Query 027374
Match_columns 224
No_of_seqs 138 out of 1123
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:00:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14348 lipoate-protein ligas 100.0 3.6E-73 7.8E-78 487.0 21.4 206 7-215 3-218 (221)
2 PRK14342 lipoate-protein ligas 100.0 1.5E-72 3.2E-77 480.8 20.9 202 5-217 4-205 (213)
3 PRK14345 lipoate-protein ligas 100.0 2.3E-72 5.1E-77 485.8 21.9 203 4-217 9-217 (234)
4 PRK14341 lipoate-protein ligas 100.0 2.7E-72 5.8E-77 479.5 21.0 203 4-216 2-212 (213)
5 PRK14343 lipoate-protein ligas 100.0 2.1E-71 4.6E-76 478.5 22.0 203 4-216 12-219 (235)
6 COG0321 LipB Lipoate-protein l 100.0 1.1E-71 2.3E-76 472.0 19.5 203 5-217 9-212 (221)
7 PRK14347 lipoate-protein ligas 100.0 5.3E-71 1.2E-75 469.4 21.0 200 7-216 3-209 (209)
8 PRK14344 lipoate-protein ligas 100.0 6E-71 1.3E-75 472.8 21.5 203 6-215 18-221 (223)
9 PRK14346 lipoate-protein ligas 100.0 1.9E-70 4.1E-75 470.9 21.1 199 6-215 2-228 (230)
10 PRK14349 lipoate-protein ligas 100.0 2.7E-70 5.8E-75 467.3 21.4 200 9-219 2-208 (220)
11 TIGR00214 lipB lipoate-protein 100.0 2.6E-65 5.6E-70 427.8 17.1 176 33-215 8-183 (184)
12 KOG0325 Lipoyltransferase [Ene 100.0 5E-55 1.1E-59 368.5 18.5 210 1-216 1-217 (226)
13 TIGR00545 lipoyltrans lipoyltr 99.8 5.2E-20 1.1E-24 166.8 17.2 188 9-203 3-200 (324)
14 PRK03822 lplA lipoate-protein 99.8 1.1E-19 2.5E-24 165.4 16.8 204 5-220 2-221 (338)
15 PRK14061 unknown domain/lipoat 99.8 4.9E-18 1.1E-22 162.6 17.4 205 4-220 225-445 (562)
16 COG0095 LplA Lipoate-protein l 99.8 1.5E-17 3.3E-22 145.5 16.6 197 7-212 2-215 (248)
17 PF03099 BPL_LplA_LipB: Biotin 99.6 7.1E-15 1.5E-19 114.0 8.3 115 51-168 1-125 (125)
18 PRK08330 biotin--protein ligas 99.5 9.4E-14 2E-18 120.5 12.5 115 79-203 42-156 (236)
19 KOG3159 Lipoate-protein ligase 98.9 1.6E-08 3.6E-13 90.2 12.6 172 7-189 11-189 (336)
20 PRK05935 biotin--protein ligas 98.6 8.6E-07 1.9E-11 75.0 12.9 118 79-203 44-165 (190)
21 COG0340 BirA Biotin-(acetyl-Co 98.3 3E-06 6.6E-11 74.1 9.6 117 78-203 35-157 (238)
22 TIGR00121 birA_ligase birA, bi 98.2 1.2E-05 2.5E-10 69.9 10.4 117 78-203 39-160 (237)
23 PTZ00275 biotin-acetyl-CoA-car 97.9 0.00018 4E-09 64.4 12.5 107 81-196 72-190 (285)
24 PRK11886 bifunctional biotin-- 97.9 0.00015 3.2E-09 65.5 11.4 118 78-203 116-239 (319)
25 PTZ00276 biotin/lipoate protei 97.8 0.00023 4.9E-09 62.4 10.2 89 79-169 47-138 (245)
26 PRK08477 biotin--protein ligas 97.4 0.0019 4.1E-08 55.6 10.5 88 79-168 42-131 (211)
27 PRK13325 bifunctional biotin-- 97.2 0.0016 3.5E-08 64.0 9.3 89 77-167 122-215 (592)
28 PRK06955 biotin--protein ligas 97.2 0.0038 8.3E-08 56.2 11.0 121 77-203 77-216 (300)
29 KOG0325 Lipoyltransferase [Ene 91.8 0.11 2.3E-06 45.0 2.0 33 68-101 140-172 (226)
30 PF04017 DUF366: Domain of unk 78.6 3.2 7E-05 35.0 4.1 54 113-171 87-142 (183)
31 COG2029 Uncharacterized conser 76.6 7.8 0.00017 32.5 5.7 52 112-168 89-142 (189)
32 KOG1536 Biotin holocarboxylase 69.5 35 0.00076 33.7 9.1 90 77-168 425-526 (649)
33 PF13823 ADH_N_assoc: Alcohol 59.4 6.7 0.00014 22.1 1.4 11 83-93 4-14 (23)
34 PF09322 DUF1979: Domain of un 35.6 31 0.00066 23.5 1.9 38 84-121 9-54 (58)
35 COG2333 ComEC Predicted hydrol 33.4 54 0.0012 29.7 3.8 46 47-92 235-281 (293)
36 cd04863 MtLigD_Pol_like MtLigD 29.0 1.9E+02 0.0041 25.4 6.3 46 94-140 104-150 (231)
37 COG3127 Predicted ABC-type tra 27.8 13 0.00027 38.0 -1.4 82 86-169 529-630 (829)
38 COG3818 Predicted acetyltransf 25.3 30 0.00065 28.1 0.6 16 35-50 70-85 (167)
39 COG4874 Uncharacterized protei 23.2 4E+02 0.0086 24.0 7.2 78 65-142 64-155 (318)
40 PRK05761 DNA polymerase I; Rev 23.1 1.8E+02 0.0039 30.0 5.8 42 87-128 721-772 (787)
41 COG3052 CitD Citrate lyase, ga 22.7 1.1E+02 0.0023 23.2 3.0 22 107-128 39-60 (98)
42 PRK11539 ComEC family competen 20.2 1.2E+02 0.0027 30.8 3.9 24 65-88 704-727 (755)
No 1
>PRK14348 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=3.6e-73 Score=486.96 Aligned_cols=206 Identities=37% Similarity=0.642 Sum_probs=190.0
Q ss_pred eEEEEcCcccHHHHHHHHHHHHHHHhc----CC-CCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCC
Q 027374 7 LQIWRLGIVNYSDALKLQEKLVSDRKI----HK-ISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGG 81 (224)
Q Consensus 7 ~~~~~lG~~~y~~~~~~q~~~~~~~~~----~~-~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG 81 (224)
..+.++|+++|++||++|+++++++.+ +. .+|+||+||||||||+|++++.++++.+.+.+++.|++|++++|||
T Consensus 3 ~~~~~lg~~~Y~~a~~~q~~~~~~~~~~~~~~~~~~d~llllEH~pVyT~G~~~~~~~ll~~~~~l~~~~~~v~~t~RGG 82 (221)
T PRK14348 3 TITTDWELIPYSEAWSRQTEWFDALVHAKQNGESYENRIIFCEHPHVYTLGRSGKENNMLLGEEQLKTIGATLYHIDRGG 82 (221)
T ss_pred EEEEecCCcCHHHHHHHHHHHHHHHHhhhhcCCCCCCEEEEEcCCCCeeCCcCCCchhccCChhhhcccCCcEEEeCCCC
Confidence 467899999999999999988876543 22 3699999999999999999999999988888999999999999999
Q ss_pred ceeEeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEec-----CCeEEEeceeeeccE
Q 027374 82 DITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVG-----DRKIGAIGVRIQYGI 156 (224)
Q Consensus 82 ~iTyHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~-----~rKIasiGv~i~~~v 156 (224)
++|||||||||+|||+||++++.++++|++.||+++|++|++|||++ .+.++++|||++ ++||||||+++++||
T Consensus 83 ~iTyHGPGQlV~Ypil~L~~~~~~v~~yv~~lE~~vI~~l~~~gi~~-~~~~~~~GVWv~~~~~~~~KIaaIGv~v~r~v 161 (221)
T PRK14348 83 DITYHGPGQLVCYPILNLEEFGLGLKEYVHLLEEAVIRVCASYGVVA-GRLEKATGVWLEGDTSRARKICAIGVRSSHYV 161 (221)
T ss_pred ceEEECCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCce-eecCCCCCEEecCCCCCCCcEEEEeEEeccce
Confidence 99999999999999999999999999999999999999999999999 577899999998 589999999999999
Q ss_pred EEeeeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccchHHHHHHHHhhh
Q 027374 157 TSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEPLDSHKKNFIKIS 215 (224)
Q Consensus 157 t~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~~~~~~~~f~~~~ 215 (224)
||||||||||+||++|+.|+|||++|..||||++++|.++++++|++. +.++|.+.|
T Consensus 162 T~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~~~g~~~~~~~v~~~--l~~~f~~~~ 218 (221)
T PRK14348 162 TMHGLALNVNTDLRYFSYIHPCGFIDKGVTSLQQELGHSIDMAEVKER--LGRELLAAL 218 (221)
T ss_pred eecceEEEecCChHHhccCccCCCCCCcEEeeHHHhCCCCCHHHHHHH--HHHHHHHHH
Confidence 999999999999999999999999999999999889999999999883 566666554
No 2
>PRK14342 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=1.5e-72 Score=480.82 Aligned_cols=202 Identities=28% Similarity=0.559 Sum_probs=186.9
Q ss_pred ceeEEEEcCcccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCcee
Q 027374 5 RSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDIT 84 (224)
Q Consensus 5 ~~~~~~~lG~~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~iT 84 (224)
+.+.+.++|+++|++||++|+++++++.++ .+|+||+||||||||+|++++.++++.+ .++++++++|||++|
T Consensus 4 ~~~~~~~lg~~~Y~~a~~~Q~~l~~~~~~~-~~d~llllEH~pVyT~Gr~~~~~~ll~~------~~~~v~~~~RGG~iT 76 (213)
T PRK14342 4 NKLIVRQLGLQPYEPVWQAMQEFTDTRDEE-TPDEIWLVEHPPVFTQGQAGKPEHILNP------GDIPVVQSDRGGQVT 76 (213)
T ss_pred CeEEEEeCCCcCHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCCccCCCCCChhhccCC------CCCcEEEecCCCceE
Confidence 668999999999999999999999887554 6799999999999999999999888743 389999999999999
Q ss_pred EeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEeceeeeccEEEeeeeee
Q 027374 85 FHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFN 164 (224)
Q Consensus 85 yHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~i~~~vt~HG~aLN 164 (224)
||||||||+|||+||++++.++++|++.||+++|++|++|||+| .+.++.+|||++++||||||+++++|||+||||||
T Consensus 77 yHGPGQLV~YpIl~L~~~~~~~~~yv~~lE~~vi~~l~~~gi~~-~~~~~~~GVWv~~~KIaaIGv~v~r~vT~HG~AlN 155 (213)
T PRK14342 77 YHGPGQLVMYVLLDLKRLKLGVRQLVTAIEQTVINTLAEYGIEA-HAKPDAPGVYVDGKKIASLGLRIRRGCSFHGLALN 155 (213)
T ss_pred EECCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCce-eecCCCCcCcccCCEEEEEEEeEecceeecceeEe
Confidence 99999999999999999999999999999999999999999999 57789999999999999999999999999999999
Q ss_pred ccCCccccccccCCCCCCCceeeehhhhCCCCCcccccchHHHHHHHHhhhcC
Q 027374 165 IDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEPLDSHKKNFIKISIK 217 (224)
Q Consensus 165 v~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~~~~~~~~f~~~~~~ 217 (224)
||+||++|+.|+|||++|+.||||++ +|.++++++|++. +.++|.+.|..
