Query 027376
Match_columns 224
No_of_seqs 71 out of 73
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 14:53:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bde_A VPR protein; AIDS, HIV, 26.2 37 0.0013 22.2 2.0 27 171-199 4-30 (35)
2 2f3y_B Voltage-dependent L-typ 25.3 31 0.0011 21.3 1.4 12 183-194 4-15 (26)
3 1z65_A PRPLP, prion-like prote 20.5 53 0.0018 20.8 1.8 17 178-194 8-24 (30)
4 2be6_D Voltage-dependent L-typ 18.5 58 0.002 21.5 1.8 14 180-193 10-23 (37)
5 3dvk_B Voltage-dependent R-typ 15.7 81 0.0028 18.8 1.8 14 181-194 6-19 (23)
6 3fxd_B Protein ICMR; helix bun 10.3 66 0.0022 23.5 0.3 11 20-30 61-71 (73)
7 3bbo_R Ribosomal protein L19; 9.8 62 0.0021 28.5 0.0 40 9-51 32-71 (233)
8 3esi_A Uncharacterized protein 9.1 1.1E+02 0.0038 23.7 1.2 15 144-158 36-50 (129)
9 3emu_A Leucine rich repeat and 7.0 3.7E+02 0.013 20.1 3.3 30 68-102 87-116 (161)
10 3izx_B Capsid protein VP1; cyt 7.0 2.5E+02 0.0086 30.1 3.0 38 110-153 514-552 (1333)
No 1
>1bde_A VPR protein; AIDS, HIV, viral protein, VPR fragment, helix; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1dsj_A
Probab=26.22 E-value=37 Score=22.19 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=20.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhCcchh
Q 027376 171 GTQQGAIISLVIAGYLAFQHFSRAGNLRK 199 (224)
Q Consensus 171 gs~~G~vIcL~IacYLl~qHir~sGGfr~ 199 (224)
|+|.|+---.-|---++|-|||. |++.
T Consensus 4 DTw~GveaiiriLQq~Lf~HfR~--GC~h 30 (35)
T 1bde_A 4 DTWAGVEAIIRILQQLLFIHFRI--GCRH 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhc--cCcc
Confidence 67888776666777889999987 6654
No 2
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=25.26 E-value=31 Score=21.30 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhh
Q 027376 183 AGYLAFQHFSRA 194 (224)
Q Consensus 183 acYLl~qHir~s 194 (224)
|-||+|+|+|+-
T Consensus 4 at~LIqdyfRkf 15 (26)
T 2f3y_B 4 ATFLIQEYFRKF 15 (26)
T ss_pred hhhhHHHHHHHH
Confidence 579999999973
No 3
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=20.52 E-value=53 Score=20.82 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 027376 178 ISLVIAGYLAFQHFSRA 194 (224)
Q Consensus 178 IcL~IacYLl~qHir~s 194 (224)
-+++|.|-|++.|.+..
T Consensus 8 ~wlai~c~LLfs~Ls~v 24 (30)
T 1z65_A 8 WWVAILCMLLASHLSTV 24 (30)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHhhHHHH
Confidence 37899999999998753
No 4
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=18.53 E-value=58 Score=21.49 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHh
Q 027376 180 LVIAGYLAFQHFSR 193 (224)
Q Consensus 180 L~IacYLl~qHir~ 193 (224)
=.-|-||+|+|+|+
T Consensus 10 KfYatfLIQdyFRk 23 (37)
T 2be6_D 10 KFYATFLIQEYFRK 23 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34578999999986
No 5
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=15.74 E-value=81 Score=18.84 Aligned_cols=14 Identities=7% Similarity=0.363 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhh
Q 027376 181 VIAGYLAFQHFSRA 194 (224)
Q Consensus 181 ~IacYLl~qHir~s 194 (224)
+=|.+|+|||+|+.
