BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027376
(224 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4I1G5|CRIM2_ARATH Cold-regulated 413 inner membrane protein 2, chloroplastic
OS=Arabidopsis thaliana GN=COR413IM2 PE=1 SV=1
Length = 226
Score = 240 bits (613), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 122/189 (64%), Positives = 149/189 (78%), Gaps = 5/189 (2%)
Query: 41 SWSSFAFNPLRLSVNHEEMKMVT----KRKSRGFSAVCYASP-LTARNLQWISTISSTVL 95
S S FNPLRLS + + V+ KR+ RG S VCYA+P L+ NLQWISTIS L
Sbjct: 38 STSVVCFNPLRLSADRQRTATVSARAEKRRKRGSSVVCYATPMLSVHNLQWISTISCVAL 97
Query: 96 MLAKGTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLVRLFFFIPGELELPFMA 155
M A+GT + KSF+VPLFALQAP ++SW+KGEYGIWAAFLALL RLFF P ELELPF+A
Sbjct: 98 MFARGTGIHKSFVVPLFALQAPMGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIA 157
Query: 156 LLLVIVAPHQVLTLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICI 215
LLLVIVAP+QV+++RG Q+GAI+SL I+ +LAFQHFSRAG L+KAF+Q SV+AT+AII +
Sbjct: 158 LLLVIVAPYQVMSIRGKQEGAILSLAISCFLAFQHFSRAGTLQKAFDQNSVLATVAIIGV 217
Query: 216 TALSCLFLI 224
T +S LFLI
Sbjct: 218 TVVSFLFLI 226
>sp|Q94AL8|CRIM1_ARATH Cold-regulated 413 inner membrane protein 1, chloroplastic
OS=Arabidopsis thaliana GN=COR413IM1 PE=1 SV=1
Length = 225
Score = 240 bits (612), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 121/216 (56%), Positives = 162/216 (75%), Gaps = 10/216 (4%)
Query: 11 STRSFSLYNN---INQPILTRQTKLFGSRSFSSSWSSFAFNPLRLSVNHEEMKMVT---- 63
S+R SL++ ++ + +R + L G S FNPLRLS + + V+
Sbjct: 8 SSRIVSLHHQKPFLSLKLRSRPSDLSG---LGRHTSPVCFNPLRLSGDRQRTATVSTRVE 64
Query: 64 KRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAPADVISW 123
KR+ RG S VCYA+P++A +LQWISTIS LMLA+GT + KS +VPLFAL AP+ +++W
Sbjct: 65 KRRKRGSSVVCYAAPISANSLQWISTISCLALMLARGTGIHKSVVVPLFALHAPSSIVAW 124
Query: 124 IKGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRGTQQGAIISLVIA 183
IKGEYG+WAAFLAL+ RLFF PGELELPF+ALLLVIVAP+QV+ +RG Q+GAII++ I+
Sbjct: 125 IKGEYGVWAAFLALIARLFFTFPGELELPFIALLLVIVAPYQVMNIRGKQEGAIIAIAIS 184
Query: 184 GYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALS 219
G+LAFQHFSRAG+L KA+E+GSV+AT+AII +T +S
Sbjct: 185 GFLAFQHFSRAGSLEKAYEKGSVLATVAIIGVTVVS 220
>sp|Q9SVL6|CRPM2_ARATH Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis
thaliana GN=COR413PM2 PE=2 SV=1
Length = 203
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 13/171 (7%)
Query: 55 NHEEMKMVTKRKSRGFSAVCYASPLT--ARNLQWISTISSTVLMLAK----GTAVPKSFL 108
+ EE+K+ K+ FS V L L+++++ ++ L++ T + S L
Sbjct: 23 DMEELKVAAKKL---FSDVSKLGGLGFGVSFLKFLASFAAIYLLILDRTNWKTKMLTSLL 79
Query: 109 VPLFALQAPADVISWIKGEYGIWAAFLALLVRLFF--FIPGELELPFMALLLVIVAPHQV 166
+P L P+ + +++ G+ G W AF+A+++RLFF P LE+P +LL++V+PH +
Sbjct: 80 IPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKHFPDWLEMPGSLILLLVVSPHFL 139