T Consensus 156 v~~dL~~F~~IvPCGl~~~~vTSl~~-~~~~~~~~~v~~~--~~~~f~~~f~~ 205 (213)
T PRK14342 156 VNMDLSPFLRINPCGYAGLEMTQLSD-LGGPATVDEVAPR--LLAELLALLGY 205 (213)
T ss_pred cCCCchhhCcEecCCCCCCcEeeHHH-hCCCCCHHHHHHH--HHHHHHHHhCC
Confidence 99999999999999999999999986 6889999999883 66666666653
No 3
>PRK14345 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=2.3e-72 Score=485.82 Aligned_cols=203 Identities=39% Similarity=0.651 Sum_probs=187.5
Q ss_pred CceeEEEEcCcccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCce
Q 027374 4 PRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDI 83 (224)
Q Consensus 4 ~~~~~~~~lG~~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~i 83 (224)
++.+.++++|+++|+++|++|+++++++.++..+|+||+||||||||+|++++.++++. .+++|++++|||++
T Consensus 9 ~~~~~~~~lG~~~Y~~~~~~Q~~l~~~~~~~~~~d~llllEH~pVyT~Gr~~~~~~l~~-------~~i~v~~tdRGG~i 81 (234)
T PRK14345 9 TMPIEVRRLGLVDYQEAWDLQRELADARVAGEGPDTLLLLEHPAVYTAGKRTEPHERPT-------DGTPVVDVDRGGKI 81 (234)
T ss_pred CCceEEEECCCcCHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccCCCCCCcccccc-------CCCcEEEecCCCce
Confidence 46689999999999999999999999998877889999999999999999999887652 37999999999999
Q ss_pred eEeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEec------CCeEEEeceeeeccEE
Q 027374 84 TFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVG------DRKIGAIGVRIQYGIT 157 (224)
Q Consensus 84 TyHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~------~rKIasiGv~i~~~vt 157 (224)
|||||||||+|||+||++ +.++++|++.||+++|++|++|||++ .+.++++||||+ ++||||||+++++|||
T Consensus 82 TyHGPGQLV~YpIldL~~-~~~v~~yv~~LE~~vI~~l~~~gi~a-~~~~~~~GVWv~~~~~~~~~KIaaIGv~v~r~vT 159 (234)
T PRK14345 82 TWHGPGQLVGYPIIKLAE-PLDVVDYVRRLEEALIAVCADLGLNA-GRVDGRSGVWVPADGGRPDRKIAAIGIRVSRGVT 159 (234)
T ss_pred eEeCCCeEEEEEEEecCC-CCCHHHHHHHHHHHHHHHHHHcCCce-eecCCCCeEEECCCCCCCcceEEEEEeeecccee
Confidence 999999999999999998 68999999999999999999999999 577899999997 6999999999999999
Q ss_pred EeeeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccchHHHHHHHHhhhcC
Q 027374 158 SHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEPLDSHKKNFIKISIK 217 (224)
Q Consensus 158 ~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~~~~~~~~f~~~~~~ 217 (224)
+||||||||+||++|+.|+|||++|..||||++++|.++++++|++. +.++|.+.|..
T Consensus 160 ~HG~ALNV~~DL~~F~~IvPCGl~~~~vTSl~~~~g~~~~~~~v~~~--l~~~f~~~f~~ 217 (234)
T PRK14345 160 MHGFALNCDNDLAAFDAIVPCGISDAGVTTLSAELGRTVTVAEVVDP--VAAALCDALDG 217 (234)
T ss_pred ecceEEEeCCChHHhceEEeCCCCCCcEEehhHhhCCCCCHHHHHHH--HHHHHHHHhCc
Confidence 99999999999999999999999999999999889999999999983 55566666543
No 4
>PRK14341 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=2.7e-72 Score=479.46 Aligned_cols=203 Identities=32% Similarity=0.534 Sum_probs=188.3
Q ss_pred CceeEEEEcCcccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCce
Q 027374 4 PRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDI 83 (224)
Q Consensus 4 ~~~~~~~~lG~~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~i 83 (224)
+....++++|+++|+++|++|+++++++.++..+|+||+||||||||+|++++.++++.+ .+++|++|+|||++
T Consensus 2 ~~~~~~~~~g~~~Y~~~~~~q~~~~~~~~~~~~~~~llllEH~pVyT~G~~~~~~~ll~~------~~i~v~~t~RGG~i 75 (213)
T PRK14341 2 PPVEWRISDGLVPYPEALAFMEARVAAIAAGTADELVWLLEHPPLYTAGTSAKAEDLLDP------DRFPVYETGRGGQY 75 (213)
T ss_pred CceEEEecCCccCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCeeCCCCCChhhccCC------CCCCEEEeCCCcce
Confidence 345677889999999999999999999988888999999999999999999998888743 48999999999999
Q ss_pred eEeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEecC--------CeEEEeceeeecc
Q 027374 84 TFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGD--------RKIGAIGVRIQYG 155 (224)
Q Consensus 84 TyHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~--------rKIasiGv~i~~~ 155 (224)
|||||||||+|||+||++++.++++|++.||+++|++|++|||++ .+.++.+|||+++ +||||||+++++|
T Consensus 76 TyHGPGQlV~YpIl~L~~~~~~v~~yv~~lE~~iI~~l~~~gi~~-~~~~~~~GVWv~~~~~~~~~~~KIaaIGv~v~r~ 154 (213)
T PRK14341 76 TYHGPGQRVAYVMLDLKRRRRDVRAFVAALEEWIIATLAAFNIRG-ERREDRVGVWVRRPDKGSGAEDKIAAIGVRLRRW 154 (213)
T ss_pred eEECCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHhCCce-EEcCCCCeEEecCccCCCCCCCcEEEEeeeEecc
Confidence 999999999999999999999999999999999999999999999 5778999999984 8999999999999
Q ss_pred EEEeeeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccchHHHHHHHHhhhc
Q 027374 156 ITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEPLDSHKKNFIKISI 216 (224)
Q Consensus 156 vt~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~~~~~~~~f~~~~~ 216 (224)
||+||||||||+||++|+.|+|||++|..||||++ +|.+++++++++. +.++|.+.|.
T Consensus 155 vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~-~g~~~~~~~v~~~--l~~~f~~~f~ 212 (213)
T PRK14341 155 VSFHGISINVEPDLSHFSGIVPCGISEHGVTSLVD-LGLPVTMDDVDAA--LKKAFEKVFG 212 (213)
T ss_pred eeccceEEEecCChhhhCcEecCCCCCCcEeeHHH-hCCCCCHHHHHHH--HHHHHHHHhC
Confidence 99999999999999999999999999999999987 8999999999884 6677777664
No 5
>PRK14343 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=2.1e-71 Score=478.51 Aligned_cols=203 Identities=28% Similarity=0.518 Sum_probs=186.5
Q ss_pred CceeEEEEcCcccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCce
Q 027374 4 PRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDI 83 (224)
Q Consensus 4 ~~~~~~~~lG~~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~i 83 (224)
++.+.++++|+++|.++|++|+++++.+.++ .+|+|||||||||||+|++++.++++.+ ..+++|++++|||++
T Consensus 12 ~~~~~v~~lG~v~Y~~a~~~q~~~~~~~~~~-~~d~llllEHppVyT~G~~~~~~~ll~~-----~~~i~v~~tdRGG~i 85 (235)
T PRK14343 12 ALPVTVRWRGREPYEACFDAMRAFTDARTAD-TPDEIWLVEHPPVYTLGQAGDPAHLLVA-----DSGIPLVKVDRGGQI 85 (235)
T ss_pred CCceEEEeCCCcCHHHHHHHHHHHHHHHhCC-CCCEEEEECCCCCeeCCCCCChhhccCC-----cCCCCEEEeCCCCce
Confidence 4568999999999999999999999887654 6799999999999999999999998754 348999999999999
Q ss_pred eEeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEec-----CCeEEEeceeeeccEEE
Q 027374 84 TFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVG-----DRKIGAIGVRIQYGITS 158 (224)
Q Consensus 84 TyHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~-----~rKIasiGv~i~~~vt~ 158 (224)
|||||||||+|||+||++++.++++|++.||+++|++|++|||++ .+.++++|||++ ++||||||+++++|||+
T Consensus 86 TyHGPGQLV~YpIl~L~~~~~~v~~yv~~lE~~vI~~l~~~gi~~-~~~~~~~GVwv~~~~~~~~KIaaIGv~v~r~vT~ 164 (235)
T PRK14343 86 TYHGPGQVVAYLLLDLRRRKLMVRELVTRIEQAVIDTLAAYNLAS-ERKAGAPGIYVASGPHQGAKIAALGLKIRNGCSY 164 (235)
T ss_pred eEeCCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCce-eecCCCCeEEEeCCCCCCCeEEEEeeeeecceee
Confidence 999999999999999999999999999999999999999999999 577899999998 89999999999999999
Q ss_pred eeeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccchHHHHHHHHhhhc
Q 027374 159 HGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEPLDSHKKNFIKISI 216 (224)
Q Consensus 159 HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~~~~~~~~f~~~~~ 216 (224)
||||||||+||++|+.|+|||++|..||||+ ++|.++++++|++. +.++|.+.|.
T Consensus 165 HG~ALNv~~DL~~F~~I~PCGl~~~~vTSL~-~lg~~~~~~~v~~~--l~~~f~~~f~ 219 (235)
T PRK14343 165 HGLSLNVKMDLRPFLAINPCGYAGLETVDMA-SLGVAADWADVAQT--LARRLIANLD 219 (235)
T ss_pred cccEEEeCCCchhhCcEECCCCCCCcEeeHH-HhCCCCCHHHHHHH--HHHHHHHHhC
Confidence 9999999999999999999999999999995 58999999999883 5555555553
No 6
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-71 Score=471.96 Aligned_cols=203 Identities=36% Similarity=0.664 Sum_probs=188.4
Q ss_pred ceeEEEEcCcccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCcee
Q 027374 5 RSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDIT 84 (224)
Q Consensus 5 ~~~~~~~lG~~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~iT 84 (224)
..+.++.+|+++|..+|+.|+++.+++.++..+|++|++|||||||.|++++.++++.+. ++||++++|||++|
T Consensus 9 ~~~~~~~~Gl~~Y~~a~~~m~~~~~~r~~~~~~d~i~lvEHppVyT~G~~~~~e~l~~~~------~ipVv~~~RGGqvT 82 (221)
T COG0321 9 KIILVRELGLVDYQEAWQLMETFTDARADGGTPDEIWLVEHPPVYTAGQAGKAEHLLMPD------DIPVVQTDRGGQVT 82 (221)
T ss_pred cchhhhhcCcccHHHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeecCccCCHhhcccCC------CCCEEEecCCceeE
Confidence 468889999999999999999999999888889999999999999999999999988643 89999999999999
Q ss_pred EeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEecC-CeEEEeceeeeccEEEeeeee
Q 027374 85 FHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGD-RKIGAIGVRIQYGITSHGLAF 163 (224)
Q Consensus 85 yHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~-rKIasiGv~i~~~vt~HG~aL 163 (224)
||||||+|+|||+||++++.++++||++||+++|++|++|||++ .++++.+||||++ +||||||+|+++|+|+||+||
T Consensus 83 yHGPGQ~V~Y~ildLkr~~~~vr~~V~~LEqavI~tLa~~~i~~-~~~~~~~GVwV~~~~KIAaiGirirr~vs~HGlAL 161 (221)
T COG0321 83 YHGPGQLVAYPILDLKRPKLDVREYVRALEQAVINTLAEYGIEA-ERRPDRPGVWVEEERKIAAIGIRIRRGVTFHGLAL 161 (221)
T ss_pred EeCCCcEEEEEEEecccccccHHHHHHHHHHHHHHHHHHcCCcc-cccCCCCeEEecCCceEEEEEEEEecccceeeeEE
Confidence 99999999999999999989999999999999999999999999 5889999999996 999999999999999999999
Q ss_pred eccCCccccccccCCCCCCCceeeehhhhCCCCCcccccchHHHHHHHHhhhcC
Q 027374 164 NIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEPLDSHKKNFIKISIK 217 (224)
Q Consensus 164 Nv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~~~~~~~~f~~~~~~ 217 (224)
||++||++|++|+|||+.|..||||++ ++..+++++|... +.++|.+.|-+
T Consensus 162 Nv~~DL~~F~~I~PCG~~~~~~tsl~d-~~~~v~~~~V~~~--l~~~~~~~l~~ 212 (221)
T COG0321 162 NVNMDLSPFNRIVPCGYAGMEVTSLSD-LGPPVTVDEVAKA--LVAAFAKLLGP 212 (221)
T ss_pred eccCCchhccceeccccCCCceeEHHH-hCCCCcHHHHHHH--HHHHHHHHhCC
Confidence 999999999999999999999999998 5767999999883 45555555544
No 7
>PRK14347 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=5.3e-71 Score=469.44 Aligned_cols=200 Identities=34% Similarity=0.520 Sum_probs=183.3
Q ss_pred eEEEEcCcccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCceeEe
Q 027374 7 LQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDITFH 86 (224)
Q Consensus 7 ~~~~~lG~~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~iTyH 86 (224)
..+.++|+++|++||++|+++++++.++..+|+||+||||||||+|++++.++++.+ .+++|++++|||++|||
T Consensus 3 ~~~~~~g~~~Y~~a~~~q~~~~~~~~~~~~~d~llllEH~pVyT~G~~~~~~~ll~~------~~i~v~~t~RGG~vTyH 76 (209)
T PRK14347 3 RFITIPDFADYQVTLKLMEDYVNKVISDHEPEIVYLVEHSEVYTAGTNYKQEELLNY------GDIPVIYTGRGGKFTFH 76 (209)
T ss_pred eEEecCCccCHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCeeCCCCCChhhcccc------cCCcEEEecCCcceEEe
Confidence 345889999999999999999999988888999999999999999999998887633 48999999999999999
Q ss_pred CCCceEEEEeeecCCC--CCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEec-----CCeEEEeceeeeccEEEe
Q 027374 87 GPHQAILYPIISLRDI--GLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVG-----DRKIGAIGVRIQYGITSH 159 (224)
Q Consensus 87 gPGQLV~Ypil~l~~~--~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~-----~rKIasiGv~i~~~vt~H 159 (224)
||||||+|||+||+++ +.++++|++.||+++|++|++|||++ .+.++++|||++ ++||||||+++++|+|+|
T Consensus 77 GPGQlV~YpIldL~~~~~~~~v~~yv~~lE~~ii~~l~~~gi~~-~~~~~~~GVWv~~~~~~~~KIaaiGv~v~r~vT~H 155 (209)
T PRK14347 77 GPGQRVIYPILNLASPNRHKDLKLYIKMLEEWIINSLNYFGIKA-YIIKDKVGIWVKVRKDEFAKIAAIGVRVRKWVTYH 155 (209)
T ss_pred CCCcEEEEEEEeccccccCCCHHHHHHHHHHHHHHHHHHcCCce-EEcCCCCEEEEcCCCCCCceEEEEeEEEecceeec
Confidence 9999999999999864 46999999999999999999999999 477899999997 589999999999999999
Q ss_pred eeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccchHHHHHHHHhhhc
Q 027374 160 GLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEPLDSHKKNFIKISI 216 (224)
Q Consensus 160 G~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~~~~~~~~f~~~~~ 216 (224)
|+|||||+||++|+.|+||||+|..||||++ +|.+++++++++. +.++|.+.|+
T Consensus 156 G~AlNv~~dL~~F~~IvPCGl~~~~vTSl~~-~g~~~~~~~v~~~--l~~~f~~~f~ 209 (209)
T PRK14347 156 GVAINISTDLSKFSGIIPCGLENSLVTSLNQ-LGIHVEMSEFDKI--IQTEFNKIFK 209 (209)
T ss_pred ceEEEeCCCccccCcEECCCCCCCcEeeHHH-hCCCCCHHHHHHH--HHHHHHHHhC
Confidence 9999999999999999999999999999986 7999999999883 5666666653
No 8
>PRK14344 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=6e-71 Score=472.84 Aligned_cols=203 Identities=30% Similarity=0.490 Sum_probs=185.9
Q ss_pred eeEEEEcCcccHHHHHHHHHHHHHHHhcC-CCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCcee
Q 027374 6 SLQIWRLGIVNYSDALKLQEKLVSDRKIH-KISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDIT 84 (224)
Q Consensus 6 ~~~~~~lG~~~y~~~~~~q~~~~~~~~~~-~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~iT 84 (224)
.+.+.++|+++|++||++|+++++++.++ ..+|+||+||||||||+|++++.++++.+. +..+++|++++|||++|
T Consensus 18 ~~~~~~lg~v~Y~~a~~~Q~~~~~~~~~~~~~~d~llllEH~pVyT~G~~~~~~~l~~~~---~~~~~~v~~~~RGG~iT 94 (223)
T PRK14344 18 AILFEPDNIVPFEDAWKWQKEWQQALIEDPSNPQAVWLLEHQLCYTLGRGASEDNLLFSL---NNPPADVFRIDRGGEVT 94 (223)
T ss_pred eEEEecCCccCHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCeeCCCCCChhhccCcc---ccCCCcEEEcCCCceee
Confidence 47788899999999999999999877553 457999999999999999999999987542 24589999999999999
Q ss_pred EeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEeceeeeccEEEeeeeee
Q 027374 85 FHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFN 164 (224)
Q Consensus 85 yHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~i~~~vt~HG~aLN 164 (224)
||||||||+|||+||++++.++++|++.||+++|++|++|||++ .+.++.+|||++++||||||+++++|+|+||+|||
T Consensus 95 yHGPGQLV~YpIl~L~~~~~~v~~yv~~lE~~ii~~l~~~gi~~-~~~~~~~GVWv~~~KIaaIGv~v~r~vT~HG~ALN 173 (223)
T PRK14344 95 HHMPGQLVTYLVLDLRRFNKDLNWYLRQLEQVLIDVLADLGIDG-ERLDGLTGVWIGNKKVASIGIGCRRWITQHGFSLN 173 (223)
T ss_pred EECCCcEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCce-eecCCCCcEEcCCCeEEEEeEeEecceeecceEEe
Confidence 99999999999999999999999999999999999999999999 47789999999999999999999999999999999
Q ss_pred ccCCccccccccCCCCCCCceeeehhhhCCCCCcccccchHHHHHHHHhhh
Q 027374 165 IDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEPLDSHKKNFIKIS 215 (224)
Q Consensus 165 v~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~~~~~~~~f~~~~ 215 (224)
|++||++|+.|+||||+|..||||++ ++.+++++++++. +.++|.+.|
T Consensus 174 v~~dL~~F~~IvPCGl~~~~vTSl~~-~~~~~~~~~v~~~--l~~~f~~~f 221 (223)
T PRK14344 174 VDCDLEGFNKIVPCGLEGCQVGRLSD-WIPGLNIKEVKPL--LKKSLQERF 221 (223)
T ss_pred cCCCccccCcEEcCCCCCCcEeeHHH-HcCCCCHHHHHHH--HHHHHHHHh
Confidence 99999999999999999999999986 5789999999883 566666666
No 9
>PRK14346 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=1.9e-70 Score=470.94 Aligned_cols=199 Identities=29% Similarity=0.529 Sum_probs=183.4
Q ss_pred eeEEEEcCcccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCceeE
Q 027374 6 SLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDITF 85 (224)
Q Consensus 6 ~~~~~~lG~~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~iTy 85 (224)
++.++++|+++|.++|++|+++++.+.+ ..+|+|||||||||||+|++++.++++.+ .++||++++|||++||
T Consensus 2 ~~~~~~lG~v~Y~~a~~~q~~~~~~~~~-~~~d~llllEHppVyT~G~~~~~~~ll~~------~~i~v~~tdRGG~iTy 74 (230)
T PRK14346 2 AMDRRMLGRVDYLATVQAMQAFTAERTP-ETPDELWICEHPPVYTQGLAGKADHVLNP------GDIPVVATNRGGQVTY 74 (230)
T ss_pred eEEEEeCCCcCHHHHHHHHHHHHHHhhC-CCCCEEEEEcCCCCeeCCCCCChhhccCC------CCCcEEEeCCCcceeE
Confidence 4678999999999999999999888754 46899999999999999999999988743 3899999999999999
Q ss_pred eCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEec------------------------
Q 027374 86 HGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVG------------------------ 141 (224)
Q Consensus 86 HgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~------------------------ 141 (224)
|||||||+|||+||++++.++++|++.||+++|++|++|||++ .+.++++||||+
T Consensus 75 HGPGQlV~YpildL~~~~~~vr~yv~~lE~~vI~~l~~~gi~~-~~~~~~~GVWv~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (230)
T PRK14346 75 HGPGQVVAYPLIDLRRAGYFVKEYVYRIEEAVIRTLAHFGVTG-HRVAGAPGIYVRLDDPFSHAALPQRPQKRGGGAPQP 153 (230)
T ss_pred ECCCeEEEEEEEeccccCCCHHHHHHHHHHHHHHHHHHhCCce-EEcCCCCEEEEcCCCccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999 577899999996
Q ss_pred ----CCeEEEeceeeeccEEEeeeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccchHHHHHHHHhhh
Q 027374 142 ----DRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEPLDSHKKNFIKIS 215 (224)
Q Consensus 142 ----~rKIasiGv~i~~~vt~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~~~~~~~~f~~~~ 215 (224)
++||||||+++++|||+||+||||++||++|+.|+||||+|..||||+ ++|.+++++++++. +.++|.+.|
T Consensus 154 ~~~~~~KIaAiGv~v~r~vT~HG~ALNv~~DL~~F~~IvPCGl~~~~vTSL~-~lg~~~~~~~v~~~--l~~~f~~~~ 228 (230)
T PRK14346 154 PFRGLGKIAALGIKVSRHCTYHGVALNVAMDLEPFSRINPCGYAGLQTVDLS-TIGVQTTWDEAASV--LGQQLARYL 228 (230)
T ss_pred cccccceEEEEeeEEecceeecceeEEcCCChhhhCcEECCCCCCCceeeHH-HhCCCCCHHHHHHH--HHHHHHHHh
Confidence 269999999999999999999999999999999999999999999997 58999999999884 566666655
No 10
>PRK14349 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=2.7e-70 Score=467.29 Aligned_cols=200 Identities=30% Similarity=0.460 Sum_probs=182.2
Q ss_pred EEEcCc-ccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCceeEeC
Q 027374 9 IWRLGI-VNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDITFHG 87 (224)
Q Consensus 9 ~~~lG~-~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~iTyHg 87 (224)
++.+|. ++|++||++|+++++++.++ .+|+|||||||||||+|++++.++++.+ .+++|++++|||++||||
T Consensus 2 ~~~~~~~~~Y~~a~~~q~~~~~~~~~~-~~d~llllEH~pVyT~G~~~~~~~ll~~------~~i~vv~t~RGG~iTyHG 74 (220)
T PRK14349 2 IKWLARPADYASVWDAMKAFTAARGPG-TADEIWLCEHAPVYTLGQAGRPEHLLNP------GLIPVVHCDRGGQVTYHG 74 (220)
T ss_pred eeeccCccCHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCCeeCCCCCChhhccCC------CCCcEEEecCCcceEEeC
Confidence 345666 99999999999999987655 5799999999999999999999988743 379999999999999999
Q ss_pred CCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCc-CCCCCCCCCeEEec-----CCeEEEeceeeeccEEEeee
Q 027374 88 PHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVK-ACPGQKGETGIWVG-----DRKIGAIGVRIQYGITSHGL 161 (224)
Q Consensus 88 PGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~-a~~~~~~~~GVwv~-----~rKIasiGv~i~~~vt~HG~ 161 (224)
|||||+|||+||++++.++++|++.||+++|++|++|||+ | .+.++++|||++ ++||||||+++++|||+||+
T Consensus 75 PGQLV~YpIldL~~~~~~vr~yv~~LE~~~I~~l~~~gi~~a-~~~~~~~GVWv~~~~~~~~KIaaiGv~v~r~vT~HG~ 153 (220)
T PRK14349 75 PGQVLAYTLFDLRRAGLYVREYVDMLEQATLATLRELGLEQA-CRKPGAPGIYVPQPGGELAKIAALGVKVRNGYAYHGL 153 (220)
T ss_pred CCcEEEEEEEEcccCCCCHHHHHHHHHHHHHHHHHHhCCcce-eecCCCCcEEeCCCCCCCceEEEEeeEEecceeecce
Confidence 9999999999999999999999999999999999999999 8 577899999998 48999999999999999999
Q ss_pred eeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccchHHHHHHHHhhhcCCC
Q 027374 162 AFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEPLDSHKKNFIKISIKPQ 219 (224)
Q Consensus 162 aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~~~~~~~~f~~~~~~~~ 219 (224)
|||||+||++|+.|+||||+|..||||++ +|.+++++++++ .+.++|.+.|..+.
T Consensus 154 ALNv~~DL~~F~~IvPCGl~~~~vTSl~~-~g~~~~~~~v~~--~l~~~f~~~f~~~~ 208 (220)
T PRK14349 154 ALNIDMDLSPFLGINPCGYEGLRTVDLAA-CGVRTSVERAGE--LLAAQLARAHGQAV 208 (220)
T ss_pred eEEecCCchhhCcEEcCCCCCCcEeeHHH-hCCCCCHHHHHH--HHHHHHHHHhCccc
Confidence 99999999999999999999999999975 899999999988 36777777776543
No 11
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=100.00 E-value=2.6e-65 Score=427.81 Aligned_cols=176 Identities=33% Similarity=0.588 Sum_probs=159.0
Q ss_pred cCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCceeEeCCCceEEEEeeecCCCCCCHHHHHHH
Q 027374 33 IHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEK 112 (224)
Q Consensus 33 ~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~iTyHgPGQLV~Ypil~l~~~~~~~~~yv~~ 112 (224)
++..+|+||+||||||||+|++++.++++.+. +..++++++++|||++|||||||||+|||+||++++.++++|++.
