Query         027374
Match_columns 224
No_of_seqs    138 out of 1123
Neff          6.4 
Searched_HMMs 29240
Date          Mon Mar 25 14:49:50 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027374hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1w66_A Lipoyltransferase; lipo 100.0 7.6E-64 2.6E-68  432.5  20.2  203    3-215    10-217 (232)
  2 2qhs_A Lipoyltransferase; glob 100.0 7.4E-60 2.5E-64  408.5  23.3  216    3-222    19-236 (237)
  3 2p5i_A BH3822 protein; PFAM030 100.0   1E-41 3.4E-46  302.0  16.5  197    5-203    13-237 (288)
  4 2c8m_A Lipoate-protein ligase  100.0 8.7E-41   3E-45  292.0  18.0  210    4-221     1-232 (262)
  5 2p0l_A Lipoate-protein ligase  100.0 9.6E-41 3.3E-45  295.8  17.2  197    5-203    11-236 (288)
  6 1vqz_A Lipoate-protein ligase, 100.0 4.5E-38 1.5E-42  284.9  17.8  198    7-212    13-222 (341)
  7 3a7r_A Lipoate-protein ligase  100.0 3.5E-37 1.2E-41  278.5  13.5  198    6-215     2-215 (337)
  8 2e5a_A Lipoyltransferase 1; li 100.0 3.1E-34 1.1E-38  260.1  15.2  196    8-213     6-215 (347)
  9 2dxu_A Biotin--[acetyl-COA-car  98.4   5E-07 1.7E-11   77.3   8.1  110   78-203    47-158 (235)
 10 2eay_A Biotin [acetyl-COA-carb  98.4 1.8E-06 6.2E-11   73.6  10.9  113   79-203    40-155 (233)
 11 3rkx_A Biotin-[acetyl-COA-carb  98.3 2.8E-06 9.7E-11   75.8  10.0  119   78-203   121-246 (323)
 12 2ej9_A Putative biotin ligase;  98.1 5.7E-06   2E-10   70.7   7.7  113   79-203    40-157 (237)
 13 1bia_A BIRA bifunctional prote  98.1 1.2E-05 4.2E-10   71.4   9.8  118   78-203   117-240 (321)
 14 3rux_A BIRA bifunctional prote  98.0 1.8E-05   6E-10   69.0   9.5  115   78-203    72-192 (270)
 15 3bfm_A Biotin protein ligase-l  98.0 2.7E-05 9.1E-10   66.3  10.1  113   81-203    38-161 (235)
 16 2ddz_A 190AA long hypothetical  85.5     2.5 8.4E-05   34.7   7.1   86  113-214    91-179 (190)
 17 4eu0_A PELD; C-DI-GMP, signali  50.7      26  0.0009   30.4   5.8   87   74-185   205-296 (298)
 18 2iru_A Putative DNA ligase-lik  23.3 1.2E+02  0.0041   26.4   5.4   46   94-140   136-182 (303)

No 1  
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=100.00  E-value=7.6e-64  Score=432.54  Aligned_cols=203  Identities=38%  Similarity=0.624  Sum_probs=186.4

Q ss_pred             CCceeEEEEcCcccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCc
Q 027374            3 VPRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGD   82 (224)
Q Consensus         3 ~~~~~~~~~lG~~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~   82 (224)
                      .++.+.++++|++||.++|++|+.+++.+.++ .+|+|||+|||||||+|++++.+++.       ..||+|++++|||+
T Consensus        10 ~~~~~~~~~lg~~~Y~~a~~~q~~l~~~~~~~-~~d~l~l~eh~pv~TiG~~q~~~~l~-------~~gi~Vvr~~rGG~   81 (232)
T 1w66_A           10 KLSAIDVRQLGTVDYRTAWQLQRELADARVAG-GADTLLLLEHPAVYTAGRRTETHERP-------IDGTPVVDTDRGGK   81 (232)
T ss_dssp             CCSCCEEEEEEECCHHHHHHHHHHHHHHHHTT-CCCEEEEEECCSEEEECTTCCGGGSC-------TTCCCCEECSSSSS
T ss_pred             cCceEEEEeCCCcCHHHHHHHHHHHHHHhhCC-CCCEEEEEecCCEEEeCCCCChhhhc-------ccCCeEEEecCCCc
Confidence            45689999999999999999999999988765 77999999999999999999987754       24899999999999


Q ss_pred             eeEeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEec---CCeEEEeceeeeccEEEe
Q 027374           83 ITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVG---DRKIGAIGVRIQYGITSH  159 (224)
Q Consensus        83 iTyHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~---~rKIasiGv~i~~~vt~H  159 (224)
                      +|||||||||+|||+++++ +.++++|++.||+++|++|++|||+| .+.++.+|||++   +|||||+|+++++|+|+|
T Consensus        82 ~tYHgPGQlv~Y~Il~l~~-~~~v~~~v~~le~~vI~~L~~~Gi~a-~~~~g~~gV~v~~~~~rKIaaig~r~~~~vt~H  159 (232)
T 1w66_A           82 ITWHGPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCADLGLHA-GRVDGRSGVWLPGRPARKVAAIGVRVSRATTLH  159 (232)
T ss_dssp             EEEECTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHHTTCCC-EEETTEEEEEECSSSCEEEEEEEEEEETTEEEE
T ss_pred             eEEECCCCeEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHcCCCe-EecCCCCeEEecCCCCCEEEEeeeeeeCCEEEc
Confidence            9999999999999999988 78999999999999999999999999 466789999999   999999999999999999


Q ss_pred             eeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccch--HHHHHHHHhhh
Q 027374          160 GLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEPL--DSHKKNFIKIS  215 (224)
Q Consensus       160 G~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~~--~~~~~~f~~~~  215 (224)
                      |+||||++||++|..|+|||+.+++||||++++|.+++++++++.  ..|++.|...+
T Consensus       160 G~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~lg~~~~~~ev~~~l~~~f~~~~~~~~  217 (232)
T 1w66_A          160 GFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGVL  217 (232)
T ss_dssp             EEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             ceEEecCcChHHhcCccccccCCCceeeeHHHhCCCCCHHHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999999999999889999999999993  45666655433


No 2  
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=100.00  E-value=7.4e-60  Score=408.48  Aligned_cols=216  Identities=33%  Similarity=0.603  Sum_probs=195.3

Q ss_pred             CCceeEEEEcCcccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCc
Q 027374            3 VPRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGD   82 (224)
Q Consensus         3 ~~~~~~~~~lG~~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~   82 (224)
                      .++.++++++|++||+++|++|+.+++.+.++..+|+|||+||||+||+|++++.++++.+.++|++.||+|+|++|||+
T Consensus        19 ~~~~~~~~~~g~~~y~~~~a~~e~l~~~~~~g~~~~~L~l~eh~p~~tlG~~q~~~~~~~~~~~l~~~gi~vvrr~rGGg   98 (237)
T 2qhs_A           19 SHMEFLVEDLGLVPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPRVITLGRKATGENLLFPESWYRENGFELYWVERGGD   98 (237)
T ss_dssp             --CEEEEEEEEECCHHHHHHHHHHHHHHHHTTCSCCEEEEEECSSEEEECTTCCGGGBSSCHHHHHHTTCEEEECCSSSS
T ss_pred             CCCeEEEEeCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCEEEeCCCCCchhcccCHHHHHhcCCeEEEEcCCCE
Confidence            35789999999999999999999999988878889999999999999999999998876678999999999999999999


