Query 027376
Match_columns 224
No_of_seqs 71 out of 73
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 14:53:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027376.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027376hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nmla1 d.330.1.1 (A:2-101) En 8.8 34 0.0025 24.8 0.0 26 7-33 10-35 (100)
2 d1neia_ d.253.1.1 (A:) Hypothe 7.4 37 0.0027 22.7 -0.3 29 98-126 20-48 (60)
3 d1di0a_ c.16.1.1 (A:) Lumazine 5.5 87 0.0063 23.1 0.8 16 144-159 42-57 (148)
4 d1b34a_ b.38.1.1 (A:) D1 core 5.1 78 0.0057 20.7 0.3 9 144-152 68-76 (80)
5 d1kz1a_ c.16.1.1 (A:) Lumazine 5.1 95 0.0069 22.9 0.8 16 144-159 50-65 (150)
6 d1yyda1 a.93.1.1 (A:1-357) Fun 4.9 1.4E+02 0.01 24.8 1.8 20 122-144 27-46 (357)
7 d1a8pa1 b.43.4.2 (A:2-100) Fer 4.6 1.2E+02 0.0091 19.8 1.1 13 3-15 51-63 (99)
8 d1nqua_ c.16.1.1 (A:) Lumazine 4.4 1.1E+02 0.0083 22.6 0.8 16 144-159 52-67 (154)
9 d1rvv1_ c.16.1.1 (1:) Lumazine 4.4 1.1E+02 0.0083 22.6 0.8 16 144-159 52-67 (154)
10 d1jb0j_ f.23.18.1 (J:) Subunit 4.4 2.7E+02 0.02 17.0 2.5 23 130-152 17-40 (41)
No 1
>d2nmla1 d.330.1.1 (A:2-101) Enhancer of rudimentary homolog, ERH {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.84 E-value=34 Score=24.77 Aligned_cols=26 Identities=19% Similarity=0.540 Sum_probs=19.3
Q ss_pred cCCCCcceeeecccCCcchhhhhhccc
Q 027376 7 SSSPSTRSFSLYNNINQPILTRQTKLF 33 (224)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (224)
+..|.+|+|+=|+.+|+-+ ..=-|+|
T Consensus 10 ~~~~~sRTy~dYeSv~~cm-egiC~iY 35 (100)
T d2nmla1 10 TKRPEGRTYADYESVNECM-EGVCKMY 35 (100)
T ss_dssp SSCGGGCEEEEESSHHHHH-HHHHHHH
T ss_pred CCCCCcceeeccccHHHHH-HHHHHHH
Confidence 5679999999999999854 2334444
No 2
>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia coli [TaxId: 562]}
Probab=7.43 E-value=37 Score=22.71 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=23.5
Q ss_pred hcCCCCChhhHHHHHHhhCChhhHHHhcC
Q 027376 98 AKGTAVPKSFLVPLFALQAPADVISWIKG 126 (224)
Q Consensus 98 ~r~TniltSLLVPyialslPs~vf~~iRG 126 (224)
|+.+..+..|++|-++-..--.++|.+||
T Consensus 20 D~e~~~~~~L~~p~~aae~vKdLvNiVRg 48 (60)
T d1neia_ 20 DYETETPMTLLVPEVAAEVIKDLVNTVRS 48 (60)
T ss_dssp EEECCCSGGGTCHHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHhcChHHHHHHHHHHHHHHhc
Confidence 44566777888999998888888888887
No 3
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId: 235]}
Probab=5.48 E-value=87 Score=23.05 Aligned_cols=16 Identities=38% Similarity=0.638 Sum_probs=13.3
Q ss_pred cCCCccchhhhhhhHh
Q 027376 144 FIPGELELPFMALLLV 159 (224)
Q Consensus 144 ~fP~eLELP~a~iLLi 159 (224)
..||-+|+|.++=-+.
