BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027377
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NR5|A Chain A, Crystal Structure Of Human Maf1
Length = 164
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 100/199 (50%), Gaps = 42/199 (21%)
Query: 1 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDYLGKSL 60
MK LE + + IN L + G+ I G +E+YSCK
Sbjct: 7 MKLLENSSFEAINSQL-TVETGDAHIIGRIESYSCKP----------------------- 42
Query: 61 DTDSSSPAEFLLSRSSRKALIYLVLTLYHMY-PDYDFSAVKAHQFFTEESWNTFKQIFET 119
L + SRK L YL+ TL + PDYDFS ++H+F E S +
Sbjct: 43 ----------LSDKCSRKTLFYLIATLNESFRPDYDFSTARSHEFSREPSLSWVVNAVNC 92
Query: 120 YMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNF 179
+F A +E L L+ A+DE + L EC+IYSYNPD DSDPF E G++WSFN+
Sbjct: 93 SLFSAVRE-----DFKDLKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWSFNY 147
Query: 180 FFYNRKLKRVVSFRFSCLS 198
FFYN++LKR+V FSC S
Sbjct: 148 FFYNKRLKRIVF--FSCRS 164
>pdb|3VPJ|E Chain E, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
pdb|3VPJ|F Chain F, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
pdb|3VPJ|G Chain G, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
pdb|3VPJ|H Chain H, Crystal Structure Of Type Vi Effector Tse1 From
Pseudomonas Aeruginosa In Complex With Immune Protein
Tsi1
Length = 192
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 152 PECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSFRFS 195
PE +Y + DS +D +E G IWS F ++ +RV+ FS
Sbjct: 84 PEPPVYLADRDSGNDCRIEDGGIWSRGGVFLSQDGRRVLMHEFS 127
>pdb|4FGI|B Chain B, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
pdb|4FGI|D Chain D, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
pdb|4FGI|F Chain F, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
pdb|4FGI|H Chain H, Structure Of The Effector - Immunity System Tse1 TSI1
FROM Pseudomonas Aeruginosa
Length = 151
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 152 PECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSFRFS 195
PE +Y + DS +D +E G IWS F ++ +RV+ FS
Sbjct: 43 PEPPVYLADRDSGNDCRIEDGGIWSRGGVFLSQDGRRVLXHEFS 86
>pdb|4EQA|C Chain C, Crystal Structure Of Pa1844 In Complex With Pa1845 From
Pseudomonas Aeruginosa Pao1
pdb|4EQA|D Chain D, Crystal Structure Of Pa1844 In Complex With Pa1845 From
Pseudomonas Aeruginosa Pao1
Length = 153
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 152 PECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSFRFS 195
PE +Y + DS +D +E G IWS F ++ +RV+ FS
Sbjct: 45 PEPPVYLADRDSGNDCRIEDGGIWSRGGVFLSQDGRRVLMHEFS 88
>pdb|3U44|B Chain B, Crystal Structure Of Addab-Dna Complex
pdb|3U4Q|B Chain B, Structure Of Addab-Dna Complex At 2.8 Angstroms
Length = 1166
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 153 ECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNR-KLKRVVSFRFSCLS-NLVAEGFLVNG 209
+CE++SY+ P L+K + S N +Y + KL+++V+ LS + A GF+ G
Sbjct: 855 QCELFSYDAVERLAPKLQKEILLSSNRHYYVKEKLQKIVTRVSGILSEHAKASGFVPIG 913
>pdb|3AM3|A Chain A, A372m Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan
pdb|3AM3|B Chain B, A372m Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan
pdb|3AM4|A Chain A, A372m Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan Variant T1
pdb|3AM4|B Chain B, A372m Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan Variant T1
Length = 329
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 11/48 (22%)
Query: 41 DKRLSISLEHEILDYL-----------GKSLDTDSSSPAEFLLSRSSR 77
+K++S S + +DY+ K L TD S A FLLSR SR
Sbjct: 262 EKKISASQNYTFIDYMIEYSEKYAPLRQKLLSTDIGSVASFLLSRESR 309
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,194,164
Number of Sequences: 62578
Number of extensions: 291751
Number of successful extensions: 714
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 10
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)