...++.+..++++..+. ..++.+.++++..+||.+.. +|..+....+|.++
T Consensus 11 i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iGG~~dl~~l 87 (104)
T KOG1752|consen 11 ISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIGGASDLMAL 87 (104)
T ss_pred hhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEcCHHHHHHH
Confidence 34568999999999999999999999999999999987642 34566667889999999976 68888998888876
No 84
>PTZ00062 glutaredoxin; Provisional
Probab=98.46 E-value=8e-07 Score=77.27 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=62.7
Q ss_pred CCCcEEEEEc-----CCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHH
Q 027373 131 SPTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (224)
Q Consensus 131 pe~~L~LYs~-----e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~ 205 (224)
..+++.||.. +.||||++++.+|++++|+|+.+++..+. ..++.++++++..+||.+.. +|..+...+++.+
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~-~~~~~l~~~sg~~TvPqVfI--~G~~IGG~d~l~~ 187 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDP-DLREELKVYSNWPTYPQLYV--NGELIGGHDIIKE 187 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCH-HHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHH
Confidence 3467999988 68999999999999999999999998663 45677878899999999976 6888988888887
Q ss_pred HH
Q 027373 206 YL 207 (224)
Q Consensus 206 YL 207 (224)
..
T Consensus 188 l~ 189 (204)
T PTZ00062 188 LY 189 (204)
T ss_pred HH
Confidence 53
No 85
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=98.41 E-value=9.8e-07 Score=83.50 Aligned_cols=69 Identities=12% Similarity=0.288 Sum_probs=55.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHh--------CCCCcccEEEeCCCCeEeecHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRL--------GGKEQFPFLIDPNTGVSMYESGDIVN 205 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l--------~p~~qVP~LvDpndG~~L~ES~aIi~ 205 (224)
.+++|+.++||+|++++.+|+++||+|+.++|+++. ...+.++++ .+..+||+++. +|..+..-+++..
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~-~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~igGf~~l~~ 79 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDV-KRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIGGYDNLMA 79 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCh-hHHHHHHHHhhccccccCCCCccCeEEE--CCEEEeCchHHHH
Confidence 599999999999999999999999999999998653 333333332 46789999976 5788888888765
No 86
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=98.35 E-value=2.3e-06 Score=71.02 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=56.5
Q ss_pred EEEEEcC------CChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCC----CcccEEEeCCCCeEeecHHHHH
Q 027373 135 LQLFEFE------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGK----EQFPFLIDPNTGVSMYESGDIV 204 (224)
Q Consensus 135 L~LYs~e------~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~----~qVP~LvDpndG~~L~ES~aIi 204 (224)
++||... .||+|++|+.+|+.++|+|++++|+++. ...++++++.+. ..||.+.. +|..|....++.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~-~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IGG~del~ 78 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDS-GFREELRELLGAELKAVSLPRVFV--DGRYLGGAEEVL 78 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCH-HHHHHHHHHhCCCCCCCCCCEEEE--CCEEEecHHHHH
Confidence 7899998 8999999999999999999999998764 334556666554 89999976 588888888877
Q ss_pred HH
Q 027373 205 NY 206 (224)
Q Consensus 205 ~Y 206 (224)
+.
T Consensus 79 ~L 80 (147)
T cd03031 79 RL 80 (147)
T ss_pred HH
Confidence 64
No 87
>PLN02907 glutamate-tRNA ligase
Probab=98.15 E-value=5.5e-06 Score=83.75 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=53.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHHhCCC
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGKG 214 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~~~ 214 (224)
++||+.+.++ +.++.++|+++|++|+.+. .+|.++||+|+++ +|..|+||.+|++||++.|+..
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~--------------~~p~GkVPvLv~d-dG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP--------------SLKSGSAPTLLFS-SGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEee--------------cCCCCCCcEEEEC-CCCEEECHHHHHHHHHHhCCCc
Confidence 7899888654 5568999999999999864 1479999999864 6899999999999999999643
No 88
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.12 E-value=1e-05 Score=56.39 Aligned_cols=59 Identities=17% Similarity=0.398 Sum_probs=44.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-----CCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeec
Q 027373 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El-----gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~E 199 (224)
.+++|+.++||+|++++.+|+++ +++|..++++.. ++ +.+..+...+|+++. +|..++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~----~~-l~~~~~i~~vPti~i--~~~~~~~ 65 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF----PD-LADEYGVMSVPAIVI--NGKVEFV 65 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC----Hh-HHHHcCCcccCEEEE--CCEEEEe
Confidence 48899999999999999999987 577777776533 23 334567788999977 4666553
No 89
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.10 E-value=4.5e-06 Score=65.34 Aligned_cols=51 Identities=18% Similarity=0.447 Sum_probs=38.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCccc
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFP 186 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP 186 (224)
|+||+.++||+|++++.+|+++||+|+.+++..+.. ..+.++++.....+|
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~-~~~el~~~~~~~~~~ 51 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPP-SKEELKKWLEKSGLP 51 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcc-cHHHHHHHHHHcCCC
Confidence 589999999999999999999999999999976543 333344433333333
No 90
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.89 E-value=2.8e-05 Score=62.85 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=33.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCC
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~ 169 (224)
+++||+.++||+|++++.+|+++||+|+.+++..+.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~ 36 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSP 36 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCCh
Confidence 489999999999999999999999999999986654
No 91
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.89 E-value=2.3e-05 Score=60.10 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=36.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCC
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGG 181 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p 181 (224)
|+||+.++||+|++++.+|+++||+|+++++..... ..+.++++..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~-~~~~l~~~~~ 46 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPP-TKEELKELLA 46 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCC-CHHHHHHHHH
Confidence 579999999999999999999999999999976543 2333444433
No 92
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=97.79 E-value=6.5e-05 Score=68.02 Aligned_cols=72 Identities=22% Similarity=0.442 Sum_probs=61.7
Q ss_pred CcEEEEEcC-------CChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHH
Q 027373 133 TRLQLFEFE-------ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVN 205 (224)
Q Consensus 133 ~~L~LYs~e-------~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~ 205 (224)
+-+-||.|+ .||||.+|-.+|...+||||.+++... ....+|++|+++- +|+.+.+|.-|+.
T Consensus 44 D~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~---------~rSr~G~lPFIEL--NGe~iaDS~~I~~ 112 (281)
T KOG4244|consen 44 DTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK---------RRSRNGTLPFIEL--NGEHIADSDLIED 112 (281)
T ss_pred CeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce---------eeccCCCcceEEe--CCeeccccHHHHH
Confidence 458899986 578999999999999999999886532 2467899999987 6999999999999
Q ss_pred HHHHHhCCCC
Q 027373 206 YLFQQYGKGR 215 (224)
Q Consensus 206 YL~e~y~~~~ 215 (224)
+|.++|+-..
T Consensus 113 ~L~~hf~~~~ 122 (281)
T KOG4244|consen 113 RLRKHFKIPD 122 (281)
T ss_pred HHHHHcCCCC
Confidence 9999998654
No 93
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.79 E-value=4.7e-05 Score=59.75 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=33.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCC
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~ 169 (224)
+++||+.+.|++|++++.+|+++||+|+++++.+..
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~ 36 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQP 36 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCc
Confidence 389999999999999999999999999999996653
No 94
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.66 E-value=7.3e-05 Score=58.77 Aligned_cols=35 Identities=9% Similarity=0.358 Sum_probs=32.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCC
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~ 169 (224)
++||+.+.||+|++++.+|++.||+|+++++....
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~ 35 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDG 35 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCCh
Confidence 57999999999999999999999999999997653
No 95
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.62 E-value=0.00014 Score=58.89 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=33.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCC
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~ 169 (224)
++++|+.+.|+.|++++.+|+++||+|+.+++.++.
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~ 36 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNS 36 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCc
Confidence 489999999999999999999999999999987654
No 96
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.62 E-value=0.00016 Score=58.72 Aligned_cols=36 Identities=14% Similarity=0.375 Sum_probs=33.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCC
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~ 169 (224)
+++||+.+.|+.|++++.+|++.||+|+++++.+..
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~ 36 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEP 36 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCC
Confidence 489999999999999999999999999999997654
No 97
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.42 E-value=0.00037 Score=54.32 Aligned_cols=35 Identities=11% Similarity=0.319 Sum_probs=32.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCC
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~ 169 (224)
|++|+.++|+.|++++.+|++.||+|+++++.+..
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p 35 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDG 35 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCC
Confidence 58999999999999999999999999999997654
No 98
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.30 E-value=0.00067 Score=53.70 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=32.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCC
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~ 169 (224)
|+||+.+.|+.|++++.+|++.||+|+++++-+..
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p 36 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEP 36 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCC
Confidence 78999999999999999999999999999986654
No 99
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=97.28 E-value=0.002 Score=49.41 Aligned_cols=69 Identities=9% Similarity=0.042 Sum_probs=53.1
Q ss_pred EEEEEcCCCh------hHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCC----CCcccEEEeCCCCeEeecHHHHH
Q 027373 135 LQLFEFEACP------FCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGG----KEQFPFLIDPNTGVSMYESGDIV 204 (224)
Q Consensus 135 L~LYs~e~cP------fCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p----~~qVP~LvDpndG~~L~ES~aIi 204 (224)
|+||....+. .|++|+.+|+.++|+|+.++|+.+. ..++++.+..+ ...||.+.. ++..+....++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~-~~r~em~~~~~~~~g~~tvPQIFi--~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNE-ENRQWMRENVPNENGKPLPPQIFN--GDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCH-HHHHHHHHhcCCCCCCCCCCEEEE--CCEEeeCHHHHH
Confidence 5677654332 7999999999999999999998764 45566666644 489998865 688999998887
Q ss_pred HH
Q 027373 205 NY 206 (224)
Q Consensus 205 ~Y 206 (224)
+.
T Consensus 79 ~l 80 (92)
T cd03030 79 EA 80 (92)
T ss_pred HH
Confidence 74
No 100
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.25 E-value=0.0018 Score=47.16 Aligned_cols=56 Identities=18% Similarity=0.347 Sum_probs=41.9
Q ss_pred cEEEEEcCCChhHHHH----HHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEee
Q 027373 134 RLQLFEFEACPFCRRV----REAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 198 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrV----R~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ 198 (224)
.+.+|. +|||+|..+ ..++++++++++++.++. .+... ..+...+|+++. +|..++
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~-----~~~a~-~~~v~~vPti~i--~G~~~~ 61 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD-----MNEIL-EAGVTATPGVAV--DGELVI 61 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHH-HcCCCcCCEEEE--CCEEEE
Confidence 377887 899999999 668888899999988872 22233 357889999977 565544
No 101
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0012 Score=49.75 Aligned_cols=61 Identities=20% Similarity=0.372 Sum_probs=46.2
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCcc----------CH--HHHHHhCCCCcccEEEeCCCCeEee
Q 027373 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIR----------HR--EMVRRLGGKEQFPFLIDPNTGVSMY 198 (224)
Q Consensus 136 ~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~----------~~--e~lk~l~p~~qVP~LvDpndG~~L~ 198 (224)
+||+...||-|..+.+.|+.++++|+.++|.....+ .+ +.+ +.++.-.+|+|..+ ||.++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~v-k~~gyiGIPall~~-d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEV-KSNGYIGIPALLTD-DGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhh-hhcCcccceEEEeC-CCcEEE
Confidence 899999999999999999999999999998542211 11 223 35788889999664 665554
No 102
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.04 E-value=0.0042 Score=45.58 Aligned_cols=57 Identities=26% Similarity=0.321 Sum_probs=48.2
Q ss_pred CChhHHHHHHHHHHcCCC---cEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHH
Q 027373 142 ACPFCRRVREAITELDLS---VEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLF 208 (224)
Q Consensus 142 ~cPfCrrVR~~L~ElgIp---ye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~ 208 (224)
-+|-|.++..+|+..+.+ |+++..... .+.|.+++|+|++ .++..+.+-.+|++||.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~---------~~Sptg~LP~L~~-~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNP---------WLSPTGELPALID-SGGTWVSGFRNIVEYLR 72 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCC---------CcCCCCCCCEEEE-CCCcEEECHHHHHHhhC
Confidence 478999999999999999 887775432 2579999999998 46889999999999983
No 103
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.96 E-value=0.0064 Score=43.21 Aligned_cols=71 Identities=18% Similarity=0.335 Sum_probs=44.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHH----cCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCe-Eee---cHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITE----LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV-SMY---ESGDIVN 205 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~E----lgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~-~L~---ES~aIi~ 205 (224)
.++||..+|||+|+.+...|++ .+..+.+..++.+. .++.. +..+-..+|+++. +|. .+. .-.+|.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~--~~~~~-~~~~v~~vPt~~~--~g~~~~~G~~~~~~l~~ 76 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME--NPQKA-MEYGIMAVPAIVI--NGDVEFIGAPTKEELVE 76 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc--CHHHH-HHcCCccCCEEEE--CCEEEEecCCCHHHHHH
Confidence 4789999999999999999875 34334444443322 23433 3567788999976 343 222 3455555
Q ss_pred HHHH
Q 027373 206 YLFQ 209 (224)
Q Consensus 206 YL~e 209 (224)
.|.+
T Consensus 77 ~l~~ 80 (82)
T TIGR00411 77 AIKK 80 (82)
T ss_pred HHHh
Confidence 5543
No 104
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.96 E-value=0.0025 Score=40.24 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=38.9
Q ss_pred EEEEEcCCChhHHHHHHHHH-----HcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEe
Q 027373 135 LQLFEFEACPFCRRVREAIT-----ELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~-----ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvD 190 (224)
|.+|...+|++|++++..+. ..++.+..+++...... .+. ....+...+|.++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPAL-EKE-LKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHH-hhH-HHhCCCccccEEEE
Confidence 46788889999999999999 45777777777654321 121 13567889998865
No 105
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.87 E-value=0.0031 Score=50.95 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=32.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCC
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~ 169 (224)
.|+||+.+.|.-|++++.+|+++||+|+++++-+..
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p 37 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEP 37 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCC
Confidence 489999999999999999999999999999986543
No 106
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.86 E-value=0.0032 Score=50.33 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=33.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCC
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~ 169 (224)
+|+||+.+.|--|++++.+|++.||+|+++++-...
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~ 37 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTP 37 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCC
Confidence 699999999999999999999999999999886543
No 107
>PRK10853 putative reductase; Provisional
Probab=96.76 E-value=0.0029 Score=50.44 Aligned_cols=36 Identities=8% Similarity=0.236 Sum_probs=33.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCC
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~ 169 (224)
+++||+.+.|.-|++++.+|++.|++|+++++-+..
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p 36 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDG 36 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCC
Confidence 389999999999999999999999999999986654
No 108
>PHA02125 thioredoxin-like protein
Probab=96.68 E-value=0.0097 Score=42.88 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=39.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEe
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvD 190 (224)
++.+|+.+||++|+.+...|++ ++++.++++.+. .++. .+..+-..+|++++
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~~--~~~l-~~~~~v~~~PT~~~ 52 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTDE--GVEL-TAKHHIRSLPTLVN 52 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHH--HhheEEeeeCCC--CHHH-HHHcCCceeCeEEC
Confidence 4789999999999999999975 456666666443 3443 45567788999984
No 109
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.61 E-value=0.03 Score=41.18 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=37.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcC----CCcEEEEcCCCCccCHHHHHHhCCCCcccEEEe
Q 027373 134 RLQLFEFEACPFCRRVREAITELD----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~Elg----Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~LvD 190 (224)
.++||+.++|+.|..++..|.+.. +.++.++|..+ +++ .+.++ ..||+|..
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d----~~l-~~~Y~-~~IPVl~~ 55 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED----PEL-FEKYG-YRIPVLHI 55 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT----HHH-HHHSC-TSTSEEEE
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC----HHH-HHHhc-CCCCEEEE
Confidence 389999999999999999999764 44666777632 344 45665 48999966
No 110
>PRK10026 arsenate reductase; Provisional
Probab=96.60 E-value=0.0048 Score=51.02 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=32.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCC
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKG 168 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~ 168 (224)
.|+||+.+.|.-|++++.+|++.|++|+++++-+.
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ 37 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLET 37 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCC
Confidence 58999999999999999999999999999997543
No 111
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.57 E-value=0.0084 Score=45.23 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=43.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-----CCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEee
Q 027373 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 198 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El-----gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ 198 (224)
.|.+|..++||+|..+..++.++ +|.++.++++.. ++.. +..+-..+|.++. +|..++
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~----~e~a-~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF----QDEV-EERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC----HHHH-HHcCCccCCEEEE--CCEEEE
Confidence 48999999999999999988876 577777776532 3333 4567788999976 565554
No 112
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.54 E-value=0.0052 Score=48.15 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=32.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCC
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~ 169 (224)
|+||+.+.|.-|++++.+|++.|++|+++++-+..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~ 35 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTP 35 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCC
Confidence 58999999999999999999999999999986543
No 113
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.47 E-value=0.0059 Score=48.03 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=32.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCc
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSI 170 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~ 170 (224)
|+||+.+.|.-|++++.+|++.|++|+++++-+...
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~ 36 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPP 36 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCc
Confidence 589999999999999999999999999999876543
No 114
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.017 Score=45.63 Aligned_cols=73 Identities=14% Similarity=0.219 Sum_probs=57.3
Q ss_pred CCCcEEEEE-----cCCChhHHHHHHHHHHcC-CCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHH
Q 027373 131 SPTRLQLFE-----FEACPFCRRVREAITELD-LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIV 204 (224)
Q Consensus 131 pe~~L~LYs-----~e~cPfCrrVR~~L~Elg-Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi 204 (224)
.++++.||. ++-|.|+.++--+|...| ++|..++|-.++ .-++-+++.+..-++|.|.. +|+-+..|+-|.
T Consensus 13 ~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~-eiR~~lk~~s~WPT~PQLyi--~GEfvGG~DIv~ 89 (105)
T COG0278 13 KENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDP-EIRQGLKEYSNWPTFPQLYV--NGEFVGGCDIVR 89 (105)
T ss_pred hcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCH-HHHhccHhhcCCCCCceeeE--CCEEeccHHHHH
Confidence 345788885 468999999999999999 799999986553 45566778888999999965 587777776665
Q ss_pred HH
Q 027373 205 NY 206 (224)
Q Consensus 205 ~Y 206 (224)
+-
T Consensus 90 Em 91 (105)
T COG0278 90 EM 91 (105)
T ss_pred HH
Confidence 54
No 115
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.04 E-value=0.058 Score=39.04 Aligned_cols=58 Identities=24% Similarity=0.516 Sum_probs=39.0
Q ss_pred cEEEEEcCCChhHHHHHH----HHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecH
Q 027373 134 RLQLFEFEACPFCRRVRE----AITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYES 200 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~----~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES 200 (224)
.+++| ..+||+|..+.. ++.++|+.++.+++ .+ .+.+ ..++-..+|.|+. ||...+..
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~-~~----~~~~-~~ygv~~vPalvI--ng~~~~~G 63 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDI-ED----FEEI-EKYGVMSVPALVI--NGKVVFVG 63 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEET-TT----HHHH-HHTT-SSSSEEEE--TTEEEEES
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEc-cC----HHHH-HHcCCCCCCEEEE--CCEEEEEe
Confidence 36774 456999996666 55567888888886 21 2334 4577899999977 57665554
No 116
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=95.40 E-value=0.078 Score=42.50 Aligned_cols=70 Identities=23% Similarity=0.514 Sum_probs=49.1
Q ss_pred CChhHHHHHHHHHHc-----CCCcEEEEcCCCCccCHHHHHHhCC-CCcccEEEeCCCCe-------------EeecHHH
Q 027373 142 ACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGG-KEQFPFLIDPNTGV-------------SMYESGD 202 (224)
Q Consensus 142 ~cPfCrrVR~~L~El-----gIpye~i~V~k~~~~~~e~lk~l~p-~~qVP~LvDpndG~-------------~L~ES~a 202 (224)
.||+|..+-=+|.-. .|+++.++.++- ..+.+..++. +...|+||-++ |. .|.+..+
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP---R~~vi~llGE~~QslPvLVL~~-~~~~~~~~~~~~~~rfi~d~~~ 98 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRP---RQAVIALLGEANQSLPVLVLAD-GAPSPDDAGSHGGRRFIDDPRR 98 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCc---hHHHHHHhChhccCCCEEEeCC-CCCCcccccccCCeEEeCCHHH
Confidence 599999998888753 455555555432 2344444444 67799998752 32 6889999
Q ss_pred HHHHHHHHhCCCC
Q 027373 203 IVNYLFQQYGKGR 215 (224)
Q Consensus 203 Ii~YL~e~y~~~~ 215 (224)
|++||.++||-+.