T Consensus 42 ~VPGa~EiP~aa~~l~ 57 (148)
T d1di0a_ 42 DVPGAYEIPLHAKTLA 57 (148)
T ss_dssp EESSGGGHHHHHHHHH
T ss_pred EcCChhhhHHHHHHHH
Confidence 5799999999887665
No 4
>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.10 E-value=78 Score=20.75 Aligned_cols=9 Identities=33% Similarity=0.685 Sum_probs=4.9
Q ss_pred cCCCccchh
Q 027376 144 FIPGELELP 152 (224)
Q Consensus 144 ~fP~eLELP 152 (224)
|+||.++++
T Consensus 68 ~lPd~l~~~ 76 (80)
T d1b34a_ 68 ILPDSLPLD 76 (80)
T ss_dssp ECCTTCCHH
T ss_pred ECCCCcccc
Confidence 555555554
No 5
>d1kz1a_ c.16.1.1 (A:) Lumazine synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=5.06 E-value=95 Score=22.94 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=13.0
Q ss_pred cCCCccchhhhhhhHh
Q 027376 144 FIPGELELPFMALLLV 159 (224)
Q Consensus 144 ~fP~eLELP~a~iLLi 159 (224)
..||-+|+|.++=.++
T Consensus 50 ~VPGa~EiP~~~~~~~ 65 (150)
T d1kz1a_ 50 SVPGSWELPQGIRASI 65 (150)
T ss_dssp ECSSGGGHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHH
Confidence 4799999999876655
No 6
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]}
Probab=4.86 E-value=1.4e+02 Score=24.80 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=14.8
Q ss_pred HHhcCcchhHHHHHHHHHHHhhc
Q 027376 122 SWIKGEYGIWAAFLALLVRLFFF 144 (224)
Q Consensus 122 ~~iRGe~G~WiAFlAvvlRLFF~ 144 (224)
+.++||-|.+.+ -++||+||
T Consensus 27 ~~~~~~c~~~A~---~~lRL~FH 46 (357)
T d1yyda1 27 TIFQNECGEDAH---EVIRLTFH 46 (357)
T ss_dssp HTTTTSSSHHHH---HHHHHHHH
T ss_pred HHhcCCccHHHH---HHHHHHHh
Confidence 455788887644 57999997
No 7
>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}
Probab=4.55 E-value=1.2e+02 Score=19.75 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=6.5
Q ss_pred CccccCCCCccee
Q 027376 3 PFSLSSSPSTRSF 15 (224)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (224)
|||++|+|....+
T Consensus 51 ~ySi~S~p~~~~~ 63 (99)
T d1a8pa1 51 AYSIASPNYEEHL 63 (99)
T ss_dssp EEECCSCTTSSEE
T ss_pred eccccCCCCCCcE
Confidence 4555555544443
No 8
>d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]}
Probab=4.41 E-value=1.1e+02 Score=22.55 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=13.1
Q ss_pred cCCCccchhhhhhhHh
Q 027376 144 FIPGELELPFMALLLV 159 (224)
Q Consensus 144 ~fP~eLELP~a~iLLi 159 (224)
..||-+|+|.++=.+.
T Consensus 52 ~VPGa~EiP~~~~~l~ 67 (154)
T d1nqua_ 52 RVPGSWEIPVAAGELA 67 (154)
T ss_dssp EESSGGGHHHHHHHHH
T ss_pred EeCCHHHhHHHHHHHH
Confidence 5799999999886654
No 9
>d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId: 1423]}
Probab=4.41 E-value=1.1e+02 Score=22.55 Aligned_cols=16 Identities=38% Similarity=0.922 Sum_probs=12.2
Q ss_pred cCCCccchhhhhhhHh
Q 027376 144 FIPGELELPFMALLLV 159 (224)
Q Consensus 144 ~fP~eLELP~a~iLLi 159 (224)
..||-+|+|.++=-+.
T Consensus 52 ~VPGa~EiP~~~~~~~ 67 (154)
T d1rvv1_ 52 WVPGAFEIPFAAKKMA 67 (154)
T ss_dssp EESSGGGHHHHHHHHH
T ss_pred EECceeeHHHHHHHHh
Confidence 5799999998765543
No 10
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=4.36 E-value=2.7e+02 Score=17.02 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHhh-cCCCccchh
Q 027376 130 IWAAFLALLVRLFF-FIPGELELP 152 (224)
Q Consensus 130 ~WiAFlAvvlRLFF-~fP~eLELP 152 (224)
.|..|.|.++==+- .|||-|-.|
T Consensus 17 ~w~~~tAG~lIEiNRFfPD~L~~P 40 (41)
T d1jb0j_ 17 IWMTITAGILIEFNRFYPDLLFHP 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSSCC
T ss_pred HHHHHHHHHHHHHHhhCchhhcCC
Confidence 58888887664433 469987766
Done!