Query 027377
Match_columns 224
No_of_seqs 117 out of 199
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:03:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09174 Maf1: Maf1 regulator; 100.0 9.6E-68 2.1E-72 446.6 8.5 164 25-193 1-179 (179)
2 KOG3104 Mod5 protein sorting/n 100.0 1.5E-45 3.2E-50 323.6 5.4 194 1-202 1-219 (264)
3 COG5046 MAF1 Protein involved 100.0 3.4E-32 7.3E-37 236.4 5.2 159 36-201 81-248 (282)
4 COG5046 MAF1 Protein involved 98.2 4.3E-06 9.2E-11 73.9 6.4 148 1-192 123-275 (282)
5 KOG3104 Mod5 protein sorting/n 97.6 8.9E-06 1.9E-10 72.6 -1.5 168 1-192 30-257 (264)
6 PF08280 HTH_Mga: M protein tr 36.7 31 0.00067 23.6 2.2 23 74-96 30-52 (59)
7 PF03332 PMM: Eukaryotic phosp 25.6 51 0.0011 29.2 2.1 33 65-97 103-145 (220)
8 PF05717 TnpB_IS66: IS66 Orf2 20.5 58 0.0013 25.4 1.3 23 165-193 30-52 (107)
9 KOG4754 Predicted phosphoglyce 18.2 91 0.002 28.0 2.2 22 84-105 130-151 (248)
10 PF07016 CRAM_rpt: Cysteine-ri 17.2 71 0.0015 18.5 0.9 11 21-31 2-12 (24)
No 1
>PF09174 Maf1: Maf1 regulator; InterPro: IPR015257 Maf1 is a negative regulator of RNA polymerase III [, ]. It targets the initiation factor TFIIIB []. ; PDB: 3NR5_A.
Probab=100.00 E-value=9.6e-68 Score=446.58 Aligned_cols=164 Identities=48% Similarity=0.792 Sum_probs=101.4
Q ss_pred eEEEeeeeeecccCcchhhhhhhhhHHHHhHh----CC------CCC-----CCCCCCcccccccchhhHHHHHHHHHhc
Q 027377 25 TIKGCLEAYSCKHTGTDKRLSISLEHEILDYL----GK------SLD-----TDSSSPAEFLLSRSSRKALIYLVLTLYH 89 (224)
Q Consensus 25 ~i~griEaYScK~ag~DKkL~ksle~e~~~~l----s~------S~~-----~~s~SP~G~l~~~~sRKtl~yLIatLNa 89 (224)
||+||||+||||+||+||||||++++++.... ++ ||+ +.+.+|||||+++++||||+|||+|||+
T Consensus 1 ~I~gr~E~YScK~~~~dKkl~k~l~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~sp~g~L~~~~sRKtl~yLIatLNa 80 (179)
T PF09174_consen 1 HITGRIEAYSCKMAGSDKKLFKSLESELNNQDSQSLSSPQSRSLSPPSLSSSSSSSSPFGPLSDTSSRKTLFYLIATLNA 80 (179)
T ss_dssp -B-EEEEEEEE----------------------------------------------------TT-S-HHHHHHHHHHHH
T ss_pred CeeeeeecccCcCccchHHHHHHHHHHhccccccccCCcccccCCccccccccccCCCCCcccccchhhHHHHHHHHHhc
Confidence 68999999999999999999999998765422 11 111 1235999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccccccHHHHHHHHHHHhhhhchhhhhccCCCchHHHHHHHhhhhcCCCCceeEEecCCCCCCCCC
Q 027377 90 MYPDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFL 169 (224)
