Query 027375
Match_columns 224
No_of_seqs 287 out of 1702
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 09:01:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 99.9 9.9E-27 2.1E-31 212.0 19.4 161 52-219 202-362 (367)
2 PLN00212 glutelin; Provisional 99.9 1E-24 2.3E-29 204.0 18.4 146 72-221 322-470 (493)
3 PF00190 Cupin_1: Cupin; Inte 99.9 4.9E-24 1.1E-28 170.3 12.1 134 67-213 2-143 (144)
4 TIGR03404 bicupin_oxalic bicup 99.9 3E-23 6.6E-28 189.1 17.6 145 64-219 38-185 (367)
5 smart00835 Cupin_1 Cupin. This 99.9 1.7E-20 3.6E-25 150.3 17.3 135 75-213 7-145 (146)
6 PLN00212 glutelin; Provisional 99.8 1.5E-19 3.3E-24 169.3 17.0 140 75-219 58-249 (493)
7 COG2140 Thermophilic glucose-6 99.8 7E-18 1.5E-22 141.4 12.6 150 60-221 49-201 (209)
8 PF07883 Cupin_2: Cupin domain 99.5 6.3E-14 1.4E-18 97.7 7.8 70 102-176 2-71 (71)
9 COG1917 Uncharacterized conser 99.4 1.2E-12 2.6E-17 102.6 11.6 85 89-178 34-118 (131)
10 COG0662 {ManC} Mannose-6-phosp 99.4 3.7E-12 8E-17 99.9 12.4 82 96-182 34-115 (127)
11 PRK13290 ectC L-ectoine syntha 99.4 3.8E-12 8.2E-17 99.9 12.0 82 96-184 33-115 (125)
12 PRK04190 glucose-6-phosphate i 99.3 3E-11 6.4E-16 101.2 13.6 88 92-179 62-157 (191)
13 COG3837 Uncharacterized conser 99.2 8.7E-11 1.9E-15 94.4 10.3 85 89-180 35-122 (161)
14 TIGR01479 GMP_PMI mannose-1-ph 99.2 3E-10 6.5E-15 107.0 12.8 78 97-179 375-452 (468)
15 PRK09943 DNA-binding transcrip 99.2 4.3E-10 9.3E-15 93.3 12.3 75 97-177 106-181 (185)
16 PRK11171 hypothetical protein; 99.1 1.6E-09 3.6E-14 95.1 15.3 77 96-177 59-136 (266)
17 PRK15460 cpsB mannose-1-phosph 99.1 5.5E-10 1.2E-14 105.4 12.6 78 96-178 383-460 (478)
18 PF01050 MannoseP_isomer: Mann 99.1 1.7E-09 3.6E-14 87.6 11.3 76 97-177 62-137 (151)
19 COG4101 Predicted mannose-6-ph 99.1 1.7E-09 3.6E-14 83.3 9.8 83 97-181 45-127 (142)
20 TIGR03214 ura-cupin putative a 99.1 1.7E-09 3.7E-14 94.7 11.3 73 97-175 178-251 (260)
21 TIGR03214 ura-cupin putative a 99.0 8.8E-09 1.9E-13 90.2 13.8 76 97-177 57-133 (260)
22 PRK11171 hypothetical protein; 99.0 5.2E-09 1.1E-13 91.9 11.0 75 97-177 183-258 (266)
23 PF06560 GPI: Glucose-6-phosph 98.7 2.9E-07 6.2E-12 76.6 12.0 86 93-178 45-146 (182)
24 PRK13264 3-hydroxyanthranilate 98.7 1.4E-07 3.1E-12 77.8 9.3 71 103-177 39-109 (177)
25 PF02041 Auxin_BP: Auxin bindi 98.7 2.4E-07 5.3E-12 74.1 10.1 90 91-184 39-133 (167)
26 TIGR03037 anthran_nbaC 3-hydro 98.6 3.7E-07 8.1E-12 74.2 9.6 67 106-176 36-102 (159)
27 PF02311 AraC_binding: AraC-li 98.6 3.9E-07 8.5E-12 69.3 8.8 66 107-178 12-77 (136)
28 PF11699 CENP-C_C: Mif2/CENP-C 98.5 1.8E-06 3.9E-11 63.3 9.6 72 97-174 11-83 (85)
29 PF12973 Cupin_7: ChrR Cupin-l 98.5 7E-07 1.5E-11 65.8 7.5 66 97-174 23-88 (91)
30 PRK10371 DNA-binding transcrip 98.4 9.8E-07 2.1E-11 78.6 9.3 60 102-167 30-89 (302)
31 PRK15457 ethanolamine utilizat 98.4 3.2E-06 6.9E-11 72.5 11.7 71 97-177 156-226 (233)
32 TIGR02451 anti_sig_ChrR anti-s 98.4 1.3E-06 2.8E-11 74.6 8.6 72 98-179 127-198 (215)
33 PF03079 ARD: ARD/ARD' family; 98.4 2.9E-06 6.3E-11 69.1 10.1 72 110-183 84-155 (157)
34 COG1791 Uncharacterized conser 98.3 5.6E-06 1.2E-10 67.7 10.1 74 112-187 89-162 (181)
35 PRK10296 DNA-binding transcrip 98.3 9E-06 2E-10 70.9 10.7 52 108-165 33-84 (278)
36 PRK13501 transcriptional activ 98.2 7.7E-06 1.7E-10 71.9 8.5 62 97-166 19-80 (290)
37 PRK13500 transcriptional activ 98.1 1.7E-05 3.7E-10 70.8 9.1 55 107-167 57-111 (312)
38 TIGR02297 HpaA 4-hydroxyphenyl 98.1 1.2E-05 2.7E-10 70.0 8.0 59 108-171 33-91 (287)
39 TIGR02272 gentisate_1_2 gentis 98.1 2.2E-05 4.8E-10 71.2 9.7 77 97-178 80-156 (335)
40 PF06339 Ectoine_synth: Ectoin 98.1 5.5E-05 1.2E-09 59.0 10.5 84 94-183 31-114 (126)
41 COG4297 Uncharacterized protei 98.1 7.4E-06 1.6E-10 64.8 5.6 67 107-176 51-118 (163)
42 PF05523 FdtA: WxcM-like, C-te 98.0 6.7E-05 1.4E-09 59.2 9.2 94 79-178 15-111 (131)
43 PRK13503 transcriptional activ 97.9 2.8E-05 6.2E-10 67.4 7.3 53 107-165 24-76 (278)
44 PF14499 DUF4437: Domain of un 97.9 3.8E-05 8.2E-10 67.0 7.8 72 97-173 35-106 (251)
45 PRK13502 transcriptional activ 97.9 5.4E-05 1.2E-09 66.0 8.8 56 106-167 26-81 (282)
46 COG3435 Gentisate 1,2-dioxygen 97.9 2.5E-05 5.5E-10 69.2 5.8 103 70-178 60-167 (351)
47 PF05899 Cupin_3: Protein of u 97.8 5.9E-05 1.3E-09 53.7 6.4 59 98-163 7-65 (74)
48 KOG2107 Uncharacterized conser 97.7 6.7E-05 1.5E-09 61.0 6.0 57 111-168 86-142 (179)
49 COG3257 GlxB Uncharacterized p 97.7 0.0004 8.7E-09 59.1 9.8 75 98-177 61-136 (264)
50 PF06052 3-HAO: 3-hydroxyanthr 97.6 0.00079 1.7E-08 54.1 9.9 78 101-182 36-113 (151)
51 PF06249 EutQ: Ethanolamine ut 97.5 0.00028 6.1E-09 57.1 6.2 70 97-176 76-145 (152)
52 TIGR02272 gentisate_1_2 gentis 97.4 0.00081 1.7E-08 61.1 9.2 87 79-175 232-319 (335)
53 COG4766 EutQ Ethanolamine util 97.2 0.0033 7.1E-08 50.8 9.4 70 97-176 99-168 (176)
54 COG1898 RfbC dTDP-4-dehydrorha 97.2 0.0068 1.5E-07 50.2 11.1 69 107-175 54-131 (173)
55 TIGR01221 rmlC dTDP-4-dehydror 97.2 0.0074 1.6E-07 50.1 11.2 78 106-184 52-140 (176)
56 COG3450 Predicted enzyme of th 97.1 0.0011 2.3E-08 51.4 5.6 61 97-164 44-104 (116)
57 PF00908 dTDP_sugar_isom: dTDP 97.0 0.0036 7.7E-08 51.9 7.9 79 106-184 51-140 (176)
58 PF05995 CDO_I: Cysteine dioxy 97.0 0.016 3.5E-07 47.8 11.6 83 97-179 74-165 (175)
59 COG3435 Gentisate 1,2-dioxygen 96.7 0.0069 1.5E-07 54.0 7.6 89 77-175 241-331 (351)
60 PF04209 HgmA: homogentisate 1 96.3 0.023 4.9E-07 53.2 8.6 57 112-175 139-195 (424)
61 PF13621 Cupin_8: Cupin-like d 96.0 0.041 8.8E-07 46.4 8.6 69 100-169 132-236 (251)
62 COG3257 GlxB Uncharacterized p 95.8 0.065 1.4E-06 45.9 8.7 87 77-173 165-252 (264)
63 PF07385 DUF1498: Protein of u 95.8 0.065 1.4E-06 45.9 8.6 75 102-178 91-188 (225)
64 TIGR01015 hmgA homogentisate 1 95.4 0.14 3E-06 47.9 9.9 62 111-177 140-201 (429)
65 PRK10572 DNA-binding transcrip 95.4 0.074 1.6E-06 46.4 7.9 44 119-167 49-92 (290)
66 PRK05341 homogentisate 1,2-dio 95.3 0.16 3.5E-06 47.6 10.1 59 111-175 146-204 (438)
67 PF13759 2OG-FeII_Oxy_5: Putat 95.0 0.057 1.2E-06 40.1 5.3 74 103-176 5-100 (101)
68 COG3806 ChrR Transcriptional a 95.0 0.15 3.2E-06 43.0 8.0 90 75-179 110-199 (216)
69 PF08007 Cupin_4: Cupin superf 94.9 0.26 5.7E-06 44.3 10.2 66 100-166 115-200 (319)
70 PF12852 Cupin_6: Cupin 94.9 0.19 4E-06 41.2 8.5 43 120-165 36-78 (186)
71 PF02678 Pirin: Pirin; InterP 94.8 0.16 3.5E-06 38.7 7.2 63 108-174 39-104 (107)
72 COG1741 Pirin-related protein 94.8 0.16 3.4E-06 45.1 8.1 70 102-176 48-122 (276)
73 PLN02658 homogentisate 1,2-dio 94.8 0.26 5.6E-06 46.2 9.8 57 113-175 141-197 (435)
74 PRK12335 tellurite resistance 94.7 0.15 3.3E-06 44.9 8.0 61 107-167 20-83 (287)
75 PRK09685 DNA-binding transcrip 94.5 0.29 6.4E-06 42.8 9.3 66 97-167 44-114 (302)
76 PF14499 DUF4437: Domain of un 94.4 0.03 6.5E-07 49.0 2.6 77 97-178 170-246 (251)
77 COG3822 ABC-type sugar transpo 94.3 0.3 6.4E-06 41.1 8.2 77 101-179 89-188 (225)
78 PF05118 Asp_Arg_Hydrox: Aspar 94.1 0.47 1E-05 38.6 9.0 82 88-174 68-156 (163)
79 KOG3995 3-hydroxyanthranilate 93.7 0.11 2.4E-06 44.3 4.6 57 106-164 41-97 (279)
80 PF07847 DUF1637: Protein of u 93.3 0.51 1.1E-05 40.0 8.1 87 92-179 38-144 (200)
81 TIGR02466 conserved hypothetic 92.9 0.66 1.4E-05 39.3 8.1 79 99-177 97-197 (201)
82 PF06865 DUF1255: Protein of u 92.8 0.95 2.1E-05 33.8 7.9 65 104-176 29-93 (94)
83 PRK10579 hypothetical protein; 92.7 1 2.2E-05 33.6 7.9 53 117-174 39-91 (94)
84 PF02373 JmjC: JmjC domain, hy 92.5 0.24 5.3E-06 36.8 4.6 29 140-168 79-107 (114)
85 COG5553 Predicted metal-depend 92.5 0.68 1.5E-05 38.0 7.3 69 98-168 73-147 (191)
86 COG3508 HmgA Homogentisate 1,2 92.1 2.2 4.8E-05 39.2 10.9 75 97-177 124-198 (427)
87 PRK00924 5-keto-4-deoxyuronate 92.0 1.1 2.4E-05 39.8 8.7 82 97-180 174-261 (276)
88 PRK15131 mannose-6-phosphate i 91.5 1.4 3E-05 41.0 9.3 59 97-163 320-378 (389)
89 TIGR00218 manA mannose-6-phosp 90.8 2.2 4.7E-05 38.1 9.5 59 97-163 234-292 (302)
90 PF05726 Pirin_C: Pirin C-term 90.6 1.2 2.7E-05 33.3 6.7 68 101-176 2-69 (104)
91 PF14525 AraC_binding_2: AraC- 90.2 4.4 9.5E-05 31.6 10.0 66 98-168 34-99 (172)
92 KOG2757 Mannose-6-phosphate is 90.0 3.7 8.1E-05 37.9 10.2 74 97-176 332-405 (411)
93 PLN02288 mannose-6-phosphate i 89.8 1.2 2.5E-05 41.6 7.1 58 97-158 333-390 (394)
94 PF06172 Cupin_5: Cupin superf 89.7 7.8 0.00017 30.8 10.9 85 97-184 40-131 (139)
95 PF09313 DUF1971: Domain of un 89.4 2.7 5.9E-05 30.5 7.4 59 109-167 14-75 (82)
96 KOG3706 Uncharacterized conser 89.0 0.34 7.4E-06 46.0 3.0 63 103-166 321-405 (629)
97 PRK09391 fixK transcriptional 87.6 6.7 0.00015 33.1 9.9 77 97-174 35-112 (230)
98 PF11142 DUF2917: Protein of u 87.5 2.6 5.6E-05 28.9 5.9 57 103-164 2-58 (63)
99 PF00027 cNMP_binding: Cyclic 86.7 2.1 4.5E-05 29.5 5.3 47 104-152 3-51 (91)
100 PRK11753 DNA-binding transcrip 86.7 7.8 0.00017 31.7 9.6 53 101-154 21-74 (211)
101 COG1482 ManA Phosphomannose is 85.4 7.6 0.00017 35.1 9.4 60 97-164 241-300 (312)
102 PF04962 KduI: KduI/IolB famil 84.7 19 0.00042 31.6 11.5 97 80-180 135-247 (261)
103 PRK13918 CRP/FNR family transc 84.5 4.1 8.9E-05 33.2 6.9 53 103-155 9-63 (202)
104 COG2850 Uncharacterized conser 83.8 1.4 3E-05 40.6 3.9 61 104-165 125-202 (383)
105 PRK00924 5-keto-4-deoxyuronate 81.8 13 0.00029 33.0 9.3 53 118-175 72-127 (276)
106 COG3123 Uncharacterized protei 80.0 7.1 0.00015 28.6 5.7 43 118-163 40-82 (94)
107 smart00100 cNMP Cyclic nucleot 79.3 12 0.00025 26.4 7.0 53 102-155 19-72 (120)
108 PF04962 KduI: KduI/IolB famil 79.2 23 0.00049 31.2 9.8 82 82-174 14-104 (261)
109 PRK03606 ureidoglycolate hydro 78.5 16 0.00035 29.9 8.1 78 97-174 55-139 (162)
110 PLN02868 acyl-CoA thioesterase 76.8 9.4 0.0002 35.4 7.1 53 101-154 32-84 (413)
111 cd00038 CAP_ED effector domain 76.6 12 0.00026 26.3 6.3 53 101-154 18-71 (115)
112 PF04115 Ureidogly_hydro: Urei 74.9 14 0.00031 30.0 7.0 80 97-176 56-144 (165)
113 KOG1417 Homogentisate 1,2-diox 74.0 37 0.00081 30.7 9.7 72 111-187 147-220 (446)
114 PRK10402 DNA-binding transcrip 73.2 12 0.00027 31.3 6.5 52 103-155 34-86 (226)
115 PRK15186 AraC family transcrip 69.3 19 0.00041 32.1 6.9 46 120-169 39-84 (291)
116 KOG2130 Phosphatidylserine-spe 67.4 14 0.00031 33.6 5.7 43 142-184 263-305 (407)
117 PF04622 ERG2_Sigma1R: ERG2 an 65.9 23 0.00049 30.4 6.4 92 109-211 112-205 (216)
118 PRK09392 ftrB transcriptional 65.0 37 0.0008 28.3 7.7 52 102-154 32-83 (236)
119 TIGR03697 NtcA_cyano global ni 64.8 16 0.00034 29.3 5.2 36 119-154 11-47 (193)
120 TIGR00218 manA mannose-6-phosp 64.8 3.9 8.4E-05 36.4 1.7 18 144-161 153-170 (302)
121 PHA02984 hypothetical protein; 64.5 46 0.001 29.6 8.1 51 120-172 92-144 (286)
122 PRK15131 mannose-6-phosphate i 60.3 7.3 0.00016 36.2 2.7 22 143-164 238-259 (389)
123 COG1482 ManA Phosphomannose is 60.2 8.1 0.00018 35.0 2.8 21 144-164 160-180 (312)
124 PRK13395 ureidoglycolate hydro 60.0 60 0.0013 26.8 7.7 66 111-176 71-142 (171)
125 COG0664 Crp cAMP-binding prote 59.8 34 0.00074 27.2 6.3 56 100-156 23-79 (214)
126 PHA00672 hypothetical protein 58.3 85 0.0018 24.9 7.8 67 97-170 46-112 (152)
127 PF14801 GCD14_N: tRNA methylt 57.4 23 0.00049 23.7 3.9 36 131-166 11-46 (54)
128 PF06719 AraC_N: AraC-type tra 56.4 1E+02 0.0022 24.5 9.8 52 120-176 24-78 (155)
129 PRK11161 fumarate/nitrate redu 55.8 31 0.00067 28.7 5.6 50 104-154 41-91 (235)
130 PF13640 2OG-FeII_Oxy_3: 2OG-F 54.7 28 0.0006 25.0 4.5 63 103-165 4-86 (100)
131 PHA02890 hypothetical protein; 54.4 85 0.0019 27.7 8.0 44 120-164 91-136 (278)
132 KOG4281 Uncharacterized conser 53.5 5.8 0.00013 34.0 0.8 42 95-136 72-113 (236)
133 PRK14585 pgaD putative PGA bio 51.2 17 0.00036 29.0 2.9 25 195-219 88-112 (137)
134 KOG2131 Uncharacterized conser 50.2 18 0.00039 33.6 3.4 60 107-168 207-294 (427)
135 PRK02290 3-dehydroquinate synt 49.2 91 0.002 28.7 7.7 85 77-165 250-337 (344)
136 COG3717 KduI 5-keto 4-deoxyuro 48.9 69 0.0015 28.1 6.5 86 93-180 172-263 (278)
137 PF13994 PgaD: PgaD-like prote 48.4 21 0.00047 28.1 3.2 24 196-219 100-123 (138)
138 COG3718 IolB Uncharacterized e 48.3 1.5E+02 0.0031 26.1 8.4 84 81-168 15-103 (270)
139 PF07172 GRP: Glycine rich pro 47.8 11 0.00025 28.0 1.5 24 7-30 1-27 (95)
140 PRK14584 hmsS hemin storage sy 46.6 24 0.00052 28.7 3.2 25 195-219 97-121 (153)
141 KOG3416 Predicted nucleic acid 46.3 41 0.00088 26.6 4.3 66 90-164 11-80 (134)
142 PF01959 DHQS: 3-dehydroquinat 44.9 1.2E+02 0.0026 28.0 7.9 85 77-165 260-347 (354)
143 TIGR00022 uncharacterized prot 42.5 1.2E+02 0.0027 23.7 6.8 26 110-135 60-85 (142)
144 COG1741 Pirin-related protein 40.0 2.7E+02 0.0058 24.7 10.3 43 89-133 165-207 (276)
145 PRK10202 ebgC cryptic beta-D-g 39.8 1.6E+02 0.0035 23.4 7.1 52 112-163 58-127 (149)
146 PLN03192 Voltage-dependent pot 39.7 66 0.0014 32.7 5.9 52 100-152 397-448 (823)
147 COG2731 EbgC Beta-galactosidas 38.4 1.1E+02 0.0024 24.8 5.9 58 110-167 60-137 (154)
148 PLN02288 mannose-6-phosphate i 38.0 23 0.0005 33.1 2.2 21 144-164 253-273 (394)
149 KOG0498 K+-channel ERG and rel 36.5 60 0.0013 32.8 4.9 48 104-152 446-493 (727)
150 PF02787 CPSase_L_D3: Carbamoy 34.6 42 0.00091 26.0 2.9 26 196-221 72-97 (123)
151 PF13348 Y_phosphatase3C: Tyro 32.9 45 0.00098 22.5 2.5 28 189-220 40-67 (68)
152 KOG0500 Cyclic nucleotide-gate 32.6 87 0.0019 30.3 5.0 33 118-152 347-379 (536)
153 PF04074 DUF386: Domain of unk 31.5 1.5E+02 0.0032 23.5 5.7 54 110-163 60-134 (153)
154 PF13384 HTH_23: Homeodomain-l 27.6 68 0.0015 19.9 2.6 26 196-221 17-42 (50)
155 KOG2132 Uncharacterized conser 26.8 43 0.00093 30.7 1.9 76 89-165 241-349 (355)
156 KOG1633 F-box protein JEMMA an 25.3 78 0.0017 32.3 3.6 38 141-178 195-232 (776)
157 PF13464 DUF4115: Domain of un 25.0 2.4E+02 0.0051 19.4 7.7 47 126-173 5-52 (77)
158 PF05962 HutD: HutD; InterPro 24.7 1.2E+02 0.0025 25.1 4.1 34 118-156 134-167 (184)
159 PF02796 HTH_7: Helix-turn-hel 24.5 82 0.0018 19.6 2.4 28 189-218 16-43 (45)
160 KOG0501 K+-channel KCNQ [Inorg 24.4 1.2E+02 0.0026 30.3 4.5 58 98-164 569-626 (971)
161 PF01987 AIM24: Mitochondrial 24.2 1.2E+02 0.0027 25.1 4.2 44 120-164 130-173 (215)
162 PF00325 Crp: Bacterial regula 23.6 88 0.0019 18.5 2.3 24 197-220 3-26 (32)
163 PF13613 HTH_Tnp_4: Helix-turn 23.4 88 0.0019 20.1 2.5 24 196-219 19-42 (53)
164 PF12937 F-box-like: F-box-lik 23.4 1E+02 0.0022 18.9 2.8 21 196-216 3-24 (47)
165 PRK05467 Fe(II)-dependent oxyg 23.0 2.6E+02 0.0056 24.1 6.0 25 143-167 142-166 (226)
166 PF04773 FecR: FecR protein; 22.8 2.7E+02 0.0059 19.3 7.6 57 102-161 20-77 (98)
167 TIGR03643 conserved hypothetic 22.3 1.1E+02 0.0023 21.7 2.8 28 196-223 13-41 (72)
168 KOG1356 Putative transcription 22.0 34 0.00073 35.0 0.4 58 104-166 761-823 (889)
169 PF10985 DUF2805: Protein of u 21.7 1.1E+02 0.0024 21.7 2.8 28 196-223 12-40 (73)
170 PF00166 Cpn10: Chaperonin 10 20.4 1.6E+02 0.0035 21.3 3.7 34 128-164 43-76 (93)
171 PF01238 PMI_typeI: Phosphoman 20.2 65 0.0014 29.7 1.8 21 144-164 252-272 (373)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.95 E-value=9.9e-27 Score=212.00 Aligned_cols=161 Identities=17% Similarity=0.288 Sum_probs=137.6
Q ss_pred CCCCCCCCCCCCeeeeccCCCCccCcCCceEEEeccCCCCCcCccceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEE
Q 027375 52 PCKPASNVTSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLL 131 (224)
Q Consensus 52 ~ck~p~~v~~~df~f~l~~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~ 131 (224)
+-+.+..-..+.|+|.+...... ...|++++.++..+||+++ ++++++++++||++.++|||++++|++||++|+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~p~-~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~ 278 (367)
T TIGR03404 202 AVTGPAGEVPGPFTYHLSEQKPK-QVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQAR 278 (367)
T ss_pred cCcCCCCCCCccEEEEhhhCCce-ecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEE
Confidence 33445555566788844443333 5677889999999999988 59999999999999999999999999999999999
Q ss_pred EEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEEeCCCCcceecccchhcCCCCCCHHHHHhhcCCCHH
Q 027375 132 VGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSISTIFDATPPVPNEVLTKSFRVGDD 211 (224)
Q Consensus 132 v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~~~~f~s~p~~p~~vLa~af~~~~~ 211 (224)
+++.+++++.....+++||+++||+|..|+++|.|+++++++++|++..++.+.++ .|.+ .+|++||+++|+++++
T Consensus 279 ~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~--~~l~--~~p~~vl~~~~~~~~~ 354 (367)
T TIGR03404 279 MTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLN--QWLA--LTPPQLVAAHLNLDDE 354 (367)
T ss_pred EEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHH--HHHh--hCCHHHHHHHhCcCHH
Confidence 99988776655679999999999999999999999999999999999887777765 3444 6999999999999999
Q ss_pred HHHHHHHh
Q 027375 212 VINAIRAA 219 (224)
Q Consensus 212 ~v~~l~~~ 219 (224)
++++|++.