T Consensus 99 I~~~La~r~g~p~ 111 (112)
T PF11287_consen 99 ILRYLAERHGFPR 111 (112)
T ss_pred HHHHHHHHcCCCC
Confidence 9999999998654
No 117
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=94.91 E-value=0.33 Score=35.14 Aligned_cols=72 Identities=15% Similarity=0.404 Sum_probs=46.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc------CCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEe------ecHH
Q 027373 134 RLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM------YESG 201 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El------gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L------~ES~ 201 (224)
-+..|+.+||+.|+..+..|.++ ++.+-.++++. .++.. +...-..+|.++.-.+|..+ .+..
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~----~~~l~-~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 94 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE----NKELC-KKYGVKSVPTIIFFKNGKEVKRYNGPRNAE 94 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT----SHHHH-HHTTCSSSSEEEEEETTEEEEEEESSSSHH
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhhc----cchhh-hccCCCCCCEEEEEECCcEEEEEECCCCHH
Confidence 46777888999999999877654 23344455542 34544 45667889988332355432 3577
Q ss_pred HHHHHHHHH
Q 027373 202 DIVNYLFQQ 210 (224)
Q Consensus 202 aIi~YL~e~ 210 (224)
.|.++|+++
T Consensus 95 ~l~~~i~~~ 103 (103)
T PF00085_consen 95 SLIEFIEKH 103 (103)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcC
Confidence 888888764
No 118
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=94.89 E-value=0.16 Score=40.33 Aligned_cols=62 Identities=11% Similarity=0.301 Sum_probs=38.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc----CCCcEEEEcCCCC---cc----CHHHHHHh---CCCCcccEEEeCCCCe
Q 027373 134 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGS---IR----HREMVRRL---GGKEQFPFLIDPNTGV 195 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El----gIpye~i~V~k~~---~~----~~e~lk~l---~p~~qVP~LvDpndG~ 195 (224)
-+..|+.+|||+|+.+.-.|.+. ++++-.++++.+. .. ..++.... .+-..+|+++.=.+|.
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk 101 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGK 101 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCe
Confidence 47778999999999977666554 5677777776532 11 12333222 2234599885434674
No 119
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=94.71 E-value=0.22 Score=34.54 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=39.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHH-----cCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCe
Q 027373 134 RLQLFEFEACPFCRRVREAITE-----LDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~E-----lgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~ 195 (224)
-+.+|+.++|++|+.+...+.+ .++.+-.+++... .+.. +..+-..+|+++--+.|.
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~-~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN----PELA-EEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC----hhHH-HhcCcccccEEEEEECCE
Confidence 4777788899999999999988 6677777776542 3333 344567799873222454
No 120
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=94.70 E-value=0.054 Score=41.90 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=25.3
Q ss_pred EEcCCChhHHHHHHHHHHcCCCcEEEEcCCCC
Q 027373 138 FEFEACPFCRRVREAITELDLSVEVFPCPKGS 169 (224)
Q Consensus 138 Ys~e~cPfCrrVR~~L~ElgIpye~i~V~k~~ 169 (224)
|+.+.|.-|++++.+|++.||+|+++++.+..
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCC
Confidence 78899999999999999999999999997653
No 121
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=94.69 E-value=0.032 Score=43.41 Aligned_cols=52 Identities=27% Similarity=0.523 Sum_probs=35.8
Q ss_pred cEEEE-EcCCChhHHHHHHHHHHcC-----CCcEEEEcCCCCccCHHHHHHhCCCCcccEEEe
Q 027373 134 RLQLF-EFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID 190 (224)
Q Consensus 134 ~L~LY-s~e~cPfCrrVR~~L~Elg-----Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~LvD 190 (224)
.+++| +.+|||+|+.++.+|+++. +.+..++++. .++ +.+..+-..||+++.
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~----~~~-l~~~~~v~~vPt~~i 81 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE----DKE-KAEKYGVERVPTTIF 81 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc----CHH-HHHHcCCCcCCEEEE
Confidence 46666 5689999999999998764 3445555543 244 445677889998843
No 122
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.15 E-value=0.083 Score=45.33 Aligned_cols=71 Identities=13% Similarity=0.319 Sum_probs=44.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcC-----CCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEee---cHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY---ESGDIVN 205 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~Elg-----Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~---ES~aIi~ 205 (224)
.+++|.-+|||+|..+..+++++- |.+..++++. .++.. +..+-..||+++...+|..+. .-.++.+
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~----~~~~~-~~~~V~~vPtl~i~~~~~~~~G~~~~~~l~~ 210 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE----NPDLA-EKYGVMSVPKIVINKGVEEFVGAYPEEQFLE 210 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC----CHHHH-HHhCCccCCEEEEecCCEEEECCCCHHHHHH
Confidence 577789999999999999888753 4444444332 34433 456777899985533454222 2345566
Q ss_pred HHHH
Q 027373 206 YLFQ 209 (224)
Q Consensus 206 YL~e 209 (224)
+|.+
T Consensus 211 ~l~~ 214 (215)
T TIGR02187 211 YILS 214 (215)
T ss_pred HHHh
Confidence 6643
No 123
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=93.90 E-value=0.36 Score=35.79 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=36.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc------CCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEe
Q 027373 134 RLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El------gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L 197 (224)
-+.+|..+||+.|+.....|.++ ++.+..++++. .++.. +..+-..+|+++.-++|..+
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~----~~~l~-~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE----DQEIA-EAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC----CHHHH-HHCCCeeccEEEEEECCeEE
Confidence 47777889999999999888762 24444455432 23444 34456789987322356543
No 124
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=93.61 E-value=0.39 Score=36.54 Aligned_cols=52 Identities=25% Similarity=0.487 Sum_probs=33.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-------CCCcEEEEcCCCCccCHHHHHHhCCCCcccEE
Q 027373 134 RLQLFEFEACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFL 188 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El-------gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~L 188 (224)
-+..|+.+|||+|+...-.+.++ ++.+-.++++.. ..+..++..+-..+|.+
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~---~~~~~~~~~~v~~~Pti 82 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE---QREFAKEELQLKSFPTI 82 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc---chhhHHhhcCCCcCCEE
Confidence 57888899999999887777654 233444555542 12333334567789977
No 125
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=92.93 E-value=0.62 Score=36.36 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=44.2
Q ss_pred cEEEEEcCCCh------hHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhC---------CCCcccEEEeCCCCeEee
Q 027373 134 RLQLFEFEACP------FCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLG---------GKEQFPFLIDPNTGVSMY 198 (224)
Q Consensus 134 ~L~LYs~e~cP------fCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~---------p~~qVP~LvDpndG~~L~ 198 (224)
.|+||....+. .++++..+|+.++|+|+.++|..++ ..++++++.. +..-.|.|+. ++.-+.
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e-~~r~~mr~~~g~~~~~~~~~~~lpPqiF~--~~~Y~G 78 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDE-EARQWMRENAGPEEKDPGNGKPLPPQIFN--GDEYCG 78 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-H-HHHHHHHHHT--CCCS-TSTT--S-EEEE--TTEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCH-HHHHHHHHhccccccCCCCCCCCCCEEEe--CCEEEe
Confidence 47788755432 7899999999999999999998853 5566676654 2333467764 577777
Q ss_pred cHHHHHHH
Q 027373 199 ESGDIVNY 206 (224)
Q Consensus 199 ES~aIi~Y 206 (224)
+-.++.+.
T Consensus 79 dye~f~ea 86 (99)
T PF04908_consen 79 DYEDFEEA 86 (99)
T ss_dssp EHHHHHHH
T ss_pred eHHHHHHH
Confidence 66665543
No 126
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.21 Score=44.49 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=58.1
Q ss_pred CCcEEEEEc-----CCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHH
Q 027373 132 PTRLQLFEF-----EACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (224)
Q Consensus 132 e~~L~LYs~-----e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~Y 206 (224)
.+++.||.. +.|.|++.+.-.|.++|++|...+|-.++ .-|+-+|+.+..-++|.|.. +|.-+..++-|.+-
T Consensus 138 a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~De-elRqglK~fSdWPTfPQlyI--~GEFiGGlDIl~~m 214 (227)
T KOG0911|consen 138 AKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDE-ELRQGLKEFSDWPTFPQLYV--KGEFIGGLDILKEM 214 (227)
T ss_pred cCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCH-HHHHHhhhhcCCCCccceeE--CCEeccCcHHHHHH
Confidence 457888864 68999999999999999999999997664 45666888999999999965 58777766655544
Q ss_pred H
Q 027373 207 L 207 (224)
Q Consensus 207 L 207 (224)
+
T Consensus 215 ~ 215 (227)
T KOG0911|consen 215 H 215 (227)
T ss_pred h
Confidence 3
No 127
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.41 Score=43.98 Aligned_cols=89 Identities=25% Similarity=0.328 Sum_probs=57.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHcCCC----cEEE-E-cCCCCcc--------------------------CHHHHHH--
Q 027373 133 TRLQLFEFEACPFCRRVREAITELDLS----VEVF-P-CPKGSIR--------------------------HREMVRR-- 178 (224)
Q Consensus 133 ~~L~LYs~e~cPfCrrVR~~L~ElgIp----ye~i-~-V~k~~~~--------------------------~~e~lk~-- 178 (224)
..+-||.--.||+.+|..++++.||++ +..+ + .+..+|. -++.+..
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 469999999999999999999999975 3222 2 1111111 0122221
Q ss_pred --hCCCCcccEEEeCCCC-eEeecHHHHHHHHH---HHhCC-CCCCCCCC
Q 027373 179 --LGGKEQFPFLIDPNTG-VSMYESGDIVNYLF---QQYGK-GRSPSTGL 221 (224)
Q Consensus 179 --l~p~~qVP~LvDpndG-~~L~ES~aIi~YL~---e~y~~-~~~p~~g~ 221 (224)
..++.+||+|.|..+. ++=-||.+||+.+. ..|-. ...|...|
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL 165 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDL 165 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCcccc
Confidence 2357889999986544 45679999999998 44432 44444443
No 128
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.84 E-value=0.085 Score=51.00 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=49.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcC-----CCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeec----HHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE----SGDIV 204 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~Elg-----Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~E----S~aIi 204 (224)
.|++|..+.||||..+..++.++- |..+.++. ...+++. +.+....||.++. +|..+++ -.+|+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~----~~~~~~~-~~~~v~~VP~~~i--~~~~~~~g~~~~~~~~ 191 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG----ALFQDEV-EARNIMAVPTVFL--NGEEFGQGRMTLEEIL 191 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc----hhCHhHH-HhcCCcccCEEEE--CCcEEEecCCCHHHHH
Confidence 599999999999999998887764 44444432 3456655 4667789999976 3545554 45677
Q ss_pred HHHHHHhC
Q 027373 205 NYLFQQYG 212 (224)
Q Consensus 205 ~YL~e~y~ 212 (224)
+.|.+..+
T Consensus 192 ~~~~~~~~ 199 (517)
T PRK15317 192 AKLDTGAA 199 (517)
T ss_pred HHHhcccc
Confidence 77766544
No 129
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=92.70 E-value=0.66 Score=35.79 Aligned_cols=20 Identities=30% Similarity=0.846 Sum_probs=15.8
Q ss_pred cEEEEEcCCChhHHHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAI 153 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L 153 (224)
.+..|+.+|||+|++....+
T Consensus 17 vlv~f~a~wC~~C~~~~~~~ 36 (125)
T cd02951 17 LLLLFSQPGCPYCDKLKRDY 36 (125)
T ss_pred EEEEEeCCCCHHHHHHHHHh
Confidence 57777888999999876543
No 130
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=92.30 E-value=2.3 Score=34.37 Aligned_cols=80 Identities=13% Similarity=0.185 Sum_probs=46.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc------CCCcEEEEcCCCCccCHHHHHHhCCCCcccEE--EeCCCCeEee------c
Q 027373 134 RLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFL--IDPNTGVSMY------E 199 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El------gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~L--vDpndG~~L~------E 199 (224)
-+..|.-+||++|+...-.|.++ .+.+..++++.. ...+..+ ..+-..+|.+ +++ +|..+. .
T Consensus 23 vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~--~~~~~~~-~~~V~~iPt~v~~~~-~G~~v~~~~G~~~ 98 (142)
T cd02950 23 TLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNP--KWLPEID-RYRVDGIPHFVFLDR-EGNEEGQSIGLQP 98 (142)
T ss_pred EEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCc--ccHHHHH-HcCCCCCCEEEEECC-CCCEEEEEeCCCC
Confidence 35556677999999888777654 233444455432 2334443 4566779977 333 564432 2
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 027373 200 SGDIVNYLFQQYGKGRSP 217 (224)
Q Consensus 200 S~aIi~YL~e~y~~~~~p 217 (224)
-.+|.+.|++.......|
T Consensus 99 ~~~l~~~l~~l~~~~~~~ 116 (142)
T cd02950 99 KQVLAQNLDALVAGEPLP 116 (142)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 455667777666554444
No 131
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.20 E-value=0.58 Score=45.84 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=42.2
Q ss_pred cEEEEEcCCChhHHHHHHHHH----Hc-CCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeec
Q 027373 134 RLQLFEFEACPFCRRVREAIT----EL-DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~----El-gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~E 199 (224)
.|++|.-.+||||..+..+++ +. +|.++.+++.. .++.. +.++-..||.++. +|..+++
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~----~~~~~-~~~~v~~vP~~~i--~~~~~~~ 542 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH----FPDLK-DEYGIMSVPAIVV--DDQQVYF 542 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc----cHHHH-HhCCceecCEEEE--CCEEEEe
Confidence 488999999999988777555 44 68888888653 34544 4567888999976 4544443
No 132
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=92.17 E-value=0.29 Score=36.71 Aligned_cols=23 Identities=17% Similarity=0.619 Sum_probs=16.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHHH
Q 027373 133 TRLQLFEFEACPFCRRVREAITE 155 (224)
Q Consensus 133 ~~L~LYs~e~cPfCrrVR~~L~E 155 (224)
..+.+|..++||||++....+.+
T Consensus 7 ~~v~~F~~~~C~~C~~~~~~~~~ 29 (112)
T PF13098_consen 7 PIVVVFTDPWCPYCKKLEKELFP 29 (112)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHHH
T ss_pred EEEEEEECCCCHHHHHHHHHHHH
Confidence 35777888999999999777763
No 133
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=91.76 E-value=0.44 Score=35.54 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=32.4
Q ss_pred cEEEEEcCCChhHHHHHHHH------HH-c--CCCcEEEEcCCCCccCHHHHHHhCCCCcccEE
Q 027373 134 RLQLFEFEACPFCRRVREAI------TE-L--DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFL 188 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L------~E-l--gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~L 188 (224)
-+..|+.+||++|+.....+ .+ . ++.+-.++++.++....++. +..+-..+|++
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-~~~~i~~~Pti 76 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALL-KRFGVFGPPTY 76 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHH-HHcCCCCCCEE
Confidence 47778889999999887443 11 1 34444445544322234444 45567789977
No 134
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.69 E-value=0.12 Score=50.02 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=49.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCC-----CcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeec----HHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDL-----SVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE----SGDIV 204 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgI-----pye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~E----S~aIi 204 (224)
.+++|....||||..|..++.++-+ ..+.++. ...+++. +.+....||.++. +|..+++ -.+++
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~----~~~~~~~-~~~~v~~VP~~~i--~~~~~~~g~~~~~~~~ 192 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDG----ALFQDEV-EALGIQGVPAVFL--NGEEFHNGRMDLAELL 192 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEc----hhCHHHH-HhcCCcccCEEEE--CCcEEEecCCCHHHHH
Confidence 5899999999999999999887643 4444332 3456655 4566779999976 3545555 34566
Q ss_pred HHHHHHhC
Q 027373 205 NYLFQQYG 212 (224)
Q Consensus 205 ~YL~e~y~ 212 (224)
+.|.+.++
T Consensus 193 ~~l~~~~~ 200 (515)
T TIGR03140 193 EKLEETAG 200 (515)
T ss_pred HHHhhccC
Confidence 66665543
No 135
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=91.47 E-value=0.56 Score=36.75 Aligned_cols=60 Identities=15% Similarity=0.270 Sum_probs=35.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc------CCCcEEEEcCCCCccCHHHHHHhCCCC-cccEE--EeCCCCeEe
Q 027373 134 RLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPKGSIRHREMVRRLGGKE-QFPFL--IDPNTGVSM 197 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El------gIpye~i~V~k~~~~~~e~lk~l~p~~-qVP~L--vDpndG~~L 197 (224)
-+..|+-+||++|+.....+.+. +..|..++++.......+ ..+..+ .+|++ +++ +|..+
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~---~~~~~g~~vPt~~f~~~-~Gk~~ 90 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDE---EFSPDGGYIPRILFLDP-SGDVH 90 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhh---hcccCCCccceEEEECC-CCCCc
Confidence 46667788999999997777662 345666666654322112 223332 49977 344 56543
No 136
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=91.40 E-value=0.87 Score=36.50 Aligned_cols=65 Identities=9% Similarity=0.291 Sum_probs=38.0
Q ss_pred EEEEEcCCChhHHHHHH-------HHHHcCCCcEEEEcCCCCccC-----HHHHHHhCCCCcccEE--EeCCCCeEeecH
Q 027373 135 LQLFEFEACPFCRRVRE-------AITELDLSVEVFPCPKGSIRH-----REMVRRLGGKEQFPFL--IDPNTGVSMYES 200 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~-------~L~ElgIpye~i~V~k~~~~~-----~e~lk~l~p~~qVP~L--vDpndG~~L~ES 200 (224)
+..++..||++|++... +...++-.|..+.++.+.... .+..+.+++...+|++ +++ +|..++.+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~-~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTP-DLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECC-CCCEEeee
Confidence 44567789999998743 333334457776665543111 1112223466779977 455 68887766
No 137
>PTZ00051 thioredoxin; Provisional
Probab=91.06 E-value=1.4 Score=32.06 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=36.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-----CCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeE
Q 027373 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El-----gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~ 196 (224)
-+..|+.+||+.|+.....|..+ ++.+-.++++. ..+.. +..+-..+|+++.-.+|..
T Consensus 21 vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~----~~~~~-~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 21 VIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE----LSEVA-EKENITSMPTFKVFKNGSV 83 (98)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc----hHHHH-HHCCCceeeEEEEEeCCeE
Confidence 46677888999999998877764 34444445432 23444 3456678998733235643
No 138
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=90.96 E-value=1.3 Score=33.29 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=33.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc------------CCCcEEEEcCCCCccCHHHHHHhCCCCcccEEE
Q 027373 134 RLQLFEFEACPFCRRVREAITEL------------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El------------gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~Lv 189 (224)
-+..|+.+||++|+.....+.++ .+.+-.++++.. ++.. +..+-..+|.++
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~----~~l~-~~~~v~~~Ptl~ 83 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE----SDIA-DRYRINKYPTLK 83 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC----HHHH-HhCCCCcCCEEE
Confidence 46677788999999988777543 133444555432 3433 455678899884
No 139
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=90.90 E-value=0.59 Score=33.60 Aligned_cols=72 Identities=14% Similarity=0.213 Sum_probs=41.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc----C--CCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEe------ecHH
Q 027373 134 RLQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM------YESG 201 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El----g--Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L------~ES~ 201 (224)
-+..|+.+||+.|+.+...|.++ + +.+-.++++.. .+.. +..+-..+|.++.-.+|..+ ....
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~----~~~~-~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~ 91 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN----PDIA-AKYGIRSIPTLLLFKNGKEVDRSVGALPKA 91 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC----HHHH-HHcCCCcCCEEEEEeCCcEeeeecCCCCHH
Confidence 35566678999999998777653 2 34444454432 3333 34456789987322245321 1246
Q ss_pred HHHHHHHHH
Q 027373 202 DIVNYLFQQ 210 (224)
Q Consensus 202 aIi~YL~e~ 210 (224)
+|..+|.++
T Consensus 92 ~l~~~l~~~ 100 (101)
T TIGR01068 92 ALKQLINKN 100 (101)
T ss_pred HHHHHHHhh
Confidence 777777653
No 140
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=90.43 E-value=0.76 Score=33.24 Aligned_cols=71 Identities=17% Similarity=0.305 Sum_probs=40.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcC--------CCcEEEEcCCCCccCHHHHHHhCCCCcccEE-EeCCCCe-Eee----c
Q 027373 134 RLQLFEFEACPFCRRVREAITELD--------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFL-IDPNTGV-SMY----E 199 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~Elg--------Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~L-vDpndG~-~L~----E 199 (224)
.+.+|..+||+.|+.....+.+.. +.+-.++++. ..+.. +..+-..+|.+ +..+++. .-+ .