T Consensus 8 ~~~~~d~llllEH~pVyT~G~~~~~~~l~~~~---~~~~~~v~~~~RGG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~ 84 (184)
T TIGR00214 8 DRQTLDEIMLVEHYPVYTQGQAGKTEHLLFDP---DIPPAEVVQSERGGQVTYHGPGQQVMYVILDLKRFQLDVRWLVTQ 84 (184)
T ss_pred cCCCCCEEEEECCCCCeeCCCCCChhhccCCc---CCCcceEEEeCCCCeeEEECCCeEEEEEEEEchhcCCCHHHHHHH
Confidence 34578999999999999999999999987532 112556999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEeceeeeccEEEeeeeeeccCCccccccccCCCCCCCceeeehhhh
Q 027374 113 LESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRET 192 (224)
Q Consensus 113 Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~i~~~vt~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~l 192 (224)
||+++|++|++|||+| .+.++++|||++++||||||+++++|+|+|||||||++||++|+.|+||||+|.+||||++ +
T Consensus 85 lE~~~I~~l~~~gi~a-~~~~~~~GVWv~~~KIasIGv~v~r~vt~HG~ALNv~~dL~~F~~I~PCGl~~~~vTSl~~-~ 162 (184)
T TIGR00214 85 LEQTVIITLAELGIEG-EPIADATGVWVEGKKVASLGIRVRRGCTFHGLALNINMDLSPFSHINPCGYAGREMGSLNQ-F 162 (184)
T ss_pred HHHHHHHHHHHcCCce-EEcCCCCeEEecCCEEEEEEEEEeccEeecceEEEcCCCchHhccEEcCCCCCCcEeeHHH-H
Confidence 9999999999999999 4778999999999999999999999999999999999999999999999999999999986 6
Q ss_pred CCCCCcccccchHHHHHHHHhhh
Q 027374 193 GAVRIFNTLEPLDSHKKNFIKIS 215 (224)
Q Consensus 193 g~~~~~~~v~~~~~~~~~f~~~~ 215 (224)
+.++++++|++ .+.++|.+.|
T Consensus 163 ~~~~~~~~v~~--~~~~~f~~~f 183 (184)
T TIGR00214 163 LPGATVENVAP--LLIKAFAELL 183 (184)
T ss_pred cCCCCHHHHHH--HHHHHHHHHh
Confidence 78889988888 3566666554
No 12
>KOG0325 consensus Lipoyltransferase [Energy production and conversion; Coenzyme transport and metabolism]
Probab=100.00 E-value=5e-55 Score=368.51 Aligned_cols=210 Identities=44% Similarity=0.716 Sum_probs=185.9
Q ss_pred CCCCceeEEEEcCcccHHHHHHHHHHHHHHH-----hcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEE
Q 027374 1 MKVPRSLQIWRLGIVNYSDALKLQEKLVSDR-----KIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELH 75 (224)
Q Consensus 1 ~~~~~~~~~~~lG~~~y~~~~~~q~~~~~~~-----~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~ 75 (224)
|-....+.++..|+++|.+..++|+++++.. .+....+++++.||+||||+|.+.... ...++.++.+.|.+++
T Consensus 1 ~~~~~~~~~~r~g~~~y~~~~~lq~rlvr~~~~~~~s~~~~~p~il~~eh~PvYT~G~rt~~~-~~~~e~~l~~~ga~~~ 79 (226)
T KOG0325|consen 1 MRLPIGVETVRAGLVHYHRTLALQNRLVRSVKILKKSGTHPIPRILTNEHLPVYTYGCRTLDF-TLYDESRLYKLGAEFH 79 (226)
T ss_pred CcccceEEEEEcccchHHhhhHHHHHHHHHhhhcccccCCCCCEEeecccCCeeeeccccCCc-ccchhhhhhhcCceEE
Confidence 4455678899999999999999999999987 334567899999999999999665433 3445678999999999
Q ss_pred EEecCCceeEeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEeceeeecc
Q 027374 76 YTQRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYG 155 (224)
Q Consensus 76 ~~~RGG~iTyHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~i~~~ 155 (224)
++.|||++|||||||+++|||+||+.++++.++||..|| +++..+||++. ...+++||||+++|||+||++++++
T Consensus 80 ~t~RGG~iTfHGPgQl~~ypIidL~~f~~~~r~~Vs~le----~~c~~~~i~~~-~~t~~tgvwV~d~k~aaiGi~vsr~ 154 (226)
T KOG0325|consen 80 KTERGGLITFHGPGQLVAYPIIDLRHFGFSARCYVSTLE----AACPDFGIKGT-ASTKDTGVWVGDAKIAAIGIRVSRE 154 (226)
T ss_pred EeecCceEEEeCCCceEEEEEEEeeccccchhhHHHHHH----hhccccccccc-ccccccceeecCCeeEEEEEEecCc
Confidence 999999999999999999999999999999999999999 57788999984 4456999999999999999999999
Q ss_pred EEEeeeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccc--hHHHHHHHHhhhc
Q 027374 156 ITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEP--LDSHKKNFIKISI 216 (224)
Q Consensus 156 vt~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~--~~~~~~~f~~~~~ 216 (224)
|||||+|||+++||+||+.|+|||+.++.+||+++|.++.++..++.+ +.+|.+.|.-.+.
T Consensus 155 IT~HGlaLN~~tDL~~fnhiv~CGi~~~~vtSi~~e~~~~~~~~~~~~~~l~~l~k~f~~~~~ 217 (226)
T KOG0325|consen 155 ITYHGLALNVNTDLTYFNHIVPCGIYGRGVTSISKEIRRLVTVEESVAIRLVSLTKVFSCMLQ 217 (226)
T ss_pred EeecceEEEeccCcchhhccccceeeccccceehhhhccccchhHhHHHHHHHHHHhhhhhee
Confidence 999999999999999999999999999999999999999999888888 3677777765554
No 13
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=99.84 E-value=5.2e-20 Score=166.82 Aligned_cols=188 Identities=20% Similarity=0.162 Sum_probs=144.5
Q ss_pred EEEcCcccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCceeEeCC
Q 027374 9 IWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDITFHGP 88 (224)
Q Consensus 9 ~~~lG~~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~iTyHgP 88 (224)
+++.+..+-...+++.+.+.+....+..+++|+|.+++|++.+|++|+....+. .+.|++.||+++|+.+||++.||++
T Consensus 3 ~i~~~~~d~~~nlA~ee~Ll~~~~~~~~~~~l~~w~~~p~vviG~~Q~~~~ev~-~~~~~~~gi~vvRR~sGGGaVyhD~ 81 (324)
T TIGR00545 3 ILTSPSNDPYFNLALEEYLFKEFPKTQRGKVLLFWQNANTIVIGRNQNTWAEVN-LKELEEDNVNLFRRFSGGGAVFHDL 81 (324)
T ss_pred EEeCCCCCHHHHHHHHHHHHHccccCCCCcEEEEEcCCCeEEECCCCCHHHHhC-HHHHHHcCCeEEEECCCCceEEEcC
Confidence 344455566678889998988776666667999999999999999998765553 5789999999999999999999999
Q ss_pred CceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEeceeeeccEEEeeeeeeccCC
Q 027374 89 HQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPD 168 (224)
Q Consensus 89 GQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~i~~~vt~HG~aLNv~~d 168 (224)
|++..-.|.+-. +.....| +.+.+.++++|+.+||++.. .+.+++.++||||++.+.+..++..+|..+|-++.|
T Consensus 82 g~l~~s~i~~~~--~~~~~~~-~~~~~~i~~aL~~lGi~a~~--~~rnDl~v~gkKisGsAq~~~~~~~l~HGtlL~~~d 156 (324)
T TIGR00545 82 GNICFSFITPKD--GKEFENA-KIFTRNVIKALNSLGVEAEL--SGRNDLVVDGRKISGSAYYITKDRGFHHGTLLFDAD 156 (324)
T ss_pred CceEEEEEEcCC--ccchhhH-HHHHHHHHHHHHHhCCCeEE--CCCceEEECCEEEEEEeeeeeCCEEEEEEEEEccCC
Confidence 998555555542 2234456 88999999999999999953 478999999999999999887765554446779999
Q ss_pred ccccc-cccC-------CCCCC--CceeeehhhhCCCCCcccccc
Q 027374 169 LNYFK-HIVP-------CGIAD--KDVTSLRRETGAVRIFNTLEP 203 (224)
Q Consensus 169 l~~f~-~I~p-------CGl~~--~~vTSL~~~lg~~~~~~~v~~ 203 (224)
++.+. .+.| -|++. .+||+|.+.++. ++++++.+
T Consensus 157 ~~~l~~~L~~~~~k~~skgv~sv~~rv~nl~~~l~~-~~~e~~~~ 200 (324)
T TIGR00545 157 LSKLAKYLNVDKTKIESKGITSVRSRVVNVKEYLPN-ITTEQFLE 200 (324)
T ss_pred HHHHHHhcCCChhhhHhhcccchhhhcccHHHhCCC-CCHHHHHH
Confidence 87542 2222 34433 588888887664 67777776
No 14
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=99.83 E-value=1.1e-19 Score=165.42 Aligned_cols=204 Identities=14% Similarity=0.140 Sum_probs=147.6
Q ss_pred ceeEEEEcCcccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCcee
Q 027374 5 RSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDIT 84 (224)
Q Consensus 5 ~~~~~~~lG~~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~iT 84 (224)
+.++++..+..+-...+++.+.+.+....+ +++|++-+.+|++.+|++|+....+ +.+.|++.||+|+|+.+||++.
T Consensus 2 ~~~~~i~s~~~dp~~NlAlEe~Ll~~~~~~--~~~l~~w~n~p~VvIGr~Qn~~~Ev-n~~~~~~~gI~vvRR~SGGGAV 78 (338)
T PRK03822 2 STLRLLISDSYDPWFNLAVEECIFRQMPAT--QRVLFLWRNADTVVIGRAQNPWKEC-NTRRMEEDNVRLARRSSGGGAV 78 (338)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHhcCCCC--CCEEEEEcCCCeEEECCCCCHHHHh-CHHHHHHcCCcEEEECCCCceE
Confidence 456677666677777888888887765433 4577777888999999999987665 3589999999999999999999
Q ss_pred EeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEec----CCeEEEeceeeeccEEEee
Q 027374 85 FHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVG----DRKIGAIGVRIQYGITSHG 160 (224)
Q Consensus 85 yHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~----~rKIasiGv~i~~~vt~HG 160 (224)
||++|++-...|.+-. ..+. ....+.++++|+.+||+|. . .+.++++++ +|||++-+.+..++..+|.
