BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027375
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 114/201 (56%), Gaps = 5/201 (2%)
Query: 29 SDPDPLQDVCIADLNAP-ISINGFPCKPASNVXXXXXXXXXXXXXXXXXV-FKRAVTFGD 86
SDPDPLQD C+ADL+ +S+NG CKP S AVT D
Sbjct: 1 SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 87 VFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIV---TTNNTFFS 143
V +P NT GVS+ R+D GG NPPH HPR TE G+V +G LLVGI+ + N +S
Sbjct: 61 VAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 144 KVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSISTIFDATPPVPNEVLT 203
+V+ G F+IPR L+HFQ NVG A + FN+QNPG+ T+F + PP+P VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 204 KSFRVGDDVINAIRAARAQSS 224
K+ RV V+ +++ A S
Sbjct: 181 KALRVEAGVVELLKSKFAGGS 201
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 114/201 (56%), Gaps = 5/201 (2%)
Query: 29 SDPDPLQDVCIADLNAP-ISINGFPCKPASNVXXXXXXXXXXXXXXXXXV-FKRAVTFGD 86
SDPDPLQD C+ADL+ +S+NG CKP S AVT D
Sbjct: 1 SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 87 VFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIV---TTNNTFFS 143
V +P NT GVS+ R+D GG NPPH HPR TE G+V +G LLVGI+ + N +S
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 144 KVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSISTIFDATPPVPNEVLT 203
+V+ G F+IPR L+HFQ NVG A + FN+QNPG+ T+F + PP+P VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 204 KSFRVGDDVINAIRAARAQSS 224
K+ RV V+ +++ A S
Sbjct: 181 KALRVEAGVVELLKSKFAGGS 201
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 154 bits (390), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 114/201 (56%), Gaps = 5/201 (2%)
Query: 29 SDPDPLQDVCIADLNAP-ISINGFPCKPASNVXXXXXXXXXXXXXXXXXV-FKRAVTFGD 86
+DPDPLQD C+ADL+ +S+NG CKP S AVT D
Sbjct: 1 TDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 87 VFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIV---TTNNTFFS 143
V +P NT GVS+ R+D GG NPPH HPR TE G+V +G LLVGI+ + N +S
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 144 KVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSISTIFDATPPVPNEVLT 203
+V+ G F+IPR L+HFQ NVG A + FN+QNPG+ T+F + PP+P VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 204 KSFRVGDDVINAIRAARAQSS 224
K+ RV V+ +++ A S
Sbjct: 181 KALRVEAGVVELLKSKFAGGS 201
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Query: 90 FPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTN-NTFFSKVLTP 148
PA+ G+S + L GI PH + VTRG V +V N F L
Sbjct: 359 LPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNXQGNAVFDGELRR 418
Query: 149 GMVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSISTIFDATPPVPNEVLTKSFRV 208
G + ++P+ V + G E +F T + VS I +F A +P+EVL+ S+ +
Sbjct: 419 GQLLVVPQNFVVAEQ--GGEQGLEYVVFKTHHNAVSSYIKDVFRA---IPSEVLSNSYNL 473
Query: 209 GDDVINAIR 217
G + ++
Sbjct: 474 GQSQVRQLK 482
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Query: 90 FPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTN-NTFFSKVLTP 148
PA+ G+S + L GI PH + VTRG V +V N F L
Sbjct: 358 LPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRR 417
Query: 149 GMVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSISTIFDATPPVPNEVLTKSFRV 208
G + ++P+ V + G E +F T + VS I +F A +P+EVL+ S+ +
Sbjct: 418 GQLLVVPQNFVVAEQ--GGEQGLEYVVFKTHHNAVSSYIKDVFRA---IPSEVLSNSYNL 472
Query: 209 GDDVINAIR 217
G + ++
Sbjct: 473 GQSQVRQLK 481
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Query: 88 FGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLT 147
+ FP ++G++ + L+ G I H H E V G + + + +
Sbjct: 44 YNFPV--SKGMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVD 101
Query: 148 PGMVFLIPRALVHFQLNVGNEPATFIPIFN--TQNPGVSDSISTIFDATP 195
G ++ PR H +G + A F+ +FN T + G + S++ TP
Sbjct: 102 KGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDGTFSEGATFSVTDWLSHTP 151
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 103 LDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQ 162