Q Consensus 90 sfPDYDFS~l~p~~F~~e~s~~~v~~~i~~~L~~~~~~~~~~~~~~~~~~~lW~~Id~~I~l~dC~IYsY~Pd~~~DPf~ 169 (224)
+|||||||+|||++|+||+++++|++.||++|.++++.+. .+++++||++||++|++++|+||+|.||.++|||+
T Consensus 81 sfPDYDFS~l~p~~F~~e~s~~~v~~~i~~~L~~~~~~~~-----~~~~~~lW~~Id~~i~l~~C~iYsy~pd~~~dPf~ 155 (179)
T PF09174_consen 81 SFPDYDFSNLRPEDFSREPSLQSVINSINSNLSSLGKNYY-----SGFLPWLWKAIDEEIDLKDCDIYSYNPDSDSDPFA 155 (179)
T ss_dssp HHTT---TT--GGGEEE-S-HHHHHHHHHHHHHHHHGGGH-----HHHHHHHHHHHHHHH-GGG-EEEEE---GGG-TT-
T ss_pred cCCCcccccCCHHHcEecCCHHHHHHHHHHHHHhhccccc-----hhhhHHHHHHHHHhhCccCceEEEEccCCCCCccc
Confidence 9999999999999999999999999999999999987654 25789999999999999999999999998899999
Q ss_pred CCCcchhhhheeeeCCCCeEEEEE
Q 027377 170 EKGAIWSFNFFFYNRKLKRVVSFR 193 (224)
Q Consensus 170 e~g~lWSfnyFFyNKk~KRvlf~~ 193 (224)
|+|+||||||||||||+||||||+
T Consensus 156 e~g~lws~~yff~nkk~Krv~~~~ 179 (179)
T PF09174_consen 156 EDGCLWSFNYFFYNKKLKRVLFFS 179 (179)
T ss_dssp S---SEEEEEEEEETTTTEEEEEE
T ss_pred cccchheeeeeEEecCcceEEEeC
Confidence 999999999999999999999985
No 2
>KOG3104 consensus Mod5 protein sorting/negative effector of RNA Pol III synthesis [Transcription]
Probab=100.00 E-value=1.5e-45 Score=323.59 Aligned_cols=194 Identities=37% Similarity=0.541 Sum_probs=166.1
Q ss_pred CccccCCChhHHHHHhhcccCCCceEEEeeeeeecccCcchhhhhhhhhHHHH----hHhCC--------CCCCC----C
Q 027377 1 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEIL----DYLGK--------SLDTD----S 64 (224)
Q Consensus 1 MKyLe~~~L~~ln~~Ls~~~~~d~~i~griEaYScK~ag~DKkL~ksle~e~~----~~ls~--------S~~~~----s 64 (224)
|||++.......++.|.. .+.|++|.|.+|-|+|||+++||+++|..+...+ +.|++ ||... .
T Consensus 1 ~~~~~~~~~r~~~~~l~~-~~~d~~i~~~~~~ys~~m~~sd~~~~k~~~~~~~~~~~~~L~~~s~~h~~~s~~~~~~~~~ 79 (264)
T KOG3104|consen 1 MKFSEEKEMRAFSQTLVT-PAIDQVIDGALETYSCKMVTSDLKQFKQNDNRCQRTEREDLSSYSEMHSSSSPRVGHNLRL 79 (264)
T ss_pred CCcccccCcCcccccccC-CchHHHHHHHHHhhhhhhhhhHHHHHHHhHHhhhhhhhccccchhhhccccCchhcccccc
Confidence 899999999999998874 7899999999999999999999999998876543 33321 22110 1
Q ss_pred CCCcc--------cccccchhhHHHHHHHHHhcc-CCCCCCCCCCCCCccccccHHHHHHHHHHHhhhhchhhhhccCCC
Q 027377 65 SSPAE--------FLLSRSSRKALIYLVLTLYHM-YPDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGS 135 (224)
Q Consensus 65 ~SP~G--------~l~~~~sRKtl~yLIatLNas-fPDYDFS~l~p~~F~~e~s~~~v~~~i~~~L~~~~~~~~~~~~~~ 135 (224)
.+|.| |+.+..+|++++|+|||||++ |||||||+++|++|.|++++..|++..|+.+.++.. +.