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~-~~~~i~~~P~~~~~~~~~~~~~~~g~~~ 90 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA----EKDLA-SRFGVSGFPTIKFFPKGKKPVDYEGGRD 90 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc----hHHHH-HhCCCCcCCEEEEecCCCcceeecCCCC
Confidence 488888999999998777665532 2233334432 23433 44567789977 3333342 112 2
Q ss_pred HHHHHHHHHH
Q 027373 200 SGDIVNYLFQ 209 (224)
Q Consensus 200 S~aIi~YL~e 209 (224)
...+..+|++
T Consensus 91 ~~~l~~~i~~ 100 (102)
T TIGR01126 91 LEAIVEFVNE 100 (102)
T ss_pred HHHHHHHHHh
Confidence 3456666654
No 141
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=90.30 E-value=0.48 Score=34.43 Aligned_cols=60 Identities=15% Similarity=0.096 Sum_probs=37.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcC----CCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeE
Q 027373 134 RLQLFEFEACPFCRRVREAITELD----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~Elg----Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~ 196 (224)
-+..|+.+||+.|++....|.++. ..+....++.. ...+..+ ..+-..+|+++.-++|..
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~--~~~~~~~-~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE--ELPEISE-KFEITAVPTFVFFRNGTI 80 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc--cCHHHHH-hcCCccccEEEEEECCEE
Confidence 466777889999999988887642 33455555433 2344443 345677997732235654
No 142
>PRK09381 trxA thioredoxin; Provisional
Probab=90.09 E-value=3.6 Score=30.73 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=40.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc----C--CCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEee------cHH
Q 027373 134 RLQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY------ESG 201 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El----g--Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~------ES~ 201 (224)
-+..|..+|||.|+...-.|+++ + +.+-.++++.. +... +..+-..+|+++.-++|..+. .-.
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~----~~~~-~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~ 98 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN----PGTA-PKYGIRGIPTLLLFKNGEVAATKVGALSKG 98 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC----hhHH-HhCCCCcCCEEEEEeCCeEEEEecCCCCHH
Confidence 35666778999999988776653 2 23333444432 2333 344567899873223565432 244
Q ss_pred HHHHHHHH
Q 027373 202 DIVNYLFQ 209 (224)
Q Consensus 202 aIi~YL~e 209 (224)
.|..+|++
T Consensus 99 ~l~~~i~~ 106 (109)
T PRK09381 99 QLKEFLDA 106 (109)
T ss_pred HHHHHHHH
Confidence 56666654
No 143
>PHA02278 thioredoxin-like protein
Probab=90.01 E-value=1.8 Score=33.34 Aligned_cols=63 Identities=14% Similarity=0.245 Sum_probs=38.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc----C--CCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEe
Q 027373 134 RLQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El----g--Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L 197 (224)
-+.-|+-+||+.|+...-.++++ + +.+..++++......++ +.+...-..+|+++.=.+|..+
T Consensus 17 vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~-l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 17 VIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREK-AVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHH-HHHHCCCccccEEEEEECCEEE
Confidence 35556778999999888777654 1 34555666654222233 3345567789988432367554
No 144
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=89.62 E-value=4 Score=35.09 Aligned_cols=60 Identities=18% Similarity=0.337 Sum_probs=33.8
Q ss_pred EEEEEcCCChhHHHHHHH----HHHcCCCcEEEEcCCCC-------c-cCHHHHHHhCCC--CcccE--EEeCCCC
Q 027373 135 LQLFEFEACPFCRRVREA----ITELDLSVEVFPCPKGS-------I-RHREMVRRLGGK--EQFPF--LIDPNTG 194 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~----L~ElgIpye~i~V~k~~-------~-~~~e~lk~l~p~--~qVP~--LvDpndG 194 (224)
+.+|.-.|||+|++..-. .++.|+.+.-+.++... . .....+.+..+. ..+|. |||+++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 666777899999998544 44457665556655331 0 112223333442 47884 4777433
No 145
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=89.45 E-value=1.3 Score=37.89 Aligned_cols=77 Identities=18% Similarity=0.319 Sum_probs=47.9
Q ss_pred CcEEEEEc---CCChhHHHHHHHHHHcC-----CCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEe----ec-
Q 027373 133 TRLQLFEF---EACPFCRRVREAITELD-----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM----YE- 199 (224)
Q Consensus 133 ~~L~LYs~---e~cPfCrrVR~~L~Elg-----Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L----~E- 199 (224)
..+.+|.. +|||.|+.+.-+|+++. +.+..++++.+ ..++ +.+..+-..+|+++.=++|..+ .+
T Consensus 21 ~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~--~~~~-l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 21 VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP--EDKE-EAEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc--ccHH-HHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 35778877 89999999999998773 33445555533 2344 3356678889988432244332 12
Q ss_pred --HHHHHHHHHHHhC
Q 027373 200 --SGDIVNYLFQQYG 212 (224)
Q Consensus 200 --S~aIi~YL~e~y~ 212 (224)
-..+..+|+..++
T Consensus 98 ~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 98 PAGYEFAALIEDIVR 112 (215)
T ss_pred CCHHHHHHHHHHHHH
Confidence 3455667666553
No 146
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=89.29 E-value=0.22 Score=40.49 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=16.3
Q ss_pred CCCCcccEEEeCCCCeEeecHHHHHHHHHHHhCC
Q 027373 180 GGKEQFPFLIDPNTGVSMYESGDIVNYLFQQYGK 213 (224)
Q Consensus 180 ~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~~ 213 (224)
+....-|-|.+..+|+.++|..||++||..-|..
T Consensus 31 ~ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 31 NEDESGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp -SS--S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred CCccccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 3344458887777999999999999999988754
No 147
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=89.17 E-value=0.7 Score=35.44 Aligned_cols=71 Identities=14% Similarity=0.290 Sum_probs=40.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-------CCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEe------ecH
Q 027373 134 RLQLFEFEACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM------YES 200 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El-------gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L------~ES 200 (224)
-+..|+.+||+.|+.....+.++ ++.+-.++++.. ++.. +..+-..+|.++.-++|... ...
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~----~~l~-~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~ 101 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE----RRLA-RKLGAHSVPAIVGIINGQVTFYHDSSFTK 101 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc----HHHH-HHcCCccCCEEEEEECCEEEEEecCCCCH
Confidence 46677788999998776555433 344444455432 2333 34567889987421256432 124
Q ss_pred HHHHHHHHH
Q 027373 201 GDIVNYLFQ 209 (224)
Q Consensus 201 ~aIi~YL~e 209 (224)
..|.++|.+
T Consensus 102 ~~l~~~i~~ 110 (111)
T cd02963 102 QHVVDFVRK 110 (111)
T ss_pred HHHHHHHhc
Confidence 556666643
No 148
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.63 E-value=1.3 Score=41.06 Aligned_cols=80 Identities=23% Similarity=0.312 Sum_probs=53.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHcCCC----cEEEE--cCCCCcc--------------CHHHHH--------HhCCCCc
Q 027373 133 TRLQLFEFEACPFCRRVREAITELDLS----VEVFP--CPKGSIR--------------HREMVR--------RLGGKEQ 184 (224)
Q Consensus 133 ~~L~LYs~e~cPfCrrVR~~L~ElgIp----ye~i~--V~k~~~~--------------~~e~lk--------~l~p~~q 184 (224)
....||..-+||+.+|..++=+.||++ +.++. ++..+|. .-+.+. ...+..+
T Consensus 50 GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvT 129 (324)
T COG0435 50 GRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVT 129 (324)
T ss_pred CeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCcee
Confidence 369999999999999999999999875 22221 1111111 011121 1346789
Q ss_pred ccEEEeCCCC-eEeecHHHHHHHHHHHhC
Q 027373 185 FPFLIDPNTG-VSMYESGDIVNYLFQQYG 212 (224)
Q Consensus 185 VP~LvDpndG-~~L~ES~aIi~YL~e~y~ 212 (224)
||+|.|..+. ++=-||.+||+-|...|.
T Consensus 130 VPVLwDk~~~tIVnNES~eIirm~N~aFd 158 (324)
T COG0435 130 VPVLWDKKTQTIVNNESAEIIRMFNSAFD 158 (324)
T ss_pred EEEEEecCCCeeecCCcHHHHHHHHHHHH
Confidence 9999986555 456799999999876653
No 149
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=88.57 E-value=1.4 Score=32.45 Aligned_cols=70 Identities=16% Similarity=0.311 Sum_probs=40.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcC-------CCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeE-ee----cHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELD-------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS-MY----ESG 201 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~Elg-------Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~-L~----ES~ 201 (224)
.+..|+.+|||+|+...-.+.++. +.+-.++++. .++.. +...-..+|.++.-.+|.. .+ ...
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~----~~~~~-~~~~i~~~Pt~~~~~~g~~~~~~G~~~~~ 93 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ----EPGLS-GRFFVTALPTIYHAKDGVFRRYQGPRDKE 93 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC----CHhHH-HHcCCcccCEEEEeCCCCEEEecCCCCHH
Confidence 577888889999998877766542 3333344432 23333 3455778998843224532 12 245
Q ss_pred HHHHHHH
Q 027373 202 DIVNYLF 208 (224)
Q Consensus 202 aIi~YL~ 208 (224)
+|.++|.
T Consensus 94 ~l~~~i~ 100 (101)
T cd02994 94 DLISFIE 100 (101)
T ss_pred HHHHHHh
Confidence 5666654
No 150
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=88.49 E-value=0.55 Score=36.47 Aligned_cols=60 Identities=12% Similarity=0.038 Sum_probs=38.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-----CCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEee
Q 027373 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 198 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El-----gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ 198 (224)
-+..|+.+||+.|+.+...|+++ ++.+-.++++. .++ +.+..+-..+|+++.=.+|..+.
T Consensus 25 vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~----~~~-l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 25 VVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK----APF-LVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc----CHH-HHHHCCCccCCEEEEEECCEEEE
Confidence 46667779999999999888774 34343344433 233 33456678899884323576544
No 151
>PRK10996 thioredoxin 2; Provisional
Probab=88.38 E-value=4.8 Score=32.24 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=44.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc----CCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEe------ecHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM------YESGDI 203 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El----gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L------~ES~aI 203 (224)
-+..|+-+||+.|+.....|.+. +-.+.++.++.+. .++.. +..+-..+|.++.-.+|..+ .....|
T Consensus 55 vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~--~~~l~-~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l 131 (139)
T PRK10996 55 VVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA--ERELS-ARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPF 131 (139)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC--CHHHH-HhcCCCccCEEEEEECCEEEEEEcCCCCHHHH
Confidence 46677788999999877666553 2234444444332 34444 45567789988332356543 224567
Q ss_pred HHHHHHH
Q 027373 204 VNYLFQQ 210 (224)
Q Consensus 204 i~YL~e~ 210 (224)
..+|++.
T Consensus 132 ~~~l~~~ 138 (139)
T PRK10996 132 DSWLNEA 138 (139)
T ss_pred HHHHHHh
Confidence 7777754
No 152
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=88.24 E-value=1.3 Score=38.99 Aligned_cols=37 Identities=16% Similarity=0.543 Sum_probs=27.0
Q ss_pred CCCCcEEEEEcCCChhHHHHHHHHHHc---CCCcEEEEcC
Q 027373 130 DSPTRLQLFEFEACPFCRRVREAITEL---DLSVEVFPCP 166 (224)
Q Consensus 130 ~pe~~L~LYs~e~cPfCrrVR~~L~El---gIpye~i~V~ 166 (224)
.....|.+|+.+.||||++...-|.++ ||.+.+...+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P 145 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFP 145 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEecc
Confidence 344568899999999999999888775 3555444444
No 153
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=87.80 E-value=3.4 Score=30.01 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=34.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc----C----CCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCe
Q 027373 134 RLQLFEFEACPFCRRVREAITEL----D----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGV 195 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El----g----Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~ 195 (224)
-+.+|.-+|||+|+.....+.++ . +.+-.+++..+ ......+ ..+-..+|.++.-.+|.
T Consensus 20 ~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~-~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 20 VLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP--EHDALKE-EYNVKGFPTFKYFENGK 86 (104)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC--ccHHHHH-hCCCccccEEEEEeCCC
Confidence 47777888999999886555432 1 22333455432 2344443 44567899883323454
No 154
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=87.44 E-value=1.5 Score=39.03 Aligned_cols=36 Identities=14% Similarity=0.421 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHH---cC-CCcEEEEcC
Q 027373 131 SPTRLQLFEFEACPFCRRVREAITE---LD-LSVEVFPCP 166 (224)
Q Consensus 131 pe~~L~LYs~e~cPfCrrVR~~L~E---lg-Ipye~i~V~ 166 (224)
.+..|.+|....||||++.+..+.+ .| |.+.+++++
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~~ 156 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILVG 156 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEecc
Confidence 3345888899999999999887654 23 666666553
No 155
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=87.33 E-value=3.7 Score=30.90 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=36.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-----CCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEe
Q 027373 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El-----gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L 197 (224)
-+..|.-+||+.|+...-.|.++ ++.+-.++++... ...++. +..+-..+|+++.-.+|..+
T Consensus 18 vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~-~~~~l~-~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 18 VVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND-STMELC-RREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh-HHHHHH-HHcCCCcCCEEEEEeCCeEE
Confidence 35666778999999888777654 3444444544321 112433 44566779977332356543
No 156
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=86.65 E-value=1.2 Score=33.39 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=39.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-------CCCcEE--EEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEe-----ec
Q 027373 134 RLQLFEFEACPFCRRVREAITEL-------DLSVEV--FPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM-----YE 199 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El-------gIpye~--i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L-----~E 199 (224)
-+..|..+|||+|++..-.|.++ +..+.. +++.. .++.. +..+-..+|.++.-++|... ..
T Consensus 18 vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~----~~~~~-~~~~I~~~Pt~~l~~~~~~~~~~G~~~ 92 (104)
T cd03000 18 WLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA----YSSIA-SEFGVRGYPTIKLLKGDLAYNYRGPRT 92 (104)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc----CHhHH-hhcCCccccEEEEEcCCCceeecCCCC
Confidence 46777788999999777666543 222333 34432 23333 34556779987322234221 23
Q ss_pred HHHHHHHHHH
Q 027373 200 SGDIVNYLFQ 209 (224)
Q Consensus 200 S~aIi~YL~e 209 (224)
..+|.+++.+
T Consensus 93 ~~~l~~~~~~ 102 (104)
T cd03000 93 KDDIVEFANR 102 (104)
T ss_pred HHHHHHHHHh
Confidence 4566666654
No 157
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=86.42 E-value=1.6 Score=36.65 Aligned_cols=37 Identities=24% Similarity=0.688 Sum_probs=27.7
Q ss_pred CCCcEEEEEcCCChhHHHHHHHHHH--cCCCcEEEEcCC
Q 027373 131 SPTRLQLFEFEACPFCRRVREAITE--LDLSVEVFPCPK 167 (224)
Q Consensus 131 pe~~L~LYs~e~cPfCrrVR~~L~E--lgIpye~i~V~k 167 (224)
.+..+.+|..+.||||++....+.+ .++.+.++.++.
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~ 115 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPI 115 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCc
Confidence 3446888999999999999999984 355555555554
No 158
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=86.09 E-value=1.7 Score=32.69 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=33.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc----C---CCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeE
Q 027373 134 RLQLFEFEACPFCRRVREAITEL----D---LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El----g---Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~ 196 (224)
-+..|+-+||+.|+.....|.+. + +.+..++++ ..+.. +...-..+|+++.-.+|..
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-----~~~~~-~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-----TIDTL-KRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-----CHHHH-HHcCCCcCcEEEEEECCEE
Confidence 36667788999999888777653 2 222233333 23334 3456778997732225653
No 159
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=85.56 E-value=4.1 Score=31.02 Aligned_cols=68 Identities=19% Similarity=0.370 Sum_probs=40.1
Q ss_pred EEEcCCChhHHHHHHHHHHcCC--CcEEEEcCCCCccCHHHHHH--hC---CCCcccEEEeCCCCe-EeecHHHHHHHHH
Q 027373 137 LFEFEACPFCRRVREAITELDL--SVEVFPCPKGSIRHREMVRR--LG---GKEQFPFLIDPNTGV-SMYESGDIVNYLF 208 (224)
Q Consensus 137 LYs~e~cPfCrrVR~~L~ElgI--pye~i~V~k~~~~~~e~lk~--l~---p~~qVP~LvDpndG~-~L~ES~aIi~YL~ 208 (224)
||+...||+|......+..++. .++.+++... ...+.++. +. -...+ .+++ +|. ...++.|+++-+.
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l-~~~~--~g~~~~~G~~A~~~l~~ 75 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSE--PDQALLASYGISPEDADSRL-HLID--DGERVYRGSDAVLRLLR 75 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCCh--hhhhHHHhcCcCHHHHcCee-EEec--CCCEEEEcHHHHHHHHH
Confidence 3556679999999999999976 4666666221 11111111 11 12222 2333 465 8899999988765
Q ss_pred H
Q 027373 209 Q 209 (224)
Q Consensus 209 e 209 (224)
.
T Consensus 76 ~ 76 (114)
T PF04134_consen 76 R 76 (114)
T ss_pred H
Confidence 4
No 160
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=85.26 E-value=3.9 Score=32.67 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=31.9
Q ss_pred CCChhHHHHHHHHHH----cC--CCcEEEEcCCCC-c--cCHHHHHHhCCCC-cccEEEeCCCCeEeecHH
Q 027373 141 EACPFCRRVREAITE----LD--LSVEVFPCPKGS-I--RHREMVRRLGGKE-QFPFLIDPNTGVSMYESG 201 (224)
Q Consensus 141 e~cPfCrrVR~~L~E----lg--Ipye~i~V~k~~-~--~~~e~lk~l~p~~-qVP~LvDpndG~~L~ES~ 201 (224)
.|||.|+.+.-.|++ .. +.+-.++++... + ...++. ....-. .+|+++.-++|..+.|..
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~-~~~~I~~~iPT~~~~~~~~~l~~~~ 107 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR-TDPKLTTGVPTLLRWKTPQRLVEDE 107 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH-hccCcccCCCEEEEEcCCceecchh
Confidence 699999977665544 33 444445554421 1 123433 223333 699884334565555543
No 161
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=85.16 E-value=1.3 Score=31.22 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=33.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHcC------CCcEEEEcCCCCccCHHHHHHhCCCCcccEE
Q 027373 133 TRLQLFEFEACPFCRRVREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFL 188 (224)
Q Consensus 133 ~~L~LYs~e~cPfCrrVR~~L~Elg------Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~L 188 (224)
.-+.+|.-++|++|+.....+.+.- -.+....++... ..... +..+-..+|.+
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~-~~~~i~~~Pt~ 75 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA--NNDLC-SEYGVRGYPTI 75 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc--hHHHH-HhCCCCCCCEE
Confidence 4577888889999999888776531 223333443222 23433 34556789977
No 162
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=84.89 E-value=2.7 Score=37.05 Aligned_cols=77 Identities=17% Similarity=0.249 Sum_probs=46.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc----CCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEe------ecHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM------YESGDI 203 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El----gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L------~ES~aI 203 (224)
-+..|+-+||++|+...-.++++ .-.+.+..++-+ ..++. .+..+-..+|.++.=++|..+ ....+|
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~--~~~~l-~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L 131 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT--RALNL-AKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKL 131 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc--ccHHH-HHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHH
Confidence 36677788999999887776654 211233333322 22343 345567789977321246432 246788
Q ss_pred HHHHHHHhCC
Q 027373 204 VNYLFQQYGK 213 (224)
Q Consensus 204 i~YL~e~y~~ 213 (224)
.+|+.+.|..
T Consensus 132 ~~fi~~~~~~ 141 (224)
T PTZ00443 132 AAFALGDFKK 141 (224)
T ss_pred HHHHHHHHHh
Confidence 8999988853
No 163
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=84.67 E-value=7.1 Score=31.28 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=13.7
Q ss_pred EEEEEcCCChhHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAIT 154 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ 154 (224)
+..|...+||+|+.....|.