T Consensus 79 yhD~Gnl~~s~i~~~~--~~~~----~~~~~~ii~aL~~lGi~a~-~-~~rnDi~v~~~~g~kKisGsAq~~~~~~~l~H 150 (338)
T PRK03822 79 FHDLGNTCFTFMAGKP--EYDK----TISTSIVLNALNSLGVSAE-A-SGRNDLVVKTAEGDRKVSGSAYRETKDRGFHH 150 (338)
T ss_pred EEcCCCcEEEEEeCCC--ccCH----HHHHHHHHHHHHHcCCcee-E-CCCccEEEecCCCCcEEEEEeeeeeCCeEEEE
Confidence 9999998444444322 2221 2246799999999999995 3 589999995 6999999888776655555
Q ss_pred eeeeccCCccccc-cc-------cCCCCCC--CceeeehhhhCCCCCcccccc-h-HHHHHHHHhhhcCCCC
Q 027374 161 LAFNIDPDLNYFK-HI-------VPCGIAD--KDVTSLRRETGAVRIFNTLEP-L-DSHKKNFIKISIKPQL 220 (224)
Q Consensus 161 ~aLNv~~dl~~f~-~I-------~pCGl~~--~~vTSL~~~lg~~~~~~~v~~-~-~~~~~~f~~~~~~~~l 220 (224)
-+|-+++|++.+. .+ ..-|++. .+||+|.+.++ .++++++++ + .+|++.|...+....|
T Consensus 151 GTlL~~~d~~~l~~~L~~~~~k~~skgv~Sv~srVtnl~~~~~-~~~~e~~~~~l~~~f~~~~~~~~~~~~l 221 (338)
T PRK03822 151 GTLLLNADLSRLANYLNPDKKKLQAKGITSVRSRVTNLTELLP-GITHEQVCEAITEAFFAHYGERVEAEVI 221 (338)
T ss_pred EEEEecCCHHHHHHHhCCChhhhhhccccchHhhhccHHHhCC-CCCHHHHHHHHHHHHHHHhCCCCCcccc
Confidence 5677999987542 22 2334544 58888988665 478888887 2 5566555433333333
No 15
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional
Probab=99.78 E-value=4.9e-18 Score=162.64 Aligned_cols=205 Identities=15% Similarity=0.144 Sum_probs=148.2
Q ss_pred CceeEEEEcCcccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCce
Q 027374 4 PRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDI 83 (224)
Q Consensus 4 ~~~~~~~~lG~~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~i 83 (224)
|+.++++.....+-.-.+++.+.+.+... ...+.+++-+.+|++.+||+|+....++ .++|++.||+|+|+.+|||+
T Consensus 225 m~~m~~i~s~s~dp~~NLAlEE~Ll~~~~--~~~~~l~lW~n~ptVvIGrnQN~~~EVN-l~~~~~~gI~vVRR~SGGGA 301 (562)
T PRK14061 225 MSTLRLLISDSYDPWFNLAVEECIFRQMP--ATQRVLFLWRNADTVVIGRAQNPWKECN-TRRMEEDNVRLARRSSGGGA 301 (562)
T ss_pred cccEEEEEcCCCCHHHHHHHHHHHHhcCC--CCCCEEEEEcCCCEEEECCCCCchhhhC-HHHHHhcCCcEEEECCCCcE
Confidence 35677887776777778888888876532 2235666678889999999999987664 58999999999999999999
Q ss_pred eEeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEe----cCCeEEEeceeeeccEEEe
Q 027374 84 TFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWV----GDRKIGAIGVRIQYGITSH 159 (224)
Q Consensus 84 TyHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv----~~rKIasiGv~i~~~vt~H 159 (224)
.||++|.+-.-.|.+-. ..+. ....+.++++|+.+||+|. . .+.+++.+ +||||++....+.++..+|
T Consensus 302 VYHD~GNlnfSfi~~~~--~~~~----~~~~~~Ii~aL~~LGI~ae-~-sgRNDI~v~~~~~GkKISGsAq~~~~~~~lh 373 (562)
T PRK14061 302 VFHDLGNTCFTFMAGKP--EYDK----TISTSIVLNALNALGVSAE-A-SGRNDLVVKTAEGDRKVSGSAYRETKDRGFH 373 (562)
T ss_pred EEEcCCceEEEEEeCCc--ccch----HHHHHHHHHHHHHcCCCeE-E-CCCccEEEeeCCCCcEEEEEeEEEeCCeEEE
Confidence 99999997444444321 2222 2335899999999999995 3 58999999 6899999998887766665
Q ss_pred eeeeeccCCcccc-ccc-------cCCCCCC--CceeeehhhhCCCCCcccccc-h-HHHHHHHHhhhcCCCC
Q 027374 160 GLAFNIDPDLNYF-KHI-------VPCGIAD--KDVTSLRRETGAVRIFNTLEP-L-DSHKKNFIKISIKPQL 220 (224)
Q Consensus 160 G~aLNv~~dl~~f-~~I-------~pCGl~~--~~vTSL~~~lg~~~~~~~v~~-~-~~~~~~f~~~~~~~~l 220 (224)
.-+|-++.|++.. +.+ ..-|.+. .+||+|++.++ .++++++++ + .+|++.|+..+....|
T Consensus 374 HGTLL~d~dl~~L~~~L~~~~~Kl~sKgvkSVrsRVtNL~e~l~-~it~e~f~~~L~~~f~~~~g~~~~~~~L 445 (562)
T PRK14061 374 HGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLP-GIPHEQVCEAITEAFFAHYGERVEAEII 445 (562)
T ss_pred EEEEEecCCHHHHHHHhCCCchhhhhhhhhhHHhhceeHHHhCC-CCCHHHHHHHHHHHHHHHcCCCCccccC
Confidence 5578899998754 222 2234433 58899988766 467888877 2 4555555433333333
No 16
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]
Probab=99.77 E-value=1.5e-17 Score=145.52 Aligned_cols=197 Identities=22% Similarity=0.201 Sum_probs=146.2
Q ss_pred eEEEEcCccc--HHHHHHHHHHHHHHHhcCCCCCeEEEEe-CCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCce
Q 027374 7 LQIWRLGIVN--YSDALKLQEKLVSDRKIHKISDTLLSLQ-HPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDI 83 (224)
Q Consensus 7 ~~~~~lG~~~--y~~~~~~q~~~~~~~~~~~~~~~lll~e-H~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~i 83 (224)
+++.+.+..+ -...+++++.+.....++. ++++.. ++|++.+|++++....+ +.+.+++.|++|+|+.+||++
T Consensus 2 ~~~~~~~~~~~~~~~n~A~de~ll~~~~~~~---~i~~~~~~~~~v~lG~~q~~~~Ev-~~~~~~~~~i~vvRR~sGGGa 77 (248)
T COG0095 2 WRIIDLGIRDFDPAFNLALDEALLRSLSEGG---TLRLYWWNPPTVVLGRFQNTLPEV-NLEYVKEDGIPVVRRPSGGGA 77 (248)
T ss_pred eeEEeccccCCCHHHHHHHHHHHHHhCCCCC---eEEEEEECCCeEEECCccchHhHh-hHHHHHHcCCcEEEEcCCCce
Confidence 4566666644 6777888898887765443 677775 77899999999887644 457899999999999999999
Q ss_pred eEeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCc-CCCCCCCCCeEEecCCeEEEeceeeec-cEEEeee
Q 027374 84 TFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVK-ACPGQKGETGIWVGDRKIGAIGVRIQY-GITSHGL 161 (224)
Q Consensus 84 TyHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~-a~~~~~~~~GVwv~~rKIasiGv~i~~-~vt~HG~ 161 (224)
.||++|++-.-.|++-.....+.....+.+.+.+++++..+|++ +. .++.++|-++||||++.+.+..+ .+-.||
T Consensus 78 V~hd~g~l~~S~i~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~--~~~~nDl~v~gkKisG~Aq~~~~~~~l~hg- 154 (248)
T COG0095 78 VFHDLGNLNYSVITPDEGGLESYETLYKFLLQPVIDALRALGVEGAE--CPGRNDLVVDGKKISGSAQRRTKGRILHHG- 154 (248)
T ss_pred EEecCCcEEEEEEECCCCccccHHHHHHHHHHHHHHHHHHcCCCeec--cCCCcceeEcCcEEeeHHHHhhCCcEEEEE-
Confidence 99999977555555555444567778889999999999999999 62 46899999999999999988655 566666
Q ss_pred eeeccCCcccccc-c-------cCCCCCC--CceeeehhhhCCCCCcccccch--HHHHHHHH
Q 027374 162 AFNIDPDLNYFKH-I-------VPCGIAD--KDVTSLRRETGAVRIFNTLEPL--DSHKKNFI 212 (224)
Q Consensus 162 aLNv~~dl~~f~~-I-------~pCGl~~--~~vTSL~~~lg~~~~~~~v~~~--~~~~~~f~ 212 (224)
+|-++.|++-+.. + ..-|... .+|++|+++ .+++++++.++ ..|++.+.
T Consensus 155 tll~~~d~~~l~~~l~~~~~k~~~k~~~s~~~rv~~l~~~--~~~~~~e~~~~l~~~f~~~~~ 215 (248)
T COG0095 155 TLLLDIDLELLARVLRVPKEKIKSKGIKSVRERVANLEEL--LKISVEEFLEALLEAFFKVLG 215 (248)
T ss_pred EEEEeCCHHHHHHHhCCChhhhhhcccccHHHhCcchhhc--cCCCHHHHHHHHHHHHHHhhC
Confidence 5668888765432 2 1233333 467777764 77888888872 45555444
No 17
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organism probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine []. Lipoate-protein ligase A (LPLA) (octanoyltransferase) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes [].; GO: 0003824 catalytic activity, 0006464 protein modification process; PDB: 2ARU_A 2C8M_B 2C7I_A 3R07_A 2ARS_A 2ART_A 3FJP_A 3EFR_B 2EAY_B 3EFS_B ....
Probab=99.58 E-value=7.1e-15 Score=113.98 Aligned_cols=115 Identities=21% Similarity=0.269 Sum_probs=90.5
Q ss_pred ccCCCCCC-CCCccHHHHhhcCCeEEEEecCCceeEeCCCceEEEEeeecCCC----CCCHHHHHHHHHHHHHHHHHh--
Q 027374 51 LGKRRTDH-NLLISEAELKKLGAELHYTQRGGDITFHGPHQAILYPIISLRDI----GLGARNYVEKLESTMIEIASL-- 123 (224)
Q Consensus 51 ~Gr~~~~~-~~l~~~~~l~~~gi~v~~~~RGG~iTyHgPGQLV~Ypil~l~~~----~~~~~~yv~~Le~~vi~~l~~-- 123 (224)
+|++++.. .. .+.+.+++.+++++++.|||+.+||+|++.+.|.++-.... ...+..|+..+..++++.|..
T Consensus 1 ~g~~~~st~~~-~~~~~~~~~~v~v~~rqtgG~~~w~~p~g~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (125)
T PF03099_consen 1 IGYFQDSTKEE-LNQEELKEGGVPVARRQTGGRRVWHSPPGNLYFSLILPPDDPNFPPSDIPSYILLAALAVLEALGEFG 79 (125)
T ss_dssp EETTBSHHHHH-HHHHHHHCTTEEEEEESSSSBEEEEBTTTEEEEEEEEETTTTTHHGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCeECHHHHH-HHHhcCccCCEEEEEEeeCCcceeeeCCcEEEEEEEEccccccccchhhhHHHHHHHHHHHHHhhhhc
Confidence 35566553 22 24578999999999999999999999888888888755332 246778888887888887743
Q ss_pred ---cCCcCCCCCCCCCeEEecCCeEEEeceeeeccEEEeeeeeeccCC
Q 027374 124 ---YGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNIDPD 168 (224)
Q Consensus 124 ---~gi~a~~~~~~~~GVwv~~rKIasiGv~i~~~vt~HG~aLNv~~d 168 (224)
.|+... .+.+++|++++||||+++++..++..+|++++|++.|
T Consensus 80 ~~~~~~~~~--~kw~nDi~~~~kKi~Gil~~~~~~~~~~~~~igig~N 125 (125)
T PF03099_consen 80 PGEPGIDCF--IKWPNDIYVNGKKIAGILQERRRGGILHHGSIGIGIN 125 (125)
T ss_dssp HTTTTSSEE--EETTTEEEETTEEEEEEEEEEETTEEEEEEEEESSEE
T ss_pred cccCCCceE--EeCCCCccCCCcEEEEEeEeeeCCcEEEEEEEEEecC
Confidence 356552 3489999999999999999999999999999999865
No 18
>PRK08330 biotin--protein ligase; Provisional
Probab=99.53 E-value=9.4e-14 Score=120.51 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=94.9
Q ss_pred cCCceeEeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEeceeeeccEEE
Q 027374 79 RGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITS 158 (224)
Q Consensus 79 RGG~iTyHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~i~~~vt~ 158 (224)
|.|...+.-||+|..+.+++.......+..+.-...-+++++|+.+|+++. .+.+||||+++||||+|.+....+...
T Consensus 42 R~gr~W~Sp~G~l~~S~~l~~~~~~~~~~~l~~~~~~av~~~l~~~g~~~~--iKWPNDI~~~~kKi~GILiE~~~~~~v 119 (236)
T PRK08330 42 RKGRAWASPEGGLWMSVILKPKVSPEHLPKLVFLGALAVVDTLREFGIEGK--IKWPNDVLVNYKKIAGVLVEGKGDFVV 119 (236)
T ss_pred CCCCeeeCCCCCeEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcc--ccCCCeEEECCeEEEEEeEEEeCCEEE
Confidence 667777888999988888865433334455666677889999999999873 568999999999999999998888999
Q ss_pred eeeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccc
Q 027374 159 HGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEP 203 (224)
Q Consensus 159 HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~ 203 (224)
||+.|||+++ .||++.+ .+|||++++|.+++.+++..
