Query 027377
Match_columns 224
No_of_seqs 117 out of 199
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 14:54:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nr5_A MAF1, repressor of RNA 100.0 1.8E-69 6.1E-74 449.1 10.7 157 1-196 7-164 (164)
2 1k8v_A Neuropeptide F; moniezi 17.1 1.5E+02 0.005 18.6 3.3 34 92-125 1-35 (40)
3 1i17_A Mouse doppel, prion-lik 16.2 72 0.0025 23.7 2.0 20 138-157 82-101 (107)
4 1xg8_A Hypothetical protein SA 13.8 98 0.0034 23.5 2.2 25 74-98 26-50 (111)
5 1lg4_A Doppel protein, prion-l 13.3 53 0.0018 25.2 0.6 19 138-156 106-124 (129)
6 3ulx_A Stress-induced transcri 10.4 32 0.0011 27.9 -1.5 13 151-163 47-59 (174)
7 2uvp_A HOBA; hypothetical prot 9.4 5E+02 0.017 21.3 5.3 87 1-99 29-121 (186)
8 1hle_B Horse leukocyte elastas 8.4 1.9E+02 0.0065 16.2 1.8 16 177-192 10-25 (31)
9 1no1_A G39P, replisome organiz 7.4 2.4E+02 0.0081 21.7 2.4 22 76-97 2-24 (126)
10 2riv_B Thyroxine-binding globu 7.3 2.2E+02 0.0075 17.1 1.8 16 177-192 16-31 (40)
No 1
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=100.00 E-value=1.8e-69 Score=449.10 Aligned_cols=157 Identities=46% Similarity=0.822 Sum_probs=147.2
Q ss_pred CccccCCChhHHHHHhhcccCCCceEEEeeeeeecccCcchhhhhhhhhHHHHhHhCCCCCCCCCCCcccccccchhhHH
Q 027377 1 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDYLGKSLDTDSSSPAEFLLSRSSRKAL 80 (224)
Q Consensus 1 MKyLe~~~L~~ln~~Ls~~~~~d~~i~griEaYScK~ag~DKkL~ksle~e~~~~ls~S~~~~s~SP~G~l~~~~sRKtl 80 (224)
||+||+.+|++||++|+ +++|||+|.||||+|||| ||+++++||||
T Consensus 7 ~~~~~~~~~~~ln~~l~-~~~gd~~i~g~iEayScK---------------------------------pL~~~~SRKTl 52 (164)
T 3nr5_A 7 MKLLENSSFEAINSQLT-VETGDAHIIGRIESYSCK---------------------------------PLSDKCSRKTL 52 (164)
T ss_dssp EEEECCHHHHHHHHHSB-CC--CCCBCEEEEEEEEC---------------------------------CCCTTCSCHHH
T ss_pred hHHhccCCHHHHHhhhc-eecCceEEEEEEeeeccc---------------------------------ccccchhhhhH
Confidence 89999999999999997 899999999999999999 56778999999
Q ss_pred HHHHHHHhccC-CCCCCCCCCCCCccccccHHHHHHHHHHHhhhhchhhhhccCCCchHHHHHHHhhhhcCCCCceeEEe
Q 027377 81 IYLVLTLYHMY-PDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSY 159 (224)
Q Consensus 81 ~yLIatLNasf-PDYDFS~l~p~~F~~e~s~~~v~~~i~~~L~~~~~~~~~~~~~~~~~~~lW~~Id~~I~l~dC~IYsY 159 (224)
+|||||||++| ||||||+|||++|+||+++++|++.||++|.++++.. + .++.++||++||++|+|++|+||+|
T Consensus 53 ~yLIaTLNasf~PDYDFS~lrp~~F~re~sl~~V~~~In~~L~s~~~~~---~--~~~~~~lW~~Id~~I~l~dC~IYsY 127 (164)
T 3nr5_A 53 FYLIATLNESFRPDYDFSTARSHEFSREPSLSWVVNAVNCSLFSAVRED---F--KDLKPQLWNAVDEEICLAECDIYSY 127 (164)
T ss_dssp HHHHHHHHHHHTTTCCCTTCCGGGEEECSCHHHHHHHHHHHHHHHHGGG---H--HHHHHHHHHHHHHHHCGGGCEEEEE
T ss_pred HHHHHHHHhhcCCCCCcCCCCHHHCEecCCHHHHHHHHHHHHHHhcccc---c--hhhHHHHHHHHhhhcCccCCeEEEE
Confidence 99999999999 9999999999999999999999999999999987632 1 2688999999999999999999999
Q ss_pred cCCCCCCCCCCCCcchhhhheeeeCCCCeEEEEEEEe
Q 027377 160 NPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSFRFSC 196 (224)