T Consensus 65 ~l~f~a~~C~~C~~~~~~l~ 84 (173)
T PRK03147 65 FLNFWGTWCKPCEKEMPYMN 84 (173)
T ss_pred EEEEECCcCHHHHHHHHHHH
Confidence 44555779999998655443
No 164
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=84.47 E-value=4.6 Score=31.66 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=32.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcC------CCcEEEEcCCCCccCHHHHHHhCCCCcccEE
Q 027373 134 RLQLFEFEACPFCRRVREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFL 188 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~Elg------Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~L 188 (224)
-+..|+-+||++|+...-.++++. +.+-.++|+.. .+...+...-..+|.|
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~----~~l~~~~~~I~~~PTl 88 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP----QGKCRKQKHFFYFPVI 88 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC----hHHHHHhcCCcccCEE
Confidence 477788899999999988887763 22333455432 2333223445679977
No 165
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=84.38 E-value=1.4 Score=35.21 Aligned_cols=52 Identities=10% Similarity=0.194 Sum_probs=32.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCC----cEEEEcCCCCccCHHHHHHhCCCCcccEEE
Q 027373 135 LQLFEFEACPFCRRVREAITELDLS----VEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIp----ye~i~V~k~~~~~~e~lk~l~p~~qVP~Lv 189 (224)
+.-|+-+|||.|+...-.|+++--. .....|+-+. .++ +.+..+-..+|+++
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~--~~~-la~~~~V~~iPTf~ 73 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE--VPD-FNKMYELYDPPTVM 73 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC--CHH-HHHHcCCCCCCEEE
Confidence 5557888999999998888765322 2233333332 234 44556677899873
No 166
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=84.19 E-value=5 Score=29.60 Aligned_cols=50 Identities=16% Similarity=0.305 Sum_probs=31.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcC------CCcEEEEcCCCCccCHHHHHHhCCCCcccEE
Q 027373 134 RLQLFEFEACPFCRRVREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFL 188 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~Elg------Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~L 188 (224)
-+..|+.+||+.|++..-.++++- +.+-.++++. .++.. +..+-..+|.+
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~----~~~~~-~~~~i~~~Pt~ 77 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK----YESLC-QQANIRAYPTI 77 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc----hHHHH-HHcCCCcccEE
Confidence 466777889999998877776542 3333445543 23333 44567789977
No 167
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=83.06 E-value=1.4 Score=33.65 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=35.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-----CCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEee
Q 027373 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMY 198 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El-----gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ 198 (224)
-+..|+.+||+.|+.+...|+++ ++.+-.++++.. + +.+..+-..+|+++.=.+|..+.
T Consensus 27 vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~-l~~~~~i~~~Pt~~~f~~G~~v~ 90 (113)
T cd02957 27 VVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-----F-LVNYLDIKVLPTLLVYKNGELID 90 (113)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----H-HHHhcCCCcCCEEEEEECCEEEE
Confidence 35567778999999998888764 333333343321 2 44455667899884323565443
No 168
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=82.79 E-value=11 Score=31.32 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=49.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcc-c--EEEeCCCCeEeecHHHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQF-P--FLIDPNTGVSMYESGDIVNYLFQQ 210 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qV-P--~LvDpndG~~L~ES~aIi~YL~e~ 210 (224)
+++++.-.||+|-....+|.+++-.-.+...+..++.....++ ..|...- + ++.+ .+|....+|+|+++-+...
T Consensus 10 ~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~-~~~l~~~~~~s~~~~-~~g~~~~~sdA~~~i~~~L 86 (137)
T COG3011 10 LVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLE-AAGLDPEDVDSVLLV-EAGQLLVGSDAAIRILRLL 86 (137)
T ss_pred EEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHh-hcCCChhhhheeeEe-cCCceEeccHHHHHHHHHC
Confidence 5555555799999999999999887666655554444555553 3332111 1 2223 2689999999999987653
No 169
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.67 E-value=2.9 Score=37.42 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=50.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQQ 210 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e~ 210 (224)
.+-|+.+ .-|..|..+|..-++||.++-.+.- ++ +.|.|+||+|-. +...+.|-..|+.+...+
T Consensus 28 QiLl~d~---ascLAVqtfLrMcnLPf~v~~~~Na-----ef---mSP~G~vPllr~--g~~~~aef~pIV~fVeak 91 (257)
T KOG3027|consen 28 QILLPDN---ASCLAVQTFLRMCNLPFNVRQRANA-----EF---MSPGGKVPLLRI--GKTLFAEFEPIVDFVEAK 91 (257)
T ss_pred ccccccc---hhHHHHHHHHHHcCCCceeeecCCc-----cc---cCCCCCCceeee--cchhhhhhhHHHHHHHHh
Confidence 3555554 4699999999999999998876533 32 578999999965 467789999999998765
No 170
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=82.59 E-value=4.3 Score=31.29 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=13.7
Q ss_pred EEEEEcCCChhHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAIT 154 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ 154 (224)
+..|...|||.|++..-.|.
T Consensus 22 ll~Fwa~wC~~C~~~~p~l~ 41 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKLV 41 (131)
T ss_pred EEEEECCCChHHHHHhHHHH
Confidence 44445679999997666554
No 171
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=81.95 E-value=4.2 Score=34.43 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=25.2
Q ss_pred CcEEEE-EcCCChhHHH-------HHHHHHHcCCCcEEEEcCCC
Q 027373 133 TRLQLF-EFEACPFCRR-------VREAITELDLSVEVFPCPKG 168 (224)
Q Consensus 133 ~~L~LY-s~e~cPfCrr-------VR~~L~ElgIpye~i~V~k~ 168 (224)
+-+.|| +..|||.||. +.+.+++.+-++|++.|+.+
T Consensus 34 KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D 77 (157)
T KOG2501|consen 34 KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD 77 (157)
T ss_pred cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC
Confidence 345565 5679999974 55556666778999888654
No 172
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=81.37 E-value=8 Score=31.91 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=15.5
Q ss_pred cEEEE-EcCCChhHHHHHHHHHH
Q 027373 134 RLQLF-EFEACPFCRRVREAITE 155 (224)
Q Consensus 134 ~L~LY-s~e~cPfCrrVR~~L~E 155 (224)
.+.|| .-.|||.|++..-.|.+
T Consensus 27 ~vlL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 27 VLLLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred EEEEEEECCCChhHHHHHHHHHH
Confidence 34444 45689999998877765
No 173
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=81.09 E-value=8 Score=28.50 Aligned_cols=52 Identities=21% Similarity=0.457 Sum_probs=32.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc----C--CCcEEEEcCCCCccCHHHHHHhCCCCcccEE
Q 027373 134 RLQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFL 188 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El----g--Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~L 188 (224)
-+..|+.+||++|+.....+.++ + +.+-.++++.+ ..++.. +..+-..+|.+
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~--~~~~~~-~~~~i~~~Pt~ 78 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDED--KNKPLC-GKYGVQGFPTL 78 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcc--ccHHHH-HHcCCCcCCEE
Confidence 57777888999999887666654 2 23333455542 234444 34556789977
No 174
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=81.00 E-value=9.7 Score=37.90 Aligned_cols=73 Identities=12% Similarity=0.193 Sum_probs=42.4
Q ss_pred EEEEEcCCChhHHHHHHH-H------HHc-CCCcEEEEcCCCCccCHHHHHHhCCCCcccEE--EeCCCCeEe-------
Q 027373 135 LQLFEFEACPFCRRVREA-I------TEL-DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFL--IDPNTGVSM------- 197 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~-L------~El-gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~L--vDpndG~~L------- 197 (224)
+.-|+-+||+.|+..... + +++ ++.+-.+|++.++....+..+ ..+-..+|++ +|+ +|..+
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~-~~~v~g~Pt~~~~~~-~G~~i~~~r~~G 555 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLK-HYNVLGLPTILFFDA-QGQEIPDARVTG 555 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHH-HcCCCCCCEEEEECC-CCCCcccccccC
Confidence 555677899999976432 1 222 333334566554434455544 4566779977 443 45432
Q ss_pred -ecHHHHHHHHHH
Q 027373 198 -YESGDIVNYLFQ 209 (224)
Q Consensus 198 -~ES~aIi~YL~e 209 (224)
.+..++.++|++
T Consensus 556 ~~~~~~f~~~L~~ 568 (571)
T PRK00293 556 FMDAAAFAAHLRQ 568 (571)
T ss_pred CCCHHHHHHHHHH
Confidence 356677888765
No 175
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=80.98 E-value=7.2 Score=35.17 Aligned_cols=60 Identities=17% Similarity=0.340 Sum_probs=35.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHH----cCCCcEEEEcCCCCc-------cCHHHHHHhCCCCcccEE--EeCCCC
Q 027373 134 RLQLFEFEACPFCRRVREAITE----LDLSVEVFPCPKGSI-------RHREMVRRLGGKEQFPFL--IDPNTG 194 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~E----lgIpye~i~V~k~~~-------~~~e~lk~l~p~~qVP~L--vDpndG 194 (224)
-+..|.-.|||+|+...-.|.+ .|+.+..+.++.+.. ...... +..+-..+|.+ +++++|
T Consensus 169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la-~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 169 GLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQA-QQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred EEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHH-HHcCCCcCCeEEEEECCCC
Confidence 3555666799999987766654 465555566554211 112323 34556789977 665455
No 176
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=80.96 E-value=2.1 Score=30.01 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=25.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHc------CCCcEEEEcCCC
Q 027373 135 LQLFEFEACPFCRRVREAITEL------DLSVEVFPCPKG 168 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~El------gIpye~i~V~k~ 168 (224)
|.+|....||+|......|.+. ++.++.+++...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 40 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLL 40 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccC
Confidence 4678888999999999988875 456666666554
No 177
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=80.46 E-value=6.7 Score=32.98 Aligned_cols=30 Identities=23% Similarity=0.536 Sum_probs=18.4
Q ss_pred EEEEEcCCChhHHHHHHHH----HHcCCCcEEEE
Q 027373 135 LQLFEFEACPFCRRVREAI----TELDLSVEVFP 164 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L----~ElgIpye~i~ 164 (224)
+..|...|||.|++..-.+ ++.++.+..+.
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 4455667999998765444 33455554444
No 178
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=80.29 E-value=1.6 Score=33.03 Aligned_cols=51 Identities=22% Similarity=0.301 Sum_probs=31.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-----CCCcEEEEcCCCCccCHHHHHHhCCCCcccEE
Q 027373 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFL 188 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El-----gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~L 188 (224)
-+..|+-+||++|+...-.|+++ ++.+-.++.+ . ..++.. +..+-..+|++
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~--~-~~~~l~-~~~~V~~~PT~ 76 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEES--S-IKPSLL-SRYGVVGFPTI 76 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECC--C-CCHHHH-HhcCCeecCEE
Confidence 47777888999999988777665 3333333332 1 233433 44556789977
No 179
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=80.28 E-value=11 Score=31.10 Aligned_cols=34 Identities=24% Similarity=0.569 Sum_probs=23.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc----CCCcEEEEcCC
Q 027373 134 RLQLFEFEACPFCRRVREAITEL----DLSVEVFPCPK 167 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El----gIpye~i~V~k 167 (224)
.+..|...|||+|++-.-.|.++ ++.+..+.++.
T Consensus 53 ~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~ 90 (153)
T TIGR02738 53 ALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDG 90 (153)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 36666777999999887777643 55555555543
No 180
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.26 E-value=6.9 Score=36.03 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=54.1
Q ss_pred CCCCCcEEEEEcCCC------hhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCC----CCcccEEEeCCCCeEee
Q 027373 129 SDSPTRLQLFEFEAC------PFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGG----KEQFPFLIDPNTGVSMY 198 (224)
Q Consensus 129 ~~pe~~L~LYs~e~c------PfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p----~~qVP~LvDpndG~~L~ 198 (224)
+-.++.+++|....- --|..||.+|+-.++-|++++|.++. ..+++++.+-+ ...+|.+.. +|.-|.
T Consensus 127 Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~-~fr~EL~~~lg~~~~~~~LPrVFV--~GryIG 203 (281)
T KOG2824|consen 127 PGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDS-EFREELQELLGEDEKAVSLPRVFV--KGRYIG 203 (281)
T ss_pred CCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccH-HHHHHHHHHHhcccccCccCeEEE--ccEEec
Confidence 345667888876422 27999999999999999999999875 44555655433 466787654 587777
Q ss_pred cHHHHHHH
Q 027373 199 ESGDIVNY 206 (224)
Q Consensus 199 ES~aIi~Y 206 (224)
.-..|++.
T Consensus 204 gaeeV~~L 211 (281)
T KOG2824|consen 204 GAEEVVRL 211 (281)
T ss_pred cHHHhhhh
Confidence 77777654
No 181
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=79.71 E-value=3.4 Score=29.94 Aligned_cols=60 Identities=10% Similarity=0.046 Sum_probs=34.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCC----CcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeE
Q 027373 134 RLQLFEFEACPFCRRVREAITELDL----SVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgI----pye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~ 196 (224)
-+..|+-+||+.|+...-.+.++-- .+....++-+ ...+.. +..+-..+|+++.-.+|..
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~l~-~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD--AQPQIA-QQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc--CCHHHH-HHcCCCCCCEEEEEeCCEE
Confidence 3666677899999999887766432 2333333322 223433 4455678998842225643
No 182
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=79.51 E-value=5.1 Score=31.37 Aligned_cols=47 Identities=30% Similarity=0.503 Sum_probs=27.0
Q ss_pred CChhHHHHHHHHHHc-------CCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeC
Q 027373 142 ACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (224)
Q Consensus 142 ~cPfCrrVR~~L~El-------gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDp 191 (224)
|||.|++-...|.++ ++.+..+..+.+.. ..+++++ -...+|++.|+
T Consensus 40 ~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~-~~~~~~~--~~~~~~~~~D~ 93 (146)
T PF08534_consen 40 WCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP-VREFLKK--YGINFPVLSDP 93 (146)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH-HHHHHHH--TTTTSEEEEET
T ss_pred CCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH-HHHHHHh--hCCCceEEech
Confidence 899999877555543 45555555544432 4455543 23456777763
No 183
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=78.75 E-value=2.3 Score=30.88 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=18.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc
Q 027373 134 RLQLFEFEACPFCRRVREAITEL 156 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El 156 (224)
-+.+|+.+||++|+.....+.++
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~ 43 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEEL 43 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHH
Confidence 46777889999999988777654
No 184
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=77.90 E-value=3.2 Score=30.59 Aligned_cols=56 Identities=21% Similarity=0.460 Sum_probs=34.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCC------CcEEEEcCCCCccCHHHHHHhCCCCcccEE-EeCCCCe
Q 027373 134 RLQLFEFEACPFCRRVREAITELDL------SVEVFPCPKGSIRHREMVRRLGGKEQFPFL-IDPNTGV 195 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgI------pye~i~V~k~~~~~~e~lk~l~p~~qVP~L-vDpndG~ 195 (224)
-+..|+.+||++|+...-.+.++.- .+-.++|+.. ++.. +...-..+|.+ +.+ +|.
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~----~~~~-~~~~v~~~Pt~~~~~-~g~ 83 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD----RMLC-RSQGVNSYPSLYVFP-SGM 83 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc----HHHH-HHcCCCccCEEEEEc-CCC
Confidence 4667788899999988877765422 2333455432 3333 34456789987 333 453
No 185
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=77.57 E-value=13 Score=34.26 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=46.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHH-------cC--CCcEEEEcCCCCccCHHHHHHhCCCCcccEE-EeCCCCe--E----e
Q 027373 134 RLQLFEFEACPFCRRVREAITE-------LD--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFL-IDPNTGV--S----M 197 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~E-------lg--Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~L-vDpndG~--~----L 197 (224)
-+.+|+.+||++|+.....+.+ .+ +.+-.++|+.. .+ +.+..+-..+|++ +..++.. . .
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----~~-l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~ 95 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE----KD-LAQKYGVSGYPTLKIFRNGEDSVSDYNGP 95 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc----HH-HHHhCCCccccEEEEEeCCccceeEecCC
Confidence 4777888999999987654443 23 44555566533 23 3334556779977 3332222 1 2
Q ss_pred ecHHHHHHHHHHHhCC
Q 027373 198 YESGDIVNYLFQQYGK 213 (224)
Q Consensus 198 ~ES~aIi~YL~e~y~~ 213 (224)
....+|.+|+.+..+.
T Consensus 96 ~~~~~l~~~i~~~~~~ 111 (462)
T TIGR01130 96 RDADGIVKYMKKQSGP 111 (462)
T ss_pred CCHHHHHHHHHHhcCC
Confidence 3578899999887653
No 186
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=77.06 E-value=3.4 Score=31.89 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=24.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-----CCCcEEEEcCC
Q 027373 134 RLQLFEFEACPFCRRVREAITEL-----DLSVEVFPCPK 167 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El-----gIpye~i~V~k 167 (224)
.|++|....||+|++....+..+ ++.+.+++++.
T Consensus 8 ~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p~ 46 (154)
T cd03023 8 TIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEFPI 46 (154)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeCCc
Confidence 57888888999999998877663 24555555543
No 187
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=76.69 E-value=2.7 Score=30.51 Aligned_cols=50 Identities=20% Similarity=0.402 Sum_probs=30.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-----C----CCcEEEEcCCCCccCHHHHHHhCCCCcccEE
Q 027373 134 RLQLFEFEACPFCRRVREAITEL-----D----LSVEVFPCPKGSIRHREMVRRLGGKEQFPFL 188 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El-----g----Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~L 188 (224)
-+..|+.+||+.|+.....+.++ + +.+-.++++.. .+.. +..+-..+|.+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~-~~~~v~~~Pt~ 77 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH----RELC-SEFQVRGYPTL 77 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC----hhhH-hhcCCCcCCEE
Confidence 57777888999999876666443 1 23333444432 2323 34456779977
No 188
>PLN02309 5'-adenylylsulfate reductase
Probab=76.20 E-value=18 Score=35.34 Aligned_cols=73 Identities=19% Similarity=0.407 Sum_probs=42.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcC-------CCcEEEEcCCCCccCHHHHHHhCCCCcccEEE-eCCCC--eEeec----
Q 027373 134 RLQLFEFEACPFCRRVREAITELD-------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI-DPNTG--VSMYE---- 199 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~Elg-------Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~Lv-DpndG--~~L~E---- 199 (224)
-+..|+-+||++|+...-.+.++. +.+-.++++.. ..+..++...-..+|+++ .+++. ...|.
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~---~~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R 444 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD---QKEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKR 444 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc---chHHHHhhCCCceeeEEEEEeCCCCCeeecCCCCc
Confidence 577888999999998777666542 33333444422 223333234567899883 22222 23453
Q ss_pred -HHHHHHHHHH
Q 027373 200 -SGDIVNYLFQ 209 (224)
Q Consensus 200 -S~aIi~YL~e 209 (224)
..+|+.|+.+
T Consensus 445 ~~~~L~~fv~~ 455 (457)
T PLN02309 445 DVDSLLSFVNS 455 (457)
T ss_pred CHHHHHHHHHH
Confidence 3678888764
No 189
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=76.01 E-value=14 Score=36.29 Aligned_cols=73 Identities=19% Similarity=0.368 Sum_probs=41.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc-------CCCcEEEEcCCCCccCHHHHHHhCCCCcccEE-EeCCCC--eEeec----
Q 027373 134 RLQLFEFEACPFCRRVREAITEL-------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFL-IDPNTG--VSMYE---- 199 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El-------gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~L-vDpndG--~~L~E---- 199 (224)
-|..|+-+||++|+...-.++++ ++.+-.++++.+. . +...+...-..+|++ +..++. ...|+
T Consensus 374 VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~--~-~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R 450 (463)
T TIGR00424 374 WLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ--K-EFAKQELQLGSFPTILFFPKHSSRPIKYPSEKR 450 (463)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc--c-HHHHHHcCCCccceEEEEECCCCCceeCCCCCC
Confidence 36677888999999887666554 2334445665432 1 223233455679977 333222 23454
Q ss_pred -HHHHHHHHHH
Q 027373 200 -SGDIVNYLFQ 209 (224)
Q Consensus 200 -S~aIi~YL~e 209 (224)
..+|+.|+..