T Consensus 80 ~~~~~~~~~~s~~p~~~~~~rss~~~~~atln~~~YPD~DFSs~~~~~F~k~~~l~~~~~ien~~~s~~~~-~k------ 152 (264)
T KOG3104|consen 80 RSLSGRSCSPSDFPVGQYLSRSSKAYYIATLNLSCYPDHDFSSVTPTDFQKEPSLDPVVNIENELYSIAEH-CK------ 152 (264)
T ss_pred cCcccccCCCCCCCcccccccchHHHHHHhcCcccccCCccccCCHHHhhhcccccHHHHHHHHHHHHHHH-hh------
Confidence 23344 788888999999999999999 999999999999999999999999999988766521 11
Q ss_pred chHHHHHHHhhhhcCCCCceeEEecCCCCCCCCCCCCcchhhhheeeeCCCCeEEEEEEEeeccccc
Q 027377 136 SLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSFRFSCLSNLVA 202 (224)
Q Consensus 136 ~~~~~lW~~Id~~I~l~dC~IYsY~Pd~~~DPf~e~g~lWSfnyFFyNKk~KRvlf~~~~~~s~~~~ 202 (224)
.-.+++|.+||++|.+.+|+||+|+||.+.||+.|+|+||++|||||||++||||+|+++|+++.+.
T Consensus 153 rs~~q~w~~Ide~i~l~dC~iy~y~Pd~d~dp~~edg~iW~l~~~fYNk~lKR~v~f~~~~l~~s~s 219 (264)
T KOG3104|consen 153 RSERQLWEIIDEHIGLSDCAIYSYNPDYDFDPFGEDGLIWSLNFFFYNKKLKRFVGFSLRCLSKSVS 219 (264)
T ss_pred hcHHHHHHHhhcccchhhceeeeecCCcccCCcccchHHHHHHHHHHhhhhhheeeeeeeeeccccc
Confidence 2246799999999999999999999999999999999999999999999999999999999998763
No 3
>COG5046 MAF1 Protein involved in Mod5 protein sorting [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.4e-32 Score=236.38 Aligned_cols=159 Identities=26% Similarity=0.365 Sum_probs=140.2
Q ss_pred ccCcchhhhhhhhhHHHHhH---hC--CCCCC----CCCCCcccccccchhhHHHHHHHHHhccCCCCCCCCCCCCCccc
Q 027377 36 KHTGTDKRLSISLEHEILDY---LG--KSLDT----DSSSPAEFLLSRSSRKALIYLVLTLYHMYPDYDFSAVKAHQFFT 106 (224)
Q Consensus 36 K~ag~DKkL~ksle~e~~~~---ls--~S~~~----~s~SP~G~l~~~~sRKtl~yLIatLNasfPDYDFS~l~p~~F~~ 106 (224)
....++||++|.+++.-+.. ++ .|+.. ...+||||+.+..+|+++.||||+|||+|||||||.+.|++|.+
T Consensus 81 rs~~s~kk~~~ai~~r~~~~~~~~~s~kss~~~~s~~~~sPFgp~~e~ssr~~f~yl~a~LnasyPdhdfss~~pTdf~k 160 (282)
T COG5046 81 RSTNSDKKLFKAIENRCQEDLFALSSSKSSEYAFSLTQQSPFGPYLELSSRSKFNYLFAKLNASYPDHDFSSEAPTDFSK 160 (282)
T ss_pred cccCccchhhHHHhhcChhhhhhhccCCCcccccccccCCCCccccchhhHHHHHHHHHHHhccCCCcccccccccchhc
Confidence 35678999999998754333 32 23331 23689999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhhhhchhhhhccCCCchHHHHHHHhhhhcCCCCceeEEecCCCCCCCCCCCCcchhhhheeeeCCC
Q 027377 107 EESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKL 186 (224)
Q Consensus 107 e~s~~~v~~~i~~~L~~~~~~~~~~~~~~~~~~~lW~~Id~~I~l~dC~IYsY~Pd~~~DPf~e~g~lWSfnyFFyNKk~ 186 (224)
++++..|+..++.+|.++++.- + + .+++|+.|+.+|.+.+|+||+|.|+..++|+.++|.+|-|.+||||+++
T Consensus 161 ~~sl~rfV~k~~~tL~s~gr~r---~---~-~d~~wE~i~sh~~lSdc~v~~y~p~S~S~~~~~~~~vw~~vgFl~n~~~ 233 (282)
T COG5046 161 RRSLGRFVEKPLGTLLSAGRLR---F---P-YDFCWESIGSHRRLSDCEVLNYMPYSISTTHKNSDDVWEFVGFLENILH 233 (282)
T ss_pred chhhhhHhhhhHHHHHHhhccc---c---c-cchHHHHHhhhhhhhhhHHhhccCcccccccCChHHHHHHHHHHHHHHH
Confidence 9999999999999999998742 2 1 4799999999999999999999999889999999999999999999999
Q ss_pred CeEEEEEEEeecccc
Q 027377 187 KRVVSFRFSCLSNLV 201 (224)
Q Consensus 187 KRvlf~~~~~~s~~~ 201 (224)
|||+|+.|.|.++..