Q ss_pred             eeEeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEeceeeeccEEEeeee
Q 027374           83 ITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLA  162 (224)
Q Consensus        83 iTyHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~i~~~vt~HG~a  162 (224)
                      +|||||||+|+|||+++++   ++++|++.||++++++|++|||+|. +.++.+|||+++||||++|+++++|+++||++
T Consensus        99 avyH~pGqlv~Y~i~~~~~---~~~~~~~~l~~~ii~~L~~lGi~a~-~~~g~~dv~v~grKIag~g~~~~~~~~~hg~a  174 (237)
T 2qhs_A           99 VTYHGPGQLVGYPIFPVGR---EVRRFLRQIEEAIVRVAAGYGISAY-PTPGYAGVWVGEDKLCAIGVAVKEGVSFHGFA  174 (237)
T ss_dssp             EEEECTTEEEEEEECCCTT---CHHHHHHHHHHHHHHHHHHTTCCCB-CCSSSSSEEETTEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEECCCCEEEEEEEECCc---CHHHHHHHHHHHHHHHHHHcCCcEE-EeCCCCCEEECCcEEEEEeEEeeCCeEEEeEE
Confidence            9999999999999999976   8999999999999999999999994 55789999999999999999999999999999


Q ss_pred             eeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccc-h-HHHHHHHHhhhcCCCCCC
Q 027374          163 FNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEP-L-DSHKKNFIKISIKPQLSG  222 (224)
Q Consensus       163 LNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~-~-~~~~~~f~~~~~~~~l~~  222 (224)
                      |||++|+++|..|+|||+.+++||||++++|.+++++++++ + ..|.+.|...+..++|++
T Consensus       175 Lnv~~dl~~f~~i~p~g~~~~~vtSl~~~l~~~~~~~ev~~~l~~~f~~~~~~~~~~~~lt~  236 (237)
T 2qhs_A          175 LNVNTDLNDFTVIVPCGLKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVFGLRPVEGSVHE  236 (237)
T ss_dssp             EESSCCGGGGGGBCCCSSCCSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTCEEC------
T ss_pred             EecccChHHhcCcCcCccCCCcEEeHHHhhCCCCCHHHHHHHHHHHHHHHhCCccccCCCCC
Confidence            99999999999999999999999999999999999999999 3 566666766666777764


No 3  
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=100.00  E-value=1e-41  Score=302.04  Aligned_cols=197  Identities=12%  Similarity=0.077  Sum_probs=169.2

Q ss_pred             ceeEEEEcCc----ccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCC--CCCCCCCccHHHHhhcCCeEEEEe
Q 027374            5 RSLQIWRLGI----VNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKR--RTDHNLLISEAELKKLGAELHYTQ   78 (224)
Q Consensus         5 ~~~~~~~lG~----~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~--~~~~~~l~~~~~l~~~gi~v~~~~   78 (224)
                      ..+++++.+.    .++..+|++|+.+.+...++..+++|+|+||+|+||+|++  +.... -.+.+.|++.||+|+|++
T Consensus        13 ~~~~~i~~~~~~~~~d~~~nlA~de~Ll~~~~~g~~~~~l~l~~~~p~vtlG~~~~q~~~~-e~~~~~~~~~gi~vvRR~   91 (288)
T 2p5i_A           13 QPWRFLDHTSFGPTFQALQSFAYDDTLCTSIGKSQSPPTLRAWVHHNTVVLGIQDSRLPQI-KAGIEALKGFQHDVIVRN   91 (288)
T ss_dssp             -CCEEEEESSCCTTSCHHHHHHHHHHHHHHHTTTSSCCEEEEECCSSEEEEEHHHHTSTTH-HHHHHHHHHTTCEEEEES
T ss_pred             CcEEEEECCCcCCCCCHHHhHHHHHHHHHHhhcCCCCCEEEEecCCCEEEECCCcCCCccH-hhhHHHHHHcCCeEEEEc
Confidence            3688889887    6899999999999998877778899999999999999998  43322 223467899999999999


Q ss_pred             cCCceeEeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCC------CCCCCeEEecCCeEEEeceee
Q 027374           79 RGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPG------QKGETGIWVGDRKIGAIGVRI  152 (224)
Q Consensus        79 RGG~iTyHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~------~~~~~GVwv~~rKIasiGv~i  152 (224)
                      |||++|||||||+ .|+++..++.+.+++++++.++++++++|+.|||++...      .++.+|||++|||||++|.++
T Consensus        92 sGGgaVyHdpG~l-~ysli~~~~~~~~v~~~y~~l~~~ii~~L~~lGi~a~~~~~~~~~c~g~~dl~v~grKI~G~Aqr~  170 (288)
T 2p5i_A           92 SGGLAVVLDSGIL-NLSLVLKEEKGFSIDDGYELMYELICSMFQDHREQIEAREIVGSYCPGSYDLSIDGKKFAGISQRR  170 (288)
T ss_dssp             SCCCCEEECTTEE-EEEEEEECCTTCCHHHHHHHHHHHHHHHTC---CCCEECCCTTSSSCCTTCEEETTEEEEEEEEEE
T ss_pred             CCCceEEECCCcE-EEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEeccccCCCCCCccEEECCEEEEEEEEEE
Confidence            9999999999996 899987666567999999999999999999999998421      268999999999999999999


Q ss_pred             eccEEEeeeeeeccCCccc--------ccc--------ccCCCCCCCceeeehhhhCCCCCcccccc
Q 027374          153 QYGITSHGLAFNIDPDLNY--------FKH--------IVPCGIADKDVTSLRRETGAVRIFNTLEP  203 (224)
Q Consensus       153 ~~~vt~HG~aLNv~~dl~~--------f~~--------I~pCGl~~~~vTSL~~~lg~~~~~~~v~~  203 (224)
                      ++++++||++||+++|++.        |+.        |.|||+.+.+||||+++++.+++++++++
T Consensus       171 ~~~~~lhh~~l~v~~dl~~~~~~l~~f~~~~l~~~~~ki~~~gi~~~~VtsL~~~l~~~~~~~~v~~  237 (288)
T 2p5i_A          171 IRGGVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLL  237 (288)
T ss_dssp             ETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSCCCHHHHHH
T ss_pred             eCCEEEEEEEEEecCCHHHHHHHHHHHHHHhhcCccccccccccchhhceeHHHHcCCCCCHHHHHH
Confidence            9999999999999999988        765        34559988999999999999999999998


No 4  
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=100.00  E-value=8.7e-41  Score=291.98  Aligned_cols=210  Identities=13%  Similarity=0.142  Sum_probs=167.3

Q ss_pred             CceeEEEEcCcccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCce
Q 027374            4 PRSLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDI   83 (224)
Q Consensus         4 ~~~~~~~~lG~~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~i   83 (224)
                      |..+++++.+..++...+++|+.+.+...++. +++|+|+||||+||+|++++..+.+ +.+.|++.||+|+|++|||++
T Consensus         1 m~~~~~i~~~~~~~~~nlA~ee~Ll~~~~~~~-~~~l~l~~~~p~v~lG~~q~~~~e~-~~~~~~~~gi~vvrR~sGGga   78 (262)
T 2c8m_A            1 MEGRLLLLETPGNTRMSLAYDEAIYRSFQYGD-KPILRFYRHDRSVIIGYFQVAEEEV-DLDYMKKNGIMLARRYTGGGA   78 (262)
T ss_dssp             CEEEEECCCCTTCHHHHHHHHHHHHHHCCTTS-CCEEEEECCSSEEEECTTCCHHHHS-CHHHHHHTTCEEEECSSCSCC
T ss_pred             CceEEEEECCCCCHHHHHHHHHHHHHcccCCC-CcEEEEEcCCCEEEECCCCChhHHh-HHHHHHhcCCcEEEECCCCce
Confidence            35677888899999999999999998866554 6899999999999999999876654 457899999999999999999