T Consensus 451 ~~e~L~~Fv~~ 461 (463)
T TIGR00424 451 DVDSLMSFVNL 461 (463)
T ss_pred CHHHHHHHHHh
Confidence 3677777753
No 190
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=75.88 E-value=12 Score=29.97 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=30.6
Q ss_pred CCChhHHHHHHHHH----HcCCCcEEE--EcCC-CCccCH--HHHHH-hCCCCcccEEEeCCCCeEeecHHH
Q 027373 141 EACPFCRRVREAIT----ELDLSVEVF--PCPK-GSIRHR--EMVRR-LGGKEQFPFLIDPNTGVSMYESGD 202 (224)
Q Consensus 141 e~cPfCrrVR~~L~----ElgIpye~i--~V~k-~~~~~~--e~lk~-l~p~~qVP~LvDpndG~~L~ES~a 202 (224)
.|||.|+++.-.+. ...-...++ .|.. ..|+.+ .|.+. ...-..||+|+--+++..|.|..-
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhhh
Confidence 48999999885544 432234444 4432 123322 33221 133567999976656777877543
No 191
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=75.49 E-value=13 Score=30.96 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=19.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHc---CCCcEEEEcC
Q 027373 135 LQLFEFEACPFCRRVREAITEL---DLSVEVFPCP 166 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~El---gIpye~i~V~ 166 (224)
+..|...|||+|++-.-.|.++ |+.+--+.++
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~ 106 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYK 106 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 3334456999999866655544 5544444443
No 192
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=75.31 E-value=6.6 Score=27.95 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=16.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc
Q 027373 134 RLQLFEFEACPFCRRVREAITEL 156 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El 156 (224)
.+..|...+||.|++....|.++
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~~ 44 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEAL 44 (116)
T ss_pred EEEEeecccChhHHHHhHHHHHH
Confidence 46666677999999776666654
No 193
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=75.07 E-value=4.1 Score=29.47 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=31.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc----C--CCcEEEEcCCCCccCHHHHHHhCCCCcccEEE
Q 027373 134 RLQLFEFEACPFCRRVREAITEL----D--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI 189 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El----g--Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~Lv 189 (224)
.+..|+.+||+.|+.....+.++ . -.+....++-... ..+..+ ..+-..+|.++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~-~~~i~~~P~~~ 80 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA-NKDLAK-KYGVSGFPTLK 80 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc-chhhHH-hCCCCCcCEEE
Confidence 47777889999999776666543 2 1234433332210 234343 34567799773
No 194
>smart00594 UAS UAS domain.
Probab=74.87 E-value=21 Score=27.80 Aligned_cols=61 Identities=13% Similarity=0.256 Sum_probs=34.6
Q ss_pred cEEEEEcCCChhHHH-HHHHHHHcC------CCcEEEEcCCCCccCHHHHHHhCCCCcccEE--EeCCCCe
Q 027373 134 RLQLFEFEACPFCRR-VREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFL--IDPNTGV 195 (224)
Q Consensus 134 ~L~LYs~e~cPfCrr-VR~~L~Elg------Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~L--vDpndG~ 195 (224)
.+...+.++|++|+. .|.+|..-. =.|-.+.++-......+.. ......++|++ +++++|.
T Consensus 30 ~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~-~~~~~~~~P~~~~l~~~~g~ 99 (122)
T smart00594 30 LWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVS-QFYKLDSFPYVAIVDPRTGQ 99 (122)
T ss_pred EEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHH-HhcCcCCCCEEEEEecCCCc
Confidence 455557789999976 333333221 1355544444333344443 45556789977 6776653
No 195
>PHA03075 glutaredoxin-like protein; Provisional
Probab=74.78 E-value=4.3 Score=33.05 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=29.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHcCCCcEEEEc
Q 027373 133 TRLQLFEFEACPFCRRVREAITELDLSVEVFPC 165 (224)
Q Consensus 133 ~~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V 165 (224)
+-+.|++.+.|+-|+-+..+|.++.=+|+...|
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrV 35 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRV 35 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEE
Confidence 458999999999999999999999999998654
No 196
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=74.72 E-value=9.8 Score=29.35 Aligned_cols=56 Identities=27% Similarity=0.389 Sum_probs=29.0
Q ss_pred cEEEEE--cCCChhHHHHHHHHHHc-----CCCcEEEEcCCCCcc-CHHHHHHhCCCCcccEEEeC
Q 027373 134 RLQLFE--FEACPFCRRVREAITEL-----DLSVEVFPCPKGSIR-HREMVRRLGGKEQFPFLIDP 191 (224)
Q Consensus 134 ~L~LYs--~e~cPfCrrVR~~L~El-----gIpye~i~V~k~~~~-~~e~lk~l~p~~qVP~LvDp 191 (224)
++.|+. ..+||+|++-...|.++ +..+.++-|..+... ...+.+ .. ...+|++.|+
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~-~~-~~~~p~~~D~ 88 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDK-GK-FLPFPVYADP 88 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHH-hc-CCCCeEEECC
Confidence 444443 46999999855554443 122344444333222 223333 33 3468999986
No 197
>PF13728 TraF: F plasmid transfer operon protein
Probab=73.78 E-value=17 Score=31.61 Aligned_cols=60 Identities=25% Similarity=0.435 Sum_probs=38.4
Q ss_pred cEEEEEcCCChhHHHHHHHH----HHcCCCcEEEEcCCCC-------ccCHHHHHHhCCCCcccEE--EeCCCC
Q 027373 134 RLQLFEFEACPFCRRVREAI----TELDLSVEVFPCPKGS-------IRHREMVRRLGGKEQFPFL--IDPNTG 194 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L----~ElgIpye~i~V~k~~-------~~~~e~lk~l~p~~qVP~L--vDpndG 194 (224)
-|.+|+-..||||+.-.-.| .+.|+.+..+.++... .......++++ -..+|+| |+++++
T Consensus 123 gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~-v~~~Pal~Lv~~~~~ 195 (215)
T PF13728_consen 123 GLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLG-VKVTPALFLVNPNTK 195 (215)
T ss_pred EEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcC-CCcCCEEEEEECCCC
Confidence 47777778999997655444 4568888777776321 11234444444 4689977 777664
No 198
>PTZ00102 disulphide isomerase; Provisional
Probab=72.90 E-value=23 Score=33.22 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=44.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHHH-------cC--CCcEEEEcCCCCccCHHHHHHhCCCCcccEE-EeCCCCeE----ee
Q 027373 133 TRLQLFEFEACPFCRRVREAITE-------LD--LSVEVFPCPKGSIRHREMVRRLGGKEQFPFL-IDPNTGVS----MY 198 (224)
Q Consensus 133 ~~L~LYs~e~cPfCrrVR~~L~E-------lg--Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~L-vDpndG~~----L~ 198 (224)
.-+..|+.+||++|++..-.+.+ .+ +.+-.++|... .+.. +..+-..+|.+ +..+++.. -.
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~----~~l~-~~~~i~~~Pt~~~~~~g~~~~y~g~~ 125 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE----MELA-QEFGVRGYPTIKFFNKGNPVNYSGGR 125 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC----HHHH-HhcCCCcccEEEEEECCceEEecCCC
Confidence 35778888999999977543322 22 33444555432 3333 34455679977 33223322 23
Q ss_pred cHHHHHHHHHHHhCC
Q 027373 199 ESGDIVNYLFQQYGK 213 (224)
Q Consensus 199 ES~aIi~YL~e~y~~ 213 (224)
....|++||.+..+.
T Consensus 126 ~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 126 TADGIVSWIKKLTGP 140 (477)
T ss_pred CHHHHHHHHHHhhCC
Confidence 577899999887653
No 199
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=72.74 E-value=4.1 Score=29.61 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=29.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcC------CCcEEEEcCCCCccCHHHHHHhCCCCcccEE
Q 027373 134 RLQLFEFEACPFCRRVREAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFL 188 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~Elg------Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~L 188 (224)
-+.+++.+||+.|+.....+.++- +.+-.++++. ..+..+ ..+-..+|.+
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~----~~~~~~-~~~i~~~P~~ 76 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV----HQSLAQ-QYGVRGFPTI 76 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc----hHHHHH-HCCCCccCEE
Confidence 466667789999999876665531 2333344432 234333 3445679977
No 200
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=72.72 E-value=6.5 Score=29.23 Aligned_cols=54 Identities=24% Similarity=0.597 Sum_probs=27.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHcC----CCcEEEEcCCCC-ccCHHHHHHhCCCCcccEEE
Q 027373 135 LQLFEFEACPFCRRVREAITELD----LSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLI 189 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~Elg----Ipye~i~V~k~~-~~~~e~lk~l~p~~qVP~Lv 189 (224)
+..|.-.|||.|+...-.|.++. -.+.++-+..++ ....++++ ..+...+|++.
T Consensus 25 vl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~-~~~~~~~p~~~ 83 (114)
T cd02967 25 LLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLK-KHGLEAFPYVL 83 (114)
T ss_pred EEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHH-HhCCCCCcEEe
Confidence 44445569999998776665532 123333332222 22334443 33344478775
No 201
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=72.04 E-value=14 Score=28.82 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=40.3
Q ss_pred CCCCcEEE-EEcCCChhHHHHHHHHHHcCCC-----cEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeec
Q 027373 130 DSPTRLQL-FEFEACPFCRRVREAITELDLS-----VEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (224)
Q Consensus 130 ~pe~~L~L-Ys~e~cPfCrrVR~~L~ElgIp-----ye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~E 199 (224)
.+.+.+.+ |+-.||+.|+.+.=.++++--. |-.++++. .++... -..-..+|+++.-.+|..+.+
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~-~~~V~~~PTf~f~k~g~~~~~ 89 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAK-EFNVKAMPTFVFYKGGEEVDE 89 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHH-hcCceEeeEEEEEECCEEEEE
Confidence 34445444 5678999999999888887544 33456654 455443 445678998843335654433
No 202
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=71.78 E-value=5.6 Score=33.47 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=34.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCC---CcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEe
Q 027373 135 LQLFEFEACPFCRRVREAITELDL---SVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSM 197 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgI---pye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L 197 (224)
+..|+.+||+.|+.+.-.|.++-- .+.++.|+-+.. + +....+-..||+|+.=.+|..+
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~---~-l~~~f~v~~vPTlllyk~G~~v 148 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT---G-ASDEFDTDALPALLVYKGGELI 148 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch---h-hHHhCCCCCCCEEEEEECCEEE
Confidence 455667899999988777765522 223333332221 2 4445677889988432356543
No 203
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=71.09 E-value=7.5 Score=31.56 Aligned_cols=34 Identities=26% Similarity=0.543 Sum_probs=26.0
Q ss_pred EEEEEcCCChhHHHHHHHH----HHc-CCCcEEEEcCCC
Q 027373 135 LQLFEFEACPFCRRVREAI----TEL-DLSVEVFPCPKG 168 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L----~El-gIpye~i~V~k~ 168 (224)
|++|....||||......| .+. ++.++.+++...
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 7889888999997665544 445 888999888654
No 204
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=70.81 E-value=6.1 Score=32.74 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=34.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHcC-------CCcEEEEcCCCCccCHHHHHHhCC-----CCcccEEEeCCCCeEee
Q 027373 135 LQLFEFEACPFCRRVREAITELD-------LSVEVFPCPKGSIRHREMVRRLGG-----KEQFPFLIDPNTGVSMY 198 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~Elg-------Ipye~i~V~k~~~~~~e~lk~l~p-----~~qVP~LvDpndG~~L~ 198 (224)
+..|+.+|||.|+.....++++- +.+-.++++.. ++..++.+- -.++|+++.=.+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~----~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF----PNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC----HHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 67778889999998887776542 33333454432 233322221 13489874323676544
No 205
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=70.77 E-value=1.9 Score=34.71 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=29.1
Q ss_pred cEEEEEcCCChhHHHHHHHHH----Hc-CCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEe-CCCCeE
Q 027373 134 RLQLFEFEACPFCRRVREAIT----EL-DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLID-PNTGVS 196 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~----El-gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvD-pndG~~ 196 (224)
.+.++.-.|||.|+..--+|. +. +|++.++..+.+......++ .++...||.++. +++|..
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~l--t~g~~~IP~~I~~d~~~~~ 110 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYL--TNGGRSIPTFIFLDKDGKE 110 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTT--T-SS--SSEEEEE-TT--E
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHH--hCCCeecCEEEEEcCCCCE
Confidence 577788889999987655444 33 66666665433211122222 277899998843 234543
No 206
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=70.33 E-value=6 Score=31.43 Aligned_cols=67 Identities=13% Similarity=0.026 Sum_probs=41.3
Q ss_pred CCCCcEEEEEcCC--ChhHHHHHHHHHHcCCCc----EEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeec
Q 027373 130 DSPTRLQLFEFEA--CPFCRRVREAITELDLSV----EVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE 199 (224)
Q Consensus 130 ~pe~~L~LYs~e~--cPfCrrVR~~L~ElgIpy----e~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~E 199 (224)
.....+.+|+-+| ||.|+.+.-+|+++--.| .+..++.++ .++ +....+-..+|+|+.=.+|..+..
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~--~~~-la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD--EQA-LAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC--CHH-HHHHcCCCcCCEEEEEECCEEEEE
Confidence 3344577777775 999999999888764333 222333222 233 555677888998843336766544
No 207
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=70.06 E-value=6 Score=31.70 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=24.8
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHc------CCCcEEEEcCC
Q 027373 133 TRLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPK 167 (224)
Q Consensus 133 ~~L~LYs~e~cPfCrrVR~~L~El------gIpye~i~V~k 167 (224)
-.|..|....||+|++....+..+ ++.++.+++..
T Consensus 17 ~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~~ 57 (178)
T cd03019 17 PEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVVF 57 (178)
T ss_pred cEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCcc
Confidence 357777777899999988877643 45666666543
No 208
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=69.62 E-value=22 Score=26.96 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=42.5
Q ss_pred EEEEEcCCChhHHHHH-HHHHHcC------CCcEEEEcCCCCccCHHHHHHhCCCCcccEE--EeCCCCeEe------ec
Q 027373 135 LQLFEFEACPFCRRVR-EAITELD------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFL--IDPNTGVSM------YE 199 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR-~~L~Elg------Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~L--vDpndG~~L------~E 199 (224)
+..++.++|++|+... .+|.... =.|..+.++..+....++ ....+...+|++ +|+.+|..+ .+
T Consensus 21 lv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~-~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~ 99 (114)
T cd02958 21 LVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRF-LQSYKVDKYPHIAIIDPRTGEVLKVWSGNIT 99 (114)
T ss_pred EEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHH-HHHhCccCCCeEEEEeCccCcEeEEEcCCCC
Confidence 4444678999998853 3444322 235555555444334444 355667889977 666356433 34
Q ss_pred HHHHHHHHHH
Q 027373 200 SGDIVNYLFQ 209 (224)
Q Consensus 200 S~aIi~YL~e 209 (224)
..+++..|.+
T Consensus 100 ~~~f~~~L~~ 109 (114)
T cd02958 100 PEDLLSQLIE 109 (114)
T ss_pred HHHHHHHHHH
Confidence 5666666654
No 209
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=69.43 E-value=15 Score=30.12 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=15.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHc
Q 027373 135 LQLFEFEACPFCRRVREAITEL 156 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~El 156 (224)
+..|...|||.|++..-.|.++
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l 88 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNEL 88 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHH
Confidence 4445567999999876655544
No 210
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=68.94 E-value=12 Score=27.89 Aligned_cols=49 Identities=29% Similarity=0.556 Sum_probs=26.5
Q ss_pred CCChhHHHHHHHHHHcC-----CCcEEEEcCCCCc-cCHHHHHHhCCCCcccEEEeC
Q 027373 141 EACPFCRRVREAITELD-----LSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDP 191 (224)
Q Consensus 141 e~cPfCrrVR~~L~Elg-----Ipye~i~V~k~~~-~~~e~lk~l~p~~qVP~LvDp 191 (224)
.+||.|+.....|.++- ..+.++-|..+.. ...++.++.+ ..+|++.|+
T Consensus 36 ~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~--~~~~~~~D~ 90 (124)
T PF00578_consen 36 AWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG--LPFPVLSDP 90 (124)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT--CSSEEEEET
T ss_pred cCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhc--cccccccCc
Confidence 37999987776555531 2234443333322 2344444333 567888874
No 211
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=67.26 E-value=29 Score=26.39 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=15.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHc
Q 027373 135 LQLFEFEACPFCRRVREAITEL 156 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~El 156 (224)
+..|...|||.|+...-.|.++
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~l 50 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHHH
Confidence 4445567999999876666554
No 212
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=66.87 E-value=17 Score=27.33 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=16.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc
Q 027373 134 RLQLFEFEACPFCRRVREAITEL 156 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El 156 (224)
.+..|...+||+|+.....|..+
T Consensus 23 ~vl~F~~~~C~~C~~~~~~l~~~ 45 (123)
T cd03011 23 VLVYFWATWCPVCRFTSPTVNQL 45 (123)
T ss_pred EEEEEECCcChhhhhhChHHHHH
Confidence 35555677899999886655543
No 213
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=66.34 E-value=29 Score=31.40 Aligned_cols=62 Identities=23% Similarity=0.340 Sum_probs=39.3
Q ss_pred CcEEEEEcCCChhHHHHHHHH----HHcCCCcEEEEcCCCCc-c------CHHHHHHhCCCCcccEE--EeCCCCe
Q 027373 133 TRLQLFEFEACPFCRRVREAI----TELDLSVEVFPCPKGSI-R------HREMVRRLGGKEQFPFL--IDPNTGV 195 (224)
Q Consensus 133 ~~L~LYs~e~cPfCrrVR~~L----~ElgIpye~i~V~k~~~-~------~~e~lk~l~p~~qVP~L--vDpndG~ 195 (224)
-.+.+|+-..||+|++.--.| ++.||++..+.++.... . .....+++ +-..+|+| |+++++.
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l-~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHL-GVKYFPALYLVNPKSQK 226 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhc-CCccCceEEEEECCCCc
Confidence 357777778899998765555 56688888887764321 1 12222233 45679976 7777663
No 214
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=65.54 E-value=7.5 Score=30.54 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=25.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHH----Hc----CCCcEEEEcCCC
Q 027373 133 TRLQLFEFEACPFCRRVREAIT----EL----DLSVEVFPCPKG 168 (224)
Q Consensus 133 ~~L~LYs~e~cPfCrrVR~~L~----El----gIpye~i~V~k~ 168 (224)
..|++|....||+|++....+. +. .|.+..++++..
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred eEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence 3689999999999999876664 33 455666777554
No 215
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=65.15 E-value=17 Score=27.77 Aligned_cols=58 Identities=28% Similarity=0.429 Sum_probs=29.8
Q ss_pred CcEEEEEc--CCChhHHHHHHHHHHc-----CCCcEEEEcCCCCc-cCHHHHHHhCCCCcccEEEeC
Q 027373 133 TRLQLFEF--EACPFCRRVREAITEL-----DLSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDP 191 (224)
Q Consensus 133 ~~L~LYs~--e~cPfCrrVR~~L~El-----gIpye~i~V~k~~~-~~~e~lk~l~p~~qVP~LvDp 191 (224)
+++.|+.+ .+||.|......|.++ .-.+.++-|..++. ....+.+ ..+...+|+|.|+
T Consensus 23 k~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~-~~~~~~~~~l~D~ 88 (140)
T cd02971 23 KWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAE-KEGGLNFPLLSDP 88 (140)
T ss_pred CeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHh-cccCCCceEEECC
Confidence 34555544 5899998765555442 11234444433332 2234333 3334568888774
No 216
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.89 E-value=36 Score=31.91 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=44.7
Q ss_pred CChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHHHHH
Q 027373 142 ACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNYLFQ 209 (224)
Q Consensus 142 ~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~YL~e 209 (224)
.|+-|..|.+.+...+-+..++.... . ...+.+++|+|++. +|..+..-..|+.||..
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN-~--------~~s~sg~LP~l~~~-ng~~va~~~~iv~~L~k 73 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSN-P--------WRSPSGKLPYLITD-NGTKVAGPVKIVQFLKK 73 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecC-C--------CCCCCCCCCeEEec-CCceeccHHHHHHHHHH
Confidence 48999999999998885554443321 1 14678889999885 57899999999999986
No 217
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=63.98 E-value=10 Score=29.47 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=13.8
Q ss_pred EEEEEcCCChhHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAIT 154 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ 154 (224)
+..|...|||.|+.....|.
T Consensus 21 ll~F~atwC~~C~~~~p~l~ 40 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLV 40 (132)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 34445679999998766554
No 218
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=63.76 E-value=37 Score=26.97 Aligned_cols=72 Identities=8% Similarity=0.124 Sum_probs=40.0
Q ss_pred cEEEEE-cCCChh--HH--HHH--------HHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeE----
Q 027373 134 RLQLFE-FEACPF--CR--RVR--------EAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS---- 196 (224)
Q Consensus 134 ~L~LYs-~e~cPf--Cr--rVR--------~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~---- 196 (224)
++.++. -+||+. |+ ... ..|++.++.+-.++++.. ++ +.+..+-..+|+|+.=.+|..
