Query 027377
Match_columns 224
No_of_seqs 117 out of 199
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 14:55:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027377.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027377hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ut7a_ b.143.1.1 (A:) No apic 11.6 6.1 0.00044 29.6 -3.5 12 151-162 49-60 (166)
2 d1p35a_ b.28.1.1 (A:) Baculovi 7.8 1.3E+02 0.0094 24.3 3.2 25 178-203 266-290 (299)
3 d1xg8a_ c.47.1.17 (A:) Hypothe 7.5 1.2E+02 0.0085 21.2 2.5 25 74-98 26-50 (111)
4 d1s2ma1 c.37.1.19 (A:46-251) P 7.5 89 0.0065 22.7 2.0 22 73-94 46-67 (206)
5 d1qgoa_ c.92.1.2 (A:) Cobalt c 7.2 87 0.0064 23.7 1.9 51 68-118 9-69 (257)
6 d1t6na_ c.37.1.19 (A:) Spliceo 6.6 1.1E+02 0.0078 22.4 2.1 38 74-115 47-84 (207)
7 d2k2na1 d.110.2.1 (A:31-200) S 6.2 1.2E+02 0.0089 20.9 2.1 20 145-164 12-31 (170)
8 d1wrba1 c.37.1.19 (A:164-401) 6.2 1E+02 0.0073 23.3 1.7 19 73-91 66-84 (238)
9 d1q0ua_ c.37.1.19 (A:) Probabl 6.1 1.5E+02 0.011 21.1 2.7 20 74-93 47-66 (209)
10 d1wgla_ a.5.2.4 (A:) Toll-inte 6.0 94 0.0068 19.3 1.1 13 83-95 12-24 (59)
No 1
>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=11.60 E-value=6.1 Score=29.64 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=8.8
Q ss_pred CCCceeEEecCC
Q 027377 151 LPECEIYSYNPD 162 (224)
Q Consensus 151 l~dC~IYsY~Pd 162 (224)
+.+|+||.+.|.
T Consensus 49 I~~~Dvy~~~Pw 60 (166)
T d1ut7a_ 49 IAEIDLYKFDPW 60 (166)
T ss_dssp SEECCGGGSCGG
T ss_pred ceeccCCcCChh
Confidence 467788887775
No 2
>d1p35a_ b.28.1.1 (A:) Baculovirus p35 protein {AcMNPV (Autographa californica nuclear polyhedrosis virus) [TaxId: 46015]}
Probab=7.79 E-value=1.3e+02 Score=24.25 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=18.9
Q ss_pred hheeeeCCCCeEEEEEEEeecccccc
Q 027377 178 NFFFYNRKLKRVVSFRFSCLSNLVAE 203 (224)
Q Consensus 178 nyFFyNKk~KRvlf~~~~~~s~~~~~ 203 (224)
|=|.|.||+| |||+.++-++...+.
T Consensus 266 ~~fiyd~k~k-~lyvklhnvts~~n~ 290 (299)
T d1p35a_ 266 NGFIYDKKSK-VLYVKLHNVTSALNK 290 (299)
T ss_dssp EEEEEETTTT-EEEEEEEEEEESCCC
T ss_pred cceeecccce-EEEEEeehhhhhhcc
Confidence 4589999965 899999888765543
No 3
>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}
Probab=7.55 E-value=1.2e+02 Score=21.24 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.7
Q ss_pred cchhhHHHHHHHHHhccCCCCCCCC
Q 027377 74 RSSRKALIYLVLTLYHMYPDYDFSA 98 (224)
Q Consensus 74 ~~sRKtl~yLIatLNasfPDYDFS~ 98 (224)
++|+.|+=.|-|+|---||+.-|.-
T Consensus 26 PSSkeTyEWLqaal~RKyp~~~f~~ 50 (111)
T d1xg8a_ 26 PTSKDIYDWLQPLLKRKYPNISFKY 50 (111)
T ss_dssp CCHHHHHHHHHHHHHHHCTTSCEEE
T ss_pred CCchhHHHHHHHHHhCcCCCCceEE
Confidence 5899999999999999999987764
No 4
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.54 E-value=89 Score=22.71 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=18.5
Q ss_pred ccchhhHHHHHHHHHhccCCCC
Q 027377 73 SRSSRKALIYLVLTLYHMYPDY 94 (224)
Q Consensus 73 ~~~sRKtl~yLIatLNasfPDY 94 (224)
.+.+-||++|++.+++...++-
T Consensus 46 ~tGsGKTlay~lp~i~~~~~~~ 67 (206)
T d1s2ma1 46 KNGTGKTAAFVIPTLEKVKPKL 67 (206)
T ss_dssp CTTSCHHHHHHHHHHHHCCTTS
T ss_pred CCcchhhhhhcccccccccccc
Confidence 3678999999999999987653
No 5
>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium [TaxId: 90371]}
Probab=7.22 E-value=87 Score=23.74 Aligned_cols=51 Identities=12% Similarity=-0.009 Sum_probs=32.2