Q ss_pred             eEeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCC----------cCCCCCCCCCeEEecCCeEEEeceeee
Q 027374           84 TFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGV----------KACPGQKGETGIWVGDRKIGAIGVRIQ  153 (224)
Q Consensus        84 TyHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi----------~a~~~~~~~~GVwv~~rKIasiGv~i~  153 (224)
                      |||||||| .|+++..+. +.++++.++.++++++++|++|||          .+. . ++.+|||++++|||++|.+++
T Consensus        79 vyhd~G~l-~ys~i~~~~-~~~~~~~y~~l~~~ii~~l~~lGi~~~~~~~~~~~a~-~-~g~~dv~v~g~Ki~G~aqr~~  154 (262)
T 2c8m_A           79 VYHDLGDL-NFSVVRSSD-DMDITSMFRTMNEAVVNSLRILGLDARPGELNDVSIP-V-NKKTDIMAGEKKIMGAAGAMR  154 (262)
T ss_dssp             EEECTTEE-EEEEEEECS-SCCHHHHHHHHHHHHHHHHHHTTCCCEECCBCCTTSS-S-SBTTSEEETTEEEEEEEEEEE
T ss_pred             EEeCCCcE-EEEEEEcCC-CCCHHHHHHHHHHHHHHHHHHcCCCcccccccCCcce-E-CCcCcEEECCeEEEEeeeEEe
Confidence            99999998 777773332 358886778999999999999999          663 3 489999999999999999999


Q ss_pred             ccEEEeeeeeeccCCccccc---cccCCCCCCCc-------eeeehhhhCCCCCcccccc-h-HHHHHHHHhhhcCCCCC
Q 027374          154 YGITSHGLAFNIDPDLNYFK---HIVPCGIADKD-------VTSLRRETGAVRIFNTLEP-L-DSHKKNFIKISIKPQLS  221 (224)
Q Consensus       154 ~~vt~HG~aLNv~~dl~~f~---~I~pCGl~~~~-------vTSL~~~lg~~~~~~~v~~-~-~~~~~~f~~~~~~~~l~  221 (224)
                      +++++||++||+++|++.|.   .+.|||+.++.       ||||++++  +++++++++ + ..|.+.|...+...+|+
T Consensus       155 ~~~~lhhgtllv~~d~~~~~~~l~~~~~~~~~~g~~s~~~~vtsL~~~~--~~~~~~v~~~l~~~~~~~~~~~~~~~~lt  232 (262)
T 2c8m_A          155 KGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFV--DVSIDEVRNALIRGFSETLHIDFREDTIT  232 (262)
T ss_dssp             TTEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGTS--CCCHHHHHHHHHHHHHHHHTCEEEECCCC
T ss_pred             CCEEEEEEEEEecCCHHHHHHHhCCChhhhhhhccccHHhhhccHHHhc--CCCHHHHHHHHHHHHHHHhCCCceecCCC
Confidence            99999999999999999885   44579998876       99999865  789999988 3 45555554334444444


No 5  
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3
Probab=100.00  E-value=9.6e-41  Score=295.84  Aligned_cols=197  Identities=11%  Similarity=0.021  Sum_probs=170.7

Q ss_pred             ceeEEEEc---CcccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCC--CCCCCCCccHHHHhhcCCeEEEEec
Q 027374            5 RSLQIWRL---GIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKR--RTDHNLLISEAELKKLGAELHYTQR   79 (224)
Q Consensus         5 ~~~~~~~l---G~~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~--~~~~~~l~~~~~l~~~gi~v~~~~R   79 (224)
                      ..+++++.   |..++..+|++|+.+.+...++..+++|+|+||||+||+|++  ++.... .+.+.|++.||+|+|++|
T Consensus        11 ~~~r~i~~~~~~~~d~~~nlAlde~Ll~~~~~g~~~~~L~l~~~~p~vtlG~~~~q~~~~e-~~~~~~~~~gi~vvRR~s   89 (288)
T 2p0l_A           11 LPVSIFKDYVTDAQDAEKPFIWTEVFLREINRSNQEIILHIWPMTKTVILGMLDRELPHLE-LAKKEIISRGYEPVVRNF   89 (288)
T ss_dssp             SCEEEEECCBCSGGGTTHHHHHHHHHHHHHHHSCSCEEEEECCBSSEEEECTTGGGCTTHH-HHHHHHHTTTCEEEECTT
T ss_pred             CcEEEEECCCCCCCCHHHHHHHHHHHHHhhhcCCCCCEEEEecCCCEEEECCCCCCCcchh-hhHHHHHHCCCEEEEEcC
Confidence            45788887   789999999999999998877778899999999999999999  443322 235678999999999999


Q ss_pred             CCceeEeCCCceEEEEee-ecC-CCCCCHHHHHHHHHHHHHHHHHhcCCcCCCC------CCCCCeEEecCCeEEEecee
Q 027374           80 GGDITFHGPHQAILYPII-SLR-DIGLGARNYVEKLESTMIEIASLYGVKACPG------QKGETGIWVGDRKIGAIGVR  151 (224)
Q Consensus        80 GG~iTyHgPGQLV~Ypil-~l~-~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~------~~~~~GVwv~~rKIasiGv~  151 (224)
                      ||++||||||| +.|+++ +.+ ..+.+++++++.++++++++|+.|||++...      .++.+|||++|+|||++|.+
T Consensus        90 GGgaVyHdpG~-l~ysli~~~~~~~~~~i~~~y~~l~~~ii~aL~~lGi~a~~~~~~~~~c~g~~Dl~v~grKI~G~Aqr  168 (288)
T 2p0l_A           90 GGLAVVADEGI-LNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSDFYQPIEHFEVETSYCPGKFDLSINGKKFAGLAQR  168 (288)
T ss_dssp             CCSCEEESTTE-EEEEEEEESCC---CCHHHHHHHHHHHHHHHTTTSCSCCEECCCTTSSSCCTTCEEETTEEEEEEEEE
T ss_pred             CCCeEEECCCc-EEEEEEEcCccccCCCHHHHHHHHHHHHHHHHHHcCCcEEEccccCCCCCCCccEEECCEEEEEEeEE
Confidence            99999999998 588887 666 4567999999999999999999999988421      26899999999999999999


Q ss_pred             eeccEEEeeeeeeccCCccc--------cccc--------cCCCCCCCceeeehhhhCCCCCcccccc
Q 027374          152 IQYGITSHGLAFNIDPDLNY--------FKHI--------VPCGIADKDVTSLRRETGAVRIFNTLEP  203 (224)
Q Consensus       152 i~~~vt~HG~aLNv~~dl~~--------f~~I--------~pCGl~~~~vTSL~~~lg~~~~~~~v~~  203 (224)
                      +++++++||++||+++|++.        |..+        .+||+.+.+||||+++++.+++++++++
T Consensus       169 ~~~~~~lhh~sl~v~~dl~~~~~~l~~~~~~~l~~~~~k~~~~gi~~~~VtsL~~~l~~~~~~~~v~~  236 (288)
T 2p0l_A          169 RIKNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIMANLSDLLDCPMTVEDVID  236 (288)
T ss_dssp             EETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCCTTSBCCHHHHTTCCCCHHHHHH
T ss_pred             EeCCEEEEEEEEEecCCHHHHHHHHHHHHHHhcCCccccccccccchhheeeHHHHcCCCCCHHHHHH
Confidence            99999999999999999987        6654        4689999999999998898899999988