T Consensus 29 ~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~----~~-La~~~~I~~iPTl~lfk~G~~v~~~ 103 (120)
T cd03065 29 LCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD----AK-VAKKLGLDEEDSIYVFKDDEVIEYD 103 (120)
T ss_pred eEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC----HH-HHHHcCCccccEEEEEECCEEEEee
Confidence 444444 445654 97 222 222234565666666543 33 445677888998832225642
Q ss_pred -eecHHHHHHHHHHH
Q 027373 197 -MYESGDIVNYLFQQ 210 (224)
Q Consensus 197 -L~ES~aIi~YL~e~ 210 (224)
.....+|++||.+-
T Consensus 104 G~~~~~~l~~~l~~~ 118 (120)
T cd03065 104 GEFAADTLVEFLLDL 118 (120)
T ss_pred CCCCHHHHHHHHHHH
Confidence 22456788888764
No 219
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.39 E-value=45 Score=28.77 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=47.6
Q ss_pred CCCCcEEEEEcCCChhHHH----------HHHHHHHc------CCCcEE-EEcCCCC---ccCHHHHHHhCCCCcccEEE
Q 027373 130 DSPTRLQLFEFEACPFCRR----------VREAITEL------DLSVEV-FPCPKGS---IRHREMVRRLGGKEQFPFLI 189 (224)
Q Consensus 130 ~pe~~L~LYs~e~cPfCrr----------VR~~L~El------gIpye~-i~V~k~~---~~~~e~lk~l~p~~qVP~Lv 189 (224)
.....+.+++-+.|+||.+ +|+.|.+. ++.+.. +....++ ....+.+.+...-+..|.++
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfv 120 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFV 120 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEE
Confidence 3444688889999999975 45555552 222111 1111121 12334566677778889773
Q ss_pred e-CCCCeEeec---------HHHHHHHHHHH
Q 027373 190 D-PNTGVSMYE---------SGDIVNYLFQQ 210 (224)
Q Consensus 190 D-pndG~~L~E---------S~aIi~YL~e~ 210 (224)
. +.+|..|.+ -.+|++|+++-
T Consensus 121 Ffdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 121 FFDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred EEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 2 236666665 67899998763
No 220
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=61.92 E-value=22 Score=27.33 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=30.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcC---------CCcEEEEcCCCCccCHHHHHHhCCCCcccEE
Q 027373 134 RLQLFEFEACPFCRRVREAITELD---------LSVEVFPCPKGSIRHREMVRRLGGKEQFPFL 188 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~Elg---------Ipye~i~V~k~~~~~~e~lk~l~p~~qVP~L 188 (224)
-+..|+.+||+.|+.....+.++. +.+-.++|+.+ ...+.. +..+-..+|.+
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~--~~~~~~-~~~~i~~~Pt~ 82 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE--ENVALC-RDFGVTGYPTL 82 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch--hhHHHH-HhCCCCCCCEE
Confidence 466677889999998877665542 22223344332 223333 34456779977
No 221
>PTZ00102 disulphide isomerase; Provisional
Probab=61.12 E-value=18 Score=33.94 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=41.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCC--------cEEEEcCCCCccCHHHHHHhCCCCcccEE-EeCCCCeE--e----e
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLS--------VEVFPCPKGSIRHREMVRRLGGKEQFPFL-IDPNTGVS--M----Y 198 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIp--------ye~i~V~k~~~~~~e~lk~l~p~~qVP~L-vDpndG~~--L----~ 198 (224)
-+..|+.+||++|+...-.+.++.-. +-.++++..+. .. ....-..+|.+ +-++++.. . .
T Consensus 378 vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~----~~-~~~~v~~~Pt~~~~~~~~~~~~~~~G~~ 452 (477)
T PTZ00102 378 VLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET----PL-EEFSWSAFPTILFVKAGERTPIPYEGER 452 (477)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc----ch-hcCCCcccCeEEEEECCCcceeEecCcC
Confidence 46666778999999888877765322 22234443321 11 12234568977 22223322 1 2
Q ss_pred cHHHHHHHHHHHhC
Q 027373 199 ESGDIVNYLFQQYG 212 (224)
Q Consensus 199 ES~aIi~YL~e~y~ 212 (224)
....|.++|.+...
T Consensus 453 ~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 453 TVEGFKEFVNKHAT 466 (477)
T ss_pred CHHHHHHHHHHcCC
Confidence 36678899988664
No 222
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.85 E-value=11 Score=31.80 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=40.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcE----EEEcCCCCccCHHHHHHhCCCCcccEE-EeCCCCeEe
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVE----VFPCPKGSIRHREMVRRLGGKEQFPFL-IDPNTGVSM 197 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye----~i~V~k~~~~~~e~lk~l~p~~qVP~L-vDpndG~~L 197 (224)
-|+-|+-+||..|+.+.-.|+++.-+|. ++-++-++ +.+ +...+.-..||++ +.. +|+.+
T Consensus 64 VlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~--~~e-la~~Y~I~avPtvlvfk-nGe~~ 128 (150)
T KOG0910|consen 64 VLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE--HPE-LAEDYEISAVPTVLVFK-NGEKV 128 (150)
T ss_pred EEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc--ccc-hHhhcceeeeeEEEEEE-CCEEe
Confidence 4888899999999999999999865532 33344332 233 3345677889977 333 46543
No 223
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=60.66 E-value=33 Score=34.04 Aligned_cols=78 Identities=21% Similarity=0.242 Sum_probs=48.6
Q ss_pred cEEEEEcCCChhHHHH-------HHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEE-EeCCCCe------Eeec
Q 027373 134 RLQLFEFEACPFCRRV-------REAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFL-IDPNTGV------SMYE 199 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrV-------R~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~L-vDpndG~------~L~E 199 (224)
-|+.|+-+||.+|++. -..|.+.+=+..+.-|+-... .+ +.....-..+|+| +.. +|. ...+
T Consensus 45 vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~--~~-~~~~y~v~gyPTlkiFr-nG~~~~~Y~G~r~ 120 (493)
T KOG0190|consen 45 VLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE--SD-LASKYEVRGYPTLKIFR-NGRSAQDYNGPRE 120 (493)
T ss_pred EEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh--hh-hHhhhcCCCCCeEEEEe-cCCcceeccCccc
Confidence 3667788899999764 345555544555544432221 23 3334556678988 443 343 2667
Q ss_pred HHHHHHHHHHHhCCCC
Q 027373 200 SGDIVNYLFQQYGKGR 215 (224)
Q Consensus 200 S~aIi~YL~e~y~~~~ 215 (224)
...|+.||.++.|...
T Consensus 121 adgIv~wl~kq~gPa~ 136 (493)
T KOG0190|consen 121 ADGIVKWLKKQSGPAS 136 (493)
T ss_pred HHHHHHHHHhccCCCc
Confidence 9999999999887544
No 224
>PTZ00056 glutathione peroxidase; Provisional
Probab=59.88 E-value=18 Score=30.91 Aligned_cols=72 Identities=13% Similarity=0.262 Sum_probs=35.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHc-------CCCcEEEEcCC------CC-ccCHHHHHHhCCCCcccEEEeCCCCeEeecH
Q 027373 135 LQLFEFEACPFCRRVREAITEL-------DLSVEVFPCPK------GS-IRHREMVRRLGGKEQFPFLIDPNTGVSMYES 200 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~El-------gIpye~i~V~k------~~-~~~~e~lk~l~p~~qVP~LvDpndG~~L~ES 200 (224)
+..|-..|||+|++-.-.|.++ |+.+--++++. ++ ....+++++ .+ ..+|++.|. +..-.+.
T Consensus 43 lv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~-~~-~~fpvl~d~--~v~g~~~ 118 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDK-NK-IKYNFFEPI--EVNGENT 118 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHH-cC-CCceeeeee--eccCCcc
Confidence 4444456999998744444433 45444444431 11 123455543 32 357887541 1111234
Q ss_pred HHHHHHHHHH
Q 027373 201 GDIVNYLFQQ 210 (224)
Q Consensus 201 ~aIi~YL~e~ 210 (224)
..+.+||.+.
T Consensus 119 ~~l~~~l~~~ 128 (199)
T PTZ00056 119 HELFKFLKAN 128 (199)
T ss_pred CHHHHHHHHh
Confidence 5566666543
No 225
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=58.95 E-value=22 Score=29.90 Aligned_cols=68 Identities=13% Similarity=0.207 Sum_probs=46.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCccc-------EEEeCCCCeE---eecHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFP-------FLIDPNTGVS---MYESGDI 203 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP-------~LvDpndG~~---L~ES~aI 203 (224)
.+++|..+.|.+|..=-..|+.+|+.+..+..+. .+.+|+. --|| +.|. +|.. -.=-.||
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d-----~~alK~~---~gIp~e~~SCHT~VI--~Gy~vEGHVPa~aI 96 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDD-----FLALKRR---LGIPYEMQSCHTAVI--NGYYVEGHVPAEAI 96 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCc-----HHHHHHh---cCCChhhccccEEEE--cCEEEeccCCHHHH
Confidence 6999999999999999999999998887766432 2223332 1244 3333 3532 2237899
Q ss_pred HHHHHHHh
Q 027373 204 VNYLFQQY 211 (224)
Q Consensus 204 i~YL~e~y 211 (224)
.+.|+++.
T Consensus 97 ~~ll~~~p 104 (149)
T COG3019 97 ARLLAEKP 104 (149)
T ss_pred HHHHhCCC
Confidence 99999987
No 226
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.59 E-value=20 Score=29.44 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=39.4
Q ss_pred CCChhHHHHHH----HHHHcCCCcEEEEcCCC---CccC--HHHHHHhCCCCcccEEEeCC-CCeEeecHHHHHHHHHHH
Q 027373 141 EACPFCRRVRE----AITELDLSVEVFPCPKG---SIRH--REMVRRLGGKEQFPFLIDPN-TGVSMYESGDIVNYLFQQ 210 (224)
Q Consensus 141 e~cPfCrrVR~----~L~ElgIpye~i~V~k~---~~~~--~e~lk~l~p~~qVP~LvDpn-dG~~L~ES~aIi~YL~e~ 210 (224)
.|||.|.++-. +|++...+..++.|.-| .|+. .+|.++-+-..-||+|+.-. .+..+-+.......|.+-
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve~ 122 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVEM 122 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHHH
Confidence 48999998754 55545555555544333 2322 13322211125799995432 445677777777777654
No 227
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=58.41 E-value=14 Score=31.24 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=24.3
Q ss_pred cEEEEEcCCChhHHHHHHHH----HHcCCCcEEEEcC
Q 027373 134 RLQLFEFEACPFCRRVREAI----TELDLSVEVFPCP 166 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L----~ElgIpye~i~V~ 166 (224)
.|.+|+...||||.....-| .+.+++++++++.
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~ 38 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVF 38 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 48899999999997765544 4567777777653
No 228
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=57.90 E-value=12 Score=30.72 Aligned_cols=31 Identities=26% Similarity=0.630 Sum_probs=21.7
Q ss_pred EEEEEcCCChhHHHHHHHH----HHc----CCCcEEEEc
Q 027373 135 LQLFEFEACPFCRRVREAI----TEL----DLSVEVFPC 165 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L----~El----gIpye~i~V 165 (224)
|++|....||||......| ++. +++++++++
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~ 39 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPF 39 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeee
Confidence 4688888999998665555 455 566666665
No 229
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=57.38 E-value=28 Score=31.41 Aligned_cols=62 Identities=21% Similarity=0.196 Sum_probs=38.0
Q ss_pred CcEEEEEcCCChhHHHHHH----HHHHcCCCcEEEEcCCCC-cc------CHHHHHHhCCCCcccEE--EeCCCCe
Q 027373 133 TRLQLFEFEACPFCRRVRE----AITELDLSVEVFPCPKGS-IR------HREMVRRLGGKEQFPFL--IDPNTGV 195 (224)
Q Consensus 133 ~~L~LYs~e~cPfCrrVR~----~L~ElgIpye~i~V~k~~-~~------~~e~lk~l~p~~qVP~L--vDpndG~ 195 (224)
..|.+|+-..||||++--- +-++.||++..+.++... .. ...... .-+-..+|+| |+++++.
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~-~l~v~~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQ-RLGVKYFPALMLVDPKSGS 219 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHH-hcCCcccceEEEEECCCCc
Confidence 4577777788999987544 445568887777775421 11 112222 2334678976 7777663
No 230
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=55.84 E-value=16 Score=29.58 Aligned_cols=31 Identities=13% Similarity=0.217 Sum_probs=22.6
Q ss_pred EEEEEcCCChhHHHHHHHHH----HcCCCcEEEEc
Q 027373 135 LQLFEFEACPFCRRVREAIT----ELDLSVEVFPC 165 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~----ElgIpye~i~V 165 (224)
|.+|....||||......|. +.+++++.+++
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 46888889999987655554 45777777665
No 231
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=55.63 E-value=16 Score=29.29 Aligned_cols=51 Identities=6% Similarity=0.119 Sum_probs=31.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcE----EEEcCCCCccCHHHHHHhCCCCcccEE
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVE----VFPCPKGSIRHREMVRRLGGKEQFPFL 188 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye----~i~V~k~~~~~~e~lk~l~p~~qVP~L 188 (224)
+.=|+..|||.|+..-..|.++--.|. ...|+-+ +.++ +.+...-...|+.
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVD--ev~d-va~~y~I~amPtf 72 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVD--KVPV-YTQYFDISYIPST 72 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecc--ccHH-HHHhcCceeCcEE
Confidence 344567899999999999988754322 3333333 2344 3445555667865
No 232
>PTZ00062 glutaredoxin; Provisional
Probab=55.58 E-value=57 Score=28.42 Aligned_cols=68 Identities=7% Similarity=0.062 Sum_probs=42.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCC---cEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeE-----eecHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITELDLS---VEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS-----MYESGDIVNY 206 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIp---ye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~-----L~ES~aIi~Y 206 (224)
+..|.-+|||.|+.+..+|.++--+ +.++.|+.+ ..-..||+++-=.+|.. =.+-..+..+
T Consensus 21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----------~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~ 89 (204)
T PTZ00062 21 VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----------DANNEYGVFEFYQNSQLINSLEGCNTSTLVSF 89 (204)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----------cCcccceEEEEEECCEEEeeeeCCCHHHHHHH
Confidence 4444578999999999999887543 444445432 34456997643235643 2346777888
Q ss_pred HHHHhCC
Q 027373 207 LFQQYGK 213 (224)
Q Consensus 207 L~e~y~~ 213 (224)
|.+.++.
T Consensus 90 ~~~~~~~ 96 (204)
T PTZ00062 90 IRGWAQK 96 (204)
T ss_pred HHHHcCC
Confidence 8776653
No 233
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=54.28 E-value=34 Score=26.54 Aligned_cols=56 Identities=23% Similarity=0.317 Sum_probs=27.4
Q ss_pred CcEEEEE--cCCChhHHHHHHHHHHc-----CCCcEEEEcCCCCc-cCHHHHHHhCCCCcccEEEe
Q 027373 133 TRLQLFE--FEACPFCRRVREAITEL-----DLSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLID 190 (224)
Q Consensus 133 ~~L~LYs--~e~cPfCrrVR~~L~El-----gIpye~i~V~k~~~-~~~e~lk~l~p~~qVP~LvD 190 (224)
+.+.|+. ..|||.|.+....|.++ +..+.++-|..+.. ...++.++ .+ ..+|++.|
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~-~~-~~~~~~~D 92 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEE-NG-LTFPLLSD 92 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHh-cC-CCceEecC
Confidence 3444444 46899998665444432 12233444433321 23344433 32 35677765
No 234
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=54.19 E-value=37 Score=26.00 Aligned_cols=55 Identities=24% Similarity=0.416 Sum_probs=28.1
Q ss_pred CcEEEEEc--CCChhHHHHHHHH-------HHcCCCcEEEEcCCCC-ccCHHHHHHhCCCCcccEEEeC
Q 027373 133 TRLQLFEF--EACPFCRRVREAI-------TELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDP 191 (224)
Q Consensus 133 ~~L~LYs~--e~cPfCrrVR~~L-------~ElgIpye~i~V~k~~-~~~~e~lk~l~p~~qVP~LvDp 191 (224)
+.+.|+.+ .+||.|.+....| .+.|+ +++-|..+. ....+++++ .+ -.+|++.|+
T Consensus 24 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~--~vv~is~d~~~~~~~~~~~-~~-~~~~~l~D~ 88 (140)
T cd03017 24 KPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGA--VVIGVSPDSVESHAKFAEK-YG-LPFPLLSDP 88 (140)
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHH-hC-CCceEEECC
Confidence 34445444 5899998644433 33354 444443332 223444443 33 357888774
No 235
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=53.28 E-value=28 Score=27.57 Aligned_cols=54 Identities=13% Similarity=0.246 Sum_probs=26.5
Q ss_pred cEEEEEc--CCChhHHHH-------HHHHHHcCCCcEEEEcCCCC-ccCHHHHHHhCCCCcccEEEeC
Q 027373 134 RLQLFEF--EACPFCRRV-------REAITELDLSVEVFPCPKGS-IRHREMVRRLGGKEQFPFLIDP 191 (224)
Q Consensus 134 ~L~LYs~--e~cPfCrrV-------R~~L~ElgIpye~i~V~k~~-~~~~e~lk~l~p~~qVP~LvDp 191 (224)
.+.|+-+ .+||.|..- ...+.+.|+.+ +-|..+. ....+++++. + ..+|+|.|+
T Consensus 32 ~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~v--i~Is~d~~~~~~~~~~~~-~-~~~~~l~D~ 95 (154)
T PRK09437 32 RVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVV--LGISTDKPEKLSRFAEKE-L-LNFTLLSDE 95 (154)
T ss_pred CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEE--EEEcCCCHHHHHHHHHHh-C-CCCeEEECC
Confidence 4555544 479999653 33334445544 4443332 2233444433 2 357777663
No 236
>PTZ00256 glutathione peroxidase; Provisional
Probab=52.57 E-value=33 Score=28.51 Aligned_cols=72 Identities=19% Similarity=0.311 Sum_probs=36.2
Q ss_pred EEEEcCCChhHHHHHHHHHH-------cCCCcEEEEcCC-C--C----ccCHHHHHHhCCCCcccEEEe--CCCCeEeec
Q 027373 136 QLFEFEACPFCRRVREAITE-------LDLSVEVFPCPK-G--S----IRHREMVRRLGGKEQFPFLID--PNTGVSMYE 199 (224)
Q Consensus 136 ~LYs~e~cPfCrrVR~~L~E-------lgIpye~i~V~k-~--~----~~~~e~lk~l~p~~qVP~LvD--pndG~~L~E 199 (224)
.++-..|||+|++-.-.|.+ +|+.+--++++. . + ....+++++..+ ..+|++.| . +|..
T Consensus 46 v~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~-~~fpv~~d~d~-~g~~--- 120 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFN-VDFPLFQKIEV-NGEN--- 120 (183)
T ss_pred EEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcC-CCCCCceEEec-CCCC---
Confidence 34557799999974444432 344444444431 1 1 112234332222 35888843 3 2322
Q ss_pred HHHHHHHHHHHhC
Q 027373 200 SGDIVNYLFQQYG 212 (224)
Q Consensus 200 S~aIi~YL~e~y~ 212 (224)
...+..||.++.+
T Consensus 121 ~~~~~~~l~~~~~ 133 (183)
T PTZ00256 121 THEIYKYLRRNSE 133 (183)
T ss_pred CCHHHHHHHhhCC
Confidence 3456677777653
No 237
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=50.36 E-value=16 Score=29.76 Aligned_cols=23 Identities=17% Similarity=0.530 Sum_probs=16.8
Q ss_pred CCCCcEEEEEcCCChhHHHHHHH
Q 027373 130 DSPTRLQLFEFEACPFCRRVREA 152 (224)
Q Consensus 130 ~pe~~L~LYs~e~cPfCrrVR~~ 152 (224)
.+..-|..++.+|||+|++....
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~ 44 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKA 44 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHH
Confidence 34334666788899999988764
No 238
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=49.60 E-value=27 Score=28.53 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=13.6
Q ss_pred CcEEEEEc--CCChhHHHHHHHHH
Q 027373 133 TRLQLFEF--EACPFCRRVREAIT 154 (224)
Q Consensus 133 ~~L~LYs~--e~cPfCrrVR~~L~ 154 (224)
+.+.|+.+ .|||.|......|.
T Consensus 30 k~vvl~F~~~~~c~~C~~~l~~l~ 53 (173)
T cd03015 30 KWVVLFFYPLDFTFVCPTEIIAFS 53 (173)
T ss_pred CEEEEEEECCCCCCcCHHHHHHHH
Confidence 34555554 68999987544443
No 239
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=48.58 E-value=16 Score=25.08 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=15.3
Q ss_pred cCCChhHHHHHHHHHHcC
Q 027373 140 FEACPFCRRVREAITELD 157 (224)
Q Consensus 140 ~e~cPfCrrVR~~L~Elg 157 (224)
.++||+|+.....|.+..
T Consensus 41 ~~~C~~C~~~~~~l~~~~ 58 (127)
T COG0526 41 APWCPPCRAEAPLLEELA 58 (127)
T ss_pred cCcCHHHHhhchhHHHHH
Confidence 789999999988887754
No 240
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=48.57 E-value=48 Score=28.36 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=33.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCC---cEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeE
Q 027373 135 LQLFEFEACPFCRRVREAITELDLS---VEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIp---ye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~ 196 (224)
+..|+.+||+.|+.+...|.++--. ..++.|+-. ... ...+-..+|+|+.=.+|..