T Consensus 355 ~~~~l~~~ 362 (367)
T TIGR03404 355 VIDSLKKE 362 (367)
T ss_pred HHHhcccc
Confidence 99999865
No 2
>PLN00212 glutelin; Provisional
Probab=99.93 E-value=1e-24 Score=203.96 Aligned_cols=146 Identities=23% Similarity=0.380 Sum_probs=127.7
Q ss_pred CCccCcCCceEEEeccCCCCCcCccceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecC-CeEEEEEECCCC
Q 027375 72 PTTFDVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTN-NTFFSKVLTPGM 150 (224)
Q Consensus 72 ~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~-~~~~~~~L~~GD 150 (224)
.++.++.+++++.++..+||+|+++++++.+++|.||++.+||||++|+|++||++|++++++++++ +++|..+|++||
T Consensus 322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~Gd 401 (493)
T PLN00212 322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQ 401 (493)
T ss_pred cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCC
Confidence 4556888999999999999999999999999999999999999999999999999999999999877 578999999999
Q ss_pred EEEEcCCCeeEEEecCCCCEEEEEEEeCCCCcceecc--cchhcCCCCCCHHHHHhhcCCCHHHHHHHHHhcC
Q 027375 151 VFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSI--STIFDATPPVPNEVLTKSFRVGDDVINAIRAARA 221 (224)
Q Consensus 151 v~viP~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~--~~~f~s~p~~p~~vLa~af~~~~~~v~~l~~~~~ 221 (224)
+++||+|.+|.... +++...++++..+.++-...++ .++|+ .||.+||+++|+++.+++++||..+.
T Consensus 402 vfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~---alp~eVla~Af~is~eea~~lk~n~~ 470 (493)
T PLN00212 402 LLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFR---ALPVDVIANAYRISREEARRLKNNRG 470 (493)
T ss_pred EEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHH---hCCHHHHHHHcCCCHHHHHHHHhccc
Confidence 99999999998766 4666777776665554222222 68999 59999999999999999999998853
No 3
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.91 E-value=4.9e-24 Score=170.35 Aligned_cols=134 Identities=29% Similarity=0.467 Sum_probs=111.6
Q ss_pred eccCCCCccCcCCceEEEeccCCCCCcCcc-ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCC-----e
Q 027375 67 DFSKDPTTFDVFKRAVTFGDVFGFPAVNTQ-GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNN-----T 140 (224)
Q Consensus 67 ~l~~~~~~~~~~g~~v~~~~~~~fP~l~~~-gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~-----~ 140 (224)
.+..+.+..+..+|.++.++..++|.+.+. ++.+.++.++||++.+|||| ++.|+.||++|+++++++.+++ +
T Consensus 2 n~~~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~ 80 (144)
T PF00190_consen 2 NLREPRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFR 80 (144)
T ss_dssp ETCSSSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEE
T ss_pred CCCCCCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccce
Confidence 344554555778889999999999965554 45566677799999999999 9999999999999999998865 3
Q ss_pred EEEEE--ECCCCEEEEcCCCeeEEEecCCCCEEEEEEEeCCCCcceecccchhcCCCCCCHHHHHhhcCCCHHHH
Q 027375 141 FFSKV--LTPGMVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSISTIFDATPPVPNEVLTKSFRVGDDVI 213 (224)
Q Consensus 141 ~~~~~--L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~~~~f~s~p~~p~~vLa~af~~~~~~v 213 (224)
.+.++ +++||++++|+|.+||+.|.++++...+.+|.+.+|..+ +|+++++++|+++.+++
T Consensus 81 ~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 81 DFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp EEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHH
T ss_pred eeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcC
Confidence 44556 999999999999999999999888888888888776654 89999999999999876
No 4
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.91 E-value=3e-23 Score=189.14 Aligned_cols=145 Identities=19% Similarity=0.235 Sum_probs=124.2
Q ss_pred eeeeccCCCCccCcCCceEEEeccCCCCCcCccceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEE
Q 027375 64 FFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFS 143 (224)
Q Consensus 64 f~f~l~~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~ 143 (224)
|.|.+.+.. -..|++++.++..+||++++ +++.+++++||++.++|||. +.|++||++|++++++++++|+.|.
T Consensus 38 ~~~~~~~~~---~~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d~~g~~~~ 111 (367)
T TIGR03404 38 WSFSDSHNR---LENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVDENGRNYI 111 (367)
T ss_pred eeeccccCc---cccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEcCCCcEEE
Confidence 555665542 24688899999999999995 89999999999999999995 5899999999999999988889887
Q ss_pred EEECCCCEEEEcCCCeeEEEecCCCCEEEEEEEeCCC---CcceecccchhcCCCCCCHHHHHhhcCCCHHHHHHHHHh
Q 027375 144 KVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFNTQN---PGVSDSISTIFDATPPVPNEVLTKSFRVGDDVINAIRAA 219 (224)
Q Consensus 144 ~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~---pg~~~~~~~~f~s~p~~p~~vLa~af~~~~~~v~~l~~~ 219 (224)
++|++||+++||+|.+|+++|.+ +++.++.+|++.. +..+.+.. .|+ .+|++||+++|+++++++++|+++
T Consensus 112 ~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~-~l~---~~p~~Vla~~f~l~~~~~~~l~~~ 185 (367)
T TIGR03404 112 DDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTD-WLA---HTPKDVLAKNFGVPESAFDNLPLK 185 (367)
T ss_pred eEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHH-HHH---hCCHHHHHHHhCCCHHHHHhcccc
Confidence 78999999999999999999985 5678888887653 45566654 466 499999999999999999999874
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.86 E-value=1.7e-20 Score=150.28 Aligned_cols=135 Identities=37% Similarity=0.629 Sum_probs=116.9
Q ss_pred cCcCCceEEEeccCCCCCcCccceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecC-CeEEEEEECCCCEEE
Q 027375 75 FDVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTN-NTFFSKVLTPGMVFL 153 (224)
Q Consensus 75 ~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~-~~~~~~~L~~GDv~v 153 (224)
.+..||.++.++...+|.+++.++.+.+++++||+..++|||+++.|++||++|++++.+.+.+ ++.+...+++||+++
T Consensus 7 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 7 FSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV 86 (146)
T ss_pred ccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence 3677788999999999999999999999999999999999998889999999999999987653 355567999999999
Q ss_pred EcCCCeeEEEecCCCCEEEEEEEeCCCCcce---ecccchhcCCCCCCHHHHHhhcCCCHHHH
Q 027375 154 IPRALVHFQLNVGNEPATFIPIFNTQNPGVS---DSISTIFDATPPVPNEVLTKSFRVGDDVI 213 (224)
Q Consensus 154 iP~G~~H~~~N~g~~~a~~i~~~~s~~pg~~---~~~~~~f~s~p~~p~~vLa~af~~~~~~v 213 (224)
||+|..|++.|.+++++++++ +.+++|... ....++|. ++++++++++|+++++++
T Consensus 87 ip~g~~H~~~n~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 87 VPQGHPHFQVNSGDENLEFVA-FNTNDPNRRFFLAGRNSVLR---GLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred ECCCCEEEEEcCCCCCEEEEE-EecCCCCceeEeecccchhh---cCCHHHHHHHhCcChHHc
Confidence 999999999999999999985 666666543 22256788 699999999999999875
No 6
>PLN00212 glutelin; Provisional
Probab=99.83 E-value=1.5e-19 Score=169.34 Aligned_cols=140 Identities=16% Similarity=0.249 Sum_probs=116.4
Q ss_pred cCcCCceEEEeccCCCCCcCccceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCC-----eEE-------
Q 027375 75 FDVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNN-----TFF------- 142 (224)
Q Consensus 75 ~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~-----~~~------- 142 (224)
....||.+..++ .+-+.|.+.|+++.|++++|+|+.+||+| ++.+++||++|++.++++.++. +.+
T Consensus 58 i~se~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~ 135 (493)
T PLN00212 58 VRSEAGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEG 135 (493)
T ss_pred hcccCceeeecC-CCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccc
Confidence 356677666666 66899999999999999999999999999 7899999999999999997532 111
Q ss_pred -------------EEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEEeCCC------Ccc--eec---------------
Q 027375 143 -------------SKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFNTQN------PGV--SDS--------------- 186 (224)
Q Consensus 143 -------------~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~------pg~--~~~--------------- 186 (224)
.+.|++||+++||+|+.||++|.|+++++++++++..+ |+. +.+
T Consensus 136 ~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~ 215 (493)
T PLN00212 136 QSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSI 215 (493)
T ss_pred cccccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccc
Confidence 15899999999999999999999999999998887543 221 112
Q ss_pred ----ccchhcCCCCCCHHHHHhhcCCCHHHHHHHHHh
Q 027375 187 ----ISTIFDATPPVPNEVLTKSFRVGDDVINAIRAA 219 (224)
Q Consensus 187 ----~~~~f~s~p~~p~~vLa~af~~~~~~v~~l~~~ 219 (224)
+.++|. ++++++|++||+++.++++||+..
T Consensus 216 ~~~~~~nifs---GF~~e~La~Afnv~~e~~~klq~~ 249 (493)
T PLN00212 216 EQHSGQNIFS---GFSTELLSEALGINAQVAKRLQSQ 249 (493)
T ss_pred cccccCchhh---cCCHHHHHHHHCCCHHHHHHHhcc
Confidence 234888 799999999999999999999754
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.76 E-value=7e-18 Score=141.40 Aligned_cols=150 Identities=17% Similarity=0.261 Sum_probs=125.0
Q ss_pred CCCCeeee-ccCCCCccCcCCceEEEeccCCCCCcCccceEEEEEEEcCCccCCCccCCCCCE--EEEEEeCeEEEEEEe
Q 027375 60 TSDDFFTD-FSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTE--AGIVTRGTLLVGIVT 136 (224)
Q Consensus 60 ~~~df~f~-l~~~~~~~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~pgg~~ppH~Hp~a~E--i~yVl~G~~~v~~~~ 136 (224)
..+||+|. +...+. ..++.+.......+|+- ....+.+.||++...||||+++| |.||++|++++.+.+
T Consensus 49 ~~~~~~yel~~~~~~---~~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~ 120 (209)
T COG2140 49 KEDDFVYELLESEPG---ERGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK 120 (209)
T ss_pred CCCceEEEeeccccc---ccCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence 56889993 333222 23888999988999984 56778999999999999999999 999999999999999
Q ss_pred cCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEEeCCCCcceecccchhcCCCCCCHHHHHhhcCCCHHHHHHH
Q 027375 137 TNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSISTIFDATPPVPNEVLTKSFRVGDDVINAI 216 (224)
Q Consensus 137 ~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~~~~f~s~p~~p~~vLa~af~~~~~~v~~l 216 (224)
++|+.....+++||+++||++..|+..|+|+++++++.++....+ +.+....|.. +++..+++..++.+...++.+
T Consensus 121 ~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~--~~y~~~~~~~--~~~~~~~~~~~~~~~~~~D~p 196 (209)
T COG2140 121 PEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAG--QDYDLIAWLG--GMPPVLVENGLNKNPKYVDVP 196 (209)
T ss_pred CCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCC--ceeeeeehhc--cCCceeeccccccCcccccCc
Confidence 889888889999999999999999999999999999999976553 3333345555 689999999999888888887
Q ss_pred HHhcC
Q 027375 217 RAARA 221 (224)
Q Consensus 217 ~~~~~ 221 (224)
+.++.
T Consensus 197 ~~~~~ 201 (209)
T COG2140 197 RIKFA 201 (209)
T ss_pred ccccc
Confidence 66654
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.51 E-value=6.3e-14 Score=97.71 Aligned_cols=70 Identities=33% Similarity=0.514 Sum_probs=63.5
Q ss_pred EEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEE
Q 027375 102 RLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIF 176 (224)
Q Consensus 102 ~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 176 (224)
+++++||+..++|+|+...|++||++|++++.+ +++. ..+++||.+++|+|..|...|.++++++++.++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~~--~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DGER--VELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TTEE--EEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE---ccEE--eEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 578999999999999885599999999999985 4664 499999999999999999999999999999875
No 9
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.45 E-value=1.2e-12 Score=102.63 Aligned_cols=85 Identities=28% Similarity=0.418 Sum_probs=72.2
Q ss_pred CCCCcCccceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCC
Q 027375 89 GFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNE 168 (224)
Q Consensus 89 ~fP~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~ 168 (224)
..+...+..+.+.++.++||+..++|+||...+.+||++|++++++. ++. +++++||++++|+|..|+..|.+++
T Consensus 34 ~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~---g~~--~~l~~Gd~i~ip~g~~H~~~a~~~~ 108 (131)
T COG1917 34 VLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE---GEK--KELKAGDVIIIPPGVVHGLKAVEDE 108 (131)
T ss_pred eccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec---CCc--eEecCCCEEEECCCCeeeeccCCCC
Confidence 34444556789999999999999999999558999999999999983 554 4999999999999999999999988
Q ss_pred CEEEEEEEeC
Q 027375 169 PATFIPIFNT 178 (224)
Q Consensus 169 ~a~~i~~~~s 178 (224)
....++++..
T Consensus 109 ~~~~l~v~~~ 118 (131)
T COG1917 109 PMVLLLVFPL 118 (131)
T ss_pred ceeEEEEeee
Confidence 7666766654
No 10
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=3.7e-12 Score=99.93 Aligned_cols=82 Identities=24% Similarity=0.228 Sum_probs=73.3
Q ss_pred cceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEE
Q 027375 96 QGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPI 175 (224)
Q Consensus 96 ~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 175 (224)
...++.++.+.||+...+|.|.+.+|++||++|++.+.+ +++.+ .|++||+++||+|..|...|.|..++.++.+
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~---~~~~~--~v~~gd~~~iP~g~~H~~~N~G~~~L~liei 108 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI---GGEEV--EVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV 108 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE---CCEEE--EecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence 368899999999999999988888999999999999998 46654 9999999999999999999999999999998
Q ss_pred EeCCCCc
Q 027375 176 FNTQNPG 182 (224)
Q Consensus 176 ~~s~~pg 182 (224)
-.....+
T Consensus 109 ~~p~~~~ 115 (127)
T COG0662 109 QSPPYLG 115 (127)
T ss_pred ecCCcCC
Confidence 7665444
No 11
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.41 E-value=3.8e-12 Score=99.90 Aligned_cols=82 Identities=18% Similarity=0.248 Sum_probs=71.0
Q ss_pred cceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEE-EEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEE
Q 027375 96 QGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVG-IVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIP 174 (224)
Q Consensus 96 ~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~-~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~ 174 (224)
.++++.+++++||+..+.|+|.. .|++||++|++++. +. +++.+ .|++||++++|++..|.+.|. +++++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~--~g~~~--~L~aGD~i~~~~~~~H~~~N~--e~~~~l~ 105 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLA--TGEVH--PIRPGTMYALDKHDRHYLRAG--EDMRLVC 105 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcC--CCEEE--EeCCCeEEEECCCCcEEEEcC--CCEEEEE
Confidence 36899999999999999999976 79999999999998 52 25654 999999999999999999997 8999999
Q ss_pred EEeCCCCcce
Q 027375 175 IFNTQNPGVS 184 (224)
Q Consensus 175 ~~~s~~pg~~ 184 (224)
+++..-+|..
T Consensus 106 v~tP~~~~~~ 115 (125)
T PRK13290 106 VFNPPLTGRE 115 (125)
T ss_pred EECCCCCCcc
Confidence 9986655554
No 12
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.33 E-value=3e-11 Score=101.25 Aligned_cols=88 Identities=19% Similarity=0.281 Sum_probs=75.0
Q ss_pred CcCccceEEEEEEEcCCcc------CCCccCCCC--CEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEE
Q 027375 92 AVNTQGVSLFRLDLDVGGI------NPPHTHPRG--TEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQL 163 (224)
Q Consensus 92 ~l~~~gis~~~v~l~pgg~------~ppH~Hp~a--~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~ 163 (224)
.++..++.+....+.||.. .+.|+|+.. .|+.||++|++.+.+.+.+|+.....+++||+++||+|..|...
T Consensus 62 ~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~i 141 (191)
T PRK04190 62 EETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSV 141 (191)
T ss_pred CCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeE
Confidence 3455579999999999996 567999754 59999999999999876655544569999999999999999999
Q ss_pred ecCCCCEEEEEEEeCC
Q 027375 164 NVGNEPATFIPIFNTQ 179 (224)
Q Consensus 164 N~g~~~a~~i~~~~s~ 179 (224)
|.|++++++++++...
T Consensus 142 N~G~epl~fl~v~p~~ 157 (191)
T PRK04190 142 NTGDEPLVFLACYPAD 157 (191)
T ss_pred ECCCCCEEEEEEEcCC
Confidence 9999999999988653
No 13
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.23 E-value=8.7e-11 Score=94.37 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=70.2
Q ss_pred CCCCcCccceEEEEEEEcCCcc-CCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCC--CeeEEEec
Q 027375 89 GFPAVNTQGVSLFRLDLDVGGI-NPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRA--LVHFQLNV 165 (224)
Q Consensus 89 ~fP~l~~~gis~~~v~l~pgg~-~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G--~~H~~~N~ 165 (224)
.+-+|+. +.+....++||+. ...|||...+|++||++|++++.+ ++..+ .|++||++-||+| ..|.+.|.
T Consensus 35 ~~~Gl~~--fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~---d~~e~--~lrpGD~~gFpAG~~~aHhliN~ 107 (161)
T COG3837 35 DALGLKR--FGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE---DGGET--RLRPGDSAGFPAGVGNAHHLINR 107 (161)
T ss_pred hhcChhh--cccceEEeCCCCccccccccccCceEEEEEcCceEEEE---CCeeE--EecCCceeeccCCCcceeEEeec
Confidence 3446664 4445557899997 688999999999999999999987 45544 9999999999999 89999999
Q ss_pred CCCCEEEEEEEeCCC
Q 027375 166 GNEPATFIPIFNTQN 180 (224)
Q Consensus 166 g~~~a~~i~~~~s~~ 180 (224)
++..++++++-+...
T Consensus 108 s~~~~~yL~vG~r~~ 122 (161)
T COG3837 108 SDVILRYLEVGTREP 122 (161)
T ss_pred CCceEEEEEeccccc
Confidence 999999999866543
No 14
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.17 E-value=3e-10 Score=107.01 Aligned_cols=78 Identities=24% Similarity=0.278 Sum_probs=71.1
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEE
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIF 176 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 176 (224)
++.+.+++++||+..+.|+|++..|.+||++|++++.+ +++.+ .|++||++++|+|..|.+.|.|+++++++++.
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~---dg~~~--~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI---GDETL--LLTENESTYIPLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE---CCEEE--EecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 68899999999999899999888999999999999988 56754 99999999999999999999999999999997
Q ss_pred eCC
Q 027375 177 NTQ 179 (224)
Q Consensus 177 ~s~ 179 (224)
...
T Consensus 450 ~~~ 452 (468)
T TIGR01479 450 SGS 452 (468)
T ss_pred cCC
Confidence 643
No 15
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.17 E-value=4.3e-10 Score=93.29 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=65.1
Q ss_pred ceEEEEEEEcCCccC-CCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEE
Q 027375 97 GVSLFRLDLDVGGIN-PPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPI 175 (224)
Q Consensus 97 gis~~~v~l~pgg~~-ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 175 (224)
.+.+.+..++||+.. +.|+|+. .|++||++|++++.+ +++.+ .|++||.++||.+.+|.+.|.+++++.++++
T Consensus 106 ~~~~~~~~~~pg~~~~~~~~h~~-~E~~~Vl~G~~~~~~---~~~~~--~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~ 179 (185)
T PRK09943 106 TLAMIFETYQPGTTTGERIKHQG-EEIGTVLEGEIVLTI---NGQDY--HLVAGQSYAINTGIPHSFSNTSAGICRIISA 179 (185)
T ss_pred eeEEEEEEccCCCCcccccccCC-cEEEEEEEeEEEEEE---CCEEE--EecCCCEEEEcCCCCeeeeCCCCCCeEEEEE
Confidence 467777889999964 4677865 999999999999988 46655 9999999999999999999999999999987
Q ss_pred Ee
Q 027375 176 FN 177 (224)
Q Consensus 176 ~~ 177 (224)
..
T Consensus 180 ~~ 181 (185)
T PRK09943 180 HT 181 (185)
T ss_pred eC
Confidence 64
No 16
>PRK11171 hypothetical protein; Provisional
Probab=99.14 E-value=1.6e-09 Score=95.07 Aligned_cols=77 Identities=18% Similarity=0.191 Sum_probs=68.0
Q ss_pred cceEEEEEEEcCCccCCCccCC-CCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEE
Q 027375 96 QGVSLFRLDLDVGGINPPHTHP-RGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIP 174 (224)
Q Consensus 96 ~gis~~~v~l~pgg~~ppH~Hp-~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~ 174 (224)
.++.+.+++++||+....|+|+ ...|++||++|++++.+ +++. ..|++||.+++|++..|.+.|.+++++++++
T Consensus 59 ~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~---~g~~--~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~ 133 (266)
T PRK11171 59 ATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL---EGKT--HALSEGGYAYLPPGSDWTLRNAGAEDARFHW 133 (266)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE---CCEE--EEECCCCEEEECCCCCEEEEECCCCCEEEEE
Confidence 4799999999999987777775 55899999999999997 4665 4999999999999999999999999999998
Q ss_pred EEe
Q 027375 175 IFN 177 (224)
Q Consensus 175 ~~~ 177 (224)
+..
T Consensus 134 v~~ 136 (266)
T PRK11171 134 IRK 136 (266)
T ss_pred EEc
Confidence 863
No 17
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.13 E-value=5.5e-10 Score=105.41 Aligned_cols=78 Identities=22% Similarity=0.239 Sum_probs=70.2
Q ss_pred cceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEE
Q 027375 96 QGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPI 175 (224)
Q Consensus 96 ~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 175 (224)
.++.+.+++++||+....|+|....|.+||++|++++.+ +++.+ .|++||.++||+|..|.+.|.|+++++++++
T Consensus 383 ~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~i---dg~~~--~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V 457 (478)
T PRK15460 383 DRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTI---DGDIK--LLGENESIYIPLGATHCLENPGKIPLDLIEV 457 (478)
T ss_pred CcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEE---CCEEE--EecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence 368899999999998877888777899999999999998 56754 9999999999999999999999999999998
Q ss_pred EeC
Q 027375 176 FNT 178 (224)
Q Consensus 176 ~~s 178 (224)
...
T Consensus 458 ~~g 460 (478)
T PRK15460 458 RSG 460 (478)
T ss_pred EcC
Confidence 654
No 18
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.07 E-value=1.7e-09 Score=87.57 Aligned_cols=76 Identities=25% Similarity=0.288 Sum_probs=69.7
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEE
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIF 176 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 176 (224)
+..+-|+.+.||....+|.|....|..+|++|++.+.+ +++. +.+++||.++||+|..|.+.|.|+.++.++.+-
T Consensus 62 ~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~---~~~~--~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq 136 (151)
T PF01050_consen 62 GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL---DDEE--FTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQ 136 (151)
T ss_pred CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE---CCEE--EEEcCCCEEEECCCCEEEEECCCCcCcEEEEEe
Confidence 68899999999999999999888999999999999997 4665 499999999999999999999999999999875
Q ss_pred e
Q 027375 177 N 177 (224)
Q Consensus 177 ~ 177 (224)
.
