Query 027376
Match_columns 224
No_of_seqs 71 out of 73
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 09:02:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05562 WCOR413: Cold acclima 100.0 2.1E-68 4.5E-73 453.8 5.6 169 45-215 9-186 (187)
2 COG5416 Uncharacterized integr 47.1 61 0.0013 26.3 5.5 74 115-199 11-96 (98)
3 PF10167 NEP: Uncharacterised 38.2 23 0.00049 29.0 1.9 13 182-194 30-42 (118)
4 COG0395 UgpE ABC-type sugar tr 35.1 47 0.001 30.1 3.6 17 134-150 157-174 (281)
5 PRK11909 cobalt transport prot 32.2 77 0.0017 28.1 4.4 36 128-163 78-118 (230)
6 PF13231 PMT_2: Dolichyl-phosp 30.4 2.3E+02 0.005 21.1 8.0 116 94-221 40-157 (159)
7 PLN02595 cytochrome c oxidase 25.0 54 0.0012 26.7 2.0 20 171-190 47-67 (102)
8 COG3008 PqiB Paraquat-inducibl 22.9 70 0.0015 32.6 2.7 23 173-195 24-46 (553)
9 PF11466 Doppel: Prion-like pr 20.1 87 0.0019 20.8 1.8 15 179-193 9-23 (30)
10 TIGR00145 FTR1 family protein. 19.6 1.2E+02 0.0026 27.8 3.3 47 174-222 47-94 (283)
No 1
>PF05562 WCOR413: Cold acclimation protein WCOR413; InterPro: IPR008892 This family consists of several WCOR413-like plant cold acclimation proteins.
Probab=100.00 E-value=2.1e-68 Score=453.78 Aligned_cols=169 Identities=42% Similarity=0.743 Sum_probs=156.3
Q ss_pred ceeccceeccCccceeeeeeccCCCceeeeec-CCCchhhHHHHHHHHHHHHHHhc----CCCCChhhHHHHHHhhCChh
Q 027376 45 FAFNPLRLSVNHEEMKMVTKRKSRGFSAVCYA-SPLTARNLQWISTISSTVLMLAK----GTAVPKSFLVPLFALQAPAD 119 (224)
Q Consensus 45 ~~fnpl~~~~~~~~~~~~~~~~~~g~~~~c~~-a~~~t~~LqWiasiAAi~LLL~r----~TniltSLLVPyialslPs~ 119 (224)
.++|+..+++|-++.+.+ .|+++..++|++ ++++++++||++++||+|||+.| ||||+|||||||+|+|+|++
T Consensus 9 ~~~~~~~l~sd~~~l~~a--a~kl~~~a~~~~~~~~~t~~lqWias~aAi~LlildrtnwkTniltslLVPyi~lslPs~ 86 (187)
T PF05562_consen 9 SEFAAALLSSDLQELGMA--AKKLASHAICLGSLGFGTSFLQWIASIAAIYLLILDRTNWKTNILTSLLVPYIFLSLPSV 86 (187)
T ss_pred chhhhhhhccCHHHHHHH--HHhhhcceeeeccccccHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHHhCcHH
Confidence 588999999998875544 466788899995 89999999999999999999555 59999999999999999999
Q ss_pred hHHHhcCcchhHHHHHHHHHHHhh--cCCCccchhhhhhhHhhccchhhhh-hcCCchhHHHHHHHHHHHHHHHHHhhCc
Q 027376 120 VISWIKGEYGIWAAFLALLVRLFF--FIPGELELPFMALLLVIVAPHQVLT-LRGTQQGAIISLVIAGYLAFQHFSRAGN 196 (224)
Q Consensus 120 vf~~iRGe~G~WiAFlAvvlRLFF--~fP~eLELP~a~iLLiVVAP~~~~~-lRgs~~G~vIcL~IacYLl~qHir~sGG 196 (224)
+|+|+|||||+||||+|+++|||| |||||||||++++||+||||+++|+ +||+|+|++|||+|||||+|||||++||
T Consensus 87 if~~~rGe~G~WiAFlavv~RLFfp~~fP~~LElP~a~iLLivvaP~~~~~~~R~~~~G~vi~l~I~~YLl~qHi~~~Gg 166 (187)
T PF05562_consen 87 IFNWFRGEYGKWIAFLAVVLRLFFPRHFPGELELPGALILLIVVAPSQIANTFRGSQIGAVICLAIACYLLQQHIRASGG 166 (187)
T ss_pred HHHHHhccccHHHHHHHHHHHHhCcccCCchhhcchhhheeeEeCchHHHHhccCCeeehhHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999 6999999999999999999999998 5999999999999999999999999999
Q ss_pred chhhhccCc-chhhHHHHHH
Q 027376 197 LRKAFEQGS-VVATLAIICI 215 (224)
Q Consensus 197 fr~AF~q~~-v~~TigII~L 215 (224)
+||||+|++ +.||+||+++
T Consensus 167 ~r~aF~~~~gis~t~~I~ll 186 (187)
T PF05562_consen 167 FRNAFTQGSGISNTIGIILL 186 (187)
T ss_pred hhhhhhcccccceeeEEEEe
Confidence 999999999 5588888754
No 2
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=47.08 E-value=61 Score=26.33 Aligned_cols=74 Identities=28% Similarity=0.433 Sum_probs=49.4
Q ss_pred hCChhhHHHhcCcchhHHH-HHHHHHHHhh-----------cCCCccchhhhhhhHhhccchhhhhhcCCchhHHHHHHH
Q 027376 115 QAPADVISWIKGEYGIWAA-FLALLVRLFF-----------FIPGELELPFMALLLVIVAPHQVLTLRGTQQGAIISLVI 182 (224)
Q Consensus 115 slPs~vf~~iRGe~G~WiA-FlAvvlRLFF-----------~fP~eLELP~a~iLLiVVAP~~~~~lRgs~~G~vIcL~I 182 (224)
.-|.+...=.|+.+..|++ ++..++=+-| .+++-+|+|..+++|-.+ .+|..|....