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad-----~~~-~~~~i~~lPTlliyk~G~~ 164 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST-----QCI-PNYPDKNLPTILVYRNGDI 164 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH-----HhH-hhCCCCCCCEEEEEECCEE
Confidence 5556778999999998888776322 223333221 112 3456778998843235643
No 241
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=48.35 E-value=50 Score=29.38 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=18.5
Q ss_pred EEEEEcCCChhHHHHHHHH-------HHcCCCcEEEEcC
Q 027373 135 LQLFEFEACPFCRRVREAI-------TELDLSVEVFPCP 166 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L-------~ElgIpye~i~V~ 166 (224)
+..+...|||.|+.-.-.| ..+|+.+.-++++
T Consensus 103 vl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 103 LIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred EEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 4444567999997643333 3345555555653
No 242
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=46.74 E-value=78 Score=26.12 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=18.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHcC
Q 027373 135 LQLFEFEACPFCRRVREAITELD 157 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~Elg 157 (224)
+.-|+.+||+.|+..-..|+++-
T Consensus 27 VvdF~A~WCgpCk~m~p~l~~la 49 (142)
T PLN00410 27 VIRFGHDWDETCMQMDEVLASVA 49 (142)
T ss_pred EEEEECCCChhHHHHHHHHHHHH
Confidence 45566789999999998888764
No 243
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=45.49 E-value=29 Score=25.17 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=32.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCCC----cEEEEcCCCCccCHHHHHHhCCCC--cccEEE
Q 027373 134 RLQLFEFEACPFCRRVREAITELDLS----VEVFPCPKGSIRHREMVRRLGGKE--QFPFLI 189 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgIp----ye~i~V~k~~~~~~e~lk~l~p~~--qVP~Lv 189 (224)
.+.+|..++|+.|...+..+.+..-. +....++.+. .++... ..+-. .+|+++
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~--~~~~~~-~~~i~~~~~P~~~ 73 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD--FGRHLE-YFGLKEEDLPVIA 73 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh--hHHHHH-HcCCChhhCCEEE
Confidence 46667778999999999988875322 3333443332 234443 33444 899883
No 244
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=45.18 E-value=41 Score=28.62 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=11.1
Q ss_pred cEEEEEc--CCChhHHHH
Q 027373 134 RLQLFEF--EACPFCRRV 149 (224)
Q Consensus 134 ~L~LYs~--e~cPfCrrV 149 (224)
.+.||.+ .+||.|..-
T Consensus 33 ~vvL~F~P~~~~p~C~~e 50 (187)
T PRK10382 33 WSVFFFYPADFTFVCPTE 50 (187)
T ss_pred eEEEEEECCCCCCcCHHH
Confidence 4556655 689999873
No 245
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=44.95 E-value=22 Score=25.43 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=16.1
Q ss_pred cEEEEEcCCChhHHHHHHHH
Q 027373 134 RLQLFEFEACPFCRRVREAI 153 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L 153 (224)
-+..++-+||++|++....+
T Consensus 20 vlv~f~a~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 20 VLVDFGADWCPPCKKLEREV 39 (82)
T ss_dssp EEEEEETTTTHHHHHHHHHT
T ss_pred EEEEEECCCCHhHHHHHHHH
Confidence 47777889999999887654
No 246
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=44.48 E-value=38 Score=27.49 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=21.6
Q ss_pred cEEEEEcCCChhHHHHHHHHH----Hc--CCCcEEEE
Q 027373 134 RLQLFEFEACPFCRRVREAIT----EL--DLSVEVFP 164 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~----El--gIpye~i~ 164 (224)
.|.+|....||||......|. +. +++++++.
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~ 38 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHL 38 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEe
Confidence 478999999999976655554 43 56666554
No 247
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=44.25 E-value=59 Score=29.36 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=40.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeE
Q 027373 132 PTRLQLFEFEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS 196 (224)
Q Consensus 132 e~~L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~ 196 (224)
+.++++|.+..|.-|...-..|+++|+-=.+..++... +.|..-.++--.||.+.. ||..
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~---p~f~~~~~~V~SvP~Vf~--DGel 69 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAEL---PPFLAFEKGVISVPSVFI--DGEL 69 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCC---ChHHHhhcceeecceEEE--cCeE
Confidence 35799999999999999999999999853333332221 223322355677997754 4654
No 248
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=43.41 E-value=18 Score=32.68 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=18.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc
Q 027373 134 RLQLFEFEACPFCRRVREAITEL 156 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El 156 (224)
.+.+-++++||||..-||.|-..
T Consensus 61 ~v~~igw~gCP~~A~~sW~L~~A 83 (249)
T PF06053_consen 61 EVIFIGWEGCPYCAAESWALYIA 83 (249)
T ss_pred EEEEEecccCccchhhHHHHHHH
Confidence 35555899999999999987653
No 249
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=42.61 E-value=61 Score=26.50 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=28.8
Q ss_pred cEEEEEcC--CChhHHHHHHHHHHc--C-CCcEEEEcCCCCc-cCHHHHHHhCCCCcccEEEeC
Q 027373 134 RLQLFEFE--ACPFCRRVREAITEL--D-LSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDP 191 (224)
Q Consensus 134 ~L~LYs~e--~cPfCrrVR~~L~El--g-Ipye~i~V~k~~~-~~~e~lk~l~p~~qVP~LvDp 191 (224)
.+.|+.++ +||.|.+-.-.|.++ . -.++++-|..+.. ...+|.++ .+...+|+|.|+
T Consensus 46 ~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~-~~~~~~~~lsD~ 108 (167)
T PRK00522 46 RKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGA-EGLENVITLSDF 108 (167)
T ss_pred EEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHh-CCCCCceEeecC
Confidence 44444443 499998755444442 1 1345555544432 23455543 333346777763
No 250
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=41.97 E-value=77 Score=25.56 Aligned_cols=22 Identities=18% Similarity=0.702 Sum_probs=14.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHc
Q 027373 135 LQLFEFEACPFCRRVREAITEL 156 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~El 156 (224)
|..|...+||.|.+....|.++
T Consensus 29 ll~f~~t~Cp~c~~~~~~l~~l 50 (171)
T cd02969 29 VVMFICNHCPYVKAIEDRLNRL 50 (171)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 4444567999998755555544
No 251
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=41.49 E-value=56 Score=30.41 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=45.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHHc------CCCcEEEEcCCCCccCHHHHHHhCCCCcccEEE-eCCCC------eEeecH
Q 027373 134 RLQLFEFEACPFCRRVREAITEL------DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLI-DPNTG------VSMYES 200 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~El------gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~Lv-DpndG------~~L~ES 200 (224)
.+..++.+||++|++..--...+ +..+++..++... ...+.........|.++ .+.++ ..+.++
T Consensus 165 ~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~---~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~ 241 (383)
T KOG0191|consen 165 WLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV---HKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDS 241 (383)
T ss_pred eEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccch---HHHHhhhhcccCCceEEEecCCCcccccccccccH
Confidence 47777889999999883333332 2333333333221 12233344566677662 22122 247789
Q ss_pred HHHHHHHHHHhCCC
Q 027373 201 GDIVNYLFQQYGKG 214 (224)
Q Consensus 201 ~aIi~YL~e~y~~~ 214 (224)
..|+.|+.+.....
T Consensus 242 ~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 242 DSIVSFVEKKERRN 255 (383)
T ss_pred HHHHHHHHhhcCCC
Confidence 99999999888764
No 252
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=41.05 E-value=42 Score=28.48 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=13.0
Q ss_pred CcEEEEEc--CCChhHHHHHHHHH
Q 027373 133 TRLQLFEF--EACPFCRRVREAIT 154 (224)
Q Consensus 133 ~~L~LYs~--e~cPfCrrVR~~L~ 154 (224)
+.+.|+.+ .+||.|..-...|.
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~ 49 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFA 49 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHH
Confidence 34556544 57999987544333
No 253
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=39.92 E-value=64 Score=27.73 Aligned_cols=44 Identities=7% Similarity=0.109 Sum_probs=26.5
Q ss_pred cEEEEEc--CCChhHHHHHH---HHHHcCCCc------EEEEcCCCCccCHHHHH
Q 027373 134 RLQLFEF--EACPFCRRVRE---AITELDLSV------EVFPCPKGSIRHREMVR 177 (224)
Q Consensus 134 ~L~LYs~--e~cPfCrrVR~---~L~ElgIpy------e~i~V~k~~~~~~e~lk 177 (224)
++.|-.+ .||+.|+.-.- .|.+.|+++ ..++.+...+....|++
T Consensus 60 KV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk 114 (184)
T TIGR01626 60 KVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVK 114 (184)
T ss_pred CEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHH
Confidence 4444444 49999987554 455568888 66676654344445543
No 254
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=39.41 E-value=60 Score=24.52 Aligned_cols=64 Identities=9% Similarity=0.203 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHcCCCcEEEEcCCCC--------------cc---CHHHHHHhCCCCcccEEEeCCCCeEeecHHHHHHH
Q 027373 144 PFCRRVREAITELDLSVEVFPCPKGS--------------IR---HREMVRRLGGKEQFPFLIDPNTGVSMYESGDIVNY 206 (224)
Q Consensus 144 PfCrrVR~~L~ElgIpye~i~V~k~~--------------~~---~~e~lk~l~p~~qVP~LvDpndG~~L~ES~aIi~Y 206 (224)
-.+.+++..+++.|++++...++..+ +. ..+.+++......+|+.+.+.......+..+|+..
T Consensus 14 ~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~~~Y~~~dg~~il~~ 93 (96)
T cd05564 14 ILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDMMDYGMMNGEKVLKQ 93 (96)
T ss_pred HHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcChHhcccCCHHHHHHH
Confidence 46778888888888888776543210 01 11334333445678988554355667777777766
Q ss_pred H
Q 027373 207 L 207 (224)
Q Consensus 207 L 207 (224)
+
T Consensus 94 ~ 94 (96)
T cd05564 94 A 94 (96)
T ss_pred H
Confidence 4
No 255
>PLN02412 probable glutathione peroxidase
Probab=39.03 E-value=64 Score=26.45 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=12.9
Q ss_pred cEEE-EEcCCChhHHHHHHHHH
Q 027373 134 RLQL-FEFEACPFCRRVREAIT 154 (224)
Q Consensus 134 ~L~L-Ys~e~cPfCrrVR~~L~ 154 (224)
.+.| |...|||+|++-...|.
T Consensus 31 ~vlv~f~a~~C~~c~~e~~~l~ 52 (167)
T PLN02412 31 VLLIVNVASKCGLTDSNYKELN 52 (167)
T ss_pred EEEEEEeCCCCCChHHHHHHHH
Confidence 3444 45689999997433333
No 256
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=39.01 E-value=52 Score=26.20 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=12.7
Q ss_pred EEEEEcCCChhHHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITE 155 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~E 155 (224)
+..|...||| |++-.-.|.+
T Consensus 26 vl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 26 LIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EEEEEcCCCC-chHHHHHHHH
Confidence 3344567999 9875555554
No 257
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=37.70 E-value=59 Score=27.16 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=12.7
Q ss_pred CcEEEEEc--CCChhHHHHH
Q 027373 133 TRLQLFEF--EACPFCRRVR 150 (224)
Q Consensus 133 ~~L~LYs~--e~cPfCrrVR 150 (224)
+.+.||.+ .|||.|.+-.
T Consensus 32 k~vvl~F~p~~~cp~C~~el 51 (187)
T TIGR03137 32 KWSVFFFYPADFTFVCPTEL 51 (187)
T ss_pred CEEEEEEECCCcCCcCHHHH
Confidence 35666665 6899998743
No 258
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=36.59 E-value=80 Score=24.42 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=28.6
Q ss_pred cEEEEEcC--CChhHHHHHHHHHHcC---CCcEEEEcCCCCc-cCHHHHHHhCCCCcccEEEeC
Q 027373 134 RLQLFEFE--ACPFCRRVREAITELD---LSVEVFPCPKGSI-RHREMVRRLGGKEQFPFLIDP 191 (224)
Q Consensus 134 ~L~LYs~e--~cPfCrrVR~~L~Elg---Ipye~i~V~k~~~-~~~e~lk~l~p~~qVP~LvDp 191 (224)
.+.|+.+. +||.|++-...|.++- -.+.++-|..+.. ...++.++ .+...+|++.|+
T Consensus 28 ~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~-~~~~~~~~l~D~ 90 (143)
T cd03014 28 VKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGA-EGVDNVTTLSDF 90 (143)
T ss_pred eEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHh-cCCCCceEeecC
Confidence 45555554 4899988766655431 1234444433322 22344432 333357777664
No 259
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=36.12 E-value=71 Score=31.30 Aligned_cols=75 Identities=19% Similarity=0.372 Sum_probs=56.3
Q ss_pred CCChhHHHHHHHHHHc--CCC-cEEEEcCCCCccCHHHHHHhC---C--CCcccEE----EeC-CCCeEeecHHHHHHHH
Q 027373 141 EACPFCRRVREAITEL--DLS-VEVFPCPKGSIRHREMVRRLG---G--KEQFPFL----IDP-NTGVSMYESGDIVNYL 207 (224)
Q Consensus 141 e~cPfCrrVR~~L~El--gIp-ye~i~V~k~~~~~~e~lk~l~---p--~~qVP~L----vDp-ndG~~L~ES~aIi~YL 207 (224)
..|||=.|+-++.+++ ++| |.++-|.+......+|++++. + ...-|++ +|. ..|.-|...++-++|.
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~ 81 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYA 81 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHH
Confidence 3699999999999987 454 888888776555567776543 2 4678988 443 2347799999999999
Q ss_pred HHHhCCCC
Q 027373 208 FQQYGKGR 215 (224)
Q Consensus 208 ~e~y~~~~ 215 (224)
...||-..
T Consensus 82 ~~yyg~~s 89 (452)
T cd05295 82 ESYYGITS 89 (452)
T ss_pred HHHhCccc
Confidence 99998644
No 260
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=35.92 E-value=1.7e+02 Score=26.83 Aligned_cols=83 Identities=17% Similarity=0.248 Sum_probs=51.2
Q ss_pred CcEEEEEcCCChhHHHHHHHHHHcCC-CcEEEEcCCCCc-----------------cCHHHHHHhCCCCcccEEEeCCCC
Q 027373 133 TRLQLFEFEACPFCRRVREAITELDL-SVEVFPCPKGSI-----------------RHREMVRRLGGKEQFPFLIDPNTG 194 (224)
Q Consensus 133 ~~L~LYs~e~cPfCrrVR~~L~ElgI-pye~i~V~k~~~-----------------~~~e~lk~l~p~~qVP~LvDpndG 194 (224)
+.+++..- .||+..+++....++.- .|..+-+.+.++ ...+.+..+....++-++-. |-
T Consensus 87 ~gl~viDa-TCP~V~kv~~~v~~~~~~Gy~iiiiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l~~~~~v~vvsQ--TT 163 (280)
T TIGR00216 87 KGLEVIDA-TCPLVTKVHNAVKKYAKEGYHVILIGKKNHPEVIGTRGYAPDKAIVVETLEDLENFKVEDLLGVVSQ--TT 163 (280)
T ss_pred CCCeEEeC-CCcccHHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEECCHHHHHhCCCCCcEEEEEc--CC
Confidence 34677765 59999999988776643 477766644322 12233443333333333322 55
Q ss_pred eEeecHHHHHHHHHHHhCCCCCCC
Q 027373 195 VSMYESGDIVNYLFQQYGKGRSPS 218 (224)
Q Consensus 195 ~~L~ES~aIi~YL~e~y~~~~~p~ 218 (224)
..+.+-.+|+++|.++|+....+-
T Consensus 164 ~~~~~~~~i~~~l~~~~~~~~~~~ 187 (280)
T TIGR00216 164 LSQEDTKEIVAELKARVPQKEVPV 187 (280)
T ss_pred CcHHHHHHHHHHHHHhCCCcCCCC
Confidence 667788999999999996544443
No 261
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=35.64 E-value=47 Score=23.75 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEcCCChhHHHHHHHHHHc----C--CCcEEEEcCC
Q 027373 136 QLFEFEACPFCRRVREAITEL----D--LSVEVFPCPK 167 (224)
Q Consensus 136 ~LYs~e~cPfCrrVR~~L~El----g--Ipye~i~V~k 167 (224)
..|...||+.|++....|.++ + -.++.+-|..
T Consensus 6 l~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~ 43 (95)
T PF13905_consen 6 LYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSL 43 (95)
T ss_dssp EEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEe
Confidence 334455999999988888764 2 4555554443
No 262
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.61 E-value=38 Score=25.23 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHcCCCcEEEEc
Q 027373 144 PFCRRVREAITELDLSVEVFPC 165 (224)
Q Consensus 144 PfCrrVR~~L~ElgIpye~i~V 165 (224)
.||+|+..+|++.||+||..+-
T Consensus 16 GF~rk~L~I~E~~~is~Eh~PS 37 (76)
T cd04911 16 GFGRKLLSILEDNGISYEHMPS 37 (76)
T ss_pred cHHHHHHHHHHHcCCCEeeecC
Confidence 6999999999999999998764
No 263
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=34.46 E-value=2.2e+02 Score=22.66 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=43.1
Q ss_pred cEEEEEc--CCCh---hHHHHHHHHHHc--CCCcEEEEcCCCCc-cCHHHHHHhCCCC--cccEE-EeCCCC--e-Ee--
Q 027373 134 RLQLFEF--EACP---FCRRVREAITEL--DLSVEVFPCPKGSI-RHREMVRRLGGKE--QFPFL-IDPNTG--V-SM-- 197 (224)
Q Consensus 134 ~L~LYs~--e~cP---fCrrVR~~L~El--gIpye~i~V~k~~~-~~~e~lk~l~p~~--qVP~L-vDpndG--~-~L-- 197 (224)
-|+.|+- +||. .|..+-..+.+. .|.+-.++|+.-+. ...+ +.+..+-. .+|+| +..+++ . ..
T Consensus 21 vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~-L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~ 99 (116)
T cd03007 21 SLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNME-LGERYKLDKESYPVIYLFHGGDFENPVPYS 99 (116)
T ss_pred EEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHH-HHHHhCCCcCCCCEEEEEeCCCcCCCccCC
Confidence 4666666 8888 787776555443 35555566654221 2233 44455554 69977 333322 1 22
Q ss_pred ---ecHHHHHHHHHHH
Q 027373 198 ---YESGDIVNYLFQQ 210 (224)
Q Consensus 198 ---~ES~aIi~YL~e~ 210 (224)
....+|+.|+.++
T Consensus 100 G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 100 GADVTVDALQRFLKGN 115 (116)
T ss_pred CCcccHHHHHHHHHhc
Confidence 4456899998764
No 264
>PRK13599 putative peroxiredoxin; Provisional
Probab=34.45 E-value=84 Score=27.26 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=11.1
Q ss_pred cEEEEEcC--CChhHHHHH
Q 027373 134 RLQLFEFE--ACPFCRRVR 150 (224)
Q Consensus 134 ~L~LYs~e--~cPfCrrVR 150 (224)
.+.||.|+ +||.|..-.