+ L+ G + H HP E V G + + + + L G V +P+ H
Sbjct: 239 IHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGYVPKGYGHAI 298
Query: 163 LNVGNEPATFIPIFNTQNPGVSDSISTIFDATPPVPNEVLTKSFRVGDDVINAI 216
N +P + +FN + D +ST + P+ VL +F++ ++ +
Sbjct: 299 RNSSQKPLDIVVVFNDGDYQSID-LSTWLASN---PSSVLGNTFQISPELTKKL 348
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 108 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGN 167
G + H HP E G + + ++ + G V +P A+ H+ N+G+
Sbjct: 267 GAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGD 326
Query: 168 EPATFIPIFN 177
EP F+ IF
Sbjct: 327 EPLVFLEIFK 336
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 108 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGN 167
G + H HP E G + + ++ + G V +P A+ H+ N+G+
Sbjct: 265 GAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGD 324
Query: 168 EPATFIPIFN 177
EP F+ IF
Sbjct: 325 EPLVFLEIFK 334
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 108 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGN 167
G + H HP E G + + ++ + G V +P A+ H+ N+G+
Sbjct: 267 GAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGD 326
Query: 168 EPATFIPIFN 177
EP F+ IF
Sbjct: 327 EPLVFLEIFK 336
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 108 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGN 167
G + H HP E G + + ++ + G V +P A+ H+ N+G+
Sbjct: 267 GAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGD 326
Query: 168 EPATFIPIFN 177
EP F+ IF
Sbjct: 327 EPLVFLEIFK 336
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 108 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGN 167
G + H HP E G + + ++ + G V +P A+ H+ N+G+
Sbjct: 267 GAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGD 326
Query: 168 EPATFIPIFN 177
EP F+ IF
Sbjct: 327 EPLVFLEIFK 336
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 108 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGN 167
G + H HP E G + + ++ + G V +P A+ H+ N+G+
Sbjct: 267 GAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGD 326
Query: 168 EPATFIPIFN 177
EP F+ IF
Sbjct: 327 EPLVFLEIFK 336
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 108 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGN 167
G + H HP E G + + ++ + G V +P A+ H+ N+G+
Sbjct: 262 GAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGD 321
Query: 168 EPATFIPIFNTQN 180
EP F+ IF +
Sbjct: 322 EPLVFLEIFKDDH 334
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 133 GIVTTNNTFFSKVL--TPGMVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSISTI 190
GI F K+L P I +AL H L GN P I +++ + DSI T
Sbjct: 276 GISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNAPGRDSQIPSSRYTKIRDSIKTK 335
Query: 191 FDATP-PVP 198
+DA P P+P
Sbjct: 336 YDAWPEPLP 344
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 133 GIVTTNNTFFSKVL--TPGMVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSISTI 190
GI F K+L P I +AL H L GN P I +++ + DSI T
Sbjct: 382 GISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNAPGRDSQIPSSRYTKIRDSIKTK 441
Query: 191 FDATP-PVP 198
+DA P P+P
Sbjct: 442 YDAWPEPLP 450
>pdb|1J58|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 27/70 (38%)
Query: 108 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGN 167
G H HP E G + ++ + G V +P A H+ N+G+
Sbjct: 267 GAXRELHWHPNTHEWQYYISGKARXTVFASDGHARTFNYQAGDVGYVPFAXGHYVENIGD 326
Query: 168 EPATFIPIFN 177
EP F+ IF
Sbjct: 327 EPLVFLEIFK 336
>pdb|4E2G|A Chain A, Crystal Structure Of Cupin Fold Protein Sthe2323 From
Sphaerobacter Thermophilus
pdb|4E2G|B Chain B, Crystal Structure Of Cupin Fold Protein Sthe2323 From
Sphaerobacter Thermophilus
pdb|4E2G|C Chain C, Crystal Structure Of Cupin Fold Protein Sthe2323 From
Sphaerobacter Thermophilus
pdb|4E2G|D Chain D, Crystal Structure Of Cupin Fold Protein Sthe2323 From
Sphaerobacter Thermophilus
pdb|4E2G|E Chain E, Crystal Structure Of Cupin Fold Protein Sthe2323 From