Q ss_pred cccccccchhhHHHHHHHHHhccCCCCCCCCC-CC---------CCccccccHHHHHHHHH
Q 027377 68 AEFLLSRSSRKALIYLVLTLYHMYPDYDFSAV-KA---------HQFFTEESWNTFKQIFE 118 (224)
Q Consensus 68 ~G~l~~~~sRKtl~yLIatLNasfPDYDFS~l-~p---------~~F~~e~s~~~v~~~i~ 118 (224)
||.-.+..-++++--+..-+.+.|||+++-.. .+ .+-...|++..++..+-
T Consensus 9 fGs~~~e~~~~~i~~i~~~v~~~~Pd~~V~~afts~~~~~~~~~~~~~~~p~~~eal~~l~ 69 (257)
T d1qgoa_ 9 FGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMIIRKLRQRDGIDIDTPLQALQKLA 69 (257)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTCTTSEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHHHHCCCCeEEeeehhhHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence 55533334457899999999999999986422 11 11233577777766553
No 6
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.61 E-value=1.1e+02 Score=22.43 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=24.4
Q ss_pred cchhhHHHHHHHHHhccCCCCCCCCCCCCCccccccHHHHHH
Q 027377 74 RSSRKALIYLVLTLYHMYPDYDFSAVKAHQFFTEESWNTFKQ 115 (224)
Q Consensus 74 ~~sRKtl~yLIatLNasfPDYDFS~l~p~~F~~e~s~~~v~~ 115 (224)
+.|=||++|++.+++...+.- -+|.-....|+.+-+.+
T Consensus 47 TGsGKTla~~lp~l~~~~~~~----~~~~~lil~PtreL~~q 84 (207)
T d1t6na_ 47 SGMGKTAVFVLATLQQLEPVT----GQVSVLVMCHTRELAFQ 84 (207)
T ss_dssp TTSCHHHHHHHHHHHHCCCCT----TCCCEEEECSCHHHHHH
T ss_pred cccccccccccceeeeecccC----CCceEEEEeccchhhHH
Confidence 567799999999999865432 23344555566444433
No 7
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]}
Probab=6.20 E-value=1.2e+02 Score=20.86 Aligned_cols=20 Identities=10% Similarity=0.517 Sum_probs=15.4
Q ss_pred hhhhcCCCCceeEEecCCCC
Q 027377 145 LDEVVKLPECEIYSYNPDSD 164 (224)
Q Consensus 145 Id~~I~l~dC~IYsY~Pd~~ 164 (224)
|.+....+-|-||.|.|+..
T Consensus 12 l~~~l~~dRv~iy~f~~d~~ 31 (170)
T d2k2na1 12 VRAFLGTDRVKVYRFDPEGH 31 (170)
T ss_dssp HHHHHCCSEEEEEECCTTSC
T ss_pred HHHHhCCCeEEEEEEcCCCC
Confidence 44456788899999999853
No 8
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=6.19 E-value=1e+02 Score=23.27 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=16.0
Q ss_pred ccchhhHHHHHHHHHhccC
Q 027377 73 SRSSRKALIYLVLTLYHMY 91 (224)
Q Consensus 73 ~~~sRKtl~yLIatLNasf 91 (224)
.+.+=||++|||.+|+.--
T Consensus 66 ~TGsGKTlayllp~l~~l~ 84 (238)
T d1wrba1 66 QTGSGKTAAFLIPIINHLV 84 (238)
T ss_dssp CTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCcceeeHHHHHHHHH
Confidence 3678899999999998753
No 9
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}
Probab=6.06 E-value=1.5e+02 Score=21.06 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=17.2
Q ss_pred cchhhHHHHHHHHHhccCCC
Q 027377 74 RSSRKALIYLVLTLYHMYPD 93 (224)
Q Consensus 74 ~~sRKtl~yLIatLNasfPD 93 (224)
+.|=||++|++.+++.....
T Consensus 47 TGSGKTlayllp~l~~~~~~ 66 (209)
T d1q0ua_ 47 TGTGKTHAYLLPIMEKIKPE 66 (209)
T ss_dssp SSHHHHHHHHHHHHHHCCTT
T ss_pred cccccceeeeeeeccccccc
Confidence 67889999999999987644
No 10
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.01 E-value=94 Score=19.30 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=11.1
Q ss_pred HHHHHhccCCCCC
Q 027377 83 LVLTLYHMYPDYD 95 (224)
Q Consensus 83 LIatLNasfPDYD 95 (224)
-|.+|-..||+.|
T Consensus 12 ~i~~LkeMFP~~D 24 (59)
T d1wgla_ 12 DLKAIQDMFPNMD 24 (59)
T ss_dssp HHHHHHHHCSSSC
T ss_pred HHHHHHHHCCCCC
Confidence 3778889999998
Done!