T Consensus 137 ~ 137 (151)
T PF01050_consen 137 T 137 (151)
T ss_pred c
Confidence 4
No 19
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=1.7e-09 Score=83.30 Aligned_cols=83 Identities=22% Similarity=0.267 Sum_probs=72.1
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEE
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIF 176 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 176 (224)
++-+..+++.||+..-.|-|.+.+-.+||++|+...++.+ .-++..+.++||.|+||+|++|.-.|.+++++..+.+-
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~--rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIaR 122 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGN--RLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIAR 122 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeecc--ceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEEc
Confidence 6889999999999999999988788899999999999842 22345689999999999999999999999999998887
Q ss_pred eCCCC
Q 027375 177 NTQNP 181 (224)
Q Consensus 177 ~s~~p 181 (224)
+..||
T Consensus 123 sDp~~ 127 (142)
T COG4101 123 SDPNP 127 (142)
T ss_pred cCCCC
Confidence 75554
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.05 E-value=1.7e-09 Score=94.72 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=63.9
Q ss_pred ceEEEEEEEcCCccCCC-ccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEE
Q 027375 97 GVSLFRLDLDVGGINPP-HTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPI 175 (224)
Q Consensus 97 gis~~~v~l~pgg~~pp-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 175 (224)
++.+.+++++||+..+. |.|. ..|.+||++|++.+.+ ||+.+ .+++||++++|++.+|+++|.|+++.+++.-
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~-~eh~~yiL~G~G~~~~---~g~~~--~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~y 251 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHV-MEHGLYVLEGKGVYNL---DNNWV--PVEAGDYIWMGAYCPQACYAGGRGEFRYLLY 251 (260)
T ss_pred CcEEEEEEECCCcccCCccccc-ceeEEEEEeceEEEEE---CCEEE--EecCCCEEEECCCCCEEEEecCCCcEEEEEE
Confidence 57888899999999996 5554 5889999999999987 57754 9999999999999999999999999988753
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.00 E-value=8.8e-09 Score=90.22 Aligned_cols=76 Identities=17% Similarity=0.095 Sum_probs=66.2
Q ss_pred ceEEEEEEEcCCccC-CCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEE
Q 027375 97 GVSLFRLDLDVGGIN-PPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPI 175 (224)
Q Consensus 97 gis~~~v~l~pgg~~-ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 175 (224)
.+.+.+++++||+.. .+|+|+...|++||++|++++.+ +++. ..|++||.+++|+|..|.+.|.++++++++++
T Consensus 57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~---~g~~--~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v 131 (260)
T TIGR03214 57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA---EGET--HELREGGYAYLPPGSKWTLANAQAEDARFFLY 131 (260)
T ss_pred cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE---CCEE--EEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence 689999999998864 46677776899999999999987 4665 49999999999999999999999999999887
Q ss_pred Ee
Q 027375 176 FN 177 (224)
Q Consensus 176 ~~ 177 (224)
-.
T Consensus 132 ~k 133 (260)
T TIGR03214 132 KK 133 (260)
T ss_pred Ee
Confidence 64
No 22
>PRK11171 hypothetical protein; Provisional
Probab=98.97 E-value=5.2e-09 Score=91.92 Aligned_cols=75 Identities=15% Similarity=0.137 Sum_probs=66.1
Q ss_pred ceEEEEEEEcCCccCCCc-cCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEE
Q 027375 97 GVSLFRLDLDVGGINPPH-THPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPI 175 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH-~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 175 (224)
.+.+.+++|+||+..+.| +| ...|.+||++|++++.+ +++.+ .|++||++.++.+..|++.|.|+++++++..
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~-~~ee~i~Vl~G~~~~~~---~~~~~--~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~ 256 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETH-VMEHGLYVLEGKGVYRL---NNDWV--EVEAGDFIWMRAYCPQACYAGGPGPFRYLLY 256 (266)
T ss_pred CcEEEEEEECCCCEEccCcCC-CceEEEEEEeCEEEEEE---CCEEE--EeCCCCEEEECCCCCEEEECCCCCcEEEEEE
Confidence 478999999999998885 56 45899999999999987 56754 9999999999999999999999999998875
Q ss_pred Ee
Q 027375 176 FN 177 (224)
Q Consensus 176 ~~ 177 (224)
-+
T Consensus 257 k~ 258 (266)
T PRK11171 257 KD 258 (266)
T ss_pred cc
Confidence 44
No 23
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.70 E-value=2.9e-07 Score=76.60 Aligned_cols=86 Identities=22% Similarity=0.291 Sum_probs=58.3
Q ss_pred cCccceEEEEEEEcCCcc------CCCccCCC------CCEEEEEEeCeEEEEEEecCC----eEEEEEECCCCEEEEcC
Q 027375 93 VNTQGVSLFRLDLDVGGI------NPPHTHPR------GTEAGIVTRGTLLVGIVTTNN----TFFSKVLTPGMVFLIPR 156 (224)
Q Consensus 93 l~~~gis~~~v~l~pgg~------~ppH~Hp~------a~Ei~yVl~G~~~v~~~~~~~----~~~~~~L~~GDv~viP~ 156 (224)
+...++......+.||.+ .-=|+|+. ..|+.+|++|++.+.+-+.++ +.+...+++||+++||+
T Consensus 45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp 124 (182)
T PF06560_consen 45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPP 124 (182)
T ss_dssp -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-T
T ss_pred ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECC
Confidence 334467788888888875 34599987 799999999999999988777 66778999999999999
Q ss_pred CCeeEEEecCCCCEEEEEEEeC
Q 027375 157 ALVHFQLNVGNEPATFIPIFNT 178 (224)
Q Consensus 157 G~~H~~~N~g~~~a~~i~~~~s 178 (224)
+..|...|+|++++++.....+
T Consensus 125 ~yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 125 GYAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp T-EEEEEE-SSS-EEEEEEEET
T ss_pred CceEEEEECCCCcEEEEEEEec
Confidence 9999999999999999888765
No 24
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.67 E-value=1.4e-07 Score=77.83 Aligned_cols=71 Identities=14% Similarity=0.082 Sum_probs=55.7
Q ss_pred EEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEEe
Q 027375 103 LDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFN 177 (224)
Q Consensus 103 v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~ 177 (224)
+.-.||....+|+|+. .|++|+++|++++.+.+. |+.....|++||++++|+|+.|..+.. +..+.+.+=.
T Consensus 39 vvgGpn~r~d~H~~~t-dE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~LviE~ 109 (177)
T PRK13264 39 VVGGPNARTDFHYDPG-EEFFYQLEGDMYLKVQED-GKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVIER 109 (177)
T ss_pred EEccCCcccccccCCC-ceEEEEECCeEEEEEEcC-CceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEEEe
Confidence 3446777889999975 999999999999999873 543356999999999999999998763 4445554433
No 25
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.66 E-value=2.4e-07 Score=74.08 Aligned_cols=90 Identities=19% Similarity=0.246 Sum_probs=55.5
Q ss_pred CCcCccceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecC----CeEEEEEECCCCEEEEcCCCeeEEEecC
Q 027375 91 PAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTN----NTFFSKVLTPGMVFLIPRALVHFQLNVG 166 (224)
Q Consensus 91 P~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~----~~~~~~~L~~GDv~viP~G~~H~~~N~g 166 (224)
-+++ .+.+.+-++.||...|.|-|. ..|+++|++|+++..+.... |+.....+.+++.|.||.+..|...|.+
T Consensus 39 hGmk--evEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 39 HGMK--EVEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp H--S--SEEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred cCce--eeeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 3444 478888999999999999995 69999999999999987653 4444569999999999999999999999
Q ss_pred -CCCEEEEEEEeCCCCcce
Q 027375 167 -NEPATFIPIFNTQNPGVS 184 (224)
Q Consensus 167 -~~~a~~i~~~~s~~pg~~ 184 (224)
.+++.++++.+ .-|-..
T Consensus 116 e~eDlqvlViiS-rpPvkv 133 (167)
T PF02041_consen 116 EHEDLQVLVIIS-RPPVKV 133 (167)
T ss_dssp SSS-EEEEEEEE-SSS--E
T ss_pred CCcceEEEEEec-CCCeEE
Confidence 48898888765 344333
No 26
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.60 E-value=3.7e-07 Score=74.23 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=52.0
Q ss_pred cCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEE
Q 027375 106 DVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIF 176 (224)
Q Consensus 106 ~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 176 (224)
.||.-..+|.|+ ..|++|+++|++.+.+.+. |+.....|++||++++|+|+.|.....++ ++.+.+=
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~~~--t~~LvIE 102 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRPAG--SIGLVIE 102 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccCCC--cEEEEEE
Confidence 556667789987 6999999999999998764 44334699999999999999999887533 4444433
No 27
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.57 E-value=3.9e-07 Score=69.35 Aligned_cols=66 Identities=30% Similarity=0.327 Sum_probs=47.6
Q ss_pred CCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEEeC
Q 027375 107 VGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFNT 178 (224)
Q Consensus 107 pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s 178 (224)
++...++|+|+. -|+.||++|++++.+ +++.+ .+++||++++|+|.+|.....++++...+.+.-+
T Consensus 12 ~~~~~~~h~h~~-~~i~~v~~G~~~~~~---~~~~~--~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~~ 77 (136)
T PF02311_consen 12 PNFEFPPHWHDF-YEIIYVLSGEGTLHI---DGQEY--PLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYFS 77 (136)
T ss_dssp TT-SEEEETT-S-EEEEEEEEE-EEEEE---TTEEE--EE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE-
T ss_pred CCCccCCEECCC-EEEEEEeCCEEEEEE---CCEEE--EEECCEEEEecCCccEEEecCCCCCEEEEEEEEC
Confidence 444568899975 999999999999987 57765 9999999999999999999887767776666543
No 28
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.47 E-value=1.8e-06 Score=63.34 Aligned_cols=72 Identities=32% Similarity=0.360 Sum_probs=54.4
Q ss_pred ceEEEEEEEcCCccCC-CccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEE
Q 027375 97 GVSLFRLDLDVGGINP-PHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIP 174 (224)
Q Consensus 97 gis~~~v~l~pgg~~p-pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~ 174 (224)
.++...++|+||+.-+ -+.+ +..-++||++|.+++.+ ++..+ .+.+|+++.+|+|-.-.+.|.++++|+++-
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~-~~~~vF~V~~G~v~Vti---~~~~f--~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF 83 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSR-DNTMVFYVIKGKVEVTI---HETSF--VVTKGGSFQVPRGNYYSIKNIGNEEAKLFF 83 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE---SEEEEEEEEESEEEEEE---TTEEE--EEETT-EEEE-TT-EEEEEE-SSS-EEEEE
T ss_pred CceeEEEEeCCCCccCCcccC-CcEEEEEEEeCEEEEEE---cCcEE--EEeCCCEEEECCCCEEEEEECCCCcEEEEE
Confidence 4788899999999865 4666 45889999999999998 45654 999999999999999999999999998874
No 29
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.47 E-value=7e-07 Score=65.83 Aligned_cols=66 Identities=26% Similarity=0.337 Sum_probs=52.9
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEE
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIP 174 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~ 174 (224)
+..+..++++||+..|.|+|+. .|.+|||+|++... +. .+.+||.++.|+|..|.... ++.+.++.
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~g-~ee~~VLeG~~~d~-----~~----~~~~G~~~~~p~g~~h~~~s--~~gc~~~v 88 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHPG-GEEILVLEGELSDG-----DG----RYGAGDWLRLPPGSSHTPRS--DEGCLILV 88 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEESS--EEEEEEECEEEET-----TC----EEETTEEEEE-TTEEEEEEE--SSCEEEEE
T ss_pred cCEEEEEEECCCCCcCccCCCC-cEEEEEEEEEEEEC-----Cc----cCCCCeEEEeCCCCccccCc--CCCEEEEE
Confidence 6788899999999999999976 88889999998742 33 56999999999999999884 56677664
No 30
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.45 E-value=9.8e-07 Score=78.56 Aligned_cols=60 Identities=20% Similarity=0.099 Sum_probs=50.1
Q ss_pred EEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCC
Q 027375 102 RLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGN 167 (224)
Q Consensus 102 ~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~ 167 (224)
...-.|..+.++|||.+ -|+.|+++|++.+.+ +|+.+ .+++||+++++.|.+|.....++
T Consensus 30 ~~~~~~~~m~~~HwH~e-~Ei~yv~~G~~~~~i---~g~~~--~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 30 IEFRPPHIMPTSHWHGQ-VEVNVPFDGDVEYLI---NNEKV--QINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EEeeCCCCCCCCCcccc-EEEEEecCCcEEEEE---CCEEE--EEcCCcEEEEecCCcccccccCC
Confidence 33456677899999976 999999999999887 57765 99999999999999998765544
No 31
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.44 E-value=3.2e-06 Score=72.45 Aligned_cols=71 Identities=14% Similarity=0.055 Sum_probs=52.3
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEE
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIF 176 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 176 (224)
.|+...+.++. . ..+||-+..|+.||++|++++.+ +|+.+ .+++||+++||+|..|.+...+ .+.++.+.
T Consensus 156 ~m~aGf~~~~~-~--sf~wtl~~dEi~YVLEGe~~l~I---dG~t~--~l~pGDvlfIPkGs~~hf~tp~--~aRflyV~ 225 (233)
T PRK15457 156 SMAAGFMQWEN-A--FFPWTLNYDEIDMVLEGELHVRH---EGETM--IAKAGDVMFIPKGSSIEFGTPS--SVRFLYVA 225 (233)
T ss_pred ceeeEEEEEec-C--ccceeccceEEEEEEEeEEEEEE---CCEEE--EeCCCcEEEECCCCeEEecCCC--CeeEEEEE
Confidence 36666666664 3 33466667999999999999998 57755 9999999999999996555443 56665554
Q ss_pred e
Q 027375 177 N 177 (224)
Q Consensus 177 ~ 177 (224)
.
T Consensus 226 ~ 226 (233)
T PRK15457 226 W 226 (233)
T ss_pred e
Confidence 3
No 32
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.40 E-value=1.3e-06 Score=74.55 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=62.1
Q ss_pred eEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEEe
Q 027375 98 VSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFN 177 (224)
Q Consensus 98 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~ 177 (224)
..+..++++||+..|.|.|.+ .|+.+|++|++. +. +. .+.+||++..|.|..|...+.++++++++++.+
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~G-~E~tlVLeG~f~----de-~g----~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~d 196 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHKG-FELTLVLHGAFS----DE-TG----VYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLD 196 (215)
T ss_pred cEEEEEEECCCCccCCCcCCC-cEEEEEEEEEEE----cC-CC----ccCCCeEEECCCCCCcCcccCCCCCeEEEEEec
Confidence 567788999999999999964 999999999953 22 22 679999999999999999999989999999987
Q ss_pred CC
Q 027375 178 TQ 179 (224)
Q Consensus 178 s~ 179 (224)
..
T Consensus 197 ap 198 (215)
T TIGR02451 197 AP 198 (215)
T ss_pred CC
Confidence 54
No 33
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.40 E-value=2.9e-06 Score=69.11 Aligned_cols=72 Identities=17% Similarity=0.257 Sum_probs=52.7
Q ss_pred cCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEEeCCCCcc
Q 027375 110 INPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGV 183 (224)
Q Consensus 110 ~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~pg~ 183 (224)
....|.|.+ .|+-|+++|++.+.+...+++..+..+++||.+++|+|..||+.-..+....++=.|. ..||.
T Consensus 84 f~~EH~H~d-eEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~-~~~gW 155 (157)
T PF03079_consen 84 FFEEHTHED-EEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK-DEPGW 155 (157)
T ss_dssp HCS-EEESS--EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES-SCGGE
T ss_pred hheeEecCh-heEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec-CCCCc
Confidence 357899986 9999999999999999877765567899999999999999999865556666665554 34554
No 34
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.33 E-value=5.6e-06 Score=67.67 Aligned_cols=74 Identities=12% Similarity=0.214 Sum_probs=62.0
Q ss_pred CCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEEeCCCCcceecc
Q 027375 112 PPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSI 187 (224)
Q Consensus 112 ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~ 187 (224)
.-|.|.+ .|+-|++.|.+.+.+...+|+.+.....+||.+.+|+|.-||+--..+-..+++=.|+ ..||++.+.
T Consensus 89 ~EH~H~d-~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~-~~~gWVa~y 162 (181)
T COG1791 89 QEHLHTD-DEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT-EPEGWVAIY 162 (181)
T ss_pred HHhccCC-ceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee-CCCCceeee
Confidence 5699975 9999999999999999998999988999999999999999999876555666665554 577887543
No 35
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.26 E-value=9e-06 Score=70.86 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=44.2
Q ss_pred CccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEec
Q 027375 108 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNV 165 (224)
Q Consensus 108 gg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~ 165 (224)
+...++|||. ..|++||++|++++.+ +++.+ .+.+||++++|+|..|.....
T Consensus 33 ~~~~~~H~H~-~~ei~~v~~G~~~~~i---~~~~~--~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHD-YYEFTLVLTGRYYQEI---NGKRV--LLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCcccc-cEEEEEEEeceEEEEE---CCEEE--EECCCcEEEeCCCCccceeee
Confidence 3456899996 5999999999999887 57765 999999999999999976543
No 36
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.17 E-value=7.7e-06 Score=71.89 Aligned_cols=62 Identities=31% Similarity=0.182 Sum_probs=49.2
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecC
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVG 166 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 166 (224)
.+.+.+ ..+....++|||+. .|++||++|++++.+ +|+.+ .+++||+++||+|.+|.+...+
T Consensus 19 ~~~~~~--~~~~~~~~~H~H~~-~ei~~i~~G~~~~~i---~~~~~--~l~~g~~~~I~p~~~H~~~~~~ 80 (290)
T PRK13501 19 PVAVTN--RYPQETFVEHTHQF-CEIVIVWRGNGLHVL---NDHPY--RITCGDVFYIQAADHHSYESVH 80 (290)
T ss_pred ceEEec--CCCCCCCccccccc-eeEEEEecCceEEEE---CCeee--eecCCeEEEEcCCCcccccccC
Confidence 344444 23444577999965 999999999999987 57755 9999999999999999987643
No 37
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.09 E-value=1.7e-05 Score=70.77 Aligned_cols=55 Identities=29% Similarity=0.259 Sum_probs=46.4
Q ss_pred CCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCC
Q 027375 107 VGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGN 167 (224)
Q Consensus 107 pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~ 167 (224)
|....++|||+ ..|++||++|++...+ +++.+ .+++||+++||+|.+|.+....+
T Consensus 57 ~~~~~~~H~H~-~~el~~v~~G~g~~~v---~~~~~--~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 57 PQDVFAEHTHD-FCELVIVWRGNGLHVL---NDRPY--RITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCccccc-eEEEEEEEcCeEEEEE---CCEEE--eecCCeEEEECCCCeecccccCC
Confidence 44457899997 5999999999999887 56765 99999999999999999876544
No 38
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=98.09 E-value=1.2e-05 Score=70.04 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=47.8
Q ss_pred CccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEE
Q 027375 108 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPAT 171 (224)
Q Consensus 108 gg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~ 171 (224)
+...++|||.+.-|++|+++|++.+.+ +++.+ .+++||++++|+|..|.+...++....
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~---~~~~~--~l~~g~~~ii~~~~~H~~~~~~~~~~~ 91 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQL---DEHEY--SEYAPCFFLTPPSVPHGFVTDLDADGH 91 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEE---CCEEE--EecCCeEEEeCCCCccccccCCCcceE
Confidence 456899999645899999999999877 46654 999999999999999998765544333
No 39
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.09 E-value=2.2e-05 Score=71.18 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=64.6
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEE
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIF 176 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 176 (224)
.|....-.+.||...++|-|. +.-+.+|++|++....+ +|+.+ .+++||+|++|.+..|...|.|+++++.+.++
T Consensus 80 tl~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V--~g~~~--~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~l 154 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAV--DGERT--TMHPGDFIITPSWTWHDHGNPGDEPMIWLDGL 154 (335)
T ss_pred hHHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEE--CCEEE--eeeCCCEEEeCCCeeEecccCCCCcEEEEecC
Confidence 456666788999999999996 58999999999965555 46754 99999999999999999999999998777666
Q ss_pred eC
Q 027375 177 NT 178 (224)
Q Consensus 177 ~s 178 (224)
+.
T Consensus 155 D~ 156 (335)
T TIGR02272 155 DI 156 (335)
T ss_pred CH
Confidence 53
No 40
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.08 E-value=5.5e-05 Score=59.02 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=72.2
Q ss_pred CccceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEE
Q 027375 94 NTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFI 173 (224)
Q Consensus 94 ~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i 173 (224)
.+.|+|+-.-.+.+|.....|+-. .-|-+|+++|++++...+ +|+.+ .++||.+....+.-.|+.... +++.++
T Consensus 31 DgmGFS~h~T~i~aGtet~~~Ykn-HlEAvyci~G~Gev~~~~-~G~~~--~i~pGt~YaLd~hD~H~lra~--~dm~~v 104 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHYKN-HLEAVYCIEGEGEVEDLD-TGEVH--PIKPGTMYALDKHDRHYLRAK--TDMRLV 104 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEecC-ceEEEEEEeceEEEEEcc-CCcEE--EcCCCeEEecCCCccEEEEec--CCEEEE
Confidence 356899999999999999999874 499999999999998875 47765 999999999999999999875 399999
Q ss_pred EEEeCCCCcc
Q 027375 174 PIFNTQNPGV 183 (224)
Q Consensus 174 ~~~~s~~pg~ 183 (224)
|+||.+--|.
T Consensus 105 CVFnPpltG~ 114 (126)
T PF06339_consen 105 CVFNPPLTGR 114 (126)
T ss_pred EEcCCCCcCc
Confidence 9998754443
No 41
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.08 E-value=7.4e-06 Score=64.82 Aligned_cols=67 Identities=24% Similarity=0.303 Sum_probs=53.4
Q ss_pred CCccCC-CccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEE
Q 027375 107 VGGINP-PHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIF 176 (224)
Q Consensus 107 pgg~~p-pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 176 (224)
.|++.+ -|||.++.|++.|++|+..+.+..++|... .+.+||++++|+|+-|.-.. ..-+..++.++
T Consensus 51 ~g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~el--~v~~GDvlliPAGvGH~rl~-sS~DF~VvGaY 118 (163)
T COG4297 51 RGGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQEL--EVGEGDVLLIPAGVGHCRLH-SSADFQVVGAY 118 (163)
T ss_pred cccccccccccCCcceEEEEecceeEEEecCCCCcee--eecCCCEEEEecCccccccc-CCCCeEEEccc
Confidence 355543 589999999999999999999998888865 99999999999999996533 34455555554
No 42
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.96 E-value=6.7e-05 Score=59.25 Aligned_cols=94 Identities=17% Similarity=0.219 Sum_probs=52.1
Q ss_pred CceEEEeccCC-CCCcCccceEEEEE-EEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCC-CEEEEc
Q 027375 79 KRAVTFGDVFG-FPAVNTQGVSLFRL-DLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPG-MVFLIP 155 (224)
Q Consensus 79 g~~v~~~~~~~-fP~l~~~gis~~~v-~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~G-Dv~viP 155 (224)
.|.++.+.... .|- . --.+..+ ..++|....+|.|....|+++|++|++.+.+.+..++ ....|... ..+.+|
T Consensus 15 RG~L~~~e~~~~ipf-~--i~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ip 90 (131)
T PF05523_consen 15 RGSLSVIERFDDIPF-E--IKRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIP 90 (131)
T ss_dssp TEEEEEEETTTSSSS------EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-
T ss_pred CCcEEEEeccCCCCC-C--ccEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEEC
Confidence 45566665542 333 1 1123333 3444545899999999999999999999998764333 34577555 599999
Q ss_pred CCCeeEEEecCCCCEEEEEEEeC
Q 027375 156 RALVHFQLNVGNEPATFIPIFNT 178 (224)
Q Consensus 156 ~G~~H~~~N~g~~~a~~i~~~~s 178 (224)
+|+.|.+.|.+++ +++++ +.+
T Consensus 91 pg~w~~~~~~s~~-svlLv-~as 111 (131)
T PF05523_consen 91 PGVWHGIKNFSED-SVLLV-LAS 111 (131)
T ss_dssp TT-EEEEE---TT--EEEE-EES
T ss_pred CchhhHhhccCCC-cEEEE-EcC
Confidence 9999999999777 66665 444
No 43
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.93 E-value=2.8e-05 Score=67.38 Aligned_cols=53 Identities=25% Similarity=0.246 Sum_probs=44.9
Q ss_pred CCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEec
Q 027375 107 VGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNV 165 (224)
Q Consensus 107 pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~ 165 (224)
+....++|||.. .|++||++|.+++.+ +++.+ .+++||++++|+|..|.+...