Q Consensus 160 ~Pd~~~DPf~e~g~lWSfnyFFyNKk~KRvlf~~~~~ 196 (224)
+|+.++|||+|+|+||||||||||||+||||||+|||
T Consensus 128 ~Pd~~~DPf~e~g~lWSfnYFFyNKklKRVl~f~cr~ 164 (164)
T 3nr5_A 128 NPDLDSDPFGEDGSLWSFNYFFYNKRLKRIVFFSCRS 164 (164)
T ss_dssp CCCGGGCTTCSCCCSCEEEEEEEETTTTEEEEEEEEC
T ss_pred cCCCCCCCCCCCCceeeeeeeEEecCcceEEEEEEeC
Confidence 9998889999999999999999999999999999986
No 2
>1k8v_A Neuropeptide F; moniezia expansa, NPF, unknown function; NMR {Synthetic} SCOP: j.6.1.1
Probab=17.08 E-value=1.5e+02 Score=18.58 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=25.4
Q ss_pred CCCCCCC-CCCCCccccccHHHHHHHHHHHhhhhc
Q 027377 92 PDYDFSA-VKAHQFFTEESWNTFKQIFETYMFEAS 125 (224)
Q Consensus 92 PDYDFS~-l~p~~F~~e~s~~~v~~~i~~~L~~~~ 125 (224)
||-||-. -+|+.|....-+..-++.+|....-.|
T Consensus 1 ~~~~~~~pp~p~~F~s~~~l~~YL~~LneYyai~G 35 (40)
T 1k8v_A 1 PDKDFIVNPSDLVLDNKAALRDYLRQINEYFAIIG 35 (40)
T ss_dssp CCCSCSSCSTTCSCSSCSHHHHHHHHHHHHHHHHH
T ss_pred CccccCCCCChhhcCCHHHHHHHHHHHHHHHHHhc
Confidence 7888876 488999988888888888887654333
No 3
>1i17_A Mouse doppel, prion-like protein; DPL, unknown function; NMR {Mus musculus} SCOP: d.6.1.1
Probab=16.21 E-value=72 Score=23.74 Aligned_cols=20 Identities=15% Similarity=0.607 Sum_probs=17.3
Q ss_pred HHHHHHHhhhhcCCCCceeE
Q 027377 138 LETLYKALDEVVKLPECEIY 157 (224)
Q Consensus 138 ~~~lW~~Id~~I~l~dC~IY 157 (224)
..-||+.|.+.-+++.||..
T Consensus 82 qriLwrLirElCs~k~Cdfw 101 (107)
T 1i17_A 82 QRVLWRLIKEICSAKHCDFW 101 (107)
T ss_dssp HHHHHHHHHHHHHHCCCTTC
T ss_pred HHHHHHHHHHHhccccceee
Confidence 35799999999999999853
No 4
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=13.82 E-value=98 Score=23.49 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.7
Q ss_pred cchhhHHHHHHHHHhccCCCCCCCC
Q 027377 74 RSSRKALIYLVLTLYHMYPDYDFSA 98 (224)
Q Consensus 74 ~~sRKtl~yLIatLNasfPDYDFS~ 98 (224)
++|+.|+=.|-|+|.--||+.-|+-
T Consensus 26 PSSkeTyEWLqAal~RKyp~~~f~~ 50 (111)
T 1xg8_A 26 PTSKDIYDWLQPLLKRKYPNISFKY 50 (111)
T ss_dssp CCHHHHHHHHHHHHHHHCTTSCEEE
T ss_pred CCchhHHHHHHHHHhCcCCCCceEE
Confidence 5899999999999999999987764
No 5
>1lg4_A Doppel protein, prion-like protein; scrapie, prion protein; NMR {Homo sapiens} SCOP: d.6.1.1
Probab=13.31 E-value=53 Score=25.20 Aligned_cols=19 Identities=26% Similarity=0.663 Sum_probs=16.9
Q ss_pred HHHHHHHhhhhcCCCCcee
Q 027377 138 LETLYKALDEVVKLPECEI 156 (224)
Q Consensus 138 ~~~lW~~Id~~I~l~dC~I 156 (224)
..-||++|.+.-+++.||.
T Consensus 106 qRiLwrLirElCs~k~Cdf 124 (129)
T 1lg4_A 106 QQVLWRLVQELCSLKHCEF 124 (129)
T ss_dssp HHHHHHHHHHHHHSSCCSS
T ss_pred HHHHHHHHHHHhcccccce
Confidence 3579999999999999985
No 6
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=10.43 E-value=32 Score=27.95 Aligned_cols=13 Identities=23% Similarity=0.777 Sum_probs=10.1
Q ss_pred CCCceeEEecCCC
Q 027377 151 LPECEIYSYNPDS 163 (224)
Q Consensus 151 l~dC~IYsY~Pd~ 163 (224)
+.++|||.+.|-.