No 6  
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=100.00  E-value=4.5e-38  Score=284.90  Aligned_cols=198  Identities=17%  Similarity=0.198  Sum_probs=168.6

Q ss_pred             eEEEEcCcccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCceeEe
Q 027374            7 LQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDITFH   86 (224)
Q Consensus         7 ~~~~~lG~~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~iTyH   86 (224)
                      +...-.+..+-...+++++.+.+...  ..+++|+|+||||+||+|++++..+.+ +.+.|++.||+|+|++|||++|||
T Consensus        13 ~~~~~~~~~d~~~nlAlee~Ll~~~~--~~~~~L~l~~~~p~v~iG~~q~~~~ev-~~~~~~~~gi~vvRR~sGGgaVyH   89 (341)
T 1vqz_A           13 MKYIINHSNDTAFNIALEEYAFKHLL--DEDQIFLLWINKPSIIVGRHQNTIEEI-NRDYVRENGIEVVRRISGGGAVYH   89 (341)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHHHCT--TCSEEEEEECCSSEEEECTTCCGGGTB-CHHHHHHHTCEEEECSSCSCCEEE
T ss_pred             eeEEeCCCCCHHHHHHHHHHHHHhcC--CCCCEEEEEcCCCEEEECCCCChhhhh-CHHHHHHcCCcEEEECCCCCeEEE
Confidence            44555666777888999999988754  357899999999999999999977655 457899999999999999999999


Q ss_pred             CCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEeceeeeccEEEeeeeeecc
Q 027374           87 GPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYGITSHGLAFNID  166 (224)
Q Consensus        87 gPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~i~~~vt~HG~aLNv~  166 (224)
                      ||||+ .|+++..+....++ + ++.++++++++|+.+||+|. . ++.+|||+++||||++|.++++++++||.+||++
T Consensus        90 d~G~l-~ys~i~~~~~~~~~-~-y~~l~~~ii~aL~~lGi~a~-~-~gr~Di~v~grKIsG~Aqr~~~~~~lhhgtllvd  164 (341)
T 1vqz_A           90 DLNNL-NYTIISKEDENKAF-D-FKSFSTPVINTLAQLGVKAE-F-TGRNDLEIDGKKFCGNAQAYINGRIMHHGCLLFD  164 (341)
T ss_dssp             CTTEE-EEEEEEECCTTCCC-S-HHHHHHHHHHHHHHTTCCEE-E-ETTTEEEETTEEEEEEEEEEETTEEEEEEEEESS
T ss_pred             CCCce-EEEEEEcCcccCCc-c-HHHHHHHHHHHHHHcCCeEE-E-CCCCCEEEeCEEEEEEEEEEECCEEEEEEEEEec
Confidence            99996 99999877643356 5 58999999999999999994 3 5889999999999999999999999999999999


Q ss_pred             CCccccc---cccCCCCCCCc-------eeeehhhhCCCCCcccccc-h-HHHHHHHH
Q 027374          167 PDLNYFK---HIVPCGIADKD-------VTSLRRETGAVRIFNTLEP-L-DSHKKNFI  212 (224)
Q Consensus       167 ~dl~~f~---~I~pCGl~~~~-------vTSL~~~lg~~~~~~~v~~-~-~~~~~~f~  212 (224)
                      +|++.|.   .+.|||+.++.       ||||+++++.+++++++++ + ..|.+.|.
T Consensus       165 ~Dl~~~~~~L~~~~~k~~~kgv~s~~~~VtsL~~~l~~~~~~~~v~~~l~~~f~~~~~  222 (341)
T 1vqz_A          165 VDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYP  222 (341)
T ss_dssp             CCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHhCCCccchhhcccccchhhheeHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence            9999986   56799997764       9999998888999999998 2 44544443


No 7  
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=100.00  E-value=3.5e-37  Score=278.48  Aligned_cols=198  Identities=14%  Similarity=0.138  Sum_probs=165.6

Q ss_pred             eeEEEEcCcccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCceeE
Q 027374            6 SLQIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDITF   85 (224)
Q Consensus         6 ~~~~~~lG~~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~iTy   85 (224)
                      .+++++.+..+-...+++++.+.+....  .+++|++.||+|+||+|++++..+.+ +.+.|++.||+|+|++|||++||
T Consensus         2 ~~r~i~~~~~d~~~nlA~ee~Ll~~~~~--~~~~l~l~~~~p~v~iG~~q~~~~e~-~~~~~~~~gi~vvRR~sGGgaVy   78 (337)
T 3a7r_A            2 TLRLLISDSYDPWFNLAVEECIFRQMPA--TQRVLFLWRNADTVVIGRAQNPWKEC-NTRRMEEDNVRLARRSSGGGAVF   78 (337)
T ss_dssp             CEEEEEECCCCHHHHHHHHHHHHHHCCT--TCEEEEEECCSSEEEECTTCCHHHHS-CHHHHHHTTCEEEECSSCSCCEE
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCEEEECCCCChhHhh-CHHHHHHcCCeEEEEcCCCccEE
Confidence            4677777778888899999999887543  36799999999999999999876554 45789999999999999999999


Q ss_pred             eCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEe---cC-CeEEEeceeeeccEEEeee
Q 027374           86 HGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWV---GD-RKIGAIGVRIQYGITSHGL  161 (224)
Q Consensus        86 HgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv---~~-rKIasiGv~i~~~vt~HG~  161 (224)
                      |||||| .|+++..+.. .+   | +.++++++++|+.+||+|. . .+.+|||+   ++ ||||++|.++++++++||.
T Consensus        79 Hd~G~l-~ys~i~~~~~-~~---y-~~l~~~ii~~L~~lGi~a~-~-~g~~di~v~~~~g~rKIsG~Aqr~~~~~~lhhg  150 (337)
T 3a7r_A           79 HDLGNT-CFTFMAGKPE-YD---K-TISTSIVLNALNALGVSAE-A-SGRNDLVVKTVEGDRKVSGSAYRETKDRGFHHG  150 (337)
T ss_dssp             ECTTEE-EEEEEEETTT-CC---H-HHHHHHHHHHHHHTTCCEE-E-ETTTEEEECCTTSCEEEEEEEEEECSSEEEEEE
T ss_pred             ECCCcE-EEEEEECCcc-cC---H-HHHHHHHHHHHHHcCCeEE-E-CCCCcEEEEeCCCceEEEEEEEEEECCEEEEEE
Confidence            999999 9999987653 33   5 7899999999999999995 3 47899999   88 9999999999999999999