Query: 167 L-TLRGTQQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGSVVA-TLAIICI 215
+RGT G +ISL I YL +H +G R +F Q V+ TL II +
Sbjct: 140 AHHIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFTQPRGVSNTLGIILL 190
>sp|O23164|CRPM4_ARATH Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis
thaliana GN=At4g37220 PE=2 SV=2
Length = 202
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 79/140 (56%), Gaps = 8/140 (5%)
Query: 84 LQWISTISSTVLMLAK----GTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLV 139
LQW ++I + L++ T + + LVP P+ + + G++G W A +A++V
Sbjct: 50 LQWAASIFAIYLLILDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIV 109
Query: 140 RLFF--FIPGELELPFMALLLVIVAPHQV-LTLRGTQQGAIISLVIAGYLAFQHFSRAGN 196
RLFF P LE+P +L+V+V+P + TLR + GA+I LVIA YL +H +G
Sbjct: 110 RLFFPKEFPEWLEIPVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKASGG 169
Query: 197 LRKAFEQGSVVA-TLAIICI 215
+ +F Q + ++ T+ I+ +
Sbjct: 170 FKNSFTQKNGISNTIGIVAL 189
>sp|Q9XIM7|CRPM1_ARATH Cold-regulated 413 plasma membrane protein 1 OS=Arabidopsis
thaliana GN=COR413PM1 PE=1 SV=1
Length = 197
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 84 LQWISTISSTVLMLAK----GTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLV 139
L+W+++I++ L++ T + S L+P P+ + +GE G W AF+A++V
Sbjct: 48 LEWVASIAAIYLLVLDRTNWKTNMLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVV 107
Query: 140 RLFFFIPGELELPFMALLLVIVAPHQVL---TLRGTQQGAIISLVIAGYLAFQHFSRAGN 196
+LFF L L+++ L T R + G I L I YL +H +G
Sbjct: 108 QLFFPKHAREYLELPVALVLLAVVAPNLIAGTFRDSWIGLAICLGIGCYLLQEHIRASGG 167
Query: 197 LRKAFEQGSVVA-TLAIICI 215
R AF + + ++ T+ IIC+
Sbjct: 168 FRNAFTKANGISNTVGIICL 187
>sp|O64834|CRPM3_ARATH Cold-regulated 413 plasma membrane protein 3 OS=Arabidopsis
thaliana GN=At2g23680 PE=2 SV=1
Length = 189
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 19/139 (13%)
Query: 84 LQWISTISSTVLMLAKGTA------VPKSFLVPLFALQAPADVISWIKGEYGIWAAFLAL 137
L+W+++I + LM+ T + S L P P + ++ G W A L +
Sbjct: 31 LRWLASIVAVFLMILDQTKWKYSNNIMASLLAPYLFSSLPIVIFQVLRNGVGKWIALLTV 90
Query: 138 LVRLFFFIPGE----LELPFMALLLVIVAPHQV-----LTLRGTQQGAIISLVIAGYLAF 188
++RL F+P LE+P +LL++V P + LR T G + L+ + YL
Sbjct: 91 ILRL--FLPNHFHESLEIPGATILLIVVTPSDIGAIFRDDLRYT--GGDVCLLTSFYLIN 146
Query: 189 QHFSRAGNLRKAFEQGSVV 207
+H G ++ +F Q V
Sbjct: 147 KHTKACGGIKNSFTQKDKV 165
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,618,419
Number of Sequences: 539616
Number of extensions: 2556356
Number of successful extensions: 8088
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8073
Number of HSP's gapped (non-prelim): 19
length of query: 224
length of database: 191,569,459
effective HSP length: 113
effective length of query: 111
effective length of database: 130,592,851
effective search space: 14495806461
effective search space used: 14495806461
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)