T Consensus 47 I~evDvy~~~Pw~ 59 (174)
T 3ulx_A 47 IAEVDLYKFDPWD 59 (174)
T ss_dssp CEECCGGGSCGGG
T ss_pred eeecccccCCchh
Confidence 4568999999863
No 7
>2uvp_A HOBA; hypothetical protein, unknown function, DNAA, SIS fold, DNA replication; 1.7A {Helicobacter pylori} PDB: 2uvp_B 2wp0_A
Probab=9.39 E-value=5e+02 Score=21.30 Aligned_cols=87 Identities=13% Similarity=0.044 Sum_probs=47.7
Q ss_pred CccccCCChhHHH---HHhhcccCCCceEEEeeeeeecccCcchhhhhhhhhHHHHhHhCCCCC-CCCCCCcccccc--c
Q 027377 1 MKFLEYTPLDRIN---DFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDYLGKSLD-TDSSSPAEFLLS--R 74 (224)
Q Consensus 1 MKyLe~~~L~~ln---~~Ls~~~~~d~~i~griEaYScK~ag~DKkL~ksle~e~~~~ls~S~~-~~s~SP~G~l~~--~ 74 (224)
|.+||+..++.+. +.|+++-.|.+.|-. . ..+|+= ++..++..+.++|+ .-.-=|+-.+.. .
T Consensus 29 ~~WlEe~R~eW~pL~a~~l~~il~G~s~ivi-T--------D~~R~W---F~~Yil~~IN~~~~~~RP~lPi~~l~~~~l 96 (186)
T 2uvp_A 29 SGWLELERSSYAKLIAQTISHVLNGGSLLVS-A--------DSSRHW---FLNYILSNLNPKDLKERPLLSVIDFNASSF 96 (186)
T ss_dssp TTGGGGCCSCHHHHHHHHHHHHHTTCEEEEE-E--------CGGGHH---HHHHHHHHHSCSCCTTCCCCCEEESTTSTT
T ss_pred ccHHHHHhhccHHHHHHHHHHHhCCCeEEEE-e--------CchHHH---HHHHHHHHhcCccccCCCcceEEecccccc
Confidence 5678888877654 566655445554442 2 223332 35567777766632 221223333332 1
Q ss_pred chhhHHHHHHHHHhccCCCCCCCCC
Q 027377 75 SSRKALIYLVLTLYHMYPDYDFSAV 99 (224)
Q Consensus 75 ~sRKtl~yLIatLNasfPDYDFS~l 99 (224)
-...-...+..+||-+||+.=|=.+
T Consensus 97 ~p~e~~~Li~DmL~isf~n~~fWYI 121 (186)
T 2uvp_A 97 YPKNDANLSLATIEMTYQNPMFWHV 121 (186)
T ss_dssp SCSSCHHHHHHHHHHHBSSEEEEEE
T ss_pred CchhhHHHHHHHHHhhccCCeEEEE
Confidence 2225557888999999998744334
No 8
>1hle_B Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Probab=8.44 E-value=1.9e+02 Score=16.23 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=13.1
Q ss_pred hhheeeeCCCCeEEEE
Q 027377 177 FNFFFYNRKLKRVVSF 192 (224)
Q Consensus 177 fnyFFyNKk~KRvlf~ 192 (224)
|.|+..++..+.|||+
T Consensus 10 Flf~I~~~~t~~iLF~ 25 (31)
T 1hle_B 10 FIFFIRHNPSANILFL 25 (31)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred EEEEEEECCCCcEEEE
Confidence 4588888888999985
No 9
>1no1_A G39P, replisome organizer, gene 39; helical, bipartite, natively unfolded domain, replication; 2.40A {Bacillus phage SPP1} SCOP: a.179.1.1
Probab=7.43 E-value=2.4e+02 Score=21.69 Aligned_cols=22 Identities=14% Similarity=0.424 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHhccCCC-CCCC
Q 027377 76 SRKALIYLVLTLYHMYPD-YDFS 97 (224)
Q Consensus 76 sRKtl~yLIatLNasfPD-YDFS 97 (224)
+|+-++-|++++.++||. |+|.
T Consensus 2 tk~E~~~lL~lI~~aYP~~f~~d 24 (126)
T 1no1_A 2 IEKDVVQILKAVSEFYPGRFQPD 24 (126)
T ss_dssp CHHHHHHHHHHHHHHSTTTCCCT
T ss_pred CHHHHHHHHHHHHHHCHHHhcCc
Confidence 467788999999999995 8886
No 10
>2riv_B Thyroxine-binding globulin; TBG, serpin, cleaved, mutation, glycoprotein, secreted, signaling protein; 1.50A {Homo sapiens} PDB: 2riw_B* 2xn3_B*
Probab=7.31 E-value=2.2e+02 Score=17.09 Aligned_cols=16 Identities=13% Similarity=0.434 Sum_probs=13.4
Q ss_pred hhheeeeCCCCeEEEE
Q 027377 177 FNFFFYNRKLKRVVSF 192 (224)
Q Consensus 177 fnyFFyNKk~KRvlf~ 192 (224)
|.|+.+.+..+.|||+
T Consensus 16 Flf~I~~~~t~~iLF~ 31 (40)
T 2riv_B 16 FMLLILERSTRSILFL 31 (40)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred EEEEEEeCCCCcEEEE
Confidence 4588889999999996
Done!