T Consensus 30 ~vVL~~~pa~~tpvCt~El 48 (215)
T PRK13599 30 WFVLFSHPADFTPVCTTEF 48 (215)
T ss_pred eEEEEEeCCCCCCcCHHHH
Confidence 45566654 799998733
No 265
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=33.91 E-value=94 Score=23.72 Aligned_cols=21 Identities=24% Similarity=0.643 Sum_probs=13.3
Q ss_pred EEEEEcCCChh-HHHHHHHHHH
Q 027373 135 LQLFEFEACPF-CRRVREAITE 155 (224)
Q Consensus 135 L~LYs~e~cPf-CrrVR~~L~E 155 (224)
+..|...+||+ |.+-...|.+
T Consensus 26 vl~f~~~~C~~~C~~~l~~l~~ 47 (142)
T cd02968 26 LVYFGYTHCPDVCPTTLANLAQ 47 (142)
T ss_pred EEEEEcCCCcccCHHHHHHHHH
Confidence 44556689997 9765444443
No 266
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.07 E-value=56 Score=29.24 Aligned_cols=24 Identities=25% Similarity=0.679 Sum_probs=17.3
Q ss_pred cEEEEEcCCChhHHH----HHHHHHHcC
Q 027373 134 RLQLFEFEACPFCRR----VREAITELD 157 (224)
Q Consensus 134 ~L~LYs~e~cPfCrr----VR~~L~Elg 157 (224)
.|.+|+...||||.. ...++.+.+
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~ 34 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYP 34 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcC
Confidence 588889999999954 444555555
No 267
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=33.02 E-value=1.8e+02 Score=29.88 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=46.7
Q ss_pred cCCChhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeEeec-HHHHHHHHHHHh
Q 027373 140 FEACPFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVSMYE-SGDIVNYLFQQY 211 (224)
Q Consensus 140 ~e~cPfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~L~E-S~aIi~YL~e~y 211 (224)
-..++.|..|.+.|.+.||...+++...--+-..+.+.++.....+=+.+. +|..+.. -.+|+++|.+.-
T Consensus 510 G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~~La~~h~~~vtlE--e~~~~GG~Gs~v~efl~~~~ 580 (627)
T COG1154 510 GTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALLLELAKSHDLVVTLE--ENVVDGGFGSAVLEFLAAHG 580 (627)
T ss_pred chhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHHHHHHhhcCeEEEEe--cCcccccHHHHHHHHHHhcC
Confidence 346899999999999999999998754322334565666655544433333 4655554 567888887653
No 268
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=32.91 E-value=1.4e+02 Score=25.27 Aligned_cols=63 Identities=13% Similarity=0.356 Sum_probs=28.9
Q ss_pred EEEEEcCCChhHHHHHH-HH------HHcCCCcEEEEcCCCCcc-----CHHHHHHhCCCCcccEE--EeCCCCeEee
Q 027373 135 LQLFEFEACPFCRRVRE-AI------TELDLSVEVFPCPKGSIR-----HREMVRRLGGKEQFPFL--IDPNTGVSMY 198 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~-~L------~ElgIpye~i~V~k~~~~-----~~e~lk~l~p~~qVP~L--vDpndG~~L~ 198 (224)
+.-.++.+|.+|+.... .+ +.++-.|.-+-|+.++.. ...+...+++.+..|.- .+| +|..++
T Consensus 41 fl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltP-dg~p~~ 117 (163)
T PF03190_consen 41 FLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTP-DGKPFF 117 (163)
T ss_dssp EEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-T-TS-EEE
T ss_pred EEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECC-CCCeee
Confidence 44457789999986543 33 333445666666654311 11222234578889954 566 676555
No 269
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=31.18 E-value=97 Score=25.13 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=30.2
Q ss_pred CcEEEEEcC--CChhHHHH--------HHHHHHcCCC-cEEEEcCCCCccCHHHHHHhCCC-CcccEEEeC
Q 027373 133 TRLQLFEFE--ACPFCRRV--------REAITELDLS-VEVFPCPKGSIRHREMVRRLGGK-EQFPFLIDP 191 (224)
Q Consensus 133 ~~L~LYs~e--~cPfCrrV--------R~~L~ElgIp-ye~i~V~k~~~~~~e~lk~l~p~-~qVP~LvDp 191 (224)
+.+.||.|+ +||.|..= ..-+..+|+. +--+..+.. ....+|.++ ... ..+|.|-|+
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~-~~~~~~~~~-~~~~~~f~lLsD~ 98 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDP-FVMKAWGKA-LGAKDKIRFLADG 98 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCH-HHHHHHHHh-hCCCCcEEEEECC
Confidence 356666665 69999764 3344445553 433443322 123344433 322 368888875
No 270
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=30.22 E-value=53 Score=22.67 Aligned_cols=33 Identities=9% Similarity=-0.054 Sum_probs=20.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEEcCC
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFPCPK 167 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k 167 (224)
.+||....-.-+..++.+|++.||++...+-..
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S---
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 367887766789999999999999998876543
No 271
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=28.10 E-value=1.2e+02 Score=24.07 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=13.9
Q ss_pred EEEEEcCCChhHHHHHHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITE 155 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~E 155 (224)
+..+...+||+|++-..-|.+
T Consensus 26 vv~~~as~C~~c~~~~~~l~~ 46 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRALQE 46 (153)
T ss_pred EEEEeCCCCCchhhhHHHHHH
Confidence 455566799999875554433
No 272
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=27.92 E-value=1.3e+02 Score=29.94 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=14.4
Q ss_pred EEEcCCChhHHHHHHHHHHc
Q 027373 137 LFEFEACPFCRRVREAITEL 156 (224)
Q Consensus 137 LYs~e~cPfCrrVR~~L~El 156 (224)
-|.-.|||.|++..-.|.++
T Consensus 62 ~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 62 KFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEcCCCHHHHHHHHHHHHH
Confidence 33456999999987776654
No 273
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.66 E-value=1.2e+02 Score=21.46 Aligned_cols=33 Identities=15% Similarity=0.348 Sum_probs=27.7
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCcEEEEcCCC
Q 027373 136 QLFEFEACPFCRRVREAITELDLSVEVFPCPKG 168 (224)
Q Consensus 136 ~LYs~e~cPfCrrVR~~L~ElgIpye~i~V~k~ 168 (224)
-+..|+...+..++..+|.+.|+++.+++++..
T Consensus 4 ~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~ 36 (73)
T PF11823_consen 4 YLITFPSTHDAMKAEKLLKKNGIPVRLIPTPRE 36 (73)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCcEEEeCCChh
Confidence 355677778999999999999999999998753
No 274
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=25.75 E-value=84 Score=24.31 Aligned_cols=62 Identities=6% Similarity=0.113 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHcCCCcEEEEcCCCC--------------c---cCHHHHHHhCCCCcccEEEeCCCCeE--eecHHHHHH
Q 027373 145 FCRRVREAITELDLSVEVFPCPKGS--------------I---RHREMVRRLGGKEQFPFLIDPNTGVS--MYESGDIVN 205 (224)
Q Consensus 145 fCrrVR~~L~ElgIpye~i~V~k~~--------------~---~~~e~lk~l~p~~qVP~LvDpndG~~--L~ES~aIi~ 205 (224)
-+.+++.+++++|++++..-++..+ + ..-+.+++..+...+|+.+.+-.... +.+-..|++
T Consensus 16 la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~~Yg~~~~dg~~vl~ 95 (99)
T cd05565 16 LANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGKQYIELTRDPDGALK 95 (99)
T ss_pred HHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHHHHhHHhCCHHHHHH
Confidence 5788999999999998876543211 0 11133455555667888754212223 666666665
Q ss_pred H
Q 027373 206 Y 206 (224)
Q Consensus 206 Y 206 (224)
.
T Consensus 96 ~ 96 (99)
T cd05565 96 F 96 (99)
T ss_pred H
Confidence 4
No 275
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.71 E-value=1.3e+02 Score=28.09 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=47.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHHcCC----CcEE--EEcCCCCccCHHHHHHhCCCCcccEEEeCCCCeE------eecHH
Q 027373 134 RLQLFEFEACPFCRRVREAITELDL----SVEV--FPCPKGSIRHREMVRRLGGKEQFPFLIDPNTGVS------MYESG 201 (224)
Q Consensus 134 ~L~LYs~e~cPfCrrVR~~L~ElgI----pye~--i~V~k~~~~~~e~lk~l~p~~qVP~LvDpndG~~------L~ES~ 201 (224)
-+++|..+||+.|+...-.|+.+-- .|.+ ++|+.. +. +....+-..||+++-=.+|.. +---.
T Consensus 46 VlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~----p~-vAaqfgiqsIPtV~af~dGqpVdgF~G~qPes 120 (304)
T COG3118 46 VLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE----PM-VAAQFGVQSIPTVYAFKDGQPVDGFQGAQPES 120 (304)
T ss_pred eEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc----hh-HHHHhCcCcCCeEEEeeCCcCccccCCCCcHH
Confidence 3777888999999999988876633 3444 455432 33 445667788997732124433 22245
Q ss_pred HHHHHHHHHhCC
Q 027373 202 DIVNYLFQQYGK 213 (224)
Q Consensus 202 aIi~YL~e~y~~ 213 (224)
.|-++|++.-+.
T Consensus 121 qlr~~ld~~~~~ 132 (304)
T COG3118 121 QLRQFLDKVLPA 132 (304)
T ss_pred HHHHHHHHhcCh
Confidence 788888876543
No 276
>PRK15000 peroxidase; Provisional
Probab=24.77 E-value=1.6e+02 Score=25.01 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=14.8
Q ss_pred CcEEEEEcC--CChhHHHHHHHHH
Q 027373 133 TRLQLFEFE--ACPFCRRVREAIT 154 (224)
Q Consensus 133 ~~L~LYs~e--~cPfCrrVR~~L~ 154 (224)
+.+.|+.++ +||.|..-...|.
T Consensus 35 k~vvL~F~p~~~t~vC~~El~~l~ 58 (200)
T PRK15000 35 KTTVLFFWPMDFTFVCPSELIAFD 58 (200)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHH
Confidence 467777776 6999987444443
No 277
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=24.74 E-value=2.4e+02 Score=23.74 Aligned_cols=57 Identities=23% Similarity=0.390 Sum_probs=32.7
Q ss_pred cEEEEEcC--CChhHHH----HHHHHHHc-CCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeC
Q 027373 134 RLQLFEFE--ACPFCRR----VREAITEL-DLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDP 191 (224)
Q Consensus 134 ~L~LYs~e--~cPfCrr----VR~~L~El-gIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDp 191 (224)
.++||-|+ ++|-|-+ -|..+.|. .+..+++=|..+.....+.+++.++.. +|.|-|+
T Consensus 32 ~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~-f~LLSD~ 95 (157)
T COG1225 32 PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT-FPLLSDE 95 (157)
T ss_pred cEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC-ceeeECC
Confidence 68898886 5666633 33333332 345566666655544433344555443 9999885
No 278
>PRK13191 putative peroxiredoxin; Provisional
Probab=24.57 E-value=1.4e+02 Score=25.75 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=12.5
Q ss_pred cEEEEEc--CCChhHHHHHHHHH
Q 027373 134 RLQLFEF--EACPFCRRVREAIT 154 (224)
Q Consensus 134 ~L~LYs~--e~cPfCrrVR~~L~ 154 (224)
.+.||.| .+||.|..-...|.
T Consensus 35 ~vvLff~pa~ftpvC~tEl~~l~ 57 (215)
T PRK13191 35 WFVLFSHPGDFTPVCTTEFYSFA 57 (215)
T ss_pred cEEEEEeCCCCCCcCHHHHHHHH
Confidence 4555544 47898877444443
No 279
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.50 E-value=29 Score=28.36 Aligned_cols=67 Identities=19% Similarity=0.135 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCCCCcccEEEeCC-CCeEeecHHHHHHHHHHH
Q 027373 144 PFCRRVREAITELDLSVEVFPCPKGSIRHREMVRRLGGKEQFPFLIDPN-TGVSMYESGDIVNYLFQQ 210 (224)
Q Consensus 144 PfCrrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p~~qVP~LvDpn-dG~~L~ES~aIi~YL~e~ 210 (224)
-|-..+++++.+.|++.+.+.++.......+.-....=.+.+|.++|-- --...-|...||.||.++
T Consensus 23 kfP~LakEl~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~ 90 (128)
T PF09868_consen 23 KFPALAKELEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKR 90 (128)
T ss_pred HhHHHHHHHhccCCCceeeeechhhhhhhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 3677899999999999887665432110000000111257789887620 113456788899999764
No 280
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=24.46 E-value=1.5e+02 Score=27.69 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCCcEEEE-cCCCCcc---C------HHHHHHhCCCCcccEEEe
Q 027373 147 RRVREAITELDLSVEVFP-CPKGSIR---H------REMVRRLGGKEQFPFLID 190 (224)
Q Consensus 147 rrVR~~L~ElgIpye~i~-V~k~~~~---~------~e~lk~l~p~~qVP~LvD 190 (224)
+++-+...++|+.|.++. |+.++.. . -..+++.+|..+|=+|+-
T Consensus 103 ~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~P 156 (306)
T COG0320 103 ERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTP 156 (306)
T ss_pred HHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCc
Confidence 578899999999999873 4443311 1 134567899988888863
No 281
>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1.4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.
Probab=24.22 E-value=66 Score=27.60 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHhCCC---CCCCCCCcCC
Q 027373 199 ESGDIVNYLFQQYGKG---RSPSTGLLER 224 (224)
Q Consensus 199 ES~aIi~YL~e~y~~~---~~p~~g~l~r 224 (224)
|-.+|++||.++||.. ..+-+=+|||
T Consensus 55 er~avVkYLAd~~GLap~Et~~~ry~~er 83 (167)
T PF09098_consen 55 ERRAVVKYLADTQGLAPSETAPVRYALER 83 (167)
T ss_dssp HHHHHHHHHHHHT---CGGCTT-CCCCCT
T ss_pred HHHHHHHHHHHccCCCchhhcchhhhhhc
Confidence 5679999999999842 2333345554
No 282
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=24.02 E-value=1.4e+02 Score=24.96 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=19.6
Q ss_pred ChhHHHHHHHHHHcCCCcEEEEcCC
Q 027373 143 CPFCRRVREAITELDLSVEVFPCPK 167 (224)
Q Consensus 143 cPfCrrVR~~L~ElgIpye~i~V~k 167 (224)
-+++++++..|++.||+|+..-+..
T Consensus 13 ~~~~~~a~~~L~~~gi~~~~~V~sa 37 (150)
T PF00731_consen 13 LPIAEEAAKTLEEFGIPYEVRVASA 37 (150)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--T
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEec
Confidence 4799999999999999999877653
No 283
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=23.93 E-value=1.6e+02 Score=28.05 Aligned_cols=71 Identities=17% Similarity=0.274 Sum_probs=44.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCC-----------cEEEEcCCCCccCHHHHHHhCCCCcccEE-EeCCCCeEee-c--
Q 027373 135 LQLFEFEACPFCRRVREAITELDLS-----------VEVFPCPKGSIRHREMVRRLGGKEQFPFL-IDPNTGVSMY-E-- 199 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIp-----------ye~i~V~k~~~~~~e~lk~l~p~~qVP~L-vDpndG~~L~-E-- 199 (224)
+.=|+-+||||+++..-.+.|.--. +-.++|++. +.+...+--.+.|+| +.- .|..|. |
T Consensus 17 fv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-----~~ia~ky~I~KyPTlKvfr-nG~~~~rEYR 90 (375)
T KOG0912|consen 17 FVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-----DDIADKYHINKYPTLKVFR-NGEMMKREYR 90 (375)
T ss_pred eeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-----hHHhhhhccccCceeeeee-ccchhhhhhc
Confidence 4445667999999999888876322 223455543 234444555678888 433 466555 2
Q ss_pred ----HHHHHHHHHHHh
Q 027373 200 ----SGDIVNYLFQQY 211 (224)
Q Consensus 200 ----S~aIi~YL~e~y 211 (224)
-.|+++|+..+-
T Consensus 91 g~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 91 GQRSVEALIEFIEKQL 106 (375)
T ss_pred cchhHHHHHHHHHHHh
Confidence 457788887654
No 284
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=22.83 E-value=1.7e+02 Score=27.93 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=43.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHcCCCcEEEE----cCCCCc-cCHHHHHHhCCCCcccEEEeCCCCeE-----eecHHHHH
Q 027373 135 LQLFEFEACPFCRRVREAITELDLSVEVFP----CPKGSI-RHREMVRRLGGKEQFPFLIDPNTGVS-----MYESGDIV 204 (224)
Q Consensus 135 L~LYs~e~cPfCrrVR~~L~ElgIpye~i~----V~k~~~-~~~e~lk~l~p~~qVP~LvDpndG~~-----L~ES~aIi 204 (224)
++=|+-+||.+|++..-+.++.|.....+. |.+-+. ..+. +....+-...|.+..-.+|.. --|-.+|+
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~a-iAnefgiqGYPTIk~~kgd~a~dYRG~R~Kd~ii 125 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPA-IANEFGIQGYPTIKFFKGDHAIDYRGGREKDAII 125 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchh-hHhhhccCCCceEEEecCCeeeecCCCccHHHHH
Confidence 455667899999999999999887766543 222221 2222 333334455676622112322 24678888
Q ss_pred HHHHHH
Q 027373 205 NYLFQQ 210 (224)
Q Consensus 205 ~YL~e~ 210 (224)
++-.+-
T Consensus 126 eFAhR~ 131 (468)
T KOG4277|consen 126 EFAHRC 131 (468)
T ss_pred HHHHhc
Confidence 876543
No 285
>PRK09266 hypothetical protein; Provisional
Probab=22.54 E-value=1.5e+02 Score=26.08 Aligned_cols=65 Identities=11% Similarity=0.116 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCCcEEEEcCCCCccCHHHHHHhCC-CCcccEEEeCCCCeEeecHHHHHHHHHHHhCC
Q 027373 147 RRVREAITELDLSVEVFPCPKGSIRHREMVRRLGG-KEQFPFLIDPNTGVSMYESGDIVNYLFQQYGK 213 (224)
Q Consensus 147 rrVR~~L~ElgIpye~i~V~k~~~~~~e~lk~l~p-~~qVP~LvDpndG~~L~ES~aIi~YL~e~y~~ 213 (224)
+.+...+.++|+++++..+...+-...+.+.-.|- .+-+|+... ++..+.....|.+.|.+.|-.
T Consensus 195 ~~ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i--~~~~~~~~~~~~~~l~~~~~~ 260 (266)
T PRK09266 195 ALLQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAI--DDVALPDSHALLELLRRAYEA 260 (266)
T ss_pred HHHHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEE--CCEECCCCchHHHHHHHHHHh
Confidence 45556777889999998887654333232322333 578898854 466565457888888888853
No 286
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=22.42 E-value=34 Score=24.26 Aligned_cols=44 Identities=25% Similarity=0.421 Sum_probs=26.4
Q ss_pred ceeeeeccCCCCCCccCccccccCCCccccccceecccCCCCCC
Q 027373 10 QSVLFSSTNPAHNFSSLSHRSSRNGNWVSGRNRLHAKSADPDAG 53 (224)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (224)
..+..+..|+.+-|+.-+=+.-.-|.|..+..||.+...+++..
T Consensus 10 k~~~~~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~~~~~~~ 53 (57)
T PF03884_consen 10 KPVEWSPENPFRPFCSERCKLIDLGRWANEEYRIPGEPDDEDED 53 (57)
T ss_dssp -EEE-SSSSS--SSSSHHHHHHHHS-SSSSS----SSS-SS-S-
T ss_pred CeecccCCCCcCCcccHhhcccCHHHHhcCCcccCCCCCCcccc
Confidence 45677788888888888878888899999999999988765543
No 287
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=21.34 E-value=2e+02 Score=25.98 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=11.8
Q ss_pred CcEEEEEc--CCChhHHH
Q 027373 133 TRLQLFEF--EACPFCRR 148 (224)
Q Consensus 133 ~~L~LYs~--e~cPfCrr 148 (224)
+.+.||.+ .+||.|..
T Consensus 99 k~vVL~FyPa~ftpvCt~ 116 (261)
T PTZ00137 99 SYGLLVFYPLDFTFVCPS 116 (261)
T ss_pred CeEEEEEECCCCCCCCHH
Confidence 35667755 68999987
No 288
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=20.43 E-value=1.4e+02 Score=25.04 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=17.3
Q ss_pred cEEEEEc--CCChhHHHHHHHH-------HHcCCCcEEEEcC
Q 027373 134 RLQLFEF--EACPFCRRVREAI-------TELDLSVEVFPCP 166 (224)
Q Consensus 134 ~L~LYs~--e~cPfCrrVR~~L-------~ElgIpye~i~V~ 166 (224)
.+.|+.+ .+||.|......| .++|+.+--+.++
T Consensus 38 ~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d 79 (199)
T PTZ00253 38 WVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD 79 (199)
T ss_pred EEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4555555 4677776544333 3345555555544
No 289
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=20.08 E-value=1e+02 Score=23.42 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=27.4
Q ss_pred EEEcCCChhHHHHHHHHHHc-----CCCcEEEEcCCC------C-ccCHHHHHHhCCCCcccEEEeC
Q 027373 137 LFEFEACPFCRRVREAITEL-----DLSVEVFPCPKG------S-IRHREMVRRLGGKEQFPFLIDP 191 (224)
Q Consensus 137 LYs~e~cPfCrrVR~~L~El-----gIpye~i~V~k~------~-~~~~e~lk~l~p~~qVP~LvDp 191 (224)
.|...+||+|++-.-.|.++ +..+.++-|... . ....+++++ + ...+|++.|+
T Consensus 29 ~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~-~-~~~~p~~~D~ 93 (126)
T cd03012 29 DFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLR-Y-GITYPVANDN 93 (126)
T ss_pred EEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHH-c-CCCCCEEECC
Confidence 33445899999876555543 233445444221 1 112234432 3 2458888774
Done!