T Consensus 24 ~~~~~~~H~H~~-~ei~~v~~G~~~~~i---~~~~~--~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 24 PQAAFPEHHHDF-HEIVIVEHGTGIHVF---NGQPY--TLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred ccccccccccCc-eeEEEEecCceeeEe---cCCcc--cccCCcEEEECCCccchhhhc
Confidence 445678999964 999999999999987 45644 999999999999999987664
No 44
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.92 E-value=3.8e-05 Score=66.97 Aligned_cols=72 Identities=28% Similarity=0.396 Sum_probs=46.5
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEE
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFI 173 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i 173 (224)
|.+..|+++.+|-..|||+|. +++-+||++|++..+ +.+.-.+-|.+|..+..|+|..|+....+++.+.++
T Consensus 35 g~~~~~vkf~~g~~~pph~H~-~~~~~~Vi~G~~~~~----~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 35 GPSGMRVKFPAGFSSPPHIHN-ADYRGTVISGELHNG----DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI 106 (251)
T ss_dssp S-EEEEEEE-TT-EE--BEES-S-EEEEEEESEEEET----TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred CcceEEEEcCCCccCCCccee-eeEEEEEEEeEEEcC----CCcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence 788999999999999999996 699999999987653 223233569999999999999998877666555444
No 45
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.92 E-value=5.4e-05 Score=66.03 Aligned_cols=56 Identities=27% Similarity=0.225 Sum_probs=46.5
Q ss_pred cCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCC
Q 027375 106 DVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGN 167 (224)
Q Consensus 106 ~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~ 167 (224)
.|....++|||. .-|++||.+|++++.+ +++.+ .+++||++++|+|.+|.+...++
T Consensus 26 ~~~~~~~~H~h~-~~~l~~v~~G~~~~~i---~~~~~--~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 26 YPQDVFAEHTHE-FCELVMVWRGNGLHVL---NERPY--RITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCccccc-eEEEEEEecCcEEEEE---CCEEE--eecCCcEEEECCCCcccccccCC
Confidence 444557899996 5999999999999887 56755 99999999999999998765443
No 46
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.87 E-value=2.5e-05 Score=69.19 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=79.8
Q ss_pred CCCCccCcCCceEEEeccCCCCCcCccc-----eEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEE
Q 027375 70 KDPTTFDVFKRAVTFGDVFGFPAVNTQG-----VSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSK 144 (224)
Q Consensus 70 ~~~~~~~~~g~~v~~~~~~~fP~l~~~g-----is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~ 144 (224)
+.+......++ ++.+-.-+-|+|+++. +....--|.||-+.|.|.|.. .-+-+|++|++-..+++ |+. .
T Consensus 60 ~sgeli~~~~a-~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHsq-sAlRFvveG~Ga~T~Vd--Ger--~ 133 (351)
T COG3435 60 RSGELISAREA-VRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHNQ-SALRFVVEGKGAYTVVD--GER--T 133 (351)
T ss_pred HhhhccCcccc-eeEEEEecCCCCCCcccccHHHHhhhheecCcccCCcccccc-cceEEEEeccceeEeec--Cce--e
Confidence 34444333444 5666666778888763 223344678999999999964 89999999999888885 553 3
Q ss_pred EECCCCEEEEcCCCeeEEEecCCCCEEEEEEEeC
Q 027375 145 VLTPGMVFLIPRALVHFQLNVGNEPATFIPIFNT 178 (224)
Q Consensus 145 ~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s 178 (224)
.+++||.++.|++..|..-|.|++|++.+-.++.
T Consensus 134 ~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDi 167 (351)
T COG3435 134 PMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDI 167 (351)
T ss_pred eccCCCEEEccCceeccCCCCCCCceEEEcccch
Confidence 8999999999999999999999999999888764
No 47
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.85 E-value=5.9e-05 Score=53.68 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=44.1
Q ss_pred eEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEE
Q 027375 98 VSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQL 163 (224)
Q Consensus 98 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~ 163 (224)
++....+-.||. .+.++. ..|++||++|++++.. .+|+. .++++||.+++|+|..-.+.
T Consensus 7 ~~~g~w~~~pg~-~~~~~~--~~E~~~vleG~v~it~--~~G~~--~~~~aGD~~~~p~G~~~~w~ 65 (74)
T PF05899_consen 7 FSAGVWECTPGK-FPWPYP--EDEFFYVLEGEVTITD--EDGET--VTFKAGDAFFLPKGWTGTWE 65 (74)
T ss_dssp EEEEEEEEECEE-EEEEES--SEEEEEEEEEEEEEEE--TTTEE--EEEETTEEEEE-TTEEEEEE
T ss_pred EEEEEEEECCce-eEeeCC--CCEEEEEEEeEEEEEE--CCCCE--EEEcCCcEEEECCCCEEEEE
Confidence 566677788865 334444 3899999999999875 35775 49999999999999865443
No 48
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.75 E-value=6.7e-05 Score=61.04 Aligned_cols=57 Identities=14% Similarity=0.252 Sum_probs=49.8
Q ss_pred CCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCC
Q 027375 111 NPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNE 168 (224)
Q Consensus 111 ~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~ 168 (224)
...|.|++ .|+-|+++|++++-+-+.+++-++.-+++||.+++|+|+-|.+.-..+.
T Consensus 86 fEEhlh~d-eeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n 142 (179)
T KOG2107|consen 86 FEEHLHED-EEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSN 142 (179)
T ss_pred HHHhcCch-hheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchH
Confidence 57899987 9999999999999998888877777899999999999999988654433
No 49
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.68 E-value=0.0004 Score=59.14 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=64.5
Q ss_pred eEEEEEEEcCCc-cCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEE
Q 027375 98 VSLFRLDLDVGG-INPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIF 176 (224)
Q Consensus 98 is~~~v~l~pgg-~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 176 (224)
++-..+++.|+| .-.+-.-+++.-++||++|++++.+ +|+. ..|++|+..++|+|..|...|...+++.+..+-
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~---~G~t--h~l~eggyaylPpgs~~~~~N~~~~~~rfhw~r 135 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKA---EGKT--HALREGGYAYLPPGSGWTLRNAQKEDSRFHWIR 135 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEE---cCeE--EEeccCCeEEeCCCCcceEeeccCCceEEEEEe
Confidence 556678998877 5567777888999999999999988 5774 599999999999999999999999999988765
Q ss_pred e
Q 027375 177 N 177 (224)
Q Consensus 177 ~ 177 (224)
.
T Consensus 136 k 136 (264)
T COG3257 136 K 136 (264)
T ss_pred e
Confidence 4
No 50
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.59 E-value=0.00079 Score=54.12 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=49.1
Q ss_pred EEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEEeCCC
Q 027375 101 FRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFNTQN 180 (224)
Q Consensus 101 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~ 180 (224)
..+.-.|+.-.-.|..+. .|++|-++|...+.+++. |+.....+++||++..|++++|.-+-.. +.+-+++-....
T Consensus 36 VmvVGGPN~R~DyHine~-eE~FyQ~kG~m~Lkv~e~-g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr~R~ 111 (151)
T PF06052_consen 36 VMVVGGPNQRTDYHINET-EEFFYQLKGDMCLKVVED-GKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIERKRP 111 (151)
T ss_dssp EEEEESSB--SSEEE-SS--EEEEEEES-EEEEEEET-TEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE---
T ss_pred EEEEcCCCCCCccccCCc-ceEEEEEeCcEEEEEEeC-CceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEeccC
Confidence 344556777777888874 999999999999999874 6666779999999999999999887753 445555544444
Q ss_pred Cc
Q 027375 181 PG 182 (224)
Q Consensus 181 pg 182 (224)
+|
T Consensus 112 ~~ 113 (151)
T PF06052_consen 112 EG 113 (151)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 51
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.49 E-value=0.00028 Score=57.13 Aligned_cols=70 Identities=21% Similarity=0.174 Sum_probs=46.8
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEE
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIF 176 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 176 (224)
.|+...++++.. +.-|.-.-+|+.||++|++.+.. +|+.+ ..++||+++||+|.--.+... ..++++.+.
T Consensus 76 ~l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~---~G~~~--~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv~ 145 (152)
T PF06249_consen 76 RLSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI---DGQTV--TAKPGDVIFIPKGSTITFSTP--DYARFFYVT 145 (152)
T ss_dssp SSEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE---TTEEE--EEETT-EEEE-TT-EEEEEEE--EEEEEEEEE
T ss_pred ceeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE---CCEEE--EEcCCcEEEECCCCEEEEecC--CCEEEEEEE
Confidence 366666666653 34566667999999999998874 58865 999999999999986655443 234544443
No 52
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.44 E-value=0.00081 Score=61.09 Aligned_cols=87 Identities=16% Similarity=0.075 Sum_probs=63.3
Q ss_pred CceEEEeccCCCC-CcCccceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCC
Q 027375 79 KRAVTFGDVFGFP-AVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRA 157 (224)
Q Consensus 79 g~~v~~~~~~~fP-~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G 157 (224)
|..+..++..+=+ .+.+++.. ...+.+|....+|-|. ...+++|++|+++..+ +++.+ +.++||+|++|.-
T Consensus 232 g~~l~y~NP~TG~~~~pti~~~--~q~L~~G~~t~~~r~T-~s~Vf~VieG~G~s~i---g~~~~--~W~~gD~f~vPsW 303 (335)
T TIGR02272 232 GLKLRYVNPATGGYPMPTIGAF--IQLLPKGFRTATYRST-DATVFCVVEGRGQVRI---GDAVF--RFSPKDVFVVPSW 303 (335)
T ss_pred eEEEEEeCCCCCCCcchhHHHH--HhccCCCCCCCCcccc-ccEEEEEEeCeEEEEE---CCEEE--EecCCCEEEECCC
Confidence 4455666654433 34444444 3567888889999995 4899999999999998 46654 9999999999999
Q ss_pred CeeEEEecCCCCEEEEEE
Q 027375 158 LVHFQLNVGNEPATFIPI 175 (224)
Q Consensus 158 ~~H~~~N~g~~~a~~i~~ 175 (224)
..|...|. ++++++.+
T Consensus 304 ~~~~h~a~--~da~Lf~~ 319 (335)
T TIGR02272 304 HPVRFEAS--DDAVLFSF 319 (335)
T ss_pred CcEecccC--CCeEEEEe
Confidence 88877663 45665543
No 53
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.24 E-value=0.0033 Score=50.77 Aligned_cols=70 Identities=20% Similarity=0.205 Sum_probs=49.8
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEE
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIF 176 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 176 (224)
.+++...+.++ ...||--. -+|+.||++|++.+.. +|+.. .-++||+++||+|.---+--.|. +.++.+.
T Consensus 99 ~l~aG~m~~~~-~tf~wtl~--yDe~d~VlEGrL~V~~---~g~tv--~a~aGDvifiPKgssIefst~ge--a~flyvt 168 (176)
T COG4766 99 RLGAGLMEMKN-TTFPWTLN--YDEIDYVLEGRLHVRI---DGRTV--IAGAGDVIFIPKGSSIEFSTTGE--AKFLYVT 168 (176)
T ss_pred ccccceeeecc-ccCcceec--ccceeEEEeeeEEEEE---cCCeE--ecCCCcEEEecCCCeEEEeccce--EEEEEEE
Confidence 35555666666 55555444 4899999999999987 45543 88999999999998766655444 5555443
No 54
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.18 E-value=0.0068 Score=50.16 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=55.7
Q ss_pred CCccCCCccCCCC-CEEEEEEeCeEEEEEEecC------CeEEEEEECCC--CEEEEcCCCeeEEEecCCCCEEEEEE
Q 027375 107 VGGINPPHTHPRG-TEAGIVTRGTLLVGIVTTN------NTFFSKVLTPG--MVFLIPRALVHFQLNVGNEPATFIPI 175 (224)
Q Consensus 107 pgg~~ppH~Hp~a-~Ei~yVl~G~~~v~~~~~~------~~~~~~~L~~G--Dv~viP~G~~H~~~N~g~~~a~~i~~ 175 (224)
||-++.+|+|..- .+++.|++|++....+|-. |+....++.+- ..+.||+|..|-++|.+++..+++.+
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~ 131 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKV 131 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEEe
Confidence 8889999999876 8999999999999888732 34445566655 79999999999999999887544443
No 55
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=97.16 E-value=0.0074 Score=50.07 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=58.6
Q ss_pred cCCccCCCccCC--CCCEEEEEEeCeEEEEEEecC------CeEEEEEECC--CCEEEEcCCCeeEEEecCCCCEEEEEE
Q 027375 106 DVGGINPPHTHP--RGTEAGIVTRGTLLVGIVTTN------NTFFSKVLTP--GMVFLIPRALVHFQLNVGNEPATFIPI 175 (224)
Q Consensus 106 ~pgg~~ppH~Hp--~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~L~~--GDv~viP~G~~H~~~N~g~~~a~~i~~ 175 (224)
.+|.+..+|.|. ....+++|++|++...++|-. |+.....|.+ +..++||+|+.|.+.+.+++ +.++-.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence 568889999983 358999999999999998742 5666678877 66999999999999998866 444443
Q ss_pred EeC-CCCcce
Q 027375 176 FNT-QNPGVS 184 (224)
Q Consensus 176 ~~s-~~pg~~ 184 (224)
.+. -+|+.+
T Consensus 131 ~~~~y~p~~e 140 (176)
T TIGR01221 131 CTDYYAPEYE 140 (176)
T ss_pred CCCCcCcccc
Confidence 333 355543
No 56
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=97.14 E-value=0.0011 Score=51.40 Aligned_cols=61 Identities=13% Similarity=0.005 Sum_probs=46.4
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEe
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLN 164 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N 164 (224)
.+......-.||. +|++-...|+.++|+|++++.- .+|+.+ ++++||++++|+|..=.+.-
T Consensus 44 ~~~~GiWe~TpG~---~r~~y~~~E~chil~G~v~~T~--d~Ge~v--~~~aGD~~~~~~G~~g~W~V 104 (116)
T COG3450 44 QVETGIWECTPGK---FRVTYDEDEFCHILEGRVEVTP--DGGEPV--EVRAGDSFVFPAGFKGTWEV 104 (116)
T ss_pred CeeEeEEEecCcc---ceEEcccceEEEEEeeEEEEEC--CCCeEE--EEcCCCEEEECCCCeEEEEE
Confidence 3556666666665 5666556999999999998764 356755 99999999999998765543
No 57
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=97.00 E-value=0.0036 Score=51.93 Aligned_cols=79 Identities=15% Similarity=0.157 Sum_probs=55.9
Q ss_pred cCCccCCCccCCCC---CEEEEEEeCeEEEEEEec------CCeEEEEEECCCC--EEEEcCCCeeEEEecCCCCEEEEE
Q 027375 106 DVGGINPPHTHPRG---TEAGIVTRGTLLVGIVTT------NNTFFSKVLTPGM--VFLIPRALVHFQLNVGNEPATFIP 174 (224)
Q Consensus 106 ~pgg~~ppH~Hp~a---~Ei~yVl~G~~~v~~~~~------~~~~~~~~L~~GD--v~viP~G~~H~~~N~g~~~a~~i~ 174 (224)
.+|.+..+|+|..- ..++.|++|++...++|- -|+.....|.+++ .++||+|+.|.+.+.+++..+++-
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~ 130 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK 130 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence 35888999999764 589999999999999872 2677777887776 799999999999999776444443
Q ss_pred EEeCCCCcce
Q 027375 175 IFNTQNPGVS 184 (224)
Q Consensus 175 ~~~s~~pg~~ 184 (224)
+-+.-+|+.+
T Consensus 131 ~t~~y~p~~e 140 (176)
T PF00908_consen 131 VTNYYDPEDE 140 (176)
T ss_dssp ESS---GGGE
T ss_pred cCCccCcccc
Confidence 3223355544
No 58
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=96.98 E-value=0.016 Score=47.81 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=58.0
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCe--------EEEEEECCCCEEEEcCCCeeEEEecC-C
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNT--------FFSKVLTPGMVFLIPRALVHFQLNVG-N 167 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~--------~~~~~L~~GDv~viP~G~~H~~~N~g-~ 167 (224)
.+.+..+.-.||...+.|=|.++.=++.|++|+++-......+. .....+..|...+++.+.+|.+.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 47788889999999999999876678889999998776543221 11235678888888999999999986 8
Q ss_pred CCEEEEEEEeCC
Q 027375 168 EPATFIPIFNTQ 179 (224)
Q Consensus 168 ~~a~~i~~~~s~ 179 (224)
++++-+=++...
T Consensus 154 ~~avSLHvYspP 165 (175)
T PF05995_consen 154 EPAVSLHVYSPP 165 (175)
T ss_dssp S-EEEEEEEES-
T ss_pred CCEEEEEEcCCC
Confidence 899988888754
No 59
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.69 E-value=0.0069 Score=54.02 Aligned_cols=89 Identities=19% Similarity=0.215 Sum_probs=65.8
Q ss_pred cCCceEEEeccCC--CCCcCccceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEE
Q 027375 77 VFKRAVTFGDVFG--FPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLI 154 (224)
Q Consensus 77 ~~g~~v~~~~~~~--fP~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~vi 154 (224)
-.|..+..++..+ .+ ..+ |....--|.||-...+|-|.+ .-+.-|.+|++++.+ +|+.| ..++||+|++
T Consensus 241 ~dG~~~ryvNP~TGg~~-mpt--I~a~mqlL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~I---g~~rf--~~~~~D~fvV 311 (351)
T COG3435 241 FDGYKMRYVNPVTGGYA-MPT--IGAFMQLLPPGFHGKAHRHTD-STIYHVVEGSGYTII---GGERF--DWSAGDIFVV 311 (351)
T ss_pred CCcceEEEecCCCCCCc-Cch--HHHHHHhcCCcccCCceeccC-CEEEEEEecceeEEE---CCEEe--eccCCCEEEc
Confidence 4566666666533 11 111 333334577888888999976 778889999999988 57765 9999999999
Q ss_pred cCCCeeEEEecCCCCEEEEEE
Q 027375 155 PRALVHFQLNVGNEPATFIPI 175 (224)
Q Consensus 155 P~G~~H~~~N~g~~~a~~i~~ 175 (224)
|.=..|...|. .++++++++
T Consensus 312 PsW~~~~~~~g-s~da~LFsf 331 (351)
T COG3435 312 PSWAWHEHVNG-SEDAVLFSF 331 (351)
T ss_pred cCcceeecccC-CcceEEEec
Confidence 99999999884 778887764
No 60
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.26 E-value=0.023 Score=53.18 Aligned_cols=57 Identities=21% Similarity=0.184 Sum_probs=38.5
Q ss_pred CCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEE
Q 027375 112 PPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPI 175 (224)
Q Consensus 112 ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 175 (224)
..-.+-+++|++++.+|++++.. +-|++ .+++||.++||+|+.+.+.-. +++..+.+
T Consensus 139 ~~f~NaDGD~Li~~q~G~l~l~T--e~G~L---~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~ 195 (424)
T PF04209_consen 139 RAFRNADGDELIFPQQGSLRLET--EFGRL---DVRPGDYVVIPRGTRFRVELP--GPARGYII 195 (424)
T ss_dssp EEEEESSEEEEEEEEES-EEEEE--TTEEE---EE-TTEEEEE-TT--EEEE-S--SSEEEEEE
T ss_pred cceEcCCCCEEEEEEECCEEEEe--cCeeE---EEcCCeEEEECCeeEEEEEeC--CCceEEEE
Confidence 33456788999999999998865 34554 899999999999999998776 45554443
No 61
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.03 E-value=0.041 Score=46.45 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=48.3
Q ss_pred EEEEEEcC-CccCCCccCCCCCEEEEEEeCeEEEEEEecCC-----------------------------------eEEE
Q 027375 100 LFRLDLDV-GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNN-----------------------------------TFFS 143 (224)
Q Consensus 100 ~~~v~l~p-gg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~-----------------------------------~~~~ 143 (224)
...+-+.+ |...++|+.+ ..-++.+++|+=++.+..++. +.+.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 44566666 5568999987 478888999999988886430 2345
Q ss_pred EEECCCCEEEEcCCCeeEEEecCCCC
Q 027375 144 KVLTPGMVFLIPRALVHFQLNVGNEP 169 (224)
Q Consensus 144 ~~L~~GDv~viP~G~~H~~~N~g~~~ 169 (224)
.+|++||+++||+|..|+++|..+++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 79999999999999999999984444
No 62
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=95.83 E-value=0.065 Score=45.92 Aligned_cols=87 Identities=13% Similarity=0.041 Sum_probs=64.1
Q ss_pred cCCceEEEeccCCCCCcCccceEEEEEEEcCCccCCC-ccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEc
Q 027375 77 VFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPP-HTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIP 155 (224)
Q Consensus 77 ~~g~~v~~~~~~~fP~l~~~gis~~~v~l~pgg~~pp-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP 155 (224)
..|...+.+..++. ...|-+..+.++||+.+|. -+|- -+-=+||++|++...+ |+.. ..+++||.+..-
T Consensus 165 tdg~~attv~P~d~----r~Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrL---n~dw--v~V~aGD~mwm~ 234 (264)
T COG3257 165 TDGVIATTVLPKEL----RFDMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRL---NNNW--VPVEAGDYIWMG 234 (264)
T ss_pred CCCeEEEeeCcccc----CcceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEee---cCce--EEeecccEEEee
Confidence 34555555544443 3378999999999999874 4663 2445899999999988 3444 499999999999
Q ss_pred CCCeeEEEecCCCCEEEE
Q 027375 156 RALVHFQLNVGNEPATFI 173 (224)
Q Consensus 156 ~G~~H~~~N~g~~~a~~i 173 (224)
+-.+.+.+..|......+
T Consensus 235 A~cpQacyagG~g~frYL 252 (264)
T COG3257 235 AYCPQACYAGGRGAFRYL 252 (264)
T ss_pred ccChhhhccCCCCceEEE
Confidence 999999888877754444
No 63
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=95.80 E-value=0.065 Score=45.93 Aligned_cols=75 Identities=21% Similarity=0.327 Sum_probs=46.1
Q ss_pred EEEEcCCccCCCccCCCCCEEEEEEe-CeEEEEEEecC----------------CeEE------EEEECCCCEEEEcCCC
Q 027375 102 RLDLDVGGINPPHTHPRGTEAGIVTR-GTLLVGIVTTN----------------NTFF------SKVLTPGMVFLIPRAL 158 (224)
Q Consensus 102 ~v~l~pgg~~ppH~Hp~a~Ei~yVl~-G~~~v~~~~~~----------------~~~~------~~~L~~GDv~viP~G~ 158 (224)
.+-+.+|+..|.|.|..-.|=++-.- |.+.+.+...+ |+.+ ..+|+||+.+-+++|.
T Consensus 91 im~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~ 170 (225)
T PF07385_consen 91 IMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGI 170 (225)
T ss_dssp EEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTE
T ss_pred heeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCC
Confidence 36778999999999988888777765 57766665432 1111 2589999999999999
Q ss_pred eeEEEecCCCCEEEEEEEeC
Q 027375 159 VHFQLNVGNEPATFIPIFNT 178 (224)
Q Consensus 159 ~H~~~N~g~~~a~~i~~~~s 178 (224)
.|+++..+.. +++.=+++
T Consensus 171 yH~Fw~e~g~--vLigEVSt 188 (225)
T PF07385_consen 171 YHWFWGEGGD--VLIGEVST 188 (225)
T ss_dssp EEEEEE-TTS--EEEEEEEE
T ss_pred eeeEEecCCC--EEEEeeec
Confidence 9999875444 44444443
No 64
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=95.39 E-value=0.14 Score=47.92 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=46.1
Q ss_pred CCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEEe
Q 027375 111 NPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFN 177 (224)
Q Consensus 111 ~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~ 177 (224)
...-.+-+++|++++.+|++.+... -|+. .+++||+++||+|+.+.+.-.+.....++..+.