Q ss_pred             eeeccCCcccc---ccccCCCCCCC-------ceeeehhhhCCCCCcccccc-h-HHHHHHHHhhh
Q 027374          162 AFNIDPDLNYF---KHIVPCGIADK-------DVTSLRRETGAVRIFNTLEP-L-DSHKKNFIKIS  215 (224)
Q Consensus       162 aLNv~~dl~~f---~~I~pCGl~~~-------~vTSL~~~lg~~~~~~~v~~-~-~~~~~~f~~~~  215 (224)
                      +||+++|++.+   ..+.|||+.++       +||||+++++ .++++++++ + ..|.+.|...+
T Consensus       151 tll~~~dl~~l~~~l~~~~~~~~~kgv~sv~~~vt~L~~~~~-~~~~~~v~~~l~~~f~~~~~~~~  215 (337)
T 3a7r_A          151 TLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLP-GITHEQVCEAITEAFFAHYGERV  215 (337)
T ss_dssp             EEESSCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCT-TCCHHHHHHHHHHHHHHHHTCCC
T ss_pred             EEEecCCHHHHHHHhcCChhhhhhcCCCchhhheeEHHHhCC-CCCHHHHHHHHHHHHHHHcCCCC
Confidence            99999999764   47789999765       4688887655 489999988 3 45666555433


No 8  
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=100.00  E-value=3.1e-34  Score=260.09  Aligned_cols=196  Identities=11%  Similarity=0.106  Sum_probs=159.3

Q ss_pred             EEEEcCcccHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCeeeccCCCCCCCCCccHHHHhhcCCeEEEEecCCceeEeC
Q 027374            8 QIWRLGIVNYSDALKLQEKLVSDRKIHKISDTLLSLQHPPTYTLGKRRTDHNLLISEAELKKLGAELHYTQRGGDITFHG   87 (224)
Q Consensus         8 ~~~~lG~~~y~~~~~~q~~~~~~~~~~~~~~~lll~eH~PvyT~Gr~~~~~~~l~~~~~l~~~gi~v~~~~RGG~iTyHg   87 (224)
                      .+++.+..+-...+++++.+.+.... ..+++|+|+||+|+||+|++++....+ +.+.|++.||+|+|++|||++||||
T Consensus         6 ~~i~~~~~d~~~nlAlee~Ll~~~~~-~~~~~l~l~~~~p~v~iG~~q~~~~e~-~~~~~~~~gi~vvRR~sGGgaVyHd   83 (347)
T 2e5a_A            6 LILQSISNDVYHNLAVEDWIHDHMNL-EGKPVLFLWRNSPTVVIGRHQNPWQEC-NLNLMREEGVKLARRRSGGGTVYHD   83 (347)
T ss_dssp             EEEEESCCCHHHHHHHHHHHHHHCCC-TTCCEEEEECCSSEEEECTTCCHHHHS-CHHHHHTTTCEEEECSSCSCCEEEC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHhccc-CCCCEEEEEcCCCEEEECCCCCchhhh-CHHHHHHCCCeEEEECCCCCcEEEC
Confidence            45555667888889999999887543 357899999999999999999876554 4578999999999999999999999


Q ss_pred             CCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcC--CcCCCCCCCCCeEEecC-CeEEEeceeeeccEEEeeeeee
Q 027374           88 PHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYG--VKACPGQKGETGIWVGD-RKIGAIGVRIQYGITSHGLAFN  164 (224)
Q Consensus        88 PGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~g--i~a~~~~~~~~GVwv~~-rKIasiGv~i~~~vt~HG~aLN  164 (224)
                      ||| +.|+++..+.. .+   | ..++++++++|+.+|  |+|+ . ++.+|||++| ||||++|.++++++++|+.+||
T Consensus        84 ~G~-l~ys~i~~~~~-~~---~-~~~~~~ii~~L~~lG~~i~a~-~-~g~~di~v~g~~KIsG~Aq~~~~~~~lhhgtll  155 (347)
T 2e5a_A           84 MGN-INLTFFTTKKK-YD---R-MENLKLVVRALKAVHPHLDVQ-A-TKRFDLLLDGQFKISGTASKIGRNAAYHHCTLL  155 (347)
T ss_dssp             TTE-EEEEEEECGGG-CC---H-HHHHHHHHHHHHHHSTTCCEE-E-CTTSCEEETTTEEEECEEEEECSSCEEEEEEEE
T ss_pred             CCc-EEEEEEecccc-CC---H-HHHHHHHHHHHHHhCCceEEE-E-CCCCcEEECCCcEEEEEeEEeeCCeEEEEEEEE
Confidence            999 79999987543 33   3 367999999999999  9994 3 5889999998 9999999999999999999999


Q ss_pred             ccCCccc---cccccCCCCCCCceeeehh------hhCCCCCcccccc-h-HHHHHHHHh
Q 027374          165 IDPDLNY---FKHIVPCGIADKDVTSLRR------ETGAVRIFNTLEP-L-DSHKKNFIK  213 (224)
Q Consensus       165 v~~dl~~---f~~I~pCGl~~~~vTSL~~------~lg~~~~~~~v~~-~-~~~~~~f~~  213 (224)
                      +++|++.   +..+.|||+.++.++|+.+      +++.+++++++++ + ..|.+.|..
T Consensus       156 ~~~d~~~l~~~l~~~~~~~~~kgv~Sv~~~v~~L~~~~~~~~~~~v~~~l~~~f~~~~~~  215 (347)
T 2e5a_A          156 CGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQI  215 (347)
T ss_dssp             SSCCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             EecCHHHHHHHHccCchhhhhhcccchHHhhccHHHhCCCCCHHHHHHHHHHHHHHHhCC
Confidence            9999864   4566799998765555542      2456788899888 3 556666653


No 9  
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=98.43  E-value=5e-07  Score=77.31  Aligned_cols=110  Identities=15%  Similarity=0.096  Sum_probs=78.6

Q ss_pred             ecCCceeEeCCCceEEEEeeecCCCC--CCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEeceeeecc
Q 027374           78 QRGGDITFHGPHQAILYPIISLRDIG--LGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQYG  155 (224)
Q Consensus        78 ~RGG~iTyHgPGQLV~Ypil~l~~~~--~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~i~~~  155 (224)
                      -|.|...+--||.|....++......  ...-.++-.+  +++++|+.+|++.  +.+-+|+|+++++|||+|=+.....
T Consensus        47 GR~Gr~W~Sp~G~l~~S~~l~p~~~~~~~~~l~l~~al--Av~~al~~~~~~~--~iKWPNDi~~~gkKl~GIL~E~~~~  122 (235)
T 2dxu_A           47 GALNRKWESPEGGLWLSIVLSPKVPQKDLPKIVFLGAV--GVVETLKEFSIDG--RIKWPNDVLVNYKKIAGVLVEGKGD  122 (235)
T ss_dssp             CGGGCBCCCCTTSEEEEEEECCCSCGGGGGGHHHHHHH--HHHHHHHHTTCCC--EEETTTEEEETTEEEEEEEEEECSS
T ss_pred             CCCcCcccCCCCCeEEEEEeecCCCHHHHHHHHHHHHH--HHHHHHHHhCCCe--eeeCCCEEEECCEEEEEEEEeecCC
Confidence            36667766677877666666432211  1222344444  7888999998876  3678999999999999998887555


Q ss_pred             EEEeeeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccc
Q 027374          156 ITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEP  203 (224)
Q Consensus       156 vt~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~  203 (224)
                      ...=|+.|||+++   |    |-    . .|||..+.+.+++.+++-.
T Consensus       123 ~vViGiGiNv~~~---~----p~----~-atsL~~~~~~~~~r~~ll~  158 (235)
T 2dxu_A          123 KIVLGIGLNVNNK---V----PN----G-ATSMKLELGSEVPLLSVFR  158 (235)
T ss_dssp             CEEEEEEECSSSC---C----CT----T-BCCHHHHHTSCCCHHHHHH
T ss_pred             EEEEEEEEEeCCC---C----CC----c-hhhHHHhhCCCCCHHHHHH
Confidence            6778999999987   2    21    1 9999988888888776655