T Consensus 234 krvsyl~l~~~~~e~ 248 (282)
T COG5046 234 KRVSYLGLEIFSYEN 248 (282)
T ss_pred hhhhheeeEEeeecc
Confidence 999999999998765
No 4
>COG5046 MAF1 Protein involved in Mod5 protein sorting [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=4.3e-06 Score=73.89 Aligned_cols=148 Identities=23% Similarity=0.266 Sum_probs=102.3
Q ss_pred CccccCCChhHHHHHhhcccCCCceEEEeeeeeecccCcchhhhhhhhhHHHHhHhCCCCCCCCCCCcccccccchhhHH
Q 027377 1 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDYLGKSLDTDSSSPAEFLLSRSSRKAL 80 (224)
Q Consensus 1 MKyLe~~~L~~ln~~Ls~~~~~d~~i~griEaYScK~ag~DKkL~ksle~e~~~~ls~S~~~~s~SP~G~l~~~~sRKtl 80 (224)
|.|+|.......|-+...+++.-.-.+-.+|+||||......+. -..|.+
T Consensus 123 gp~~e~ssr~~f~yl~a~LnasyPdhdfss~~pTdf~k~~sl~r------------------------------fV~k~~ 172 (282)
T COG5046 123 GPYLELSSRSKFNYLFAKLNASYPDHDFSSEAPTDFSKRRSLGR------------------------------FVEKPL 172 (282)
T ss_pred ccccchhhHHHHHHHHHHHhccCCCcccccccccchhcchhhhh------------------------------HhhhhH
Confidence 56777777777777666555543334456888888866433222 345677
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCccccccHHHHHHHHHHHhhhhch-hhhhccCCC----chHHHHHHHhhhhcCCCCce
Q 027377 81 IYLVLTLYHMYPDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASK-EWSETYGGS----SLLETLYKALDEVVKLPECE 155 (224)
Q Consensus 81 ~yLIatLNasfPDYDFS~l~p~~F~~e~s~~~v~~~i~~~L~~~~~-~~~~~~~~~----~~~~~lW~~Id~~I~l~dC~ 155 (224)
-+|.+++-..|| |||- -+++...++.-+..+++-.+ +.+...++. .+..-|......-|.+-.|+
T Consensus 173 ~tL~s~gr~r~~-~d~~---------wE~i~sh~~lSdc~v~~y~p~S~S~~~~~~~~vw~~vgFl~n~~~krvsyl~l~ 242 (282)
T COG5046 173 GTLLSAGRLRFP-YDFC---------WESIGSHRRLSDCEVLNYMPYSISTTHKNSDDVWEFVGFLENILHKRVSYLGLE 242 (282)
T ss_pred HHHHHhhccccc-cchH---------HHHHhhhhhhhhhHHhhccCcccccccCChHHHHHHHHHHHHHHHhhhhheeeE
Confidence 799999999999 9986 34555566655555544333 322223322 23445566678899999999
Q ss_pred eEEecCCCCCCCCCCCCcchhhhheeeeCCCCeEEEE
Q 027377 156 IYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSF 192 (224)
Q Consensus 156 IYsY~Pd~~~DPf~e~g~lWSfnyFFyNKk~KRvlf~ 192 (224)
|++|+.. ..||. .|+|-|.+.|.||++.|+++.
T Consensus 243 ~~~~e~r--~g~~e--D~l~~fs~l~dd~~~~df~~d 275 (282)
T COG5046 243 IFSYENR--MGPFE--DCLWYFSFLFDDKKQRDFVMD 275 (282)
T ss_pred Eeeeccc--cCCcc--cchhhccccccCCcccchhhh
Confidence 9999997 46886 899999999999999998873
No 5
>KOG3104 consensus Mod5 protein sorting/negative effector of RNA Pol III synthesis [Transcription]
Probab=97.58 E-value=8.9e-06 Score=72.63 Aligned_cols=168 Identities=21% Similarity=0.248 Sum_probs=107.1
Q ss_pred CccccCCChhHHHHHhhcccCCCceEEEeeeeeecccCcchhhhhhhhhHHHHhHhCCCCCCCCCCCccccccc------
Q 027377 1 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDYLGKSLDTDSSSPAEFLLSR------ 74 (224)
Q Consensus 1 MKyLe~~~L~~ln~~Ls~~~~~d~~i~griEaYScK~ag~DKkL~ksle~e~~~~ls~S~~~~s~SP~G~l~~~------ 74 (224)
|+|........+++.+++.+.+-+++.+-|.+|+|+..++++++-+++..+-...++.+| +..|+|+.+..
