BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027380
MLETMESSVNGGFSQLQSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVPWNISDLASDDTQKSHRS
KLRTHKSTGSSHKTTSRSLSCDSHSQSKGSISTPGSMKIDLSKLEMGALWRYWRHFNLVD
AIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK

High Scoring Gene Products

Symbol, full name Information P value
AT1G75060 protein from Arabidopsis thaliana 3.9e-76
SAP30
Uncharacterized protein 		protein from Sus scrofa 8.8e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027380
        (224 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2037286 - symbol:AT1G75060 "AT1G75060" species...   767  3.9e-76   1
UNIPROTKB|I3LU53 - symbol:SAP30 "Uncharacterized protein"...    97  8.8e-05   1


>TAIR|locus:2037286 [details] [associations]
            symbol:AT1G75060 "AT1G75060" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR025718 Pfam:PF13867 EMBL:CP002684
            GenomeReviews:CT485782_GR EMBL:AC013258 InterPro:IPR024145
            PANTHER:PTHR13286 EMBL:AY800619 EMBL:AY954775 IPI:IPI00524354
            PIR:F96780 RefSeq:NP_177643.1 UniGene:At.51201
            ProteinModelPortal:Q9C9Q1 SMR:Q9C9Q1 EnsemblPlants:AT1G75060.1
            GeneID:843844 KEGG:ath:AT1G75060 TAIR:At1g75060
            HOGENOM:HOG000005661 InParanoid:Q9C9Q1 OMA:VSCDSHS PhylomeDB:Q9C9Q1
            ProtClustDB:CLSN2714885 Genevestigator:Q9C9Q1 Uniprot:Q9C9Q1
        Length = 242

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 155/218 (71%), Positives = 177/218 (81%)

Query:    11 GGFSQLQS-YGD-SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLV 68
             GGFSQLQS +GD SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLV
Sbjct:    17 GGFSQLQSCFGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLV 76

Query:    69 LTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDN-VPWNI-SDLASDDTQKSHRSKLXXXX 126
             LTNGIEVKLQRNALSV+E PTGNEED+DLE D+   WN  SD+ ++DT K H+SK     
Sbjct:    77 LTNGIEVKLQRNALSVLEHPTGNEEDNDLEVDHSTQWNHPSDMTTEDTLKPHKSKKRGHR 136

Query:   127 XXXXXXXXXXXXLSCDSHSQSKGSISTPGSMKIDLSKLEMGALWRYWRHFNLVDAIPNPS 186
                         +SCDSHS+   SI+   +MK+DL+KL+M AL RYWRHFNLVDA+PNP+
Sbjct:   137 SSRLSQKALYREVSCDSHSKIS-SITPRLNMKVDLTKLDMAALLRYWRHFNLVDALPNPT 195

Query:   187 REQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTVCK 224
             +EQLID++QRHFMSQQMDELQVIVGFVQAA  +K  C+
Sbjct:   196 KEQLIDIIQRHFMSQQMDELQVIVGFVQAATGMKKACQ 233


>UNIPROTKB|I3LU53 [details] [associations]
            symbol:SAP30 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003714 "transcription corepressor activity"
            evidence=IEA] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0000118 "histone
            deacetylase complex" evidence=IEA] InterPro:IPR025718 Pfam:PF13867
            GO:GO:0003714 GO:GO:0000122 GO:GO:0000118
            GeneTree:ENSGT00390000006633 InterPro:IPR024145 InterPro:IPR025717
            PANTHER:PTHR13286 Pfam:PF13866 Ensembl:ENSSSCT00000026252
            OMA:QDIDAPE Uniprot:I3LU53
        Length = 124

 Score = 97 (39.2 bits), Expect = 8.8e-05, P = 8.8e-05
 Identities = 24/70 (34%), Positives = 39/70 (55%)

Query:   151 ISTPGSMKIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIV 210
             I TP   ++DL +L++  L RY RHF L    P  ++ QL+++V  HF S  ++E   + 
Sbjct:    47 IDTP---EVDLYQLQVNTLRRYKRHFKLPTR-PGLNKAQLVEIVGCHFRSIPVNEKDTLT 102

Query:   211 GFVQAAKRLK 220
              F+ + K  K
Sbjct:   103 YFIYSVKNDK 112


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      224       208   0.00077  112 3  11 23  0.40    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  171 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  17.08u 0.14s 17.22t   Elapsed:  00:00:01
  Total cpu time:  17.08u 0.14s 17.22t   Elapsed:  00:00:02
  Start:  Fri May 10 12:20:30 2013   End:  Fri May 10 12:20:32 2013

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