T Consensus 120 iGiGiNv~~~-------~p~~l~~-~atsL~~~~~~~~~~~~l~~ 156 (236)
T PRK08330 120 LGIGLNVNNE-------IPDELRE-TATSMKEVLGREVPLIEVFK 156 (236)
T ss_pred EEEEEecCCC-------CCccccc-ccccHHHhhCCCCCHHHHHH
Confidence 9999999975 3999875 69999988899888877766
No 19
>KOG3159 consensus Lipoate-protein ligase A [Coenzyme transport and metabolism]
Probab=98.93 E-value=1.6e-08 Score=90.17 Aligned_cols=172 Identities=18% Similarity=0.208 Sum_probs=118.9
Q ss_pred eEEEEcCcccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCceeEe
Q 027374 7 LQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDITFH 86 (224)
Q Consensus 7 ~~~~~lG~~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~iTyH 86 (224)
..+..+.--+|. .+++-+-+. ....+.....|||....|++-+||+|++-... +-..|++.+|++.|+..|||..||
T Consensus 11 ~V~~s~S~~~y~-NLAlE~~l~-~~~~~~~~~~Ll~w~N~p~vVIGRhQNpw~E~-nv~~~~e~~I~liRR~SGGGTVyH 87 (336)
T KOG3159|consen 11 FVLQSLSSDPYY-NLALENYLY-RHKNGPDKHILLLWINDPCVVIGRHQNPWQEA-NVALLRENNIPLIRRFSGGGTVYH 87 (336)
T ss_pred eEEEEecCchhh-hhHHHHHHH-hhccCCCCeEEEEEeCCceEEEccCCCcceec-cHHHHHhcCCeEEEEecCCceEEE
Confidence 344444444443 344444443 33445556678888999999999999886544 357899999999999999999999
Q ss_pred CCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHH--hcCCcCCCCCCCCCeEEe--cCCeEEEeceeeeccEEEeeee
Q 027374 87 GPHQAILYPIISLRDIGLGARNYVEKLESTMIEIAS--LYGVKACPGQKGETGIWV--GDRKIGAIGVRIQYGITSHGLA 162 (224)
Q Consensus 87 gPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~--~~gi~a~~~~~~~~GVwv--~~rKIasiGv~i~~~vt~HG~a 162 (224)
+=|-|-...+-+-.++.. .+.. ..++++|. ++.+++... .+-++-+ ++|||++..-+|.++-.||=.+
T Consensus 88 DlGNLN~S~lt~re~~~r--~~nl----k~iv~ALn~~e~~v~v~~n--qR~Di~l~~g~rKiSGtA~kI~r~raYHH~T 159 (336)
T KOG3159|consen 88 DLGNLNYSLLTNREKFDR--KENL----KIIVRALNGDEPFVKVNLN--QRDDIVLDFGQRKISGTAYKIARNRAYHHCT 159 (336)
T ss_pred ecCceeEEEEccHHHcCc--ccch----HHHHHHhccCCceEeeccc--ccccceecccCceeccchhhhcCCceeeeEE
Confidence 999996555554444321 1111 23455555 777777422 3444444 4899999999999999999999
Q ss_pred eeccCCcccccccc---CCCCCCCceeeeh
Q 027374 163 FNIDPDLNYFKHIV---PCGIADKDVTSLR 189 (224)
Q Consensus 163 LNv~~dl~~f~~I~---pCGl~~~~vTSL~ 189 (224)
+-++.|++.+.... +-|+...+..|..
T Consensus 160 ~L~~aDl~~ls~lL~sp~~~~~s~at~sv~ 189 (336)
T KOG3159|consen 160 MLLNADLENLSELLKSPRVNIRSKATSSVR 189 (336)
T ss_pred eEeccchHHHHhhccCCCCCcccccccccc
Confidence 99999999886552 3566665555543
No 20
>PRK05935 biotin--protein ligase; Provisional
Probab=98.62 E-value=8.6e-07 Score=75.04 Aligned_cols=118 Identities=12% Similarity=0.054 Sum_probs=83.5
Q ss_pred cCCceeEeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEeceeee----c
Q 027374 79 RGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQ----Y 154 (224)
Q Consensus 79 RGG~iTyHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~i~----~ 154 (224)
|.|..++.-||.|....++.......++......--.++.++++.++++. ...+-+|+||+++||||+|=+... .
T Consensus 44 R~GR~W~Sp~G~L~~Si~l~~~~~~~~~~~~~~l~~~av~~~l~~~~~~~-~~iKWPNDI~~~~kKi~GILiE~~~~~~~ 122 (190)
T PRK05935 44 KFGKSWHSSDQDLLASFCFFITVLNIDVSLLFRLGTEAVMRLGEDLGITE-AVIKWPNDVLVHGEKLCGVLCETIPVKGG 122 (190)
T ss_pred CCCCeeeCCCCCeEEEEEEccCCCCcCHHHHHHHHHHHHHHHHHHhCCcc-ccccCCCeEEECCcEEEEEEEeccccCCC
Confidence 67888888889776666665544334444433322247788888888753 357899999999999999876632 2
Q ss_pred cEEEeeeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccc
Q 027374 155 GITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEP 203 (224)
Q Consensus 155 ~vt~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~ 203 (224)
....=|+.+|++.+.+.+. ++ ....|||+.+.|..++.+++..
T Consensus 123 ~~vVIGIGINv~~~~~~~~-----~~-~~~atsL~~~~~~~~~~~~l~~ 165 (190)
T PRK05935 123 LGVILGIGVNGNTTKDELL-----GI-DQPATSLQELLGHPIDLEEQRE 165 (190)
T ss_pred cEEEEEEeEecCCCchhcc-----cc-CCCcccHHHhhCCCCCHHHHHH
Confidence 3578899999998755433 22 2468999988898888877766
No 21
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]
Probab=98.34 E-value=3e-06 Score=74.08 Aligned_cols=117 Identities=15% Similarity=0.059 Sum_probs=84.7
Q ss_pred ecCCceeEeCCC-ceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEeceeeec--
Q 027374 78 QRGGDITFHGPH-QAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQY-- 154 (224)
Q Consensus 78 ~RGG~iTyHgPG-QLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~i~~-- 154 (224)
-|.|..++.-|| +|....++........+..+.-..--++.++|.++++++ ..+-+|+|++++||+|.|=+....
T Consensus 35 GR~GR~W~Sp~G~~l~~S~~l~~~~~~~~~~~lsl~~g~av~~al~~~~~~~--~iKWPNDv~~~~kKl~GIL~E~~~~~ 112 (238)
T COG0340 35 GRRGRKWSSPKGGGLYMSLLLRPDLPPAELPSLSLVAGLAVAEALRKFGIDV--RIKWPNDVLLNGKKLAGILVEAVGDE 112 (238)
T ss_pred CCCCCcccCCCCCCEEEEEEEcCCcChhhcchhHHHHHHHHHHHHHHhCccc--CccCCcceeECCcceEEEEEeeeecC
Confidence 366777888887 676666664433212223333344448899999999777 478999999999999999887644
Q ss_pred ---cEEEeeeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccc
Q 027374 155 ---GITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEP 203 (224)
Q Consensus 155 ---~vt~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~ 203 (224)
....-|+.+||+.....|. -+ +...|||+++. ..++.+++..
T Consensus 113 ~~~~~~viGIGINv~~~~~~~~-----~i-~~~atsL~~~~-~~~~r~~l~~ 157 (238)
T COG0340 113 NGLLAVVVGIGINVNNPPPDFE-----DI-GQPATSLQEEG-EEIDREELLA 157 (238)
T ss_pred CCceEEEEEEEEeeccCCcchh-----hh-hhhhhhHHhhh-CCCCHHHHHH
Confidence 2678899999999987763 22 36799999875 6777777766
No 22
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region. The protein name suggests that this enzyme transfers biotin only to acetyl-CoA-carboxylase but it also transfers the biotin moiety to other proteins. The apparent orthologs among the eukaryotes are larger proteins that contain a single copy of this domain.
Probab=98.22 E-value=1.2e-05 Score=69.89 Aligned_cols=117 Identities=16% Similarity=0.082 Sum_probs=77.0
Q ss_pred ecCCceeEeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEeceeeec---
Q 027374 78 QRGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQY--- 154 (224)
Q Consensus 78 ~RGG~iTyHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~i~~--- 154 (224)
-|.|..++--||.|....++........+..+--..--++.++|+.++++. ..+-+|+|+++++|||+|=+....
T Consensus 39 GR~gr~W~Sp~g~l~~S~~l~~~~~~~~~~~ls~~~~lAv~~al~~~~~~~--~iKWPNDI~~~~kKi~GIL~E~~~~~~ 116 (237)
T TIGR00121 39 GRRGRKWLSPEGGLYFSLILRPDLPKSPAPGLTLVAGIAIAEVLKELGDQV--QVKWPNDILLKDKKLGGILTELTGKEN 116 (237)
T ss_pred CCCCCcccCCCCceEEEEEECCCCChhHhhhhHHHHHHHHHHHHHHhCCCC--CCcCCceEEECCeEEEEEEEEcccCCC
Confidence 356777777778655555554321111111122222337788999988665 467999999999999998776432
Q ss_pred --cEEEeeeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccc
Q 027374 155 --GITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEP 203 (224)
Q Consensus 155 --~vt~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~ 203 (224)
....=|+.+||+.+- | |.++. ...|||.++++..++.+++-.
T Consensus 117 ~~~~vviGIGiNv~~~~--~----~~~~~-~~a~sl~~~~~~~~~~~~ll~ 160 (237)
T TIGR00121 117 RADYVVIGIGINVQNRK--P----AESLR-EQAISLSEEAGIDLDRGELIE 160 (237)
T ss_pred CcCEEEEEEEEccCCCC--C----chhhc-ccceehHHhhCCCCCHHHHHH
Confidence 346889999998652 1 34443 568999988888888777655
No 23
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional
Probab=97.93 E-value=0.00018 Score=64.38 Aligned_cols=107 Identities=12% Similarity=0.100 Sum_probs=71.1
Q ss_pred CceeEeCCCceEEEEeeecCCCCCCHHHHHH-HHHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEeceeee------
Q 027374 81 GDITFHGPHQAILYPIISLRDIGLGARNYVE-KLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQ------ 153 (224)
Q Consensus 81 G~iTyHgPGQLV~Ypil~l~~~~~~~~~yv~-~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~i~------ 153 (224)
|..++--||-|.+..++..+........++. ..--+++++|+.++++. +.+-+|+|++++||||+|=+...
T Consensus 72 gR~W~Sp~G~L~~S~~l~~~~~~~~~~~~Lsl~~alAv~~~L~~~~~~~--~IKWPNDI~~~~kKiaGILiE~~~~~~~~ 149 (285)
T PTZ00275 72 DRIWLSEKGNLFTTFVFLWNRNDIEKVKYLAQTCTVAISKTLEYFHLVT--QIKWINDVLVNYKKIAGCLVHLYYLDDFP 149 (285)
T ss_pred CCEEECCCCceEEEEEEecCCcCHhHhHHHHHHHHHHHHHHHHHhCCce--eEECCCccccCCcEEEEEEEeeeeccccc
Confidence 7777888887666666643332211111222 22236788999999876 46899999999999999877643
Q ss_pred -----ccEEEeeeeeeccCCccccccccCCCCCCCceeeehhhhCCCC
Q 027374 154 -----YGITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVR 196 (224)
Q Consensus 154 -----~~vt~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~ 196 (224)
.....=|+.|||+.. +| |..+ ....|||..+.+..+
T Consensus 150 ~~~~~~~~vViGIGINvn~~--~~----~~~~-~~~atSL~~~~~~~~ 190 (285)
T PTZ00275 150 NLNSRYVCVMVGIGINVTLE--DK----HNLL-NNNYTSIKKELQRDF 190 (285)
T ss_pred cccCceeEEEEEEEEecCCC--CC----cccc-cCCcccHHHHhCccc
Confidence 135788999999863 22 1122 356799998777654
No 24
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=97.89 E-value=0.00015 Score=65.54 Aligned_cols=118 Identities=21% Similarity=0.176 Sum_probs=77.4
Q ss_pred ecCCceeEeCCCc-eEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEeceeeec--
Q 027374 78 QRGGDITFHGPHQ-AILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQY-- 154 (224)
Q Consensus 78 ~RGG~iTyHgPGQ-LV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~i~~-- 154 (224)
-|.|..++--||. |.+..++...........+--..--++.++|++++... ...+-+|+|+++++|||+|=+....
T Consensus 116 GR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~~~av~~al~~~~~~~-~~iKWPNDI~~~~kKl~GIL~E~~~~~ 194 (319)
T PRK11886 116 GRRGRQWFSPFGGNLYLSLYWRLNQGPAQAMGLSLVVGIAIAEALRRLGAID-VGLKWPNDIYLNDRKLAGILVELSGET 194 (319)
T ss_pred CCCCCcccCCCCCCEEEEEEeCCCCChHHHhhHHHHHHHHHHHHHHHhcCCC-cceeCCceeeECCeeEEEEEEEeccCC
Confidence 4788888888885 77777665431101111111222336788898887633 3578999999999999998776431
Q ss_pred ---cEEEeeeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccc
Q 027374 155 ---GITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEP 203 (224)
Q Consensus 155 ---~vt~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~ 203 (224)
....=|+.+||+++- | |..+.+...|||+++ +..++.+++-.