T Consensus 30 ~~ys~~m~~sd~~~~k~~~~~~~~~~~~~L~~~s~~h~~~s~~~~~~~~~~~~~~~~~~~---s~~p~~~~~~rss~~~~ 106 (264)
T KOG3104|consen 30 ETYSCKMVTSDLKQFKQNDNRCQRTEREDLSSYSEMHSSSSPRVGHNLRLRSLSGRSCSP---SDFPVGQYLSRSSKAYY 106 (264)
T ss_pred HhhhhhhhhhHHHHHHHhHHhhhhhhhccccchhhhccccCchhcccccccCcccccCCC---CCCCcccccccchHHHH
Confidence 345555667778888887777788899999999999999999887777655443333333 11121111111
Q ss_pred ----------------------------------------------chh--------hHHHHHHHHHhccCCCCCCCCCC
Q 027377 75 ----------------------------------------------SSR--------KALIYLVLTLYHMYPDYDFSAVK 100 (224)
Q Consensus 75 ----------------------------------------------~sR--------Ktl~yLIatLNasfPDYDFS~l~ 100 (224)
.+| +.+.|+-..|-.-+|||||--
T Consensus 107 ~atln~~~YPD~DFSs~~~~~F~k~~~l~~~~~ien~~~s~~~~~krs~~q~w~~Ide~i~l~dC~iy~y~Pd~d~dp-- 184 (264)
T KOG3104|consen 107 IATLNLSCYPDHDFSSVTPTDFQKEPSLDPVVNIENELYSIAEHCKRSERQLWEIIDEHIGLSDCAIYSYNPDYDFDP-- 184 (264)
T ss_pred HHhcCcccccCCccccCCHHHhhhcccccHHHHHHHHHHHHHHHhhhcHHHHHHHhhcccchhhceeeeecCCcccCC--
Confidence 112 233344455555568888862
Q ss_pred CCCccccccHHHHHHHHHHHhhhhchhhhhccCCCchHHHHHHHhhhhcCCCCceeEEecCCCCCCCCCCCCcchhhhhe
Q 027377 101 AHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFF 180 (224)
Q Consensus 101 p~~F~~e~s~~~v~~~i~~~L~~~~~~~~~~~~~~~~~~~lW~~Id~~I~l~dC~IYsY~Pd~~~DPf~e~g~lWSfnyF 180 (224)
+ +|+.+-|+++.+ +++.... .-+ .|.... |-..+.+..|++..|..++ -|+. .+.|||.|-
T Consensus 185 -~---~edg~iW~l~~~---fYNk~lK--R~v---~f~~~~---l~~s~st~~~~~~~~~~~~--gp~e--dd~e~~s~~ 245 (264)
T KOG3104|consen 185 -F---GEDGLIWSLNFF---FYNKKLK--RFV---GFSLRC---LSKSVSTGNEEGNDFDNDM--GPLE--DDEESFSFD 245 (264)
T ss_pred -c---ccchHHHHHHHH---HHhhhhh--hee---eeeeee---ecccccccccccccccccc--Cchh--hhhcccccc
Confidence 1 455555555433 3443211 111 222222 6677889999999999874 6886 789999999
Q ss_pred eeeCCCCeEEEE
Q 027377 181 FYNRKLKRVVSF 192 (224)
Q Consensus 181 FyNKk~KRvlf~ 192 (224)
|+|+++.|+..+
T Consensus 246 F~~~~~~~~~~~ 257 (264)
T KOG3104|consen 246 FFDDEQRRMDML 257 (264)
T ss_pred cchhHHhhHHhh
Confidence 999999998763
No 6
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=36.69 E-value=31 Score=23.59 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=17.5
Q ss_pred cchhhHHHHHHHHHhccCCCCCC
Q 027377 74 RSSRKALIYLVLTLYHMYPDYDF 96 (224)
Q Consensus 74 ~~sRKtl~yLIatLNasfPDYDF 96 (224)
..|++|+.+-|.-||..||+.-.