No 10 
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=98.41  E-value=1.8e-06  Score=73.64  Aligned_cols=113  Identities=13%  Similarity=0.062  Sum_probs=73.0

Q ss_pred             cCCceeEeCCCceEEEEeeecCCCCC--CHHHHHHHHHHHHHHHHHhc-CCcCCCCCCCCCeEEecCCeEEEeceeeecc
Q 027374           79 RGGDITFHGPHQAILYPIISLRDIGL--GARNYVEKLESTMIEIASLY-GVKACPGQKGETGIWVGDRKIGAIGVRIQYG  155 (224)
Q Consensus        79 RGG~iTyHgPGQLV~Ypil~l~~~~~--~~~~yv~~Le~~vi~~l~~~-gi~a~~~~~~~~GVwv~~rKIasiGv~i~~~  155 (224)
                      |.|...+--||.|....++... ...  ..-.++-.+  +++++|+.+ |++.  +.+-+|+|+++++|||+|=+.....
T Consensus        40 R~Gr~W~Sp~G~l~~S~~l~p~-~~~~~~~lsl~~~l--Av~~al~~~~~~~~--~iKWPNDI~~~gkKl~GIL~E~~~~  114 (233)
T 2eay_A           40 RLGRKWLSQEGGLYFSFLLNPK-EFENLLQLPLVLGL--SVSEALEEITEIPF--SLKWPNDVYFQEKKVSGVLCELSKD  114 (233)
T ss_dssp             ---------CCEEEEEEEECTT-TCCCTTHHHHHHHH--HHHHHHHHHHCCCC--EEETTTEEEETTEEEEEEEEEEETT
T ss_pred             CCCCeeeCCCCCcEEEEEEcCC-CHHHHHHHHHHHHH--HHHHHHHHhcCCCc--cEeCcceEEECCeEEEEEEEEeecC
Confidence            5666666777866555566443 222  233344444  888899886 8876  3678999999999999998876544


Q ss_pred             EEEeeeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccc
Q 027374          156 ITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEP  203 (224)
Q Consensus       156 vt~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~  203 (224)
                      ...=|+.|||+.+  .    .|-.++ ...|||..+.+.+++.+++-.
T Consensus       115 ~~ViGIGiNv~~~--~----~p~~~~-~~atsL~~~~~~~~~r~~ll~  155 (233)
T 2eay_A          115 KLIVGIGINVNQR--E----IPEEIK-DRATTLYEITGKDWDRKEVLL  155 (233)
T ss_dssp             EEEEEEEEECSCC--C----CCTTTT-TTBCCHHHHHSSCCCHHHHHH
T ss_pred             CCEEEEEEEcccc--c----Ccchhh-hhhhhhHHhHCCCCCHHHHHH
Confidence            4478999999972  2    233342 469999988898888777655


No 11 
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=98.30  E-value=2.8e-06  Score=75.84  Aligned_cols=119  Identities=10%  Similarity=0.014  Sum_probs=74.0

Q ss_pred             ecCCceeEeCCC-ceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhc-CCcCCCCCCCCCeEEecCCeEEEeceeeec-
Q 027374           78 QRGGDITFHGPH-QAILYPIISLRDIGLGARNYVEKLESTMIEIASLY-GVKACPGQKGETGIWVGDRKIGAIGVRIQY-  154 (224)
Q Consensus        78 ~RGG~iTyHgPG-QLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~-gi~a~~~~~~~~GVwv~~rKIasiGv~i~~-  154 (224)
                      -|.|..++--|| .|....++...........+--..--+++++|+.+ |++.  ..+-+|+|+++++|||+|=+.... 
T Consensus       121 GR~GR~W~Sp~G~~L~~S~~l~p~~~~~~~~~lsl~~avAv~~al~~~~~~~~--~iKWPNDI~~~gkKl~GIL~E~~~~  198 (323)
T 3rkx_A          121 GRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLFIALGIRDAIQHFSQDEV--KVKWPNDIYIDNGKVCGFLTEMVAN  198 (323)
T ss_dssp             ---------CTTCEEEEEEEECCCCCTTSGGGHHHHHHHHHHHHHHTTCSSCE--EEETTTEEEETTEEEEEEEEEEEEC
T ss_pred             CCCCCeeeCCCCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHHhcCCce--EEeCCCeEEECCEEEEEEEeEeeeC
Confidence            477888888889 56555555433221122222223333788899887 7776  367899999999999998776532 


Q ss_pred             --c--EEEeeeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccc
Q 027374          155 --G--ITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEP  203 (224)
Q Consensus       155 --~--vt~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~  203 (224)
                        .  ...=|+.|||+++.+.|    |-.++ ...|||..+.|.+++.+++-.
T Consensus       199 ~~~~~~vViGIGiNv~~~~~~~----p~~l~-~~atsL~~~~g~~~~r~~ll~  246 (323)
T 3rkx_A          199 NDGIEAIICGIGINLTQQLENF----DESIR-HRATSIQLHDKNKLDRYQFLE  246 (323)
T ss_dssp             SSSEEEEEEEEEEECSCCGGGS----CTTTG-GGBCCSGGGCSSCCCHHHHHH
T ss_pred             CCCCCEEEEEEEEEecCCcccC----CcccC-cceeeHhhhhCCCCCHHHHHH
Confidence              2  34569999999864433    44443 468999988888888777655


No 12 
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=98.12  E-value=5.7e-06  Score=70.70  Aligned_cols=113  Identities=17%  Similarity=0.153  Sum_probs=79.2

Q ss_pred             cCCceeEeCCCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhc-CCcCCCCCCCCCeEEecC----CeEEEeceeee
Q 027374           79 RGGDITFHGPHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLY-GVKACPGQKGETGIWVGD----RKIGAIGVRIQ  153 (224)
Q Consensus        79 RGG~iTyHgPGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~-gi~a~~~~~~~~GVwv~~----rKIasiGv~i~  153 (224)
                      |.|...+--||.|....++....  ......--..--+++++|+.+ |++.  +.+-+|+|++++    +|||+|=+...
T Consensus        40 R~Gr~W~Sp~G~l~~S~~l~p~~--~~~~~l~l~~~lAv~~al~~~~~~~~--~iKWPNDi~~~g~~~~kKl~GIL~E~~  115 (237)
T 2ej9_A           40 RWGRVWYSDEGGLYFSMVLDSKL--YNPKVINLLVPICIIEVLKNYVDKEL--GLKFPNDIMVKVNDNYKKLGGILTELT  115 (237)
T ss_dssp             GGGCBCCCCTTSEEEEEEEETTS--SCHHHHHHHHHHHHHHHHTTTCCSCE--EEETTTEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCCeeeCCCCCeEEEeEEcccc--CCHHHHHHHHHHHHHHHHHHhhCCCc--ceeCCCEEEECCCcCccEeeEEEEecC
Confidence            55666666678776666665422  222222222333777889887 7766  467899999999    99999988776