T Consensus 140 ~~~f~NaDGD~Livpq~G~l~i~TE--fG~L---~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g 201 (429)
T TIGR01015 140 NRAFYNADGDFLIVPQQGALLITTE--FGRL---LVEPNEICVIPRGVRFRVTVLEPARGYICEVYG 201 (429)
T ss_pred cceeeccCCCEEEEEEeCcEEEEEe--ccce---EecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence 3444566889999999999998753 3654 899999999999999988765543344444444
No 65
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=95.38 E-value=0.074 Score=46.44 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=36.3
Q ss_pred CCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCC
Q 027375 119 GTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGN 167 (224)
Q Consensus 119 a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~ 167 (224)
.-++.++++|++.+.+ +++.+ .+++||++++|+|.+|......+
T Consensus 49 ~~~i~~~~~G~~~~~~---~~~~~--~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 49 GYILNLTIRGQGVIFN---GGRAF--VCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred ceEEEEEEeccEEEec---CCeeE--ecCCCCEEEECCCCceeeccCCC
Confidence 4688999999999865 46654 99999999999999998766443
No 66
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=95.32 E-value=0.16 Score=47.63 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=44.0
Q ss_pred CCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEE
Q 027375 111 NPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPI 175 (224)
Q Consensus 111 ~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 175 (224)
...-.+-+++|++++.+|++.+.. +-|+. .+++||+++||+|+.+.+.- .++++..+.+
T Consensus 146 ~~~f~NaDGD~Livpq~G~l~i~T--EfG~L---~v~pgei~VIPRG~~frv~l-~~gp~rgyi~ 204 (438)
T PRK05341 146 DRYFYNADGELLIVPQQGRLRLAT--ELGVL---DVEPGEIAVIPRGVKFRVEL-PDGPARGYVC 204 (438)
T ss_pred cceeecCCCCEEEEEEeCCEEEEE--eccce---EecCCCEEEEcCccEEEEec-CCCCeeEEEE
Confidence 344456688999999999999875 33654 89999999999999988863 2345554443
No 67
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.05 E-value=0.057 Score=40.15 Aligned_cols=74 Identities=20% Similarity=0.225 Sum_probs=34.0
Q ss_pred EEEcCCccCCCccCCCCC--EEEEEE--eCeEEEEEEecC------------------CeEEEEEECCCCEEEEcCCCee
Q 027375 103 LDLDVGGINPPHTHPRGT--EAGIVT--RGTLLVGIVTTN------------------NTFFSKVLTPGMVFLIPRALVH 160 (224)
Q Consensus 103 v~l~pgg~~ppH~Hp~a~--Ei~yVl--~G~~~v~~~~~~------------------~~~~~~~L~~GDv~viP~G~~H 160 (224)
...++|+..++|.|+++. =+.||- ++...+.+.+++ ...+....++||+++||.-+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 356789999999998742 223332 223223333321 1233457899999999999999
Q ss_pred EEEecCCCCEEEEEEE
Q 027375 161 FQLNVGNEPATFIPIF 176 (224)
Q Consensus 161 ~~~N~g~~~a~~i~~~ 176 (224)
...-...+.-++-.+|
T Consensus 85 ~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 85 GVPPNNSDEERISISF 100 (101)
T ss_dssp EE----SSS-EEEEEE
T ss_pred eccCcCCCCCEEEEEc
Confidence 8855433333443344
No 68
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=94.99 E-value=0.15 Score=43.03 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=69.8
Q ss_pred cCcCCceEEEeccCCCCCcCccceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEE
Q 027375 75 FDVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLI 154 (224)
Q Consensus 75 ~~~~g~~v~~~~~~~fP~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~vi 154 (224)
.-..|+.+..+....-+ ...++++.+.||...|-|+|- ..|...|++|.. .|++| ++.+||..--
T Consensus 110 W~~~G~rv~~v~l~~dd-----s~~V~llki~~g~s~P~HtH~-G~E~t~vl~G~~----sde~G-----~y~vgD~~~~ 174 (216)
T COG3806 110 WLGPGGRVEPVRLPTDD-----SRRVALLKIEPGRSFPDHTHV-GIERTAVLEGAF----SDENG-----EYLVGDFTLA 174 (216)
T ss_pred eecCCcceeecccCCCC-----CceeEEEEeccCccccccccc-ceEEEEEEeecc----ccCCC-----ccccCceeec
Confidence 45567766666544322 478999999999999999996 599999999974 34445 5689999999
Q ss_pred cCCCeeEEEecCCCCEEEEEEEeCC
Q 027375 155 PRALVHFQLNVGNEPATFIPIFNTQ 179 (224)
Q Consensus 155 P~G~~H~~~N~g~~~a~~i~~~~s~ 179 (224)
+.++-|.-.-..+.++..++++.-+
T Consensus 175 d~~v~H~piv~~~~eClcl~al~~~ 199 (216)
T COG3806 175 DGTVQHSPIVLPPGECLCLAALDGP 199 (216)
T ss_pred CCccccccccCCCCCceEEEEcCCC
Confidence 9999998666677888888887643
No 69
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=94.93 E-value=0.26 Score=44.31 Aligned_cols=66 Identities=20% Similarity=0.151 Sum_probs=42.0
Q ss_pred EEEEEEcCCc--cCCCccCCCCCEEEEEEeCeEEEEEEecC------------------CeEEEEEECCCCEEEEcCCCe
Q 027375 100 LFRLDLDVGG--INPPHTHPRGTEAGIVTRGTLLVGIVTTN------------------NTFFSKVLTPGMVFLIPRALV 159 (224)
Q Consensus 100 ~~~v~l~pgg--~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~------------------~~~~~~~L~~GDv~viP~G~~ 159 (224)
.+.+.+.|++ ...+||=.. +=+++=++|+=+..+.... ......+|+|||++|+|+|.+
T Consensus 115 ~~n~Y~tp~g~~g~~~H~D~~-dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~ 193 (319)
T PF08007_consen 115 GANAYLTPPGSQGFGPHYDDH-DVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWW 193 (319)
T ss_dssp EEEEEEETSSBEESECEE-SS-EEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-E
T ss_pred ceEEEecCCCCCCccCEECCc-ccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCcc
Confidence 4445677877 688998754 5555567787776665421 012346999999999999999
Q ss_pred eEEEecC
Q 027375 160 HFQLNVG 166 (224)
Q Consensus 160 H~~~N~g 166 (224)
|.....+
T Consensus 194 H~~~~~~ 200 (319)
T PF08007_consen 194 HQAVTTD 200 (319)
T ss_dssp EEEEESS
T ss_pred CCCCCCC
Confidence 9999987
No 70
>PF12852 Cupin_6: Cupin
Probab=94.92 E-value=0.19 Score=41.23 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=34.5
Q ss_pred CEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEec
Q 027375 120 TEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNV 165 (224)
Q Consensus 120 ~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~ 165 (224)
.-+.+|++|+..+.+.+ .++. ..|++||++++|+|..|.....
T Consensus 36 ~~fh~V~~G~~~l~~~~-~~~~--~~L~~GDivllp~g~~H~l~~~ 78 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPG-GGEP--IRLEAGDIVLLPRGTAHVLSSD 78 (186)
T ss_pred eEEEEEECCeEEEEEcC-CCCe--EEecCCCEEEEcCCCCeEeCCC
Confidence 66778999999998632 1343 4999999999999999998544
No 71
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=94.78 E-value=0.16 Score=38.72 Aligned_cols=63 Identities=24% Similarity=0.215 Sum_probs=45.0
Q ss_pred CccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEc--CCCeeEEEecCC-CCEEEEE
Q 027375 108 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIP--RALVHFQLNVGN-EPATFIP 174 (224)
Q Consensus 108 gg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP--~G~~H~~~N~g~-~~a~~i~ 174 (224)
+...++|-|.+-+-+-||++|+++-. |+.|.. .+|++||+-++- +|+.|.-.|.++ +++..+-
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~~--~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQ 104 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGNR--GVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQ 104 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETTSEE--EEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCCCCe--eEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEE
Confidence 45568999977444458999998754 454553 489999988875 567999999887 6776654
No 72
>COG1741 Pirin-related protein [General function prediction only]
Probab=94.77 E-value=0.16 Score=45.12 Aligned_cols=70 Identities=24% Similarity=0.301 Sum_probs=51.0
Q ss_pred EEEEcCCccCCCccCCCCCEEE-EEEeCeEEEEEEecCCeEEEEEECCCCEEEEcC--CCeeEEEec--CCCCEEEEEEE
Q 027375 102 RLDLDVGGINPPHTHPRGTEAG-IVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPR--ALVHFQLNV--GNEPATFIPIF 176 (224)
Q Consensus 102 ~v~l~pgg~~ppH~Hp~a~Ei~-yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~--G~~H~~~N~--g~~~a~~i~~~ 176 (224)
..++.||.-.+||-|.+ .|++ ||++|+++-. |+.|.. .++++||+-++-+ |+.|.-.|. .++++..+-..
T Consensus 48 ~~~~~pG~~f~pHPHrg-~etvTyvl~G~i~Hr--DS~Gn~--~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlW 122 (276)
T COG1741 48 PDVLAPGRGFPPHPHRG-LETVTYVLDGEIEHR--DSLGNK--GVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLW 122 (276)
T ss_pred cccccCCCcCCCCCCCC-cEEEEEEEccEEEEe--ecCCce--eeecccceeEEcCCCceeecccCCccCCCccceeeee
Confidence 34688999999999977 5555 8999998865 344543 4899999988865 579998886 33355555444
No 73
>PLN02658 homogentisate 1,2-dioxygenase
Probab=94.76 E-value=0.26 Score=46.22 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=42.8
Q ss_pred CccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEE
Q 027375 113 PHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPI 175 (224)
Q Consensus 113 pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~ 175 (224)
.-.+-+++|++++.+|++.+.. +-|++ .+++||+++||+|+.+.+.-. +++++.+.+
T Consensus 141 ~f~NaDGD~Livpq~G~l~i~T--EfG~L---~v~pgei~VIPRG~~frv~l~-~gp~rgyv~ 197 (435)
T PLN02658 141 AFCNADGDFLIVPQQGRLWIKT--ELGKL---QVSPGEIVVIPRGFRFAVDLP-DGPSRGYVL 197 (435)
T ss_pred eeecCCCCEEEEEEeCCEEEEE--eccce---EecCCCEEEecCccEEEEecC-CCCeeEEEE
Confidence 3456688999999999998875 33664 889999999999999877642 345444433
No 74
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.72 E-value=0.15 Score=44.93 Aligned_cols=61 Identities=11% Similarity=-0.014 Sum_probs=47.8
Q ss_pred CCccCCCccC-CCCCEEEEEEeCeEEEEEEecCCeE-EEEEECC-CCEEEEcCCCeeEEEecCC
Q 027375 107 VGGINPPHTH-PRGTEAGIVTRGTLLVGIVTTNNTF-FSKVLTP-GMVFLIPRALVHFQLNVGN 167 (224)
Q Consensus 107 pgg~~ppH~H-p~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~L~~-GDv~viP~G~~H~~~N~g~ 167 (224)
|++...+|.| ++.-|.+.|++|++.+.+.++++.. ....+.+ ++.-++|++..|......+
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~ 83 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASD 83 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCC
Confidence 6688899999 6778999999999999998877743 2345555 4565799999999987643
No 75
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=94.53 E-value=0.29 Score=42.81 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=46.7
Q ss_pred ceEEEEEEEcCCccC-----CCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCC
Q 027375 97 GVSLFRLDLDVGGIN-----PPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGN 167 (224)
Q Consensus 97 gis~~~v~l~pgg~~-----ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~ 167 (224)
++.+.++...+..+. ..|.+.+.-.++++++|++.+.. +|+.+ .+++||+++++.+.+|.+.-.++
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~---~g~~~--~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ---DDRQV--QLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE---CCeEE--EEcCCCEEEEECCCCcEeecCCC
Confidence 366666666665432 23444454567788999999876 56754 99999999999999997765444
No 76
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=94.38 E-value=0.03 Score=48.98 Aligned_cols=77 Identities=22% Similarity=0.232 Sum_probs=45.1
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEE
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIF 176 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 176 (224)
++.-..+.++.|.-..+|+|+. .|-.||++|++.++.-...+ ...|.+|-.+.-|.+..|... .++++++++...
T Consensus 170 ~~~gll~kLPagf~g~i~~h~~-~eraVvI~G~~~~~~~~~~~---~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyIRt 244 (251)
T PF14499_consen 170 QYTGLLLKLPAGFTGRIHTHAS-NERAVVISGELDYQSYGASN---FGTLDPGSYFGSPGHITHGIF-ITEDECVLYIRT 244 (251)
T ss_dssp EE-EEEEE-SSEE--SEEE--S--EEEEEEEEEEEETTEEEET---TEEEEE-TT-EE--E-------EESS-EEEEEEE
T ss_pred ceeeEEEEcCCCCcCceeccCC-ceEEEEEEeEEEEeecccCC---CccccCCcccccCCccccccc-ccCCCEEEEEEE
Confidence 3556667777777789999975 89999999999986532212 259999999999999999998 778888888765
Q ss_pred eC
Q 027375 177 NT 178 (224)
Q Consensus 177 ~s 178 (224)
+.
T Consensus 245 dG 246 (251)
T PF14499_consen 245 DG 246 (251)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 77
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=94.32 E-value=0.3 Score=41.07 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=47.7
Q ss_pred EEEEEcCCccCCCccCCCCCEEEEEE-eCeEEEEEEecC----------------CeEE------EEEECCCCEEEEcCC
Q 027375 101 FRLDLDVGGINPPHTHPRGTEAGIVT-RGTLLVGIVTTN----------------NTFF------SKVLTPGMVFLIPRA 157 (224)
Q Consensus 101 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl-~G~~~v~~~~~~----------------~~~~------~~~L~~GDv~viP~G 157 (224)
-.+-+.+|+..|+|.|++-.|=++=- .|++.+.+...+ |+.. ...|+||+.+.+|+|
T Consensus 89 KiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg 168 (225)
T COG3822 89 KIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPG 168 (225)
T ss_pred eeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCC
Confidence 34567899999999998654433222 234444332211 1110 248999999999999
Q ss_pred CeeEEEecCCCCEEEEEEEeCC
Q 027375 158 LVHFQLNVGNEPATFIPIFNTQ 179 (224)
Q Consensus 158 ~~H~~~N~g~~~a~~i~~~~s~ 179 (224)
+.|+++.-+.. +++.-.++-
T Consensus 169 ~~HsFwae~g~--vlvgEvSsv 188 (225)
T COG3822 169 LYHSFWAEEGG--VLVGEVSSV 188 (225)
T ss_pred ceeeeeecCCc--EEEEEEeec
Confidence 99999975433 444444443
No 78
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=94.11 E-value=0.47 Score=38.58 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=47.9
Q ss_pred CCCCCcCc-c-ceEEEEEEEcCCccCCCccCCCCCEEE----EEE-eCeEEEEEEecCCeEEEEEECCCCEEEEcCCCee
Q 027375 88 FGFPAVNT-Q-GVSLFRLDLDVGGINPPHTHPRGTEAG----IVT-RGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVH 160 (224)
Q Consensus 88 ~~fP~l~~-~-gis~~~v~l~pgg~~ppH~Hp~a~Ei~----yVl-~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H 160 (224)
+++|.... . -..+....+.||+.+.||.-+....+- .++ .+...+.+ +++. ...++|+++++.-...|
T Consensus 68 ~~lp~~~~~~~~~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v---~~~~--~~w~~G~~~~fD~s~~H 142 (163)
T PF05118_consen 68 EQLPGVTGGCPLGRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRV---GGET--RHWREGECWVFDDSFEH 142 (163)
T ss_dssp CCSHHHHCSTTCEEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEE---TTEE--EB--CTEEEEE-TTS-E
T ss_pred HhCcccccccchhhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEE---CCeE--EEeccCcEEEEeCCEEE
Confidence 44554432 2 233455578999999999886433322 222 13344444 3554 48899999999999999
Q ss_pred EEEecCCCCEEEEE
Q 027375 161 FQLNVGNEPATFIP 174 (224)
Q Consensus 161 ~~~N~g~~~a~~i~ 174 (224)
...|.|+++-+.+.
T Consensus 143 ~~~N~~~~~Rv~L~ 156 (163)
T PF05118_consen 143 EVWNNGDEDRVVLI 156 (163)
T ss_dssp EEEESSSS-EEEEE
T ss_pred EEEeCCCCCEEEEE
Confidence 99999988755544
No 79
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=93.72 E-value=0.11 Score=44.33 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=46.2
Q ss_pred cCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEe
Q 027375 106 DVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLN 164 (224)
Q Consensus 106 ~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N 164 (224)
.|+.-.-.|..+. .|++|=.+|....-+++. ++....++++||++..|..+.|.-+.
T Consensus 41 GPN~RkdyHieeg-eE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPqR 97 (279)
T KOG3995|consen 41 GPNTRKDYHIEEG-EEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQR 97 (279)
T ss_pred CCCcccccccCCc-chhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChhh
Confidence 4555556788775 999999999999999975 55556799999999999999996543
No 80
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=93.35 E-value=0.51 Score=39.97 Aligned_cols=87 Identities=22% Similarity=0.234 Sum_probs=62.7
Q ss_pred CcCccceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCC----------eEEEE------EE-CCCC-EEE
Q 027375 92 AVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNN----------TFFSK------VL-TPGM-VFL 153 (224)
Q Consensus 92 ~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~----------~~~~~------~L-~~GD-v~v 153 (224)
...+..+++..+-+.||..+|+|=||+-+=+.-|+.|++.+.-.+--. +.... ++ .+++ .+.
T Consensus 38 iyE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL 117 (200)
T PF07847_consen 38 IYEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVL 117 (200)
T ss_pred EEECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEE
Confidence 344446899999999999999999999888888999999987664210 01001 12 2334 444
Q ss_pred EcCC--CeeEEEecCCCCEEEEEEEeCC
Q 027375 154 IPRA--LVHFQLNVGNEPATFIPIFNTQ 179 (224)
Q Consensus 154 iP~G--~~H~~~N~g~~~a~~i~~~~s~ 179 (224)
-|+. -+|.+.+.+ +++.++-++...
T Consensus 118 ~P~~ggNiH~f~a~~-~p~AflDIL~PP 144 (200)
T PF07847_consen 118 YPTSGGNIHEFTALT-GPCAFLDILAPP 144 (200)
T ss_pred ccCCCCeeEEEEeCC-CCeEEEEEccCC
Confidence 5654 899999986 899999998753
No 81
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=92.86 E-value=0.66 Score=39.26 Aligned_cols=79 Identities=22% Similarity=0.190 Sum_probs=45.5
Q ss_pred EEEEEEEcCCccCCCccCCCC--CEEEEEE--eCeEEEEEEecCC------------------eEEEEEECCCCEEEEcC
Q 027375 99 SLFRLDLDVGGINPPHTHPRG--TEAGIVT--RGTLLVGIVTTNN------------------TFFSKVLTPGMVFLIPR 156 (224)
Q Consensus 99 s~~~v~l~pgg~~ppH~Hp~a--~Ei~yVl--~G~~~v~~~~~~~------------------~~~~~~L~~GDv~viP~ 156 (224)
.+-...+.+|+....|.||++ +=..||. +|.....+.++.- ......-++||+++||.
T Consensus 97 ~~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS 176 (201)
T TIGR02466 97 KAWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFES 176 (201)
T ss_pred eEeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECC
Confidence 344567789999999999985 2223443 1212222222110 01112448999999999
Q ss_pred CCeeEEEecCCCCEEEEEEEe
Q 027375 157 ALVHFQLNVGNEPATFIPIFN 177 (224)
Q Consensus 157 G~~H~~~N~g~~~a~~i~~~~ 177 (224)
-+.|...-...+.-++-.+||
T Consensus 177 ~L~H~v~p~~~~~~RISiSFN 197 (201)
T TIGR02466 177 WLRHEVPPNESEEERISVSFN 197 (201)
T ss_pred CCceecCCCCCCCCEEEEEEe
Confidence 999987554333334444554
No 82
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=92.82 E-value=0.95 Score=33.78 Aligned_cols=65 Identities=17% Similarity=0.101 Sum_probs=41.0
Q ss_pred EEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEE
Q 027375 104 DLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIF 176 (224)
Q Consensus 104 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 176 (224)
.+.||. .+....+.|++-|++|++++.+- |..-.+++++|+.|.+|++.--.++-. ++...+|.+
T Consensus 29 Vm~pGe---Y~F~T~~~E~M~vvsG~l~V~lp---g~~ew~~~~aGesF~VpanssF~v~v~--~~~~Y~C~y 93 (94)
T PF06865_consen 29 VMLPGE---YTFGTSAPERMEVVSGELEVKLP---GEDEWQTYSAGESFEVPANSSFDVKVK--EPTAYLCSY 93 (94)
T ss_dssp EE-SEC---EEEEESS-EEEEEEESEEEEEET---T-SS-EEEETT-EEEE-TTEEEEEEES--S-EEEEEEE
T ss_pred EEeeeE---EEEcCCCCEEEEEEEeEEEEEcC---CCcccEEeCCCCeEEECCCCeEEEEEC--cceeeEEEe
Confidence 345554 33334468999999999999984 322136899999999999987766653 555555543
No 83
>PRK10579 hypothetical protein; Provisional
Probab=92.70 E-value=1 Score=33.59 Aligned_cols=53 Identities=23% Similarity=0.220 Sum_probs=39.8
Q ss_pred CCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEE
Q 027375 117 PRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIP 174 (224)
Q Consensus 117 p~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~ 174 (224)
..+.|++-|++|++++.+- |..-.+++++|+.|-+|.+.---++.. +....+|
T Consensus 39 T~~~E~MeivsG~l~V~Lp---g~~ew~~~~aG~sF~VpanssF~l~v~--~~t~Y~C 91 (94)
T PRK10579 39 TAEPEEMTVISGALNVLLP---GATDWQVYEAGEVFNVPGHSEFHLQVA--EPTSYLC 91 (94)
T ss_pred CCCcEEEEEEeeEEEEECC---CCcccEEeCCCCEEEECCCCeEEEEEC--cceeeEE
Confidence 4478999999999999984 322246999999999999987766653 3444444
No 84
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=92.54 E-value=0.24 Score=36.80 Aligned_cols=29 Identities=28% Similarity=0.532 Sum_probs=21.2
Q ss_pred eEEEEEECCCCEEEEcCCCeeEEEecCCC
Q 027375 140 TFFSKVLTPGMVFLIPRALVHFQLNVGNE 168 (224)
Q Consensus 140 ~~~~~~L~~GDv~viP~G~~H~~~N~g~~ 168 (224)
+.++.+-++||.+++|+|..|+..|.|..
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCce
Confidence 44556889999999999999999999864
No 85
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=92.47 E-value=0.68 Score=37.99 Aligned_cols=69 Identities=22% Similarity=0.253 Sum_probs=42.8
Q ss_pred eEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEe--cCC----eEEEEEECCCCEEEEcCCCeeEEEecCCC
Q 027375 98 VSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVT--TNN----TFFSKVLTPGMVFLIPRALVHFQLNVGNE 168 (224)
Q Consensus 98 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~--~~~----~~~~~~L~~GDv~viP~G~~H~~~N~g~~ 168 (224)
+++..+++.||...|+|-| +..-++=|+.|.-+-.+.- ..+ ....+...+|++- .-+|-+|.+.|.+..
T Consensus 73 ltV~~~t~~PG~~~p~HnH-~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sd 147 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNH-LMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSD 147 (191)
T ss_pred EEEEEEEeCCCcccCCccc-chheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCC
Confidence 7899999999999999999 4577777888865433321 110 0012345555555 333555655555544
No 86
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.12 E-value=2.2 Score=39.17 Aligned_cols=75 Identities=17% Similarity=0.116 Sum_probs=51.1
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEE
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIF 176 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 176 (224)
|+.+....+..+-....-..-+.+|++|+.+|++++... =|. .++++||..+||+|+....+-.+.+ +..+.+=
T Consensus 124 g~~i~~y~~n~sm~~~~f~NADge~Livpq~G~l~l~te--~G~---l~v~pgeiavIPRG~~frve~~~~~-~rgy~~E 197 (427)
T COG3508 124 GVAIHVYKVNESMTKRFFRNADGELLIVPQQGELRLKTE--LGV---LEVEPGEIAVIPRGTTFRVELKDGE-ARGYGCE 197 (427)
T ss_pred ceEEEEEEccccchhhhhhcCCCCEEEEeecceEEEEEe--ece---EEecCCcEEEeeCCceEEEEecCCc-eEEEEEe
Confidence 444444344333333555677889999999999987642 244 4899999999999999888775444 5555443
Q ss_pred e
Q 027375 177 N 177 (224)
Q Consensus 177 ~ 177 (224)
|
T Consensus 198 n 198 (427)
T COG3508 198 N 198 (427)
T ss_pred e
Confidence 3
No 87
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=91.95 E-value=1.1 Score=39.76 Aligned_cols=82 Identities=21% Similarity=0.200 Sum_probs=55.7
Q ss_pred ceEEEEEEEcCCc-c--CCCccCCCCCEEEE---EEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCE
Q 027375 97 GVSLFRLDLDVGG-I--NPPHTHPRGTEAGI---VTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPA 170 (224)
Q Consensus 97 gis~~~v~l~pgg-~--~ppH~Hp~a~Ei~y---Vl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a 170 (224)
.+-+....+.||+ . .|||.|.+..|..| +-++.-.+.+..+-++.....++-+|.++.|+=.+|.- .|..+-
T Consensus 174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g--~gt~~y 251 (276)
T PRK00924 174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSG--VGTSNY 251 (276)
T ss_pred cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecC--cCcccc
Confidence 5677777789999 3 69999997677544 22332223332221232225899999999999999976 467778
Q ss_pred EEEEEEeCCC
Q 027375 171 TFIPIFNTQN 180 (224)
Q Consensus 171 ~~i~~~~s~~ 180 (224)
.+|++.-.+|
T Consensus 252 ~fiw~m~gen 261 (276)
T PRK00924 252 TFIWGMAGEN 261 (276)
T ss_pred EEEEEecccC
Confidence 8888887666
No 88
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=91.51 E-value=1.4 Score=40.96 Aligned_cols=59 Identities=12% Similarity=0.068 Sum_probs=42.1
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEE
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQL 163 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~ 163 (224)
.+.+.++++..+. .+...+..++++|++|++++.. ++.. ..|++|+++++|++......