T Consensus 6 iYA~llI~d~~r~~ 19 (23)
T 3dvk_B 6 IYAAMMIMDYYKQS 19 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34789999999864
No 6
>3fxd_B Protein ICMR; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila subsp} PDB: 3fxe_B
Probab=10.34 E-value=66 Score=23.52 Aligned_cols=11 Identities=64% Similarity=0.936 Sum_probs=3.2
Q ss_pred cCCcchhhhhh
Q 027376 20 NINQPILTRQT 30 (224)
Q Consensus 20 ~~~~~~~~~~~ 30 (224)
..||||||..+
T Consensus 61 alnqpilttkt 71 (73)
T 3fxd_B 61 ALNQPILTTKT 71 (73)
T ss_dssp TTTC-------
T ss_pred HhcCcceeccc
Confidence 47999998765
No 7
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=9.84 E-value=62 Score=28.47 Aligned_cols=40 Identities=35% Similarity=0.318 Sum_probs=0.0
Q ss_pred CCCcceeeecccCCcchhhhhhccccccccCCCCCcceeccce
Q 027376 9 SPSTRSFSLYNNINQPILTRQTKLFGSRSFSSSWSSFAFNPLR 51 (224)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fnpl~ 51 (224)
+++.|+|||+++-+. ++-...+++.+|+++-+|..=.|-|
T Consensus 32 ~~~~~~~s~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~ 71 (233)
T 3bbo_R 32 IDSNRRFSLSSNCRS---NLMVSRASSNLFSSNFSSIFSFPAR 71 (233)
T ss_dssp -------------------------------------------
T ss_pred ccccccccccccccc---ceEeeccccccccccccchhccccc
Confidence 377899999998776 5555556888888887776544433
No 8
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum}
Probab=9.07 E-value=1.1e+02 Score=23.71 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=13.1
Q ss_pred cCCCccchhhhhhhH
Q 027376 144 FIPGELELPFMALLL 158 (224)
Q Consensus 144 ~fP~eLELP~a~iLL 158 (224)
||||.--+|+.+++=
T Consensus 36 HFPg~PVmPGVl~iE 50 (129)
T 3esi_A 36 HFTGQPLLPGVAQLD 50 (129)
T ss_dssp TTBSSCCCCHHHHHH
T ss_pred CCCCCCcCCcHHHHH
Confidence 999999999987765
No 9
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=7.04 E-value=3.7e+02 Score=20.12 Aligned_cols=30 Identities=10% Similarity=0.065 Sum_probs=19.1
Q ss_pred CCceeeeecCCCchhhHHHHHHHHHHHHHHhcCCC
Q 027376 68 RGFSAVCYASPLTARNLQWISTISSTVLMLAKGTA 102 (224)
Q Consensus 68 ~g~~~~c~~a~~~t~~LqWiasiAAi~LLL~r~Tn 102 (224)
.|--.++|.++.+.+ ++++++|||...+-+
T Consensus 87 ~~~VlVHC~~G~sRS-----~~vv~ayLm~~~~~s 116 (161)
T 3emu_A 87 KEGVLIISGTGVNKA-----PAIVIAFLMYYQRLS 116 (161)
T ss_dssp TCEEEEEESSSSSHH-----HHHHHHHHHHHTTCC
T ss_pred CCeEEEEcCCCCcHH-----HHHHHHHHHHHhCCC
Confidence 344445556666765 578888999766544
No 10
>3izx_B Capsid protein VP1; cytoplasmic polyhedrosis virus, 3D reconstruction, cryoem, F model; 3.10A {Bombyx mori cypovirus 1} PDB: 3cnf_A 3iz3_B 3j17_B*
Probab=6.98 E-value=2.5e+02 Score=30.09 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=29.4
Q ss_pred HHHHhhCChhhHHHhcCcchhHHHHHHHHHHHhh-cCCCccchhh
Q 027376 110 PLFALQAPADVISWIKGEYGIWAAFLALLVRLFF-FIPGELELPF 153 (224)
Q Consensus 110 PyialslPs~vf~~iRGe~G~WiAFlAvvlRLFF-~fP~eLELP~ 153 (224)
=++|+.+=..++.|.+|++|+ ++.|||+ ++|+|++.=.
T Consensus 514 ~ILffIffP~la~~~~g~I~n------~Ll~l~~~~~p~Ey~~FI 552 (1333)
T 3izx_B 514 FILFALFFPTEFNRIKGDIQN------VLLLFFSRWYPVEYGIFV 552 (1333)
T ss_dssp HHHHHHHSHHHHHHTTTTTHH------HHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHchHHHHHhhhHHHH------HHHHHHHHHChHHHHHHh
Confidence 345666666899999999985 7889998 7999876533
Done!