BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027380
         (224 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LD7|A Chain A, Solution Structure Of The Msin3a Pah3-Sap30 Sid Complex
          Length = 94

 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 151 ISTPGSMKIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIV 210
           I TP   ++DL +L++  L RY RHF L    P  ++ QL+++V  HF S  ++E   + 
Sbjct: 17  IDTP---EVDLYQLQVNTLRRYKRHFKLP-TRPGLNKAQLVEIVGCHFKSIPVNEKDTLT 72

Query: 211 GFVQAAKRLK 220
            F+ + +  K
Sbjct: 73  CFIYSVRNDK 82


>pdb|3FVB|A Chain A, Crystal Structure Of Ferritin (Bacterioferritin) From
           Brucella Melitensis
 pdb|3FVB|B Chain B, Crystal Structure Of Ferritin (Bacterioferritin) From
           Brucella Melitensis
          Length = 182

 Score = 28.5 bits (62), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 12/78 (15%)

Query: 145 SQSKGSISTPGSMKI-----DLSKLEMGALWRYWRHFNLVD-----AIPNPSREQLIDVV 194
           +Q++G  S  G  K+     +   LE+GA+ +YW H+ L++      +    RE+ I+  
Sbjct: 14  AQTQGPGSMKGEPKVIERLNEALFLELGAVNQYWLHYRLLNDWGYTRLAKKEREESIE-- 71

Query: 195 QRHFMSQQMDELQVIVGF 212
           + H   + +D +  + GF
Sbjct: 72  EMHHADKLIDRIIFLEGF 89


>pdb|1B87|A Chain A, Crystal Structure Of An Aminoglycoside
          6'-N-Acetyltransferase
          Length = 181

 Score = 27.3 bits (59), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 17 QSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGW--HWLVL 69
          + YGDSS EE+  +    ++ V   ++ +  LVG  G + +  G+ GW  H LV+
Sbjct: 27 EEYGDSSAEEVEEMMNPERIAVAAVDQDE--LVGFIGAIPQ-YGITGWELHPLVV 78


>pdb|2A4N|A Chain A, Crystal Structure Of Aminoglycoside
          6'-N-Acetyltransferase Complexed With Coenzyme A
 pdb|2A4N|B Chain B, Crystal Structure Of Aminoglycoside
          6'-N-Acetyltransferase Complexed With Coenzyme A
          Length = 182

 Score = 27.3 bits (59), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 17 QSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGW--HWLVL 69
          + YGDSS EE+  +    ++ V   ++ +  LVG  G + +  G+ GW  H LV+
Sbjct: 27 EEYGDSSAEEVEEMMNPERIAVAAVDQDE--LVGFIGAIPQ-YGITGWELHPLVV 78


>pdb|1N71|A Chain A, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
          Type Ii In Complex With Coenzyme A
 pdb|1N71|B Chain B, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
          Type Ii In Complex With Coenzyme A
 pdb|1N71|C Chain C, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
          Type Ii In Complex With Coenzyme A
 pdb|1N71|D Chain D, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
          Type Ii In Complex With Coenzyme A
          Length = 180

 Score = 27.3 bits (59), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 17 QSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGW--HWLVL 69
          + YGDSS EE+  +    ++ V   ++ +  LVG  G + +  G+ GW  H LV+
Sbjct: 27 EEYGDSSAEEVEEMMNPERIAVAAVDQDE--LVGFIGAIPQ-YGITGWELHPLVV 78


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,880,694
Number of Sequences: 62578
Number of extensions: 207669
Number of successful extensions: 382
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 7
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)