Q ss_pred             ccEEEeeeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccc
Q 027374          154 YGITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEP  203 (224)
Q Consensus       154 ~~vt~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~  203 (224)
                      .....=|+.|||+++   |    |-.+. ...|||..+.+.+++.+++-.
T Consensus       116 ~~~vViGiGiNv~~~---~----p~~l~-~~atsL~~~~~~~~~r~~ll~  157 (237)
T 2ej9_A          116 DDYMIIGIGINVNNQ---I----RNEIR-EIAISLKEITGKELDKVEILS  157 (237)
T ss_dssp             SSEEEEEEEECSSSC---C----CGGGG-GTBCCHHHHHSSCCCHHHHHH
T ss_pred             CCeEEEEEEEecCCC---C----cchhh-hhhccHhHhHCCCCCHHHHHH
Confidence            667788999999987   2    32332 468999988888887776655


No 13 
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=98.10  E-value=1.2e-05  Score=71.39  Aligned_cols=118  Identities=19%  Similarity=0.108  Sum_probs=69.0

Q ss_pred             ecCCceeEeCCC-ceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEeceeeec--
Q 027374           78 QRGGDITFHGPH-QAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGVRIQY--  154 (224)
Q Consensus        78 ~RGG~iTyHgPG-QLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv~i~~--  154 (224)
                      -|.|..++--|| .|....++........+...--..--+++++|+.+|++. .+.+-+|+|+++++|||+|=+....  
T Consensus       117 GR~gr~W~Sp~g~~l~~S~~l~~~~~~~~~~~l~l~~~~av~~al~~~~~~~-~~iKWPNDi~~~g~Kl~GIL~E~~~~~  195 (321)
T 1bia_A          117 GRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRKLGADK-VRVKWPNDLYLQDRKLAGILVELTGKT  195 (321)
T ss_dssp             --------CCTTSEEEEEEEEEECC-CCCTHHHHHHHHHHHHHHHHHTTCTT-CEEETTTEEEETTEEEEEEEEEEEC--
T ss_pred             CCCCCcccCCCCCCEEEEEEEccCCChHHHhhHHHHHHHHHHHHHHHhCCCC-ccEeCcceeeECCeeEEEEEEEeeecC
Confidence            377778777788 566666665432222222222233348889999999853 3578999999999999999776532  


Q ss_pred             ---cEEEeeeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccc
Q 027374          155 ---GITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEP  203 (224)
Q Consensus       155 ---~vt~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~  203 (224)
                         ....=|+.|||+++. +|    |-.++ ...|||.+ .|..++.+++-.
T Consensus       196 ~~~~~~viGiGiNv~~~~-~~----~~~~~-~~atsL~~-~~~~~~r~~ll~  240 (321)
T 1bia_A          196 GDAAQIVIGAGINMAMRR-VE----ESVVN-QGWITLQE-AGINLDRNTLAA  240 (321)
T ss_dssp             --CEEEEEEEEEECCC-----------------CCCTTT-TTCCCCHHHHHH
T ss_pred             CCCcEEEEEEEEecCCCc-cc----cchhc-cccccHHh-cCCCCCHHHHHH
Confidence               245679999999864 22    22232 45899987 677777766654


No 14 
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=98.05  E-value=1.8e-05  Score=69.04  Aligned_cols=115  Identities=13%  Similarity=0.066  Sum_probs=76.8

Q ss_pred             ecCCceeEeCCC-ceEEEEeeecCCCCC-CHHHHHHHHHHHHHHHHH---hc-CCcCCCCCCCCCeEEecCCeEEEecee
Q 027374           78 QRGGDITFHGPH-QAILYPIISLRDIGL-GARNYVEKLESTMIEIAS---LY-GVKACPGQKGETGIWVGDRKIGAIGVR  151 (224)
Q Consensus        78 ~RGG~iTyHgPG-QLV~Ypil~l~~~~~-~~~~yv~~Le~~vi~~l~---~~-gi~a~~~~~~~~GVwv~~rKIasiGv~  151 (224)
                      -|.|..++--|| .|....++....... .....--..--+++++|+   .+ |++.  ..+-+|+|++++||||+|=+.
T Consensus        72 GR~GR~W~Sp~G~~L~~S~~l~~~~~~~~~~~~lsl~~~lAv~~aL~~~~~~~~~~~--~iKWPNDI~~~gkKl~GIL~E  149 (270)
T 3rux_A           72 GRHGRGWAATARAQIILSVGVRVVDVPVQAWGWLSLAAGLAVLDSVAPLIAVPPAET--GLKWPNDVLARGGKLAGILAE  149 (270)
T ss_dssp             CGGGCEECCCTTSEEEEEEEEECTTSCGGGTHHHHHHHHHHHHHHHGGGSSSCCSSC--EEETTTEEEETTEEEEEEEEE
T ss_pred             CCCCCeeeCCCCCCeEEEEEEccCCCChHHHHHHHHHHHHHHHHHHHHhcccCCCce--EEECCCeEEECCEEEEEEEEE
Confidence            477888888889 666666666542221 122222222337888998   64 6766  367899999999999999887


Q ss_pred             eeccEEEeeeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccc
Q 027374          152 IQYGITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEP  203 (224)
Q Consensus       152 i~~~vt~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~  203 (224)
                      .......=|+.|||+++...|        +....|||..+.+.. +.+++-.
T Consensus       150 ~~~~~vViGIGiNv~~~~~~~--------~~~~atSL~~~~~~~-~r~~ll~  192 (270)
T 3rux_A          150 VAQPFVVLGVGLNVTQAPEEV--------DPDATSLLDLGVAAP-DRNRIAS  192 (270)
T ss_dssp             EETTEEEEEEEEESSCCHHHH--------CTTBCCTGGGTCSSC-CHHHHHH
T ss_pred             eeCCeEEEEEEEeccCCcccc--------CchhhccHHHhcCCC-CHHHHHH
Confidence            655567789999999874332        124789999754443 6555544


No 15 
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=98.03  E-value=2.7e-05  Score=66.30  Aligned_cols=113  Identities=12%  Similarity=-0.019  Sum_probs=71.6

Q ss_pred             CceeEeCCCc-eEEEEeeecCCCC--CCHHHHHHHHHHHHHHHHHhcCCcC-CCCCCCCCeEEecCCeEEEeceeeec--
Q 027374           81 GDITFHGPHQ-AILYPIISLRDIG--LGARNYVEKLESTMIEIASLYGVKA-CPGQKGETGIWVGDRKIGAIGVRIQY--  154 (224)
Q Consensus        81 G~iTyHgPGQ-LV~Ypil~l~~~~--~~~~~yv~~Le~~vi~~l~~~gi~a-~~~~~~~~GVwv~~rKIasiGv~i~~--  154 (224)
                      |-+.+-.||. |....++......  ...-.++-.+  ++.++|+.++... ..+.+-+|+|++++||||+|=+....  
T Consensus        38 g~vv~A~~g~~L~~S~~l~~~~~~~~~~~lsl~~al--Av~~aL~~~~~~~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~  115 (235)
T 3bfm_A           38 GLVVYELGTDVLRAALVLAPEVPLAKAMAMLPVCGV--GFQNALGALAPPEVAVHLDWNGALRINGARCGRLRIAASTDD  115 (235)
T ss_dssp             TEEEEEECSSEEEEEEEECCSSCHHHHTTHHHHHHH--HHHHHHHHHSCTTCCEEECTTSEEEETTEEEEEEEEEESCCC
T ss_pred             CEEEEEcCCCCEEEEEEecCCCCHHHHHHHHHHHHH--HHHHHHHHhcCCCcceEecCCCeEEECCeEEEEEEEEeeccC
Confidence            3444444774 5455555432110  0111233444  7788898886531 12467899999999999999777543  