T Consensus 11 g~~~v~~~r~~~~w~vi~~gilillLllifav~Nt~~V~~~~lfg~~~~PLilvil~s~-----------v~G~Li~~~~ 79 (98)
T COG5416 11 GEPAVVRKRMKGQWTVIIVGILILLLLLIFAVINTDSVEFNYLFGQWELPLILVILGAA-----------VVGALIAMFA 79 (98)
T ss_pred CCCcchhhhccceeeHHHHHHHHHHHHHHHHHhccCceEEEeecchhhhhHHHHHHHHH-----------HHHHHHHHHH
Confidence 4456666778888888886 5555554444 266779999988877543 3566666666
Q ss_pred HHHHHHHHHHhhCcchh
Q 027376 183 AGYLAFQHFSRAGNLRK 199 (224)
Q Consensus 183 acYLl~qHir~sGGfr~ 199 (224)
+.-=..||=+..+-.|+
T Consensus 80 ~~~Ri~~lrr~~krlr~ 96 (98)
T COG5416 80 GIARILQLRREVKRLRA 96 (98)
T ss_pred hHHHHHHHHHHHHHHhh
Confidence 66667777777655554
No 3
>PF10167 NEP: Uncharacterised conserved protein; InterPro: IPR019320 This entry represents the uncharacterised protein family UPF0402. It contains a characteristic NEP sequence motif. Their function is not known.
Probab=38.24 E-value=23 Score=28.97 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhh
Q 027376 182 IAGYLAFQHFSRA 194 (224)
Q Consensus 182 IacYLl~qHir~s 194 (224)
+|.|=+|||+|++
T Consensus 30 lgLYrlQeHvrks 42 (118)
T PF10167_consen 30 LGLYRLQEHVRKS 42 (118)
T ss_pred HHHHHHHHHHHHH
Confidence 6899999999986
No 4
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=35.12 E-value=47 Score=30.07 Aligned_cols=17 Identities=59% Similarity=0.968 Sum_probs=12.6
Q ss_pred HHHHHHHHhh-cCCCccc
Q 027376 134 FLALLVRLFF-FIPGELE 150 (224)
Q Consensus 134 FlAvvlRLFF-~fP~eLE 150 (224)
|-..++|=|| .+|+|||
T Consensus 157 f~ifl~~~ff~~iP~ele 174 (281)
T COG0395 157 FAIFLLRQFFRTIPKELE 174 (281)
T ss_pred HHHHHHHHHHHhCCHHHH
Confidence 3445778888 7999976
No 5
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=32.16 E-value=77 Score=28.09 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=27.3
Q ss_pred chhHHHHHHHHHHHhh-----cCCCccchhhhhhhHhhccc
Q 027376 128 YGIWAAFLALLVRLFF-----FIPGELELPFMALLLVIVAP 163 (224)
Q Consensus 128 ~G~WiAFlAvvlRLFF-----~fP~eLELP~a~iLLiVVAP 163 (224)
+|-|.|+++..+++++ ..=|+.+++.-.+...++.|
T Consensus 78 lGp~~a~la~~l~lllqal~fg~GGi~~LG~N~l~ma~v~~ 118 (230)
T PRK11909 78 LGPWAAVISISVALVIQALLFGDGGITAIGANCFNMAFVLP 118 (230)
T ss_pred HhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 5778999999998876 33456788887776667766
No 6
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=30.41 E-value=2.3e+02 Score=21.09 Aligned_cols=116 Identities=13% Similarity=0.111 Sum_probs=54.8
Q ss_pred HHHHhcCCCCChhhHHHHHHhhCChhhHHHhcCc-chhHHHHHHHHHHHhhcCCCccchhhhhhhHhhccchhhhhhcCC
Q 027376 94 VLMLAKGTAVPKSFLVPLFALQAPADVISWIKGE-YGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRGT 172 (224)
Q Consensus 94 ~LLL~r~TniltSLLVPyialslPs~vf~~iRGe-~G~WiAFlAvvlRLFF~fP~eLELP~a~iLLiVVAP~~~~~lRgs 172 (224)
|.+..|-.+-..+++.-.+....|..+..-..+. ......|.++.+=.++..-++=+..-. ++..+.=...+--|.+
T Consensus 40 y~i~r~~~~~~~a~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~k~~ 117 (159)