T Consensus 320 ~F~~~~~~l~~~~---~~~~~~~~~Illv~~G~~~i~~---~~~~--~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQP---TTLSQQSAAILFCVEGEAVLWK---GEQQ--LTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCce---EEecCCCcEEEEEEcceEEEEe---CCeE--EEECCCCEEEEeCCCccEEE
Confidence 3667777776542 2222245799999999999853 3443 48999999999998776655
No 89
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=90.79 E-value=2.2 Score=38.08 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=42.4
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEE
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQL 163 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~ 163 (224)
.+.+.++++..... ...+ +...+++|++|++++.. ++.. ..|++|+.+++|++......
T Consensus 234 ~F~~~~~~~~~~~~--~~~~-~~~~il~v~~G~~~i~~---~~~~--~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 234 YFSVYKWDISGKAE--FIQQ-QSALILSVLEGSGRIKS---GGKT--LPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CeEEEEEEeCCcee--eccC-CCcEEEEEEcceEEEEE---CCEE--EEEecccEEEEccCCccEEE
Confidence 57788888764321 1123 45789999999998854 3443 48999999999999866555
No 90
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=90.60 E-value=1.2 Score=33.26 Aligned_cols=68 Identities=18% Similarity=0.126 Sum_probs=42.2
Q ss_pred EEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEE
Q 027375 101 FRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIF 176 (224)
Q Consensus 101 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 176 (224)
..+.++||+.......+...-++||++|++.+. ++. ..+.+|+.+++..|..=.+.+.+ +.+.++..-
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-----~~~--~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~ 69 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-----GEE--DPLEAGQLVVLEDGDEIELTAGE-EGARFLLLG 69 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-----TTT--EEEETTEEEEE-SECEEEEEESS-SSEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-----CCc--ceECCCcEEEECCCceEEEEECC-CCcEEEEEE
Confidence 457888888643332233367899999998762 331 37899999999966555555543 667766543
No 91
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=90.19 E-value=4.4 Score=31.63 Aligned_cols=66 Identities=12% Similarity=-0.020 Sum_probs=41.6
Q ss_pred eEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCC
Q 027375 98 VSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNE 168 (224)
Q Consensus 98 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~ 168 (224)
+.+.++.....-.+...-+.+.--+.+.++|...+.. +++. ..+.+||+++++.+..+.....++.
T Consensus 34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~---~g~~--~~~~pg~~~l~d~~~~~~~~~~~~~ 99 (172)
T PF14525_consen 34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQ---GGRE--VELAPGDVVLLDPGQPYRLEFSAGC 99 (172)
T ss_pred EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEE---CCEE--EEEcCCeEEEEcCCCCEEEEECCCc
Confidence 5566666553332211111223445567788888776 4664 4999999999999999887655433
No 92
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.96 E-value=3.7 Score=37.87 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=50.7
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEE
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIF 176 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 176 (224)
.+.+.+++++.|...-.-.-+ ..-++.|++|++++...+ +.. ..+++||+++||+...-.+.. .+++...+-+|
T Consensus 332 eF~v~~~~v~~g~~~~~~~~~-~~SIllv~~G~g~l~~~t--~~~--~~v~rG~V~fI~a~~~i~~~~-~sd~~~~yrAf 405 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGVD-GPSILLVLKGSGILKTDT--DSK--ILVNRGDVLFIPANHPIHLSS-SSDPFLGYRAF 405 (411)
T ss_pred ceeEEEeecCCCceEEeecCC-CceEEEEEecceEEecCC--CCc--eeeccCcEEEEcCCCCceeec-cCcceeeeecc
Confidence 478888898886653333333 478999999999987632 333 489999999999997654433 34445444444
No 93
>PLN02288 mannose-6-phosphate isomerase
Probab=89.77 E-value=1.2 Score=41.60 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=40.7
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCC
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRAL 158 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~ 158 (224)
.+.+.++++.++.......+ +..++++|++|++++.. .+......+++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~---~~~~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLST---GSSEDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEec---CCccceEEEeceeEEEEeCCC
Confidence 57888888887754222223 35899999999999853 222212379999999999864
No 94
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=89.70 E-value=7.8 Score=30.83 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=56.8
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeC-eEEEEEEecCCeEEEEEE----CCCC--EEEEcCCCeeEEEecCCCC
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRG-TLLVGIVTTNNTFFSKVL----TPGM--VFLIPRALVHFQLNVGNEP 169 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G-~~~v~~~~~~~~~~~~~L----~~GD--v~viP~G~~H~~~N~g~~~ 169 (224)
..+....-|.++....+|.= +++|+.+...| .+++.+++++|+..+.+| .+|+ .++||+|.....+-.+...
T Consensus 40 ~~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~ 118 (139)
T PF06172_consen 40 ASTSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGD 118 (139)
T ss_dssp S-EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSS
T ss_pred cceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCCCC
Confidence 35666666888777766665 67999998888 799999999887655566 3454 7899999988776555556
Q ss_pred EEEEEEEeCCCCcce
Q 027375 170 ATFIPIFNTQNPGVS 184 (224)
Q Consensus 170 a~~i~~~~s~~pg~~ 184 (224)
-.+++..- -||+.
T Consensus 119 y~Lvsc~V--aPGF~ 131 (139)
T PF06172_consen 119 YSLVSCTV--APGFD 131 (139)
T ss_dssp EEEEEEEE--SSC--
T ss_pred EEEEEEEE--cCCCc
Confidence 55555443 46654
No 95
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=89.45 E-value=2.7 Score=30.51 Aligned_cols=59 Identities=12% Similarity=-0.041 Sum_probs=41.0
Q ss_pred ccCCCccCC-CCCEEEEEEeCeEEEEEEecCCeE--EEEEECCCCEEEEcCCCeeEEEecCC
Q 027375 109 GINPPHTHP-RGTEAGIVTRGTLLVGIVTTNNTF--FSKVLTPGMVFLIPRALVHFQLNVGN 167 (224)
Q Consensus 109 g~~ppH~Hp-~a~Ei~yVl~G~~~v~~~~~~~~~--~~~~L~~GDv~viP~G~~H~~~N~g~ 167 (224)
++...|.-. +.-..+-|++|++.+...++++.. ....+.+|+..+|++...|.+.-.++
T Consensus 14 ~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 14 ALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp GGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred HHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 455566442 223456799999999998875421 12478999999999999999998765
No 96
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.05 E-value=0.34 Score=45.99 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=42.9
Q ss_pred EEEcC-Cc-cCCCccCCCCCEEEEEEeCeEEEEEEecC-------------------C-eEEEEEECCCCEEEEcCCCee
Q 027375 103 LDLDV-GG-INPPHTHPRGTEAGIVTRGTLLVGIVTTN-------------------N-TFFSKVLTPGMVFLIPRALVH 160 (224)
Q Consensus 103 v~l~p-gg-~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~-------------------~-~~~~~~L~~GDv~viP~G~~H 160 (224)
+.|.| |. -.+|||-. -.-++.=++|+=...+.-+. | -++...|++||++|||+|.+|
T Consensus 321 vYLTPagSqGfaPHyDd-IeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IH 399 (629)
T KOG3706|consen 321 VYLTPAGSQGFAPHYDD-IEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIH 399 (629)
T ss_pred eeecCCCCCCCCCchhh-hhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCccee
Confidence 34444 44 38999984 35566677898776665432 1 123468999999999999999
Q ss_pred EEEecC
Q 027375 161 FQLNVG 166 (224)
Q Consensus 161 ~~~N~g 166 (224)
......
T Consensus 400 QA~t~~ 405 (629)
T KOG3706|consen 400 QADTPA 405 (629)
T ss_pred eccccc
Confidence 776543
No 97
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=87.64 E-value=6.7 Score=33.10 Aligned_cols=77 Identities=13% Similarity=0.012 Sum_probs=50.4
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeE-EEEEECCCCEEEEcCCCeeEEEecCCCCEEEEE
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTF-FSKVLTPGMVFLIPRALVHFQLNVGNEPATFIP 174 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~ 174 (224)
+.......+++|..+-..-. ....+++|++|.+.+...+++|+. ....+.+||++-+..+..+.....-.+++.++.
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd-~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~ 112 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGE-PADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRL 112 (230)
T ss_pred cceeeeEEECCCCEEECCCC-CCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEEE
Confidence 45666778888876543333 357889999999999988877753 345668999887665544433222234555543
No 98
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=87.50 E-value=2.6 Score=28.93 Aligned_cols=57 Identities=12% Similarity=0.003 Sum_probs=40.4
Q ss_pred EEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEe
Q 027375 103 LDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLN 164 (224)
Q Consensus 103 v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N 164 (224)
+.|.||....++-.. ...+-|.+|++-++. ++....+.|++||.+.+++|..-+...
T Consensus 2 ~~L~~g~~~~lr~~~--~~~l~v~~G~vWlT~---~g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAAA--GQRLRVESGRVWLTR---EGDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcCC--CcEEEEccccEEEEC---CCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 356677766666553 344899999988776 333334699999999999997665544
No 99
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=86.71 E-value=2.1 Score=29.53 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=33.0
Q ss_pred EEcCCccC-CCccCCCCCEEEEEEeCeEEEEEEecCCeE-EEEEECCCCEE
Q 027375 104 DLDVGGIN-PPHTHPRGTEAGIVTRGTLLVGIVTTNNTF-FSKVLTPGMVF 152 (224)
Q Consensus 104 ~l~pgg~~-ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~L~~GDv~ 152 (224)
++.+|..+ ..+-+ ...+.+|++|.+.+...+.+++. ....+.+||++
T Consensus 3 ~~~~g~~i~~~g~~--~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQGDP--CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEETTSB--ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred EECCCCEEEeCCCc--CCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence 45555543 23333 58999999999999998877753 24678888876
No 100
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=86.66 E-value=7.8 Score=31.66 Aligned_cols=53 Identities=9% Similarity=0.013 Sum_probs=37.4
Q ss_pred EEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCe-EEEEEECCCCEEEE
Q 027375 101 FRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNT-FFSKVLTPGMVFLI 154 (224)
Q Consensus 101 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~L~~GDv~vi 154 (224)
....+++|..+-..-. ....+.+|++|.+.+...+.+|+ .....+.+||++-.
T Consensus 21 ~~~~~~kg~~l~~~g~-~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 21 HIHKYPAKSTLIHAGE-KAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 74 (211)
T ss_pred eEEEeCCCCEEEeCCC-CCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence 4567777776543323 34789999999999988776664 33457899999844
No 101
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=85.41 E-value=7.6 Score=35.12 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=43.1
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEe
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLN 164 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N 164 (224)
.+++.++++..-.. -.+. +...+++|++|++++.. +++.+ .|++|+.+++|+...-+..-
T Consensus 241 ~F~l~~~~i~~~~~-~~~~--~~~~il~v~eG~~~l~~---~~~~~--~l~~G~s~~ipa~~~~~~i~ 300 (312)
T COG1482 241 DFALYKWDISGTAE-FIKQ--ESFSILLVLEGEGTLIG---GGQTL--KLKKGESFFIPANDGPYTIE 300 (312)
T ss_pred ceEEEEEeccChhh-hccC--CCcEEEEEEcCeEEEec---CCEEE--EEcCCcEEEEEcCCCcEEEE
Confidence 57788887765111 1111 25899999999999875 35654 99999999999996655543
No 102
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=84.66 E-value=19 Score=31.59 Aligned_cols=97 Identities=21% Similarity=0.181 Sum_probs=50.9
Q ss_pred ceEEEeccCCCCCcCccceEEEEEEEcCCc-c--CCCccCCCC--------CEEEEEE----eCeEEEEEEecCC-eEEE
Q 027375 80 RAVTFGDVFGFPAVNTQGVSLFRLDLDVGG-I--NPPHTHPRG--------TEAGIVT----RGTLLVGIVTTNN-TFFS 143 (224)
Q Consensus 80 ~~v~~~~~~~fP~l~~~gis~~~v~l~pgg-~--~ppH~Hp~a--------~Ei~yVl----~G~~~v~~~~~~~-~~~~ 143 (224)
..|......+.+. .-.+-+..+. .|+| . -|||.|++. +|+.|-. +|-+.-.+.+.+. ....
T Consensus 135 R~V~~~i~~~~~~--~~~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~ 211 (261)
T PF04962_consen 135 RTVRNIIDPNVPP--ASRLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEH 211 (261)
T ss_dssp EEEEEEESTTT-----SS-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEE
T ss_pred EEEEEeeCCCCcc--cceEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEE
Confidence 5566655555542 2236666665 6655 3 699999762 4655542 2433322232211 1113
Q ss_pred EEECCCCEEEEcCCCeeEEEecCCCCEEEEEEEeCCC
Q 027375 144 KVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFNTQN 180 (224)
Q Consensus 144 ~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~ 180 (224)
..++-||++.+|+| .|-+.....-...++.+.-..+
T Consensus 212 ~~V~~~d~V~iP~g-yHp~~aapGy~~Yylw~maG~~ 247 (261)
T PF04962_consen 212 YVVRNGDAVLIPSG-YHPVVAAPGYDMYYLWVMAGEN 247 (261)
T ss_dssp EEEETTEEEEESTT-B-SEEEEEESSEEEEEEEESSS
T ss_pred EEEECCCEEEeCCC-CCCcCcCCCcCcEEEEEEEcCC
Confidence 58999999999999 3444333233445777776665
No 103
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=84.54 E-value=4.1 Score=33.16 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=35.5
Q ss_pred EEEcCCccCCCccCC-CCCEEEEEEeCeEEEEEEecCCeE-EEEEECCCCEEEEc
Q 027375 103 LDLDVGGINPPHTHP-RGTEAGIVTRGTLLVGIVTTNNTF-FSKVLTPGMVFLIP 155 (224)
Q Consensus 103 v~l~pgg~~ppH~Hp-~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~L~~GDv~viP 155 (224)
..+++|..+-.---+ .+..+++|++|.+++...+++|+. ....+.+||++-.+
T Consensus 9 ~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 9 VTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEE 63 (202)
T ss_pred eEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechH
Confidence 455666543222121 247899999999999998887764 34566999987543
No 104
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=83.78 E-value=1.4 Score=40.60 Aligned_cols=61 Identities=25% Similarity=0.294 Sum_probs=42.4
Q ss_pred EEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCC--eE---------------EEEEECCCCEEEEcCCCeeEEEec
Q 027375 104 DLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNN--TF---------------FSKVLTPGMVFLIPRALVHFQLNV 165 (224)
Q Consensus 104 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~--~~---------------~~~~L~~GDv~viP~G~~H~~~N~ 165 (224)
-..+||.+.+||-+. +-+++=..|+=+..+....+ +. ...++.|||+.|||+|..|+-...
T Consensus 125 ~a~~GGgvg~H~D~Y-DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 125 FAAPGGGVGPHFDQY-DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred EecCCCccCccccch-heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence 457899999999976 55544455555555432111 11 135899999999999999998875
No 105
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=81.82 E-value=13 Score=32.98 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=38.4
Q ss_pred CCCEEE-EEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEec--CCCCEEEEEE
Q 027375 118 RGTEAG-IVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNV--GNEPATFIPI 175 (224)
Q Consensus 118 ~a~Ei~-yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~--g~~~a~~i~~ 175 (224)
...|+. +.+.|++++.+ +|+.| .+.+.|.+++|+|..-..... ...++.+...
T Consensus 72 ~rrE~giV~lgG~~~V~v---dG~~~--~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~ 127 (276)
T PRK00924 72 ERRELGIINIGGAGTVTV---DGETY--ELGHRDALYVGKGAKEVVFASADAANPAKFYLN 127 (276)
T ss_pred CCcEEEEEEccceEEEEE---CCEEE--ecCCCcEEEECCCCcEEEEEecCCCCCcEEEEE
Confidence 346765 56789999987 57766 799999999999987666542 3456666644
No 106
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.99 E-value=7.1 Score=28.63 Aligned_cols=43 Identities=26% Similarity=0.193 Sum_probs=33.7
Q ss_pred CCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEE
Q 027375 118 RGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQL 163 (224)
Q Consensus 118 ~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~ 163 (224)
.+.|++.|+.|.+++.+.+++ -.++..+|+.|.+|.+.-...+
T Consensus 40 a~~E~Mtvv~Gal~v~lpgs~---dWq~~~~Ge~F~VpgnS~F~lq 82 (94)
T COG3123 40 AAPEEMTVVSGALTVLLPGSD---DWQVYTAGEVFNVPGNSEFDLQ 82 (94)
T ss_pred CCceEEEEEeeEEEEEcCCCc---ccEEecCCceEEcCCCCeEEEE
Confidence 468999999999999885432 2478999999999998754443
No 107
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=79.25 E-value=12 Score=26.38 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=36.3
Q ss_pred EEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCC-eEEEEEECCCCEEEEc
Q 027375 102 RLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNN-TFFSKVLTPGMVFLIP 155 (224)
Q Consensus 102 ~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~~~~L~~GDv~viP 155 (224)
...+.+|..+ .+-......+.+|++|.+.+...+.+| +.....+.+||.+-..
T Consensus 19 ~~~~~~g~~l-~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 19 PVRYPAGEVI-IRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred EEEeCCCCEE-EeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 4567777754 333334578999999999998775554 3345678899977543
No 108
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=79.17 E-value=23 Score=31.17 Aligned_cols=82 Identities=17% Similarity=0.052 Sum_probs=49.7
Q ss_pred EEEeccCCCCCcCccceEEEEEEEcCCccCCCccCCCCCEEE-EEEeCeEEEEEEecCCeEEEEEECCC--------CEE
Q 027375 82 VTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAG-IVTRGTLLVGIVTTNNTFFSKVLTPG--------MVF 152 (224)
Q Consensus 82 v~~~~~~~fP~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~-yVl~G~~~v~~~~~~~~~~~~~L~~G--------Dv~ 152 (224)
++.++...- +.. -+.+..++|++|.....-.. + .|+. +.++|++++.+ +|+. ...+..- |++
T Consensus 14 ~~~i~~~~~-g~~--~~~~~~l~L~~g~~~~~~~~-~-~E~~vv~l~G~~~v~~---~g~~-~~~l~~R~~vF~~~~d~l 84 (261)
T PF04962_consen 14 VYSITPENA-GWM--YMGFGVLRLEAGESLEFELE-R-RELGVVNLGGKATVTV---DGEE-FYELGGRESVFDGPPDAL 84 (261)
T ss_dssp EEECTCCCC-CCC--CBECCCEEEECCHCCCCCCC-S-EEEEEEEESSSEEEEE---TTEE-EEEE-TTSSGGGS--EEE
T ss_pred EEEECCCcc-Ccc--ccceEEEEecCCCEEeccCC-C-cEEEEEEeCCEEEEEe---CCce-EEEecccccccCCCCcEE
Confidence 455554443 222 35556788889887655544 3 4555 57799999988 4522 2466666 999
Q ss_pred EEcCCCeeEEEecCCCCEEEEE
Q 027375 153 LIPRALVHFQLNVGNEPATFIP 174 (224)
Q Consensus 153 viP~G~~H~~~N~g~~~a~~i~ 174 (224)
++|+|.--.+.+.++ +.+..
T Consensus 85 Yvp~g~~~~i~a~~~--ae~~~ 104 (261)
T PF04962_consen 85 YVPRGTKVVIFASTD--AEFAV 104 (261)
T ss_dssp EE-TT--EEEEESST--EEEEE
T ss_pred EeCCCCeEEEEEcCC--CEEEE
Confidence 999999877777433 55543
No 109
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=78.51 E-value=16 Score=29.91 Aligned_cols=78 Identities=23% Similarity=0.180 Sum_probs=52.2
Q ss_pred ceEEEEEEEc--CCccCCCccCCCCCEEEEEEeCeEEEEEEecCC-----eEEEEEECCCCEEEEcCCCeeEEEecCCCC
Q 027375 97 GVSLFRLDLD--VGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNN-----TFFSKVLTPGMVFLIPRALVHFQLNVGNEP 169 (224)
Q Consensus 97 gis~~~v~l~--pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~-----~~~~~~L~~GDv~viP~G~~H~~~N~g~~~ 169 (224)
++++.|..-. |-.+..+-.||..+|.++-+.|+-.+-++.+++ +......++|+.+.+-+|+.|...-.=+.+
T Consensus 55 ~isifr~~~~~~p~~~~~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~ 134 (162)
T PRK03606 55 LISIFRAQPRALPLEIRMLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEV 134 (162)
T ss_pred EEEEEeCcccCCCcceeeEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCC
Confidence 4555544321 222344567888899999999998888876542 344569999999999999999654333344
Q ss_pred EEEEE
Q 027375 170 ATFIP 174 (224)
Q Consensus 170 a~~i~ 174 (224)
..++.
T Consensus 135 ~dF~v 139 (162)
T PRK03606 135 SDFLV 139 (162)
T ss_pred ceEEE
Confidence 44533
No 110
>PLN02868 acyl-CoA thioesterase family protein
Probab=76.80 E-value=9.4 Score=35.43 Aligned_cols=53 Identities=11% Similarity=-0.056 Sum_probs=38.1
Q ss_pred EEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEE
Q 027375 101 FRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLI 154 (224)
Q Consensus 101 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~vi 154 (224)
....+++|..+-.--. ....+++|++|++++...+.+++.....+++||++-.
T Consensus 32 ~~~~~~~Ge~I~~~Gd-~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVREGE-PGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeCCC-cCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 3456677765433223 3578999999999998877666555578899998874
No 111
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=76.59 E-value=12 Score=26.27 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=35.3
Q ss_pred EEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCe-EEEEEECCCCEEEE
Q 027375 101 FRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNT-FFSKVLTPGMVFLI 154 (224)
Q Consensus 101 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~L~~GDv~vi 154 (224)
....+++|..+-.. ......+.+|++|.+.+...+++|+ .....+.+|+++-.