Q ss_pred             -----cEEEeeeeeeccCCccccccccCCCCCCCceeeehhhhCCCCCcccccc
Q 027374          155 -----GITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRETGAVRIFNTLEP  203 (224)
Q Consensus       155 -----~vt~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~lg~~~~~~~v~~  203 (224)
                           ....=|+.|||+...  .+     ++ ....|||.++.+..++.+++-.
T Consensus       116 ~~~~~~~vViGIGiNv~~~~--~~-----~~-~~~atsL~~~~~~~~~r~~ll~  161 (235)
T 3bfm_A          116 PDTQPDWLVVGLDLPLWPEG--DG-----GE-TPDETALYAEGCADVAAPRLLE  161 (235)
T ss_dssp             TTSCCSCEEEEEEEESSCCC--SS-----CC-CCCSCCGGGTTCTTCCHHHHHH
T ss_pred             CCCCccEEEEEEEEEcCCCC--cc-----cc-cccccchhHhhCCCCCHHHHHH
Confidence                 256789999999763  12     33 2468999988888777766655


No 16 
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=85.51  E-value=2.5  Score=34.70  Aligned_cols=86  Identities=21%  Similarity=0.276  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEE-eceeeeccEEEeeeeeeccCCccccccccCCCCCCCceeeehhh
Q 027374          113 LESTMIEIASLYGVKACPGQKGETGIWVGDRKIGA-IGVRIQYGITSHGLAFNIDPDLNYFKHIVPCGIADKDVTSLRRE  191 (224)
Q Consensus       113 Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIas-iGv~i~~~vt~HG~aLNv~~dl~~f~~I~pCGl~~~~vTSL~~~  191 (224)
                      |-..+.+.|.++|++.. |  .-.++|+++||+.- |...-.-..-.| +++||+.+=.      |-   +....+|.+ 
T Consensus        91 lv~i~kE~L~~~g~~~~-R--~GDDLy~~~~KLSVSIAt~s~vS~kIH-~GiNV~s~g~------P~---~V~aigL~d-  156 (190)
T 2ddz_A           91 LIARLVELLWNYGIEAS-R--RGDDIYVNGRKLSISIATVSPVSIKIH-IGLNVKTVGV------PP---GVDAIGLEE-  156 (190)
T ss_dssp             HHHHHHHHHHTTTCCEE-E--ETTEEEETTEECEEEEEEECSSCEEEE-EEEESCCSSC------CS---SSCBCCHHH-
T ss_pred             HHHHHHHHHHHcCCeee-e--ccCeeeECCCEEEEEEEecCcchheEE-EEEeecccCC------CC---CccccCHHH-
Confidence            44455568899999983 4  45899999999753 332222234445 6899988732      22   245667775 


Q ss_pred             hCCCCCcccccc-h-HHHHHHHHhh
Q 027374          192 TGAVRIFNTLEP-L-DSHKKNFIKI  214 (224)
Q Consensus       192 lg~~~~~~~v~~-~-~~~~~~f~~~  214 (224)
                      +|.  ++.++.+ + ..+.+++.++
T Consensus       157 lGi--~i~~~~~~i~~~y~~E~~~I  179 (190)
T 2ddz_A          157 LGI--DPTEFMERSAKALVEEIEKV  179 (190)
T ss_dssp             HTC--CHHHHHHHHHHHHHHHHHHH
T ss_pred             cCC--CHHHHHHHHHHHHHHHHHHH
Confidence            785  5555555 2 5566666544


No 17 
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=50.69  E-value=26  Score=30.41  Aligned_cols=87  Identities=22%  Similarity=0.421  Sum_probs=54.3

Q ss_pred             EEEEecCCce--eEeC-CCceEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEecCCeEEEece
Q 027374           74 LHYTQRGGDI--TFHG-PHQAILYPIISLRDIGLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWVGDRKIGAIGV  150 (224)
Q Consensus        74 v~~~~RGG~i--TyHg-PGQLV~Ypil~l~~~~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv~~rKIasiGv  150 (224)
                      +.+..||-++  .|.| .|+.+..-++|+-. ..+...|+++|++++-+   .+|....     .               
T Consensus       205 l~~~~R~lD~~~r~~~~~~~~~l~vLLPlT~-~~~a~~~~~Ri~~~l~~---~~g~~~~-----l---------------  260 (298)
T 4eu0_A          205 LEGSQRGLDVQLRLRNDEGRRVLLVLLPLTS-AEGSQGYLQRLRILFAE---RFGQARE-----L---------------  260 (298)
T ss_dssp             HHHTCCTTCEEEEEECTTSCEEEEEEETTCC-HHHHHHHHHHHHHHHHH---HSCTTCC-----T---------------
T ss_pred             HHhcccccceEEEecCCCCCeEEEEECCCCC-hHHHHHHHHHHHHHHHH---HhCCCcc-----c---------------
Confidence            3445566665  4556 78888888888865 35788999999998666   4663221     1               


Q ss_pred             eeeccEEEeeeeeeccCCcccccc--ccCCCCCCCce
Q 027374          151 RIQYGITSHGLAFNIDPDLNYFKH--IVPCGIADKDV  185 (224)
Q Consensus       151 ~i~~~vt~HG~aLNv~~dl~~f~~--I~pCGl~~~~v  185 (224)
                       ..-+|..|.+.+-=+...+.+..  +.-||+.+..+
T Consensus       261 -~~~~i~v~~~~~~~~~p~~~l~~~l~~~~~~~~~~~  296 (298)
T 4eu0_A          261 -ESLGVRIRQYELDAGNDRQALGHFLFNECGLNDQQV  296 (298)
T ss_dssp             -GGGTEEEEEEEECTTSCTTHHHCCCCCCSCCCTTTC
T ss_pred             -hhcceEEEEecCCCCCHHHHHHHHHHHhcCCccccc
Confidence             22234456555544444445544  26899887654


No 18 
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Probab=23.28  E-value=1.2e+02  Score=26.39  Aligned_cols=46  Identities=13%  Similarity=0.254  Sum_probs=28.8

Q ss_pred             EEeeecCCC-CCCHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCeEEe
Q 027374           94 YPIISLRDI-GLGARNYVEKLESTMIEIASLYGVKACPGQKGETGIWV  140 (224)
Q Consensus        94 Ypil~l~~~-~~~~~~yv~~Le~~vi~~l~~~gi~a~~~~~~~~GVwv  140 (224)
                      +.++||.-. +.+..+- ......+-+.|+++|+++...-.+..|+-|
T Consensus       136 ~lvfDLDP~~~~~f~~v-~~aA~~~r~~L~~lGL~~f~KTSGgkGlHV  182 (303)
T 2iru_A          136 RLVFDLDPGEGVMMAQL-AEVARAVRDLLADIGLVTFPVTSGSKGLHL  182 (303)
T ss_dssp             EEEEEEEECTTCCHHHH-HHHHHHHHHHHHTTTCCCEEEECSSSCEEE
T ss_pred             EEEEECCCCCCCCHHHH-HHHHHHHHHHHHHcCCccceEccCCCeEEE
Confidence            557899764 3454432 223344667999999998433357777655


Done!