Sphaerobacter Thermophilus
pdb|4E2G|F Chain F, Crystal Structure Of Cupin Fold Protein Sthe2323 From
Sphaerobacter Thermophilus
pdb|4E2G|G Chain G, Crystal Structure Of Cupin Fold Protein Sthe2323 From
Sphaerobacter Thermophilus
pdb|4E2G|H Chain H, Crystal Structure Of Cupin Fold Protein Sthe2323 From
Sphaerobacter Thermophilus
Length = 126
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 88 FGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLT 147
F A+ + + L + ++ P H HP +AG+ GTL + I ++VL
Sbjct: 31 FAXQAIQGKNLXLNWVRIEPNTEXPAHEHPH-EQAGVXLEGTLELTIGEE-----TRVLR 84
Query: 148 PGMVFLIPRALVH 160
PG + IP + H
Sbjct: 85 PGXAYTIPGGVRH 97
>pdb|1X7N|A Chain A, The Crystal Structure Of Pyrococcus Furiosus
Phosphoglucose Isomerase With Bound
5-Phospho-D-Arabinonate And Manganese
pdb|1X8E|A Chain A, Crystal Structure Of Pyrococcus Furiosus Phosphoglucose
Isomerase Free Enzyme
pdb|1X8E|B Chain B, Crystal Structure Of Pyrococcus Furiosus Phosphoglucose
Isomerase Free Enzyme
Length = 190
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 114 HTHPRGTEAGIVT----RGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEP 169
H H + A + +G +L+ + + S + PG V +P H +N+G+EP
Sbjct: 89 HFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWIS--MEPGTVVYVPPYWAHRTVNIGDEP 146
Query: 170 ATFIPIF 176
F+ I+
Sbjct: 147 FIFLAIY 153
>pdb|1QXJ|A Chain A, Crystal Structure Of Native Phosphoglucose Isomerase From
Pyrococcus Furiosus
pdb|1QXJ|B Chain B, Crystal Structure Of Native Phosphoglucose Isomerase From
Pyrococcus Furiosus
pdb|1QXR|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With 5-Phosphoarabinonate
pdb|1QXR|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With 5-Phosphoarabinonate
pdb|1QY4|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Gluconate
6-Phosphate
pdb|1QY4|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Gluconate
6-Phosphate
Length = 189
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 114 HTHPRGTEAGIVT----RGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEP 169
H H + A + +G +L+ + + S + PG V +P H +N+G+EP
Sbjct: 88 HFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWIS--MEPGTVVYVPPYWAHRTVNIGDEP 145
Query: 170 ATFIPIF 176
F+ I+
Sbjct: 146 FIFLAIY 152
>pdb|2GC0|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With 5-Phospho-D-
Arabinonohydroxamate And Zinc
pdb|2GC0|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With 5-Phospho-D-
Arabinonohydroxamate And Zinc
pdb|2GC1|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Sorbitol 6-Phosphate
And Zinc
pdb|2GC1|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Sorbitol 6-Phosphate
And Zinc
pdb|2GC2|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Fructose 6-Phosphate
And Zinc
pdb|2GC2|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Fructose 6-Phosphate
And Zinc
pdb|2GC3|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Mannose 6-Phosphate
And Zinc
pdb|2GC3|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Mannose 6-Phosphate
And Zinc
Length = 188
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 114 HTHPRGTEAGIVT----RGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEP 169
H H + A + +G +L+ + + S + PG V +P H +N+G+EP
Sbjct: 89 HFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWIS--MEPGTVVYVPPYWAHRTVNIGDEP 146
Query: 170 ATFIPIF 176
F+ I+
Sbjct: 147 FIFLAIY 153
>pdb|1X82|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus With Bound 5-Phospho-D-Arabinonate
Length = 190
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 147 TPGMVFLIPRALVHFQLNVGNEPATFIPIF 176
PG V +P H +N+G+EP F+ I+
Sbjct: 124 EPGTVVYVPPYWAHRTVNIGDEPFIFLAIY 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,686,255
Number of Sequences: 62578
Number of extensions: 207249
Number of successful extensions: 362
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 25
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)