T Consensus 18 ~~~~~~~g~~l~~~-~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 18 EERRFPAGEVIIRQ-GDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeeeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcCh
Confidence 34567777754222 1224789999999999988776653 34467788987743
No 112
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=74.86 E-value=14 Score=30.01 Aligned_cols=80 Identities=24% Similarity=0.274 Sum_probs=43.9
Q ss_pred ceEEEEEEEcCCc--cCCCccCCCCCEEEEEEeCeE-EEEEEecCC------eEEEEEECCCCEEEEcCCCeeEEEecCC
Q 027375 97 GVSLFRLDLDVGG--INPPHTHPRGTEAGIVTRGTL-LVGIVTTNN------TFFSKVLTPGMVFLIPRALVHFQLNVGN 167 (224)
Q Consensus 97 gis~~~v~l~pgg--~~ppH~Hp~a~Ei~yVl~G~~-~v~~~~~~~------~~~~~~L~~GDv~viP~G~~H~~~N~g~ 167 (224)
++++.|..-.+.- +.-+-.|+..+|.++-+.|+. .+-++-+++ +.....+.+|+.+.+.+|+.|...-.=+
T Consensus 56 ~~si~~~~~~~~p~~v~~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~ 135 (165)
T PF04115_consen 56 GISIFRAQPRELPFEVSMLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLD 135 (165)
T ss_dssp EEEEEEEEBE-SSEEEEEEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESS
T ss_pred EEEEEEeeccCCccccceeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccC
Confidence 3555555332222 234456777899999999988 554554332 3445699999999999999997654444
Q ss_pred CCEEEEEEE
Q 027375 168 EPATFIPIF 176 (224)
Q Consensus 168 ~~a~~i~~~ 176 (224)
+++.++.+-
T Consensus 136 ~~~~f~vv~ 144 (165)
T PF04115_consen 136 EPADFLVVD 144 (165)
T ss_dssp SEEEEEEEE
T ss_pred CcceEEEEe
Confidence 666666553
No 113
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=74.00 E-value=37 Score=30.74 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=53.3
Q ss_pred CCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEEeC--CCCcceecc
Q 027375 111 NPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFNT--QNPGVSDSI 187 (224)
Q Consensus 111 ~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s--~~pg~~~~~ 187 (224)
...-+..+.+-+++-.+|.+.+.. +-||. .+.++++.+||+|.-..+.-.|...-.++.++.. +-|..-.|+
T Consensus 147 ~safyNsDGDFLiVPQ~G~L~I~T--EfGrl---lV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg~HF~LPDLGPIG 220 (446)
T KOG1417|consen 147 NSAFYNSDGDFLIVPQQGRLWITT--EFGRL---LVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYGAHFQLPDLGPIG 220 (446)
T ss_pred cceeecCCCCEEEecccCcEEEEe--eccce---eecccceEEeecccEEEEecCCCCcceEEEEecceeecCCCCccc
Confidence 455566676777777788877654 34664 7899999999999998887778888888888865 455555544
No 114
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=73.20 E-value=12 Score=31.26 Aligned_cols=52 Identities=8% Similarity=-0.071 Sum_probs=36.0
Q ss_pred EEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeE-EEEEECCCCEEEEc
Q 027375 103 LDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTF-FSKVLTPGMVFLIP 155 (224)
Q Consensus 103 v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~L~~GDv~viP 155 (224)
..+++|..+-. -......+.+|++|.+.+...+.+|+. ....+.+||++-..
T Consensus 34 ~~~~kge~l~~-~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 34 FHFLAREYIVQ-EGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEI 86 (226)
T ss_pred eeeCCCCEEEc-CCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEee
Confidence 35666665422 222347899999999999998877754 34567999988643
No 115
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=69.26 E-value=19 Score=32.09 Aligned_cols=46 Identities=7% Similarity=0.078 Sum_probs=37.2
Q ss_pred CEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCC
Q 027375 120 TEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEP 169 (224)
Q Consensus 120 ~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~ 169 (224)
.-++++.+|.+++.. ++++. ..+.++..+++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~--~~g~~--l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITT--SSGEY--ITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEe--CCCce--EEeCCCeEEEEeCCcEEEEEecccCC
Confidence 578899999999875 23443 38999999999999999999876544
No 116
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=67.38 E-value=14 Score=33.64 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=31.4
Q ss_pred EEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEEeCCCCcce
Q 027375 142 FSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVS 184 (224)
Q Consensus 142 ~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~pg~~ 184 (224)
+.-..++|+.+++|.|..|-+.|....-|+.--..+.+|-+++
T Consensus 263 IEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~V 305 (407)
T KOG2130|consen 263 IECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFV 305 (407)
T ss_pred ceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCcee
Confidence 3457899999999999999999986655554444445565544
No 117
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=65.88 E-value=23 Score=30.43 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=55.8
Q ss_pred ccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEEeCCCCcce--ec
Q 027375 109 GINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVS--DS 186 (224)
Q Consensus 109 g~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s~~pg~~--~~ 186 (224)
|....|| ++-..+|++|+..... +|+....+++|||....|+|......-. +.+-++.=-..--|... .+
T Consensus 112 GhsGrh~---ad~y~tIL~G~~~~~~---~g~~~~evy~pGd~~~l~rg~a~~y~m~--~~tw~LEY~RG~IP~~lpf~~ 183 (216)
T PF04622_consen 112 GHSGRHW---ADDYFTILSGEQWAWS---PGSLEPEVYKPGDSHHLPRGEAKQYQMP--PGTWALEYGRGWIPSMLPFGF 183 (216)
T ss_pred CCCcceE---eeeEEEEEEEEEEEEc---CCCCCceEeccCCEEEecCceEEEEEeC--CCeEEEEecCCchhhhhHHHH
Confidence 4455565 4678899999998765 3443356889999999999988766553 33333332111123221 22
Q ss_pred ccchhcCCCCCCHHHHHhhcCCCHH
Q 027375 187 ISTIFDATPPVPNEVLTKSFRVGDD 211 (224)
Q Consensus 187 ~~~~f~s~p~~p~~vLa~af~~~~~ 211 (224)
++.+|.+ ++-..+-++..+...
T Consensus 184 ~dt~~sT---lDf~t~~~T~~~~~~ 205 (216)
T PF04622_consen 184 ADTLFST---LDFPTLYRTVYITAR 205 (216)
T ss_pred HHHHHhc---cchHHHHHHHHHHHH
Confidence 3456653 665566666655543
No 118
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=64.97 E-value=37 Score=28.33 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=35.4
Q ss_pred EEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEE
Q 027375 102 RLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLI 154 (224)
Q Consensus 102 ~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~vi 154 (224)
...+++|..+- +-......+++|++|.+.+.....+++.....+.+||++-.
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~ 83 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFIL 83 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhh
Confidence 45566666543 33444678999999999998765444544567899997643
No 119
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=64.80 E-value=16 Score=29.30 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=28.2
Q ss_pred CCEEEEEEeCeEEEEEEecCCeEE-EEEECCCCEEEE
Q 027375 119 GTEAGIVTRGTLLVGIVTTNNTFF-SKVLTPGMVFLI 154 (224)
Q Consensus 119 a~Ei~yVl~G~~~v~~~~~~~~~~-~~~L~~GDv~vi 154 (224)
...+.+|++|.+.+...+++|+.. ...+.+||++-.
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~ 47 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGV 47 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeee
Confidence 467889999999999888777543 467899998743
No 120
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=64.77 E-value=3.9 Score=36.45 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=17.0
Q ss_pred EEECCCCEEEEcCCCeeE
Q 027375 144 KVLTPGMVFLIPRALVHF 161 (224)
Q Consensus 144 ~~L~~GDv~viP~G~~H~ 161 (224)
..+++||++++|+|.+|.
T Consensus 153 v~v~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 153 IKLKPGDFFYVPSGTPHA 170 (302)
T ss_pred cccCCCCEEEeCCCCccc
Confidence 589999999999999998
No 121
>PHA02984 hypothetical protein; Provisional
Probab=64.47 E-value=46 Score=29.56 Aligned_cols=51 Identities=8% Similarity=0.087 Sum_probs=38.5
Q ss_pred CEEEE--EEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCEEE
Q 027375 120 TEAGI--VTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPATF 172 (224)
Q Consensus 120 ~Ei~y--Vl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~ 172 (224)
.|.+| +++|+.++..... ++..+..+++||.|.+.-+.-|..... +..+.+
T Consensus 92 nEy~FvlCl~G~~~I~~~~~-~~~is~~I~kGeaf~md~~t~h~i~T~-~knl~L 144 (286)
T PHA02984 92 NEYMFVLCLNGKTSIECFNK-GSKITNTIKKGEAFTLNLKTKYVTTTK-DKNLHL 144 (286)
T ss_pred ccEEEEEEcCCeEEEEEecC-CceeeeEEecCceEEEEccceEEEEeC-CCceEE
Confidence 56555 5689999988653 555678999999999999999998754 444433
No 122
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=60.30 E-value=7.3 Score=36.25 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.2
Q ss_pred EEEECCCCEEEEcCCCeeEEEe
Q 027375 143 SKVLTPGMVFLIPRALVHFQLN 164 (224)
Q Consensus 143 ~~~L~~GDv~viP~G~~H~~~N 164 (224)
...|++||.+++|+|.+|....
T Consensus 238 ~v~l~pGeaifipAg~~HAyl~ 259 (389)
T PRK15131 238 VVKLNPGEAMFLFAETPHAYLQ 259 (389)
T ss_pred EEEeCCCCEEEeCCCCCeEEcC
Confidence 3589999999999999998754
No 123
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=60.21 E-value=8.1 Score=34.97 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.7
Q ss_pred EEECCCCEEEEcCCCeeEEEe
Q 027375 144 KVLTPGMVFLIPRALVHFQLN 164 (224)
Q Consensus 144 ~~L~~GDv~viP~G~~H~~~N 164 (224)
..++|||.+++|+|.+|....
T Consensus 160 v~lkpGe~~fl~Agt~HA~~~ 180 (312)
T COG1482 160 VKLKPGEAFFLPAGTPHAYLK 180 (312)
T ss_pred EecCCCCEEEecCCCceeecc
Confidence 589999999999999998753
No 124
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=60.00 E-value=60 Score=26.81 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=46.8
Q ss_pred CCCccCCCCCEEEEEEeC-eEEEEEEecCC-----eEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEE
Q 027375 111 NPPHTHPRGTEAGIVTRG-TLLVGIVTTNN-----TFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIF 176 (224)
Q Consensus 111 ~ppH~Hp~a~Ei~yVl~G-~~~v~~~~~~~-----~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~ 176 (224)
..+-.||..++-+.-+.| ...+.++.+++ .........|+.+..-+|+.|...-.=+.+..++++-
T Consensus 71 ~~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vvd 142 (171)
T PRK13395 71 TMMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVVD 142 (171)
T ss_pred eeEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEEe
Confidence 345568888999998999 76666665432 3445699999999999999997654444445555543
No 125
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=59.82 E-value=34 Score=27.21 Aligned_cols=56 Identities=18% Similarity=0.068 Sum_probs=37.4
Q ss_pred EEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeE-EEEEECCCCEEEEcC
Q 027375 100 LFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTF-FSKVLTPGMVFLIPR 156 (224)
Q Consensus 100 ~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~L~~GDv~viP~ 156 (224)
.....+++|...-..--+ +.-+.+|++|.+.+...+++|+. ....+.+||.+-...
T Consensus 23 ~~~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 23 LEVRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELA 79 (214)
T ss_pred ceeEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHH
Confidence 334455566443333333 35588899999999999887753 335689999986654
No 126
>PHA00672 hypothetical protein
Probab=58.30 E-value=85 Score=24.88 Aligned_cols=67 Identities=12% Similarity=-0.026 Sum_probs=52.0
Q ss_pred ceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecCCCCE
Q 027375 97 GVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVGNEPA 170 (224)
Q Consensus 97 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a 170 (224)
|+....+.++.|....=-.|. .|-+++.+|.+++.. +|+. ++|+.--++.-|+|-....+.-.+...
T Consensus 46 GvYARei~IPkGt~LtG~~hk--f~~~ii~sG~itV~t---dge~--~rl~g~~~i~~~aG~KragyAHeDT~w 112 (152)
T PHA00672 46 GVYARTIRIPAGVALTGALIK--VSTVLIFSGHATVFI---GGEA--VELRGYHVIPASAGRKQAFVAHADTDL 112 (152)
T ss_pred ceeEEEEeccCceeeeeeeeE--eeEEEEecccEEEEe---CCcE--EEEecceeeecCCCcccceeeeccceE
Confidence 899999999999988777884 455699999999986 3553 488888888889998877776544443
No 127
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=57.44 E-value=23 Score=23.71 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=23.7
Q ss_pred EEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecC
Q 027375 131 LVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVG 166 (224)
Q Consensus 131 ~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 166 (224)
++++.|+.++.++.+|++|..|-.-+|.++.-.-+|
T Consensus 11 rVQlTD~Kgr~~Ti~L~~G~~fhThrG~i~HDdlIG 46 (54)
T PF14801_consen 11 RVQLTDPKGRKHTITLEPGGEFHTHRGAIRHDDLIG 46 (54)
T ss_dssp EEEEEETT--EEEEE--TT-EEEETTEEEEHHHHTT
T ss_pred EEEEccCCCCeeeEEECCCCeEEcCccccchhheec
Confidence 467888889999999999999999988776433333
No 128
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=56.42 E-value=1e+02 Score=24.51 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=39.4
Q ss_pred CEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEE---EecCCCCEEEEEEE
Q 027375 120 TEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQ---LNVGNEPATFIPIF 176 (224)
Q Consensus 120 ~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~---~N~g~~~a~~i~~~ 176 (224)
.=+.+|++|+=++.+ +++.| .+.+|+.++.+.+++-.. ....++|...+..-
T Consensus 24 p~i~~vlQG~K~~~~---g~~~~--~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l~ 78 (155)
T PF06719_consen 24 PSICIVLQGSKRVHL---GDQVF--EYDAGQYLVSSVDLPVESEVVEASPEEPYLALSLE 78 (155)
T ss_pred CeEEEEEeeeEEEEE---CCceE--EecCCcEEEecCCCcEEEEEeeccCCCCEEEEEEE
Confidence 578999999999988 35655 899999999999987644 33445676666544
No 129
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=55.76 E-value=31 Score=28.72 Aligned_cols=50 Identities=10% Similarity=-0.020 Sum_probs=33.5
Q ss_pred EEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeE-EEEEECCCCEEEE
Q 027375 104 DLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTF-FSKVLTPGMVFLI 154 (224)
Q Consensus 104 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~L~~GDv~vi 154 (224)
.+++|..+-.- -.....+.+|++|.+.+...+++|+. ....+.+||++-.
T Consensus 41 ~~~kge~l~~~-Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 41 PIQKGQTLFKA-GDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred eecCCCEeECC-CCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 45555543222 22357889999999999988877754 3345589999854
No 130
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=54.72 E-value=28 Score=24.96 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=36.2
Q ss_pred EEEcCCccCCCccCC---CCCEEEEE--Ee-Ce-----EEEEEEec---CCeEEEEE-----ECCCCEEEEcC-CCeeEE
Q 027375 103 LDLDVGGINPPHTHP---RGTEAGIV--TR-GT-----LLVGIVTT---NNTFFSKV-----LTPGMVFLIPR-ALVHFQ 162 (224)
Q Consensus 103 v~l~pgg~~ppH~Hp---~a~Ei~yV--l~-G~-----~~v~~~~~---~~~~~~~~-----L~~GDv~viP~-G~~H~~ 162 (224)
..+.+|+...||+.. ....+-++ +. -. +...+.+. ++...... .++|++++|+. ...|..
T Consensus 4 ~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v 83 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGV 83 (100)
T ss_dssp EEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEE
T ss_pred EEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecC
Confidence 356889999999875 32333333 33 11 23333321 11111113 88999999999 999998
Q ss_pred Eec
Q 027375 163 LNV 165 (224)
Q Consensus 163 ~N~ 165 (224)
.-.
T Consensus 84 ~~v 86 (100)
T PF13640_consen 84 TPV 86 (100)
T ss_dssp EEE
T ss_pred ccc
Confidence 777
No 131
>PHA02890 hypothetical protein; Provisional
Probab=54.41 E-value=85 Score=27.73 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=36.0
Q ss_pred CEEEE--EEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEe
Q 027375 120 TEAGI--VTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLN 164 (224)
Q Consensus 120 ~Ei~y--Vl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N 164 (224)
.|.+| +++|+.++.+.. +++..+..+++||.|.+.-+.-|....
T Consensus 91 nEy~FVlCL~Gs~~In~~~-~d~~iS~~I~kGeaF~mdv~t~H~i~T 136 (278)
T PHA02890 91 IECFFVACIEGSCKINVNI-GDREISDHIHENQGFIMDVGLDHAIDS 136 (278)
T ss_pred ccEEEEEEeCCeEEEEEec-CCceeeeeeecCceEEEEccceEEEEc
Confidence 56655 568999998764 356667899999999999999999876
No 132
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.53 E-value=5.8 Score=34.01 Aligned_cols=42 Identities=24% Similarity=0.196 Sum_probs=34.8
Q ss_pred ccceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEe
Q 027375 95 TQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVT 136 (224)
Q Consensus 95 ~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~ 136 (224)
+-++|+..+.+.|++++|+|-||.-+-+.=++=|++.+--.+
T Consensus 72 cD~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyD 113 (236)
T KOG4281|consen 72 CDRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYD 113 (236)
T ss_pred cCceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeecc
Confidence 347899999999999999999998777777888998876543
No 133
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=51.23 E-value=17 Score=29.00 Aligned_cols=25 Identities=8% Similarity=0.208 Sum_probs=22.8
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHHHh
Q 027375 195 PPVPNEVLTKSFRVGDDVINAIRAA 219 (224)
Q Consensus 195 p~~p~~vLa~af~~~~~~v~~l~~~ 219 (224)
|.++++-||++|+++++.+++|++.
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcC
Confidence 4799999999999999999999874
No 134
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=50.22 E-value=18 Score=33.58 Aligned_cols=60 Identities=20% Similarity=0.318 Sum_probs=44.0
Q ss_pred CCccCCCc---cCCCCCEEEEEEeCeEEEEEEecCC-------------------------eEEEEEECCCCEEEEcCCC
Q 027375 107 VGGINPPH---THPRGTEAGIVTRGTLLVGIVTTNN-------------------------TFFSKVLTPGMVFLIPRAL 158 (224)
Q Consensus 107 pgg~~ppH---~Hp~a~Ei~yVl~G~~~v~~~~~~~-------------------------~~~~~~L~~GDv~viP~G~ 158 (224)
.|...|.| +| +.-+...+-|.=+.-+..+.. ..+...=++|+.+++|.|.
T Consensus 207 ~gSwtp~HaDVf~--s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFvPsGW 284 (427)
T KOG2131|consen 207 AGSWTPFHADVFH--SPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFVPSGW 284 (427)
T ss_pred CCCCCccchhhhc--CCcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeeccCcc
Confidence 35568889 77 356778888888877776532 1111233799999999999
Q ss_pred eeEEEecCCC
Q 027375 159 VHFQLNVGNE 168 (224)
Q Consensus 159 ~H~~~N~g~~ 168 (224)
-|...|.+++
T Consensus 285 ~hQV~NL~dT 294 (427)
T KOG2131|consen 285 HHQVLNLGDT 294 (427)
T ss_pred ccccccccce
Confidence 9999999875
No 135
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=49.21 E-value=91 Score=28.66 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=61.7
Q ss_pred cCCceEEEeccCCCCCcCccceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeE-EEEEECCCCEE--E
Q 027375 77 VFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTF-FSKVLTPGMVF--L 153 (224)
Q Consensus 77 ~~g~~v~~~~~~~fP~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~L~~GDv~--v 153 (224)
..|..|..++.+. ++.-+.+.|++++..-+...+-.-+...+-.++|..-++.+++++|+. -...|++||-+ +
T Consensus 250 ~sG~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~GD~VL~~ 325 (344)
T PRK02290 250 RSGDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDGKPVSVVDLKPGDEVLGY 325 (344)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEE
Confidence 3466666666543 233577889998887776555554668999999999999999998863 24689999954 5
Q ss_pred EcCCCeeEEEec
Q 027375 154 IPRALVHFQLNV 165 (224)
Q Consensus 154 iP~G~~H~~~N~ 165 (224)
++.+--|+-...
T Consensus 326 ~~~~~RHfG~~i 337 (344)
T PRK02290 326 LEEAARHFGMAI 337 (344)
T ss_pred ecCCccccccee
Confidence 577777876554
No 136
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=48.86 E-value=69 Score=28.08 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=54.3
Q ss_pred cCccceEEEEEEEcCCcc---CCCccCCCCCEEEEEE---eCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecC
Q 027375 93 VNTQGVSLFRLDLDVGGI---NPPHTHPRGTEAGIVT---RGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVG 166 (224)
Q Consensus 93 l~~~gis~~~v~l~pgg~---~ppH~Hp~a~Ei~yVl---~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 166 (224)
+++-.+.+....|+||.+ .|.|.|.|..|..+-. +-.-.+.+....++..-.+++--+.++-|+=.+|.- .|
T Consensus 172 ~~scQL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP~ETRHiv~~NEqAViSP~WSIHSG--~G 249 (278)
T COG3717 172 LESCQLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQPQETRHIVMHNEQAVISPPWSIHSG--VG 249 (278)
T ss_pred hhhhhhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCCCceeEEEEeccceeeCCCceeecC--cc
Confidence 444457778888999996 5899999988865432 222223333222222234666666777787778764 35
Q ss_pred CCCEEEEEEEeCCC
Q 027375 167 NEPATFIPIFNTQN 180 (224)
Q Consensus 167 ~~~a~~i~~~~s~~ 180 (224)
...-.++++.-.+|
T Consensus 250 T~~YtFIWaMaGeN 263 (278)
T COG3717 250 TANYTFIWAMAGEN 263 (278)
T ss_pred ccceEEEEEecccc
Confidence 66777888776655
No 137
>PF13994 PgaD: PgaD-like protein
Probab=48.41 E-value=21 Score=28.06 Aligned_cols=24 Identities=33% Similarity=0.646 Sum_probs=21.9
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHHh
Q 027375 196 PVPNEVLTKSFRVGDDVINAIRAA 219 (224)
Q Consensus 196 ~~p~~vLa~af~~~~~~v~~l~~~ 219 (224)
.++++-+|+.|++++++++++++.
T Consensus 100 ~~~~~elA~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 100 PVSDEELARSFGLSPEQLQQLRQA 123 (138)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHhC
Confidence 389999999999999999999874
No 138
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=48.35 E-value=1.5e+02 Score=26.11 Aligned_cols=84 Identities=13% Similarity=0.018 Sum_probs=53.3
Q ss_pred eEEEeccCCCCCcCccceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecC----C-eEEEEEECCCCEEEEc
Q 027375 81 AVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTN----N-TFFSKVLTPGMVFLIP 155 (224)
Q Consensus 81 ~v~~~~~~~fP~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~----~-~~~~~~L~~GDv~viP 155 (224)
.+..++.++ ++..- +.+..++|++|.....-.-.+ .-++++++|++++...+.. | |.-.++=++=|.+++|
T Consensus 15 ~v~~vtp~s-agw~Y--VGF~~~~L~~Ges~~~~~~~~-E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp 90 (270)
T COG3718 15 LVQDVTPES-AGWEY--VGFRLLRLAAGESATEETGDR-ERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVP 90 (270)
T ss_pred ceEEecCCC-CCcee--EEEEEEEccCCCcccccCCCc-eEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEec
Confidence 355555433 34342 555666889999877766644 4455678999998764321 2 2212344677999999
Q ss_pred CCCeeEEEecCCC
Q 027375 156 RALVHFQLNVGNE 168 (224)
Q Consensus 156 ~G~~H~~~N~g~~ 168 (224)
.|..-.+...++-
T Consensus 91 ~g~~~~vtA~t~~ 103 (270)
T COG3718 91 AGSAFSVTATTDL 103 (270)
T ss_pred CCceEEEEeecce
Confidence 9998877775443
No 139
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=47.78 E-value=11 Score=27.99 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=10.1
Q ss_pred hhhHHHHHH---HHHHHHhhccccccC
Q 027375 7 MSLFGLLCG---LIVLLMLPFPSRASD 30 (224)
Q Consensus 7 ~~~~~~~~~---~~~~~~~~~~~~~~d 30 (224)
|.++.+|+. +++||++++.+.|.|
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~ 27 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAARE 27 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 455544333 223444444333433
No 140
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=46.56 E-value=24 Score=28.69 Aligned_cols=25 Identities=20% Similarity=0.546 Sum_probs=22.7
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHHHh
Q 027375 195 PPVPNEVLTKSFRVGDDVINAIRAA 219 (224)
Q Consensus 195 p~~p~~vLa~af~~~~~~v~~l~~~ 219 (224)
|.++++-+|+.|+++++.++++++.
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHhC
Confidence 4799999999999999999999874
No 141
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=46.33 E-value=41 Score=26.56 Aligned_cols=66 Identities=12% Similarity=0.283 Sum_probs=45.2
Q ss_pred CCCcCccceEEEEEEEcCCccCCCccCCCCCEEEEEE----eCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEe
Q 027375 90 FPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVT----RGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLN 164 (224)
Q Consensus 90 fP~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl----~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N 164 (224)
-|+++ ++.+.++.|++|...--- +..|+...+ .|.+.+.+-++.+. .++|||++-+-.|..-.+++
T Consensus 11 ~P~~k--N~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~~~----~~~PGDIirLt~Gy~Si~qg 80 (134)
T KOG3416|consen 11 KPGLK--NINVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEEGC----LIQPGDIIRLTGGYASIFQG 80 (134)
T ss_pred Chhhh--cceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCcCc----ccCCccEEEecccchhhhcC
Confidence 36777 577777788887754321 234555544 57777777765555 67999999999998776665
No 142
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=44.93 E-value=1.2e+02 Score=27.97 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=61.1
Q ss_pred cCCceEEEeccCCCCCcCccceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEE-EEEECCCCEE--E
Q 027375 77 VFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFF-SKVLTPGMVF--L 153 (224)
Q Consensus 77 ~~g~~v~~~~~~~fP~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~-~~~L~~GDv~--v 153 (224)
..|..|..++.+. ++.-+.+.|++++..-+...+-.-+..++-.++|..-++.++.++|+.. ...|++||-+ +
T Consensus 260 ~sG~~VlvVd~~G----~tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G~~vsVt~Lk~GD~vL~~ 335 (354)
T PF01959_consen 260 RSGDEVLVVDADG----RTRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDGEPVSVTELKPGDEVLVY 335 (354)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEE
Confidence 3456666665433 2335778888888877655544446689999999999999999988643 3689999955 5
Q ss_pred EcCCCeeEEEec
Q 027375 154 IPRALVHFQLNV 165 (224)
Q Consensus 154 iP~G~~H~~~N~ 165 (224)
+..+--|+-...