T Consensus 195 ~~~~~~viGIGiNv~~~~--~----~~~~~~~~~~sl~~~-~~~~~~~~l~~ 239 (319)
T PRK11886 195 GDAAHVVIGIGINVAMPD--F----PEELIDQPWSDLQEA-GPTIDRNQLAA 239 (319)
T ss_pred CCccEEEEEEEEccCCCC--C----chhhhccceeeHhhc-CCCCCHHHHHH
Confidence 246789999998762 2 222224567999864 88888777655
No 25
>PTZ00276 biotin/lipoate protein ligase; Provisional
Probab=97.77 E-value=0.00023 Score=62.40 Aligned_cols=89 Identities=13% Similarity=0.039 Sum_probs=55.8
Q ss_pred cCCceeEeCCCceEEEEeeecCCCCCCHHHHHHH-HHHHHHHHHHhc--CCcCCCCCCCCCeEEecCCeEEEeceeeecc
Q 027374 79 RGGDITFHGPHQAILYPIISLRDIGLGARNYVEK-LESTMIEIASLY--GVKACPGQKGETGIWVGDRKIGAIGVRIQYG 155 (224)
Q Consensus 79 RGG~iTyHgPGQLV~Ypil~l~~~~~~~~~yv~~-Le~~vi~~l~~~--gi~a~~~~~~~~GVwv~~rKIasiGv~i~~~ 155 (224)
|.|..++.-||-|....+++......+....+.. .--++.++++++ +++. ..+-+|+|++++||||+|=+.....
T Consensus 47 R~gR~W~Sp~g~l~~S~~l~~~~~~~~~~~~lsl~~alav~~al~~~~~~~~~--~iKWPNDI~~~~kKiaGILiE~~~~ 124 (245)
T PTZ00276 47 TGGRTWTSPKGNMYFTLCIPQKGVPPELVPVLPLITGLACRAAIMEVLHGAAV--HTKWPNDIIYAGKKIGGSLIESEGE 124 (245)
T ss_pred CCCCcccCCCCCeEEEEEECCCccChhHhhHHHHHHHHHHHHHHHHhccCCce--EEEcCCeeEECCcEEEEEEEcccCC
Confidence 4555566667745444444322222221112222 222566777775 6766 3678999999999999987775545
Q ss_pred EEEeeeeeeccCCc
Q 027374 156 ITSHGLAFNIDPDL 169 (224)
Q Consensus 156 vt~HG~aLNv~~dl 169 (224)
...=|+.+||+.+.
T Consensus 125 ~vvIGIGINv~~~~ 138 (245)
T PTZ00276 125 YLIIGIGMNIEVAP 138 (245)
T ss_pred EEEEEEEEeeCCCC
Confidence 67899999998764
No 26
>PRK08477 biotin--protein ligase; Provisional
Probab=97.39 E-value=0.0019 Score=55.56 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=55.2
Q ss_pred cCCceeEeCCCceEEEEeeecCCCCCCHHH-HHH-HHHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEeceeeeccE
Q 027374 79 RGGDITFHGPHQAILYPIISLRDIGLGARN-YVE-KLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGI 156 (224)
Q Consensus 79 RGG~iTyHgPGQLV~Ypil~l~~~~~~~~~-yv~-~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~i~~~v 156 (224)
|.|...+--||-|....+++.......+.. .+. ..--++.++++.+|++. ..+-+|+|+++++|||+|=+......
T Consensus 42 R~gR~W~Sp~G~L~~S~~l~~~~~~~~~~~~~lsl~~~~av~~~l~~~~~~~--~iKWPNDI~~~~kKi~GIL~E~~~~~ 119 (211)
T PRK08477 42 SRGNSWEGKKGNLFFSFALKESDLPKDLPLQSSSIYFGFLLKEVLKELGSKV--WLKWPNDLYLDDKKIGGVITNKIKNF 119 (211)
T ss_pred CCCCcccCCCCCeEEEeecCCCcchhhhhhHHHHHHHHHHHHHHHHHhCCCe--EEcCCCeeEECCcEEEEEEEeecCCe
Confidence 445555556665544444433221111100 111 12236777888898876 36789999999999999987755455
Q ss_pred EEeeeeeeccCC
Q 027374 157 TSHGLAFNIDPD 168 (224)
Q Consensus 157 t~HG~aLNv~~d 168 (224)
..=|+.+||+..
T Consensus 120 vviGiGiNv~~~ 131 (211)
T PRK08477 120 IVCGIGLNLKFS 131 (211)
T ss_pred EEEEEEEeeCCC
Confidence 778999999854
No 27
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=97.23 E-value=0.0016 Score=63.96 Aligned_cols=89 Identities=16% Similarity=0.078 Sum_probs=60.6
Q ss_pred EecCCceeEeCCCc-eEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEeceeeec-
Q 027374 77 TQRGGDITFHGPHQ-AILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQY- 154 (224)
Q Consensus 77 ~~RGG~iTyHgPGQ-LV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~i~~- 154 (224)
+-|.|..++--||. |....++........+..+--..--+++++|+.+|++. +.+-+|+|++++||||.|=+....
T Consensus 122 RGRrGR~W~Sp~G~~Ly~S~~l~~~~~~~~~~~Lsl~vgvAv~~aL~~~g~~v--~lKWPNDIl~~gkKlaGILiE~~~~ 199 (592)
T PRK13325 122 RGRQGRKWSHRLGECLMFSFGWVFDRPQYELGSLSPVAAVACRRALSRLGLKT--QIKWPNDLVVGRDKLGGILIETVRT 199 (592)
T ss_pred CCCCCCcccCCCCCcEEEEeeecCCCChhhhhhHHHHHHHHHHHHHHHcCCCc--eEeCcceEEECCceEEEEEEeeeec
Confidence 34888888888885 66666664332111111122223337788999999976 468999999999999998877542
Q ss_pred ---cEEEeeeeeeccC
Q 027374 155 ---GITSHGLAFNIDP 167 (224)
Q Consensus 155 ---~vt~HG~aLNv~~ 167 (224)
....=|+.|||+.
T Consensus 200 ~~~~~vVIGIGINv~~ 215 (592)
T PRK13325 200 GGKTVAVVGIGINFVL 215 (592)
T ss_pred CCCcEEEEEEEEeeCC
Confidence 1357899999973
No 28
>PRK06955 biotin--protein ligase; Provisional
Probab=97.22 E-value=0.0038 Score=56.21 Aligned_cols=121 Identities=12% Similarity=0.068 Sum_probs=70.9
Q ss_pred EecCCceeEeCCCc-eEEEEeeecCCCCCC--HHHHHHHHHHHHHHHHHhc----CCcCCCCCCCCCeEEecCCeEEEec
Q 027374 77 TQRGGDITFHGPHQ-AILYPIISLRDIGLG--ARNYVEKLESTMIEIASLY----GVKACPGQKGETGIWVGDRKIGAIG 149 (224)
Q Consensus 77 ~~RGG~iTyHgPGQ-LV~Ypil~l~~~~~~--~~~yv~~Le~~vi~~l~~~----gi~a~~~~~~~~GVwv~~rKIasiG 149 (224)
+-|.|...+--||. |....+++....... .-.++-.+ +++++|+.+ +++. +.+-+|+|++++||||+|=
T Consensus 77 RGR~GR~W~Sp~G~~L~~Si~l~~~~~~~~~~~Lsl~~gl--Av~~al~~~~~~~~~~~--~iKWPNDIl~~gkKiaGIL 152 (300)
T PRK06955 77 RGRQGRPWFAQPGNALLFSVACVLPRPVAALAGLSLAVGV--ALAEALAALPAALGQRI--ALKWPNDLLIAGRKLAGIL 152 (300)
T ss_pred CCCCcCcccCCCCCcEEEEeEecCCCChHHhhhHHHHHHH--HHHHHHHHhhcccCCce--eeeCCceeeECCcEEEEEE
Confidence 35888888888885 655555543311111 11122222 566778776 4455 4679999999999999987
Q ss_pred eeee---c--cEEEeeeeeeccCCcccc-------ccccCCCCCCCceeeehhhhCCCCCcccccc
Q 027374 150 VRIQ---Y--GITSHGLAFNIDPDLNYF-------KHIVPCGIADKDVTSLRRETGAVRIFNTLEP 203 (224)
Q Consensus 150 v~i~---~--~vt~HG~aLNv~~dl~~f-------~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~ 203 (224)
+... . ....=|+.+||+.+.+.- ....|.. .+...|+++. .+..++.+++-.
T Consensus 153 iE~~~~~~~~~~vVIGIGINv~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~-~~~~~~~~~ll~ 216 (300)
T PRK06955 153 IETVWATPDATAVVIGIGLNVRRADAVAAEVDALRAREAALA-RGLPPVALAA-ACAGANLTDTLA 216 (300)
T ss_pred EEcccCCCCccEEEEEEEEeeCCCcccccccccccccccccc-ccccchhhhh-cCCCCCHHHHHH
Confidence 7642 1 246889999998653210 0011111 1233555553 466666666654
No 29
>KOG0325 consensus Lipoyltransferase [Energy production and conversion; Coenzyme transport and metabolism]
Probab=91.77 E-value=0.11 Score=44.99 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=28.2
Q ss_pred hhcCCeEEEEecCCceeEeCCCceEEEEeeecCC
Q 027374 68 KKLGAELHYTQRGGDITFHGPHQAILYPIISLRD 101 (224)
Q Consensus 68 ~~~gi~v~~~~RGG~iTyHgPGQLV~Ypil~l~~ 101 (224)
....+.++.+.+|+.||||| +||.+||.|....
T Consensus 140 ~d~k~aaiGi~vsr~IT~HG-laLN~~tDL~~fn 172 (226)
T KOG0325|consen 140 GDAKIAAIGIRVSREITYHG-LALNVNTDLTYFN 172 (226)
T ss_pred cCCeeEEEEEEecCcEeecc-eEEEeccCcchhh
Confidence 33478899999999999999 9999999876654
No 30
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=78.60 E-value=3.2 Score=34.99 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEecee-eec-cEEEeeeeeeccCCccc
Q 027374 113 LESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVR-IQY-GITSHGLAFNIDPDLNY 171 (224)
Q Consensus 113 Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~-i~~-~vt~HG~aLNv~~dl~~ 171 (224)
|-..+.+.|.++|++.. | .-.++|+++||+.- -++ .+. ..-.| +++||+.+-.|
T Consensus 87 lv~i~kE~L~~~gv~~~-R--~GDDLy~~~~KLSV-SIAt~s~vS~kIH-~GiNV~~~g~p 142 (183)
T PF04017_consen 87 LVAIIKEVLEEYGVKLR-R--EGDDLYVNGRKLSV-SIATASPVSTKIH-FGINVSSEGTP 142 (183)
T ss_dssp HHHHHHHHHHTTT--EE-E--ETTEEEETTEE-EE-EEEEEETTEEEEE-EEEESS-TT--
T ss_pred HHHHHHHHHHhcCCcee-e--cccceeECCCEEEE-EEEecCcchheEE-EeEeecccCcc
Confidence 44455568999999983 4 45899999999853 233 233 33344 78999998655
No 31
>COG2029 Uncharacterized conserved protein [Function unknown]
Probab=76.56 E-value=7.8 Score=32.46 Aligned_cols=52 Identities=19% Similarity=0.331 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEeceeeeccE--EEeeeeeeccCC
Q 027374 112 KLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGI--TSHGLAFNIDPD 168 (224)
Q Consensus 112 ~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~i~~~v--t~HG~aLNv~~d 168 (224)
.|-..+.+.|..+|+++. | .-.+++++|||+.- -++....+ -.| +.+||...