T PF13231_consen 40 YLIARRLFGRRAALIAALLLALSPMFIFYSASARPDMLLLFFFLLALYAFYRYIKSKKWRWW--ILAGLLLGLAFLTKYT 117 (159)
T ss_pred HHHHHHHCCchHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcchHHH--HHHHHHHHHHHHHHHH
Confidence 4445555667778888888888886655444222 333444444433333311111111111 1111111223335555
Q ss_pred chhHHHHHHHHHHHHHHHHHhhCcchhhhccCc-chhhHHHHHHHHhhhh
Q 027376 173 QQGAIISLVIAGYLAFQHFSRAGNLRKAFEQGS-VVATLAIICITALSCL 221 (224)
Q Consensus 173 ~~G~vIcL~IacYLl~qHir~sGGfr~AF~q~~-v~~TigII~L~v~p~~ 221 (224)
..-.++ ++.+|++.+ |+.+++.. ....+++.++...|.+
T Consensus 118 ~~~~~~--~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~p~l 157 (159)
T PF13231_consen 118 FLLLIP--ALLLYLLLS--------RRRLKRKIFILIAVLIALLVFLPWL 157 (159)
T ss_pred HHHHHH--HHHHHHHHH--------hHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 433333 344488877 44454433 2336666666677754
No 7
>PLN02595 cytochrome c oxidase subunit VI protein
Probab=25.04 E-value=54 Score=26.72 Aligned_cols=20 Identities=25% Similarity=0.149 Sum_probs=14.9
Q ss_pred CCchhHHHHHHHHHHHH-HHH
Q 027376 171 GTQQGAIISLVIAGYLA-FQH 190 (224)
Q Consensus 171 gs~~G~vIcL~IacYLl-~qH 190 (224)
=+..|+++|+++++|++ .||
T Consensus 47 lS~~~v~~c~~lnaY~l~~eH 67 (102)
T PLN02595 47 ITYLGIASCTALAVYVLSKGH 67 (102)
T ss_pred hhHHHhHHHHHHHHHHhhhcc
Confidence 34467999999999966 444
No 8
>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]
Probab=22.91 E-value=70 Score=32.55 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhC
Q 027376 173 QQGAIISLVIAGYLAFQHFSRAG 195 (224)
Q Consensus 173 ~~G~vIcL~IacYLl~qHir~sG 195 (224)
|.==+|.|+||++|+++|++..|
T Consensus 24 WllPivAl~igawL~~~~~~~~G 46 (553)
T COG3008 24 WLLPIVALLIGAWLLFQHVQDRG 46 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 44557899999999999999987
No 9
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=20.12 E-value=87 Score=20.76 Aligned_cols=15 Identities=40% Similarity=0.485 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHh
Q 027376 179 SLVIAGYLAFQHFSR 193 (224)
Q Consensus 179 cL~IacYLl~qHir~ 193 (224)
+++|.|-|++-|.+.
T Consensus 9 ~lAi~c~LL~s~Ls~ 23 (30)
T PF11466_consen 9 WLAIVCVLLFSHLSS 23 (30)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhH
Confidence 688999999999875
No 10
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=19.57 E-value=1.2e+02 Score=27.80 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCcc-hhhhccCcchhhHHHHHHHHhhhhh
Q 027376 174 QGAIISLVIAGYLAFQHFSRAGNL-RKAFEQGSVVATLAIICITALSCLF 222 (224)
Q Consensus 174 ~G~vIcL~IacYLl~qHir~sGGf-r~AF~q~~v~~TigII~L~v~p~~~ 222 (224)
.|+++|+++|+.+..-.-.-.++- |+-| +.+..-+|.++++.+.+|+
T Consensus 47 ~gl~~s~~~a~~~~~~~~~~~~~~~~el~--eg~~~lvAv~~l~~m~~Wm 94 (283)
T TIGR00145 47 AGFAACLAIGIGVIGAYGSLQKDEFKELL--EGIFGVIAVVMLSYMGLWM 94 (283)
T ss_pred HHHHHHHHHHHHHHHHHhhcCchhHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 555566655554432221222333 5555 2345667777777776665
Done!