T Consensus 336 ~~~~~RHfG~~I 347 (354)
T PF01959_consen 336 LEEAGRHFGMKI 347 (354)
T ss_pred ecCCCcccceEe
Confidence 677778876655
No 143
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=42.48 E-value=1.2e+02 Score=23.68 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=20.8
Q ss_pred cCCCccCCCCCEEEEEEeCeEEEEEE
Q 027375 110 INPPHTHPRGTEAGIVTRGTLLVGIV 135 (224)
Q Consensus 110 ~~ppH~Hp~a~Ei~yVl~G~~~v~~~ 135 (224)
-..+-.|.+-..+.|+++|+=++++.
T Consensus 60 ~~~~E~Hr~YiDIq~~l~G~E~i~~~ 85 (142)
T TIGR00022 60 SKKAELHHRYLDIQLLLRGEENIEVG 85 (142)
T ss_pred hcchhhhhheEEEEEeecceEEEEEe
Confidence 34556677778999999999999985
No 144
>COG1741 Pirin-related protein [General function prediction only]
Probab=40.00 E-value=2.7e+02 Score=24.73 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=30.6
Q ss_pred CCCCcCccceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEE
Q 027375 89 GFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVG 133 (224)
Q Consensus 89 ~fP~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~ 133 (224)
..|.-... +.+..+.+++|+..+.+ -+.-.-++||++|++.+.
T Consensus 165 ~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~ 207 (276)
T COG1741 165 SSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVN 207 (276)
T ss_pred ccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEc
Confidence 34554444 77888899999987776 223356889999988873
No 145
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=39.81 E-value=1.6e+02 Score=23.43 Aligned_cols=52 Identities=10% Similarity=0.013 Sum_probs=36.9
Q ss_pred CCccCCCCCEEEEEEeCeEEEEEEecCC----eE--------------EEEEECCCCEEEEcCCCeeEEE
Q 027375 112 PPHTHPRGTEAGIVTRGTLLVGIVTTNN----TF--------------FSKVLTPGMVFLIPRALVHFQL 163 (224)
Q Consensus 112 ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~----~~--------------~~~~L~~GDv~viP~G~~H~~~ 163 (224)
.+-.|.+=..+.|+++|+-.+++..... +. ....|++|+..++-++-.|.-.
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 4456767788999999998888754211 00 0357888888888888888754
No 146
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=39.65 E-value=66 Score=32.67 Aligned_cols=52 Identities=12% Similarity=-0.031 Sum_probs=33.6
Q ss_pred EEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEE
Q 027375 100 LFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVF 152 (224)
Q Consensus 100 ~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~ 152 (224)
+....+.||..+-.--. .+.++.+|++|++.+...+.+.+.....+++||.|
T Consensus 397 ~~~~~~~pge~I~~qge-~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 397 MKAEYIPPREDVIMQNE-APDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIF 448 (823)
T ss_pred hheeeeCCCCEEEECCC-CCceEEEEEecEEEEEEecCCcceeeEEccCCCEe
Confidence 34456777775433222 34789999999999864322233344689999987
No 147
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=38.44 E-value=1.1e+02 Score=24.84 Aligned_cols=58 Identities=14% Similarity=0.025 Sum_probs=40.6
Q ss_pred cCCCccCCCCCEEEEEEeCeEEEEEEecCC--------------------eEEEEEECCCCEEEEcCCCeeEEEecCC
Q 027375 110 INPPHTHPRGTEAGIVTRGTLLVGIVTTNN--------------------TFFSKVLTPGMVFLIPRALVHFQLNVGN 167 (224)
Q Consensus 110 ~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~--------------------~~~~~~L~~GDv~viP~G~~H~~~N~g~ 167 (224)
..-+-.|.+=.++-++++|+=.+++....+ ....-+|++|+..+|=+|-+|.-.-...
T Consensus 60 ~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~~~ 137 (154)
T COG2731 60 EKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCNVG 137 (154)
T ss_pred hcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccccC
Confidence 344556666689999999998888764321 0113588999999999999997544433
No 148
>PLN02288 mannose-6-phosphate isomerase
Probab=38.01 E-value=23 Score=33.05 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=18.7
Q ss_pred EEECCCCEEEEcCCCeeEEEe
Q 027375 144 KVLTPGMVFLIPRALVHFQLN 164 (224)
Q Consensus 144 ~~L~~GDv~viP~G~~H~~~N 164 (224)
..|+|||.+++|+|.+|....
T Consensus 253 v~L~PGeaifl~ag~~HAYl~ 273 (394)
T PLN02288 253 VKLNPGEALYLGANEPHAYLS 273 (394)
T ss_pred EecCCCCEEEecCCCCceecC
Confidence 499999999999999997653
No 149
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=36.53 E-value=60 Score=32.83 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=33.5
Q ss_pred EEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEE
Q 027375 104 DLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVF 152 (224)
Q Consensus 104 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~ 152 (224)
-+.||..+-..=.+- +|+.+|++|.+.+.-.+.++......|++||.+
T Consensus 446 ~f~pge~iireGd~v-~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 446 YFTPGEYIIREGDPV-TDMYFIVRGSLESITTDGGGFFVVAILGPGDFF 493 (727)
T ss_pred ccCCCCeEEecCCcc-ceeEEEEeeeEEEEEccCCceEEEEEecCCCcc
Confidence 345555555555554 899999999998765443344456799999987
No 150
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=34.63 E-value=42 Score=26.03 Aligned_cols=26 Identities=8% Similarity=0.328 Sum_probs=20.6
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHHhcC
Q 027375 196 PVPNEVLTKSFRVGDDVINAIRAARA 221 (224)
Q Consensus 196 ~~p~~vLa~af~~~~~~v~~l~~~~~ 221 (224)
|+++..+|+..++++++|.++++..+
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~~ 97 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEHG 97 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHHT
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHcC
Confidence 69999999999999999999988743
No 151
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=32.87 E-value=45 Score=22.45 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=19.8
Q ss_pred chhcCCCCCCHHHHHhhcCCCHHHHHHHHHhc
Q 027375 189 TIFDATPPVPNEVLTKSFRVGDDVINAIRAAR 220 (224)
Q Consensus 189 ~~f~s~p~~p~~vLa~af~~~~~~v~~l~~~~ 220 (224)
..|| -.+.-|.+.+|++++++++||+.+
T Consensus 40 ~~yG----s~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 40 ERYG----SVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHHS----SHHHHHHHT-T--HHHHHHHHHHH
T ss_pred HHcC----CHHHHHHHcCCCCHHHHHHHHHHc
Confidence 4566 356788899999999999999864
No 152
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=32.59 E-value=87 Score=30.27 Aligned_cols=33 Identities=36% Similarity=0.450 Sum_probs=25.4
Q ss_pred CCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEE
Q 027375 118 RGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVF 152 (224)
Q Consensus 118 ~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~ 152 (224)
-+.|+.+|.+|.+.+ ++++|...-.++++|++|
T Consensus 347 vgkEMyIVk~G~L~V--v~dDg~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 347 VGKEMYIVKEGKLAV--VADDGVTVFVTLKAGSVF 379 (536)
T ss_pred ccceEEEEEccEEEE--EecCCcEEEEEecCCcee
Confidence 468999999999876 445564444799999987
No 153
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=31.52 E-value=1.5e+02 Score=23.46 Aligned_cols=54 Identities=15% Similarity=0.046 Sum_probs=33.0
Q ss_pred cCCCccCCCCCEEEEEEeCeEEEEEE-ecCC--------------------eEEEEEECCCCEEEEcCCCeeEEE
Q 027375 110 INPPHTHPRGTEAGIVTRGTLLVGIV-TTNN--------------------TFFSKVLTPGMVFLIPRALVHFQL 163 (224)
Q Consensus 110 ~~ppH~Hp~a~Ei~yVl~G~~~v~~~-~~~~--------------------~~~~~~L~~GDv~viP~G~~H~~~ 163 (224)
-..+-.|.+-..+.|+++|+=++++. +..+ ......|++|+.++|=++-+|.-.
T Consensus 60 ~~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~ 134 (153)
T PF04074_consen 60 ERRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPG 134 (153)
T ss_dssp GS-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEE
T ss_pred ccceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCcccccc
Confidence 35667787788999999999999883 2210 001247899999999999999743
No 154
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=27.62 E-value=68 Score=19.90 Aligned_cols=26 Identities=8% Similarity=-0.038 Sum_probs=18.7
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHHhcC
Q 027375 196 PVPNEVLTKSFRVGDDVINAIRAARA 221 (224)
Q Consensus 196 ~~p~~vLa~af~~~~~~v~~l~~~~~ 221 (224)
+.+..-+|+.+|++..+|.+..+.+.
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~ 42 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYR 42 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT---
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcc
Confidence 68889999999999999999988763
No 155
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=26.80 E-value=43 Score=30.67 Aligned_cols=76 Identities=18% Similarity=0.322 Sum_probs=52.6
Q ss_pred CCCCcCccceEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCC--eEE------------------------
Q 027375 89 GFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNN--TFF------------------------ 142 (224)
Q Consensus 89 ~fP~l~~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~--~~~------------------------ 142 (224)
.+|..++.++.+...-.+.|.+.|.|.-+. .-++.=+.|+.++.+.-+.. ..|
T Consensus 241 ~~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~fp~ 319 (355)
T KOG2132|consen 241 SFPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAFPK 319 (355)
T ss_pred ecCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhhhH
Confidence 355555545666666666688999997666 66777778888877764321 111
Q ss_pred -------EEEECCCCEEEEcCCCeeEEEec
Q 027375 143 -------SKVLTPGMVFLIPRALVHFQLNV 165 (224)
Q Consensus 143 -------~~~L~~GDv~viP~G~~H~~~N~ 165 (224)
...|++||++++|+...|+.+..
T Consensus 320 ~~k~~~l~~lL~pGe~L~iP~kwwhyvrs~ 349 (355)
T KOG2132|consen 320 FAKARFLDCLLEPGEALFIPPKWWHYVRSL 349 (355)
T ss_pred HHHHHHHHHhcCCchhccccHHHhhhhhhc
Confidence 24789999999999999988653
No 156
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=25.32 E-value=78 Score=32.30 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=28.5
Q ss_pred EEEEEECCCCEEEEcCCCeeEEEecCCCCEEEEEEEeC
Q 027375 141 FFSKVLTPGMVFLIPRALVHFQLNVGNEPATFIPIFNT 178 (224)
Q Consensus 141 ~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i~~~~s 178 (224)
-+.-.|++|+.++||.|.+|..+-..+.-+...-++.+
T Consensus 195 C~~~~l~~g~T~~iPsGwIhAV~Tp~d~l~fgGnflhs 232 (776)
T KOG1633|consen 195 CYKCILKQGQTLFIPSGWIHAVLTPTDCLVFGGNFLHS 232 (776)
T ss_pred eEEEEeccCceEecccceeEeeecCcchheeccchhhh
Confidence 34568999999999999999998776555544444444
No 157
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=24.99 E-value=2.4e+02 Score=19.43 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=31.2
Q ss_pred EeCeEEEEEEecCC-eEEEEEECCCCEEEEcCCCeeEEEecCCCCEEEE
Q 027375 126 TRGTLLVGIVTTNN-TFFSKVLTPGMVFLIPRALVHFQLNVGNEPATFI 173 (224)
Q Consensus 126 l~G~~~v~~~~~~~-~~~~~~L~~GDv~viP~G~~H~~~N~g~~~a~~i 173 (224)
..|+.-+.+.+.+| ..+...+++||..-+..+ .-+....|+-.++-+
T Consensus 5 a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~-~~~~i~iGna~~v~v 52 (77)
T PF13464_consen 5 ATGDSWVEVTDADGKVLFSGTLKAGETKTFEGK-EPFRIRIGNAGAVEV 52 (77)
T ss_pred EeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCC-CCEEEEEeCCCcEEE
Confidence 34777777776666 567889999999988433 334445566655544
No 158
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=24.72 E-value=1.2e+02 Score=25.10 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=21.5
Q ss_pred CCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcC
Q 027375 118 RGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPR 156 (224)
Q Consensus 118 ~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~ 156 (224)
...-++|+++|++.+.. +++ ...|.+||.+++-.
T Consensus 134 ~~~~l~~~~~G~~~i~~---~~~--~~~L~~~d~l~~~~ 167 (184)
T PF05962_consen 134 ASTVLVYVLEGAWSITE---GGN--CISLSAGDLLLIDD 167 (184)
T ss_dssp -SEEEEEESSS-EEECC---CEE--EEEE-TT-EEEEES
T ss_pred CCEEEEEEeeCcEEEec---CCC--ceEcCCCCEEEEeC
Confidence 34677899999876542 224 35999999998866
No 159
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=24.53 E-value=82 Score=19.56 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=21.1
Q ss_pred chhcCCCCCCHHHHHhhcCCCHHHHHHHHH
Q 027375 189 TIFDATPPVPNEVLTKSFRVGDDVINAIRA 218 (224)
Q Consensus 189 ~~f~s~p~~p~~vLa~af~~~~~~v~~l~~ 218 (224)
.++.. +++..-+|+.||++..+|-+..+
T Consensus 16 ~l~~~--G~si~~IA~~~gvsr~TvyR~l~ 43 (45)
T PF02796_consen 16 ELYAE--GMSIAEIAKQFGVSRSTVYRYLN 43 (45)
T ss_dssp HHHHT--T--HHHHHHHTTS-HHHHHHHHC
T ss_pred HHHHC--CCCHHHHHHHHCcCHHHHHHHHh
Confidence 46666 79999999999999999988764
No 160
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=24.42 E-value=1.2e+02 Score=30.26 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=37.6
Q ss_pred eEEEEEEEcCCccCCCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEe
Q 027375 98 VSLFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLN 164 (224)
Q Consensus 98 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N 164 (224)
|.+....-.||-+ -.|+-+.-+-+.+|++|.+++-- ++++ ...|.+||+| |-..|..|
T Consensus 569 m~f~~~H~APGDL-lYHtGESvDaLcFvVsGSLEVIQ---DDEV-VAILGKGDVF----GD~FWK~~ 626 (971)
T KOG0501|consen 569 MEFQTNHCAPGDL-LYHTGESVDALCFVVSGSLEVIQ---DDEV-VAILGKGDVF----GDEFWKEN 626 (971)
T ss_pred HHHHhccCCCcce-eeecCCccceEEEEEecceEEee---cCcE-EEEeecCccc----hhHHhhhh
Confidence 4444445556543 34555556789999999999854 3444 4799999998 44445444
No 161
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=24.19 E-value=1.2e+02 Score=25.10 Aligned_cols=44 Identities=11% Similarity=0.020 Sum_probs=32.7
Q ss_pred CEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEe
Q 027375 120 TEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLN 164 (224)
Q Consensus 120 ~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N 164 (224)
.-+..-++|++.+.+.. .|..+..+|.+||-+++.++.+-.+..
T Consensus 130 g~~~~~l~G~G~v~l~~-~G~i~~i~L~~ge~~~Vd~~~lVA~~~ 173 (215)
T PF01987_consen 130 GLFMLKLSGRGTVFLSG-YGAIYEIDLAPGEEIIVDPGHLVAWSG 173 (215)
T ss_dssp -EEEEEEESSCEEEEEE-CCSEEEEEEE-EEEEEEEGGGEEEEET
T ss_pred CcEEEEEEEEEEEEEEe-CCcEEEEEccCCceEEEcCCCEEEECC
Confidence 34456688999988765 477888899999999999887766544
No 162
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=23.65 E-value=88 Score=18.52 Aligned_cols=24 Identities=4% Similarity=0.128 Sum_probs=18.1
Q ss_pred CCHHHHHhhcCCCHHHHHHHHHhc
Q 027375 197 VPNEVLTKSFRVGDDVINAIRAAR 220 (224)
Q Consensus 197 ~p~~vLa~af~~~~~~v~~l~~~~ 220 (224)
+..+-+|...|+..++|.++-+++
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l 26 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKL 26 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHH
Confidence 567789999999999998887765
No 163
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=23.37 E-value=88 Score=20.13 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=20.8
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHHh
Q 027375 196 PVPNEVLTKSFRVGDDVINAIRAA 219 (224)
Q Consensus 196 ~~p~~vLa~af~~~~~~v~~l~~~ 219 (224)
+.+.+.||.-||+++.++.++-..
T Consensus 19 ~~~~~~La~~FgIs~stvsri~~~ 42 (53)
T PF13613_consen 19 NLTFQDLAYRFGISQSTVSRIFHE 42 (53)
T ss_pred CCcHhHHhhheeecHHHHHHHHHH
Confidence 688899999999999999887654
No 164
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=23.37 E-value=1e+02 Score=18.91 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=15.1
Q ss_pred CCCHHHHHhhcC-CCHHHHHHH
Q 027375 196 PVPNEVLTKSFR-VGDDVINAI 216 (224)
Q Consensus 196 ~~p~~vLa~af~-~~~~~v~~l 216 (224)
.+|+|++.+.|. ++.+++-++
T Consensus 3 ~LP~Eil~~If~~L~~~dl~~~ 24 (47)
T PF12937_consen 3 SLPDEILLEIFSYLDPRDLLRL 24 (47)
T ss_dssp CS-HHHHHHHHTTS-HHHHHHH
T ss_pred HhHHHHHHHHHhcCCHHHHHHH
Confidence 599999999997 787776554
No 165
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=23.03 E-value=2.6e+02 Score=24.06 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.1
Q ss_pred EEEECCCCEEEEcCCCeeEEEecCC
Q 027375 143 SKVLTPGMVFLIPRALVHFQLNVGN 167 (224)
Q Consensus 143 ~~~L~~GDv~viP~G~~H~~~N~g~ 167 (224)
...+++|+++++|...+|...-+..
T Consensus 142 ~Vkp~aG~~vlfps~~lH~v~pVt~ 166 (226)
T PRK05467 142 RVKLPAGDLVLYPSTSLHRVTPVTR 166 (226)
T ss_pred EEecCCCeEEEECCCCceeeeeccC
Confidence 3578999999999999999887543
No 166
>PF04773 FecR: FecR protein; InterPro: IPR006860 FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognises iron dicitrate in the periplasm.
Probab=22.77 E-value=2.7e+02 Score=19.34 Aligned_cols=57 Identities=11% Similarity=0.033 Sum_probs=34.3
Q ss_pred EEEEcCCccC-CCccCCCCCEEEEEEeCeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeE
Q 027375 102 RLDLDVGGIN-PPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHF 161 (224)
Q Consensus 102 ~v~l~pgg~~-ppH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~ 161 (224)
++.+.|+..+ ..-........+.+.+|++.+.+-....+. ..++.+...+..+|. +|
T Consensus 20 ~v~l~~~s~~~~~~~~~~~~~~~~L~~G~~~~~~~~~~~~~--~~V~T~~~~i~v~GT-~f 77 (98)
T PF04773_consen 20 RVRLGPNSRVSVDRDSGSEPTRLRLLSGEILFDVSPGKKRP--FEVRTPTATIGVRGT-RF 77 (98)
T ss_pred EEEECCCcEEEEEcccCCCceEEEEcCCCEEEEEcccCCCC--EEEEeCCEEEEEecC-EE
Confidence 3556666654 112222224457889999988775322222 478888888888884 44
No 167
>TIGR03643 conserved hypothetical protein TIGR03643. This model describes an uncharacterized bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae El Tor N16961 has three identical copies.
Probab=22.32 E-value=1.1e+02 Score=21.73 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=21.7
Q ss_pred CCCHHHHHhhcCCCHHHHHHH-HHhcCCC
Q 027375 196 PVPNEVLTKSFRVGDDVINAI-RAARAQS 223 (224)
Q Consensus 196 ~~p~~vLa~af~~~~~~v~~l-~~~~~~~ 223 (224)
..|=|.+..-||+++.+|-+| ++.+.++
T Consensus 13 RtpFeaI~~~fGL~E~eVi~lMR~~lk~~ 41 (72)
T TIGR03643 13 RTPFEAIEQQFGLSEKEVIKLMRQNLKPS 41 (72)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHhhcChh
Confidence 577789999999999998777 4455544
No 168
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=22.05 E-value=34 Score=34.97 Aligned_cols=58 Identities=22% Similarity=0.198 Sum_probs=35.5
Q ss_pred EEcCCccCCCccCCCCCEEEEEEeCe---EE--EEEEecCCeEEEEEECCCCEEEEcCCCeeEEEecC
Q 027375 104 DLDVGGINPPHTHPRGTEAGIVTRGT---LL--VGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLNVG 166 (224)
Q Consensus 104 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~---~~--v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N~g 166 (224)
..+-|.-+++-.||-.++-.|.-++- +. +|+ +-++.+=..||.++||+|.+|.++|.-
T Consensus 761 ~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGV-----e~WtfvQ~LGdAVfIPAGaPHQVrNLk 823 (889)
T KOG1356|consen 761 CKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGV-----EPWTFVQFLGDAVFIPAGAPHQVRNLK 823 (889)
T ss_pred hHHhcCCCCcccCCCcccceeccHHHHHHHHHHhCC-----CccchhhcccceEEecCCCcHHhhhhh
Confidence 34444555666677666655554331 11 111 222335578999999999999999964
No 169
>PF10985 DUF2805: Protein of unknown function (DUF2805); InterPro: IPR019882 This entry represents an uncharacterised bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae O1 biovar eltor str. N16961 has three identical copies.
Probab=21.73 E-value=1.1e+02 Score=21.74 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=21.7
Q ss_pred CCCHHHHHhhcCCCHHHHHHH-HHhcCCC
Q 027375 196 PVPNEVLTKSFRVGDDVINAI-RAARAQS 223 (224)
Q Consensus 196 ~~p~~vLa~af~~~~~~v~~l-~~~~~~~ 223 (224)
..|=|.+..-||+++.+|-+| ++.+.++
T Consensus 12 RtpFeaI~~qfGl~E~eVi~lMR~~Lk~~ 40 (73)
T PF10985_consen 12 RTPFEAIERQFGLSEKEVIKLMRKELKPS 40 (73)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHhhcChh
Confidence 577789999999999998777 4455554
No 170
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=20.41 E-value=1.6e+02 Score=21.33 Aligned_cols=34 Identities=15% Similarity=-0.041 Sum_probs=20.7
Q ss_pred CeEEEEEEecCCeEEEEEECCCCEEEEcCCCeeEEEe
Q 027375 128 GTLLVGIVTTNNTFFSKVLTPGMVFLIPRALVHFQLN 164 (224)
Q Consensus 128 G~~~v~~~~~~~~~~~~~L~~GDv~viP~G~~H~~~N 164 (224)
|.+... .+|+.....+++||.+++|...--.+..
T Consensus 43 G~G~~~---~~g~~~~~~vk~GD~Vl~~~~~g~~v~~ 76 (93)
T PF00166_consen 43 GPGRYN---ENGEEVPMDVKVGDKVLFPKYAGTEVKF 76 (93)
T ss_dssp -SEEET---TTSSEEETSS-TTSEEEEETTTSEEEEE
T ss_pred CCcccc---CCCcEeeeeeeeccEEeccccCceEEEE
Confidence 555443 3454445578999999999887544444
No 171
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=20.15 E-value=65 Score=29.67 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=16.8
Q ss_pred EEECCCCEEEEcCCCeeEEEe
Q 027375 144 KVLTPGMVFLIPRALVHFQLN 164 (224)
Q Consensus 144 ~~L~~GDv~viP~G~~H~~~N 164 (224)
..|++|+.+++|+|.+|....
T Consensus 252 v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 252 VELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEE-TT-EEEEHTTHHEEEEE
T ss_pred EEecCCceEEecCCCcccccc
Confidence 399999999999999997764
Done!