T Consensus 89 Llv~i~~E~l~~~gv~~~-R--eGDDly~~grKLtV-sIat~s~vs~kiH-lGiNV~t~ 142 (189)
T COG2029 89 LLVAILKEVLEKLGVDLS-R--EGDDLYVEGRKLTV-SIATVSPVSSKIH-LGINVKTE 142 (189)
T ss_pred HHHHHHHHHHHHhCCccc-c--cCCceeecCcEEEE-EEEecCCcceeEE-EeEeeecc
Confidence 344555678888999993 4 56899999999853 23333322 233 56788776
No 32
>KOG1536 consensus Biotin holocarboxylase synthetase/biotin-protein ligase [Coenzyme transport and metabolism]
Probab=69.48 E-value=35 Score=33.74 Aligned_cols=90 Identities=21% Similarity=0.216 Sum_probs=55.7
Q ss_pred EecCCceeEeCCCceEEEEee--ecCCCCCCHHHHHHHHHHHH-HHHHHh-c---CCcCCCCCCCCCeEEecC-CeEEEe
Q 027374 77 TQRGGDITFHGPHQAILYPII--SLRDIGLGARNYVEKLESTM-IEIASL-Y---GVKACPGQKGETGIWVGD-RKIGAI 148 (224)
Q Consensus 77 ~~RGG~iTyHgPGQLV~Ypil--~l~~~~~~~~~yv~~Le~~v-i~~l~~-~---gi~a~~~~~~~~GVwv~~-rKIasi 148 (224)
+.|||.++.---|-+..-.++ +++.+-..+..|+.-|--+. +++++. = .|+. +++.++++|+.+ -||++|
T Consensus 425 RGRGgN~WlsP~G~~~~sf~ism~~ksr~~~~i~~~~~l~~~~~v~~~~~~pGy~dIpv--rIKWPNDlY~~~~lKvgGi 502 (649)
T KOG1536|consen 425 RGRGGNVWLSPKGCAMSSFTISMPLKSRVVPLIPFVQHLALVAVVEAVRYAPGYPDIPV--RIKWPNDLYVNGYLKVGGI 502 (649)
T ss_pred ccCCCCeeecCcceEeEEEEEEeecccccccchHHHHHHHHHHHHHHHhcCCCCCCCce--eeecCccceeeeccccceE
Confidence 458887665555666555555 55544445555665543333 333332 2 3556 467999999998 899987
Q ss_pred ceee--e--ccEEEeeeeeeccCC
Q 027374 149 GVRI--Q--YGITSHGLAFNIDPD 168 (224)
Q Consensus 149 Gv~i--~--~~vt~HG~aLNv~~d 168 (224)
=+.. + ....+-|..+||++|
T Consensus 503 Lv~st~r~n~f~v~iGCGiNVtN~ 526 (649)
T KOG1536|consen 503 LVTSTYRSNKFNVSIGCGINVTND 526 (649)
T ss_pred EEEeeecCceEEEEEeeeeEecCC
Confidence 6642 2 245566888888876
No 33
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=59.37 E-value=6.7 Score=22.05 Aligned_cols=11 Identities=27% Similarity=0.890 Sum_probs=9.0
Q ss_pred eeEeCCCceEE
Q 027374 83 ITFHGPHQAIL 93 (224)
Q Consensus 83 iTyHgPGQLV~ 93 (224)
++||||++.-+
T Consensus 4 v~y~G~~~v~v 14 (23)
T PF13823_consen 4 VVYHGPKDVRV 14 (23)
T ss_dssp EEEEETTEEEE
T ss_pred eEEeCCCceEE
Confidence 69999998754
No 34
>PF09322 DUF1979: Domain of unknown function (DUF1979); InterPro: IPR015401 This N-terminal domain is functionally uncharacterised and found in various Oryza sativa (Rice) mutator-like transposases.
Probab=35.61 E-value=31 Score=23.51 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=21.5
Q ss_pred eEeCCCceEE--------EEeeecCCCCCCHHHHHHHHHHHHHHHH
Q 027374 84 TFHGPHQAIL--------YPIISLRDIGLGARNYVEKLESTMIEIA 121 (224)
Q Consensus 84 TyHgPGQLV~--------Ypil~l~~~~~~~~~yv~~Le~~vi~~l 121 (224)
.|||||-+-. ++|+--+.........+..+..|+++.+
T Consensus 9 ~~hg~GNvR~Gp~GvdLs~Fi~~~rGIdrpAERs~~si~~WLmRG~ 54 (58)
T PF09322_consen 9 IYHGEGNVRYGPTGVDLSEFIVTSRGIDRPAERSVPSIKGWLMRGF 54 (58)
T ss_pred EEEcCCceeECCCccchhHeeeeccccCchhhhccHHHHHHHHhcc
Confidence 4888887643 3333333223345556677777776654
No 35
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=33.42 E-value=54 Score=29.67 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=33.3
Q ss_pred CeeeccCCCCCCCCCcc-HHHHhhcCCeEEEEecCCceeEeCCCceE
Q 027374 47 PTYTLGKRRTDHNLLIS-EAELKKLGAELHYTQRGGDITFHGPHQAI 92 (224)
Q Consensus 47 PvyT~Gr~~~~~~~l~~-~~~l~~~gi~v~~~~RGG~iTyHgPGQLV 92 (224)
++++.|+...-.|.... -+++++.++++++|++=|.|++=..|+-.
T Consensus 235 AliS~G~~N~yghPh~~Vl~rl~~~~~~v~rTd~~G~I~~~~~~~~~ 281 (293)
T COG2333 235 ALISSGRNNRYGHPHQEVLERLQKRGIKVYRTDQQGAITVTFSGDGW 281 (293)
T ss_pred EEEEeeccCCCCCCcHHHHHHHHhcCCeEEecCCCCeEEEEeCCCeE
Confidence 46667775443332111 26799999999999999999999888654
No 36
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=28.98 E-value=1.9e+02 Score=25.37 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=30.0
Q ss_pred EEeeecCCC-CCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEe
Q 027374 94 YPIISLRDI-GLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWV 140 (224)
Q Consensus 94 Ypil~l~~~-~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv 140 (224)
+.++||.-. +.+.. -+......+-+.|+++|+++.....+..|+-|
T Consensus 104 ~~vfDLDP~~~~~f~-~v~~~A~~~r~~L~~lgL~s~~KTSG~kGlHV 150 (231)
T cd04863 104 RLVFDLDPGEPAGLV-ECARVALWLRDRLAALGLASFPKTSGSKGLHL 150 (231)
T ss_pred EEEEECCCCCCCCHH-HHHHHHHHHHHHHHHcCCccceECCCCCeEEE
Confidence 457899764 23433 34555566778999999999544456677554
No 37
>COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.76 E-value=13 Score=37.97 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=49.4
Q ss_pred eCCCceEEEEeeecCC--C-CCCHHHHHHHHHHHHHHHH-HhcCCcCCCCCCCCCeEEec---------------CCeEE
Q 027374 86 HGPHQAILYPIISLRD--I-GLGARNYVEKLESTMIEIA-SLYGVKACPGQKGETGIWVG---------------DRKIG 146 (224)
Q Consensus 86 HgPGQLV~Ypil~l~~--~-~~~~~~yv~~Le~~vi~~l-~~~gi~a~~~~~~~~GVwv~---------------~rKIa 146 (224)
|.|.+...||++.-+= . |.++.++...=+ --..| +++|+.=..+.|+++.+--+ +.|+|
T Consensus 529 ~~~~~~~~~PmvrGRl~aiNGq~v~~~~~~~~--~~~al~rd~~LT~~~~~P~~n~l~aG~Ww~~~~~g~P~VS~e~~~A 606 (829)
T COG3127 529 ASPEGETFYPMVRGRLTAINGQPVTEMSVPPS--ARWALRRDLNLTWAEKRPENNPLTAGRWWPKNDSGEPEVSMEEGEA 606 (829)
T ss_pred cCCCcccccceeeeeEEEecCccCccccCCch--HHHHHhcccCcchhhcCCCCCccccccCCCCCCCCCCccchhHhHH
Confidence 6788888899885432 1 333443322222 22344 46887632344555554322 25777
Q ss_pred E-eceeeeccEEEeeeeeeccCCc
Q 027374 147 A-IGVRIQYGITSHGLAFNIDPDL 169 (224)
Q Consensus 147 s-iGv~i~~~vt~HG~aLNv~~dl 169 (224)
. +|+++-+-+|+-+..=|++--.
T Consensus 607 ~~LglKLGDtvTf~v~gq~i~A~I 630 (829)
T COG3127 607 KRLGLKLGDTVTFMVLGQNITAKI 630 (829)
T ss_pred HHhCCccCCEEEEEeccceEEeee
Confidence 7 9999999999999888876533
No 38
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=25.26 E-value=30 Score=28.11 Aligned_cols=16 Identities=6% Similarity=-0.008 Sum_probs=13.6
Q ss_pred CCCCeEEEEeCCCeee
Q 027374 35 KISDTLLSLQHPPTYT 50 (224)
Q Consensus 35 ~~~~~lll~eH~PvyT 50 (224)
+++|.+||+||.|.|-
T Consensus 70 dSpNFlWFrErYe~F~ 85 (167)
T COG3818 70 DSPNFLWFRERYENFF 85 (167)
T ss_pred CCCceeehhhhCCceE
Confidence 5789999999998664
No 39
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=23.17 E-value=4e+02 Score=23.99 Aligned_cols=78 Identities=15% Similarity=0.263 Sum_probs=43.1
Q ss_pred HHHhhcCCeEEEEecCCc------------eeEeCCCceEEEEeeecCCCCCCHHHHHHHHHHH--HHHHHHhcCCcCCC
Q 027374 65 AELKKLGAELHYTQRGGD------------ITFHGPHQAILYPIISLRDIGLGARNYVEKLEST--MIEIASLYGVKACP 130 (224)
Q Consensus 65 ~~l~~~gi~v~~~~RGG~------------iTyHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~--vi~~l~~~gi~a~~ 130 (224)
+.|++.|++|+--+--|+ ..-|--|.++.||+..-.++--...+.+..|.+. +-++....+++...
T Consensus 64 e~L~~~GvdV~ifddtg~~~TPDsvFPNNWFSTh~~g~v~LyPM~~~nRRlER~~~lid~lk~~~~v~~v~dy~~le~~~ 143 (318)
T COG4874 64 EGLRQAGVDVVIFDDTGQGETPDSVFPNNWFSTHEAGEVFLYPMACANRRLERPEALIDTLKQGFAVKKVHDYLALEEQQ 143 (318)
T ss_pred HHHHhcCceEEEeecCCCCCCCcccCCCcccccCcCCeEEEeeccCccccccchHHHHHHHHhhhhhhhhhhhhccCccc
Confidence 567888888876643332 2358889999999996655422333333433322 22234445554321
Q ss_pred CCCCCCeEEecC
Q 027374 131 GQKGETGIWVGD 142 (224)
Q Consensus 131 ~~~~~~GVwv~~ 142 (224)
.--..+|+.|-+
T Consensus 144 ~FLEgTG~mV~D 155 (318)
T COG4874 144 AFLEGTGVMVMD 155 (318)
T ss_pred ceeeccceEEec
Confidence 112457777743
No 40
>PRK05761 DNA polymerase I; Reviewed
Probab=23.08 E-value=1.8e+02 Score=29.98 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=33.8
Q ss_pred CCCceEEEEeeecCC----------CCCCHHHHHHHHHHHHHHHHHhcCCcC
Q 027374 87 GPHQAILYPIISLRD----------IGLGARNYVEKLESTMIEIASLYGVKA 128 (224)
Q Consensus 87 gPGQLV~Ypil~l~~----------~~~~~~~yv~~Le~~vi~~l~~~gi~a 128 (224)
+||+-|.|.|++-+. ...|...|++.|..++-++|.-||++-
T Consensus 721 ~~Gd~I~YVi~~~~~~~~p~~~~~~~~iD~~yYi~~l~~~~~~il~~~g~~~ 772 (787)
T PRK05761 721 SPGDIISYVKVDDKRGVKPVQLAKLSEIDVEKYIELLRSALEQILSALGVSW 772 (787)
T ss_pred CCCCEEEEEEEcCCCCCChhhhcccCCcCHHHHHHHHHHHHHHHHHHhCCCH
Confidence 478888888875421 246889999999999999999999975
No 41
>COG3052 CitD Citrate lyase, gamma subunit [Energy production and conversion]
Probab=22.73 E-value=1.1e+02 Score=23.20 Aligned_cols=22 Identities=18% Similarity=0.537 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCcC
Q 027374 107 RNYVEKLESTMIEIASLYGVKA 128 (224)
Q Consensus 107 ~~yv~~Le~~vi~~l~~~gi~a 128 (224)
++|=+.+|+.+.++|+.||+.+
T Consensus 39 kQFG~~I~~tV~~~La~l~V~~ 60 (98)
T COG3052 39 KQFGDAIRQTVLEVLARLGVRG 60 (98)
T ss_pred HHHHHHHHHHHHHHHHHhCccc
Confidence 4677999999999999999976
No 42
>PRK11539 ComEC family competence protein; Provisional
Probab=20.16 E-value=1.2e+02 Score=30.81 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=21.3
Q ss_pred HHHhhcCCeEEEEecCCceeEeCC
Q 027374 65 AELKKLGAELHYTQRGGDITFHGP 88 (224)
Q Consensus 65 ~~l~~~gi~v~~~~RGG~iTyHgP 88 (224)
+++++.|+++++|++-|.||+.--
T Consensus 704 ~rl~~~g~~~~~T~~~G~I~~~~~ 727 (755)
T PRK11539 704 QRYQQQGYQWRDTPHSGQLSVYFS 727 (755)
T ss_pred HHHHHcCCeEEEcCCCCcEEEEEC
Confidence 679999999999999999998543
Done!