T Consensus 30 ~~S~rti~~~i~~L~~~f~~~~~ 52 (59)
T PF08280_consen 30 NISERTIKNDINELNEFFPENIS 52 (59)
T ss_dssp TS-HHHHHHHHHHHHTT--TCCC
T ss_pred CCCHHHHHHHHHHHHHHhhhhce
Confidence 58999999999999999998643
No 7
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=25.62 E-value=51 Score=29.20 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=25.7
Q ss_pred CCCcccccccchhhHHH----------HHHHHHhccCCCCCCC
Q 027377 65 SSPAEFLLSRSSRKALI----------YLVLTLYHMYPDYDFS 97 (224)
Q Consensus 65 ~SP~G~l~~~~sRKtl~----------yLIatLNasfPDYDFS 97 (224)
-||.|+-+...-|+.+. -|++.|...||||.++
T Consensus 103 ~SpiGr~a~~eer~~f~~~D~~~~iR~~~v~~L~~~f~d~~L~ 145 (220)
T PF03332_consen 103 FSPIGRNASQEERDEFDEYDKKHKIREKLVEALKKEFPDFGLT 145 (220)
T ss_dssp E-SS-TTS-HHHHHHHHHHHHHHTHHHHHHHHHHHHTCCCSEE
T ss_pred ECcccCcCCHHHHHhhhhcChhhhHHHHHHHHHHHHCCCCceE
Confidence 58999999888888773 6999999999999864
No 8
>PF05717 TnpB_IS66: IS66 Orf2 like protein; InterPro: IPR008878 Thess proteins are found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.50 E-value=58 Score=25.36 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=17.5
Q ss_pred CCCCCCCCcchhhhheeeeCCCCeEEEEE
Q 027377 165 SDPFLEKGAIWSFNFFFYNRKLKRVVSFR 193 (224)
Q Consensus 165 ~DPf~e~g~lWSfnyFFyNKk~KRvlf~~ 193 (224)
.||+. |+ -|.|+||++.||=.++
T Consensus 30 ~dp~~--g~----~fvF~nr~r~riKiL~ 52 (107)
T PF05717_consen 30 LDPFS--GD----LFVFCNRRRDRIKILY 52 (107)
T ss_pred CCCCc--ce----EEEEEeccCCceEEEe
Confidence 46886 53 5799999999986653
No 9
>KOG4754 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=18.17 E-value=91 Score=27.96 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=17.9
Q ss_pred HHHHhccCCCCCCCCCCCCCcc
Q 027377 84 VLTLYHMYPDYDFSAVKAHQFF 105 (224)
Q Consensus 84 IatLNasfPDYDFS~l~p~~F~ 105 (224)
|+-+++-||-||||....+.+.
T Consensus 130 v~~~~~lfp~~DFs~~~~dv~~ 151 (248)
T KOG4754|consen 130 VTDLMKLFPAYDFSLCETDVDP 151 (248)
T ss_pred hHHHHhhcccccceeeccCcch
Confidence 5678999999999998766544
No 10
>PF07016 CRAM_rpt: Cysteine-rich acidic integral membrane protein precursor; InterPro: IPR009745 This entry represents a 24 residue repeated motif from the Trypanosoma brucei cysteine-rich, acidic integral membrane protein precursor (CRAM). CRAM is concentrated in the flagellar pocket, an invagination of the cell surface of the trypanosome where endocytosis has been documented [].
Probab=17.16 E-value=71 Score=18.49 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=7.2
Q ss_pred CCCceEEEeee
Q 027377 21 LGERTIKGCLE 31 (224)
Q Consensus 21 ~~d~~i~griE 31 (224)
++||.|+|.|-
T Consensus 2 T~dC~lTGeCs 12 (24)
T PF07016_consen 2 TGDCNLTGECS 12 (24)
T ss_pred Cccceeecccc
Confidence 56777777654
Done!