BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027380
(224 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75446|SAP30_HUMAN Histone deacetylase complex subunit SAP30 OS=Homo sapiens GN=SAP30
PE=1 SV=1
Length = 220
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 151 ISTPGSMKIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIV 210
I TP ++DL +L++ L RY RHF L P ++ QL+++V HF S ++E +
Sbjct: 143 IDTP---EVDLYQLQVNTLRRYKRHFKLP-TRPGLNKAQLVEIVGCHFRSIPVNEKDTLT 198
Query: 211 GFVQAAK 217
F+ + K
Sbjct: 199 YFIYSVK 205
>sp|O88574|SAP30_MOUSE Histone deacetylase complex subunit SAP30 OS=Mus musculus GN=Sap30
PE=1 SV=1
Length = 220
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 151 ISTPGSMKIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIV 210
I TP ++DL +L++ L RY RHF L P ++ QL+++V HF S ++E +
Sbjct: 143 IDTP---EVDLYQLQVNTLRRYKRHFKL-PTRPGLNKAQLVEIVGCHFKSIPVNEKDTLT 198
Query: 211 GFVQAAK 217
F+ + +
Sbjct: 199 CFIYSVR 205
>sp|Q9HAJ7|SP30L_HUMAN Histone deacetylase complex subunit SAP30L OS=Homo sapiens
GN=SAP30L PE=1 SV=1
Length = 183
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 158 KIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAK 217
++DL +L++ L RY RH+ L P ++ QL + V RHF + ++E + + F+ K
Sbjct: 108 EVDLFQLQVNTLRRYKRHYKL-QTRPGFNKAQLAETVSRHFRNIPVNEKETLAYFIYMVK 166
>sp|Q5SQF8|SP30L_MOUSE Histone deacetylase complex subunit SAP30L OS=Mus musculus
GN=Sap30l PE=1 SV=1
Length = 182
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 158 KIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAK 217
++DL +L++ L RY RH+ L P ++ QL + V RHF + ++E + + F+ K
Sbjct: 107 EVDLFQLQVNTLRRYKRHYKL-QTRPGFNKAQLAETVSRHFRNIPVNEKETLAYFIYMVK 165
>sp|Q6NYV5|SP30L_DANRE Histone deacetylase complex subunit SAP30L OS=Danio rerio GN=sap30l
PE=2 SV=1
Length = 178
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 158 KIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAK 217
++DL +L++ L RY RH+ + P ++ QL + V RHF + ++E + + F+ K
Sbjct: 103 EVDLFQLQVNTLRRYKRHYK-IQTRPGLNKAQLAETVSRHFRNIPVNEKETLTYFIYMVK 161
Query: 218 RLKT 221
K+
Sbjct: 162 SSKS 165
>sp|Q8K0P3|K1609_MOUSE TLD domain-containing protein KIAA1609 OS=Mus musculus GN=Kiaa1609
PE=2 SV=1
Length = 455
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 1 MLETMESSVNGGFSQL------QSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGV 54
+LE + V GGF+ Q GD+ S+ PR + TG N L Q
Sbjct: 293 VLEDRDGYVFGGFASCSWEVKPQFQGDNRCFLFSIAPRMATHLHTGYNNHFMYLNYGQQT 352
Query: 55 VKKAVGLGGWH-----WLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVP-WNISD 108
+ +G+GG H W+ G + A + +P + ++D L FD + W + +
Sbjct: 353 MPNGLGMGGQHHYFGLWVAADFGKGHSKAKPACTTYNSPQLSAQEDFL-FDKMEVWGLGN 411
Query: 109 LASDDTQKSHRSKLRTHKSTGSSHKTTSRS 138
L + K+ +S L ++ S + + R+
Sbjct: 412 LLEEYEGKNKKSVLDSNPEARSLLEISGRA 441
>sp|Q8NAA5|F211A_HUMAN Leucine-rich repeat-containing protein FAM211A OS=Homo sapiens
GN=FAM211A PE=2 SV=2
Length = 344
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 27 LSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEV 75
LS LPR T + + GN T++VL L ++K W+ L N +++
Sbjct: 226 LSTLPRLTTLALNGNRLTRAVLRDLTDILKDPSKFPNVTWIDLGNNVDI 274
>sp|Q6DBR9|KXDL1_DANRE KxDL motif-containing protein 1 OS=Danio rerio GN=kxd1 PE=2 SV=1
Length = 182
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 89 TGNEEDDDLEFDNVPWNISDLASDDTQKSHRSKLRTHKSTGSSHKTTSRSLSCDSHSQSK 148
+ N EDDD EFD +P +++ + + T + ++ +S +S S ++SC S S+
Sbjct: 103 SSNLEDDDDEFDPIPASVATITTTATSE------QSTESCDTSPDVISPTISCCSEDPSQ 156
Query: 149 GSISTPGS 156
TP S
Sbjct: 157 EHTDTPTS 164
>sp|Q1H501|RLMF_METFK Ribosomal RNA large subunit methyltransferase F OS=Methylobacillus
flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rlmF
PE=3 SV=1
Length = 336
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 38 VTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDL 97
G + L QG+V GL G IE++LQRN +V E DL
Sbjct: 138 FVGTDINVEALENAQGIVAANPGLAG--------AIELRLQRNVGAVFSGVVQESERFDL 189
Query: 98 EFDNVPWNISDLAS 111
N P++ S A+
Sbjct: 190 TMCNPPFHASQAAA 203
>sp|Q3LAC4|PREX2_MOUSE Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 2
protein OS=Mus musculus GN=Prex2 PE=2 SV=2
Length = 1598
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 52 QGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFDNVPWNISDL-- 109
+G V A GL ++ NGI V + +A + + ++ D++ W L
Sbjct: 696 RGTVAAAAGLHPGQCIIKVNGINVSKETHASVIAHVTACRKYKRPMKQDSIQWVYDSLES 755
Query: 110 ASDDTQKSH 118
A +D QKSH
Sbjct: 756 AQEDIQKSH 764
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,338,803
Number of Sequences: 539616
Number of extensions: 3164236
Number of successful extensions: 7664
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 7644
Number of HSP's gapped (non-prelim): 35
length of query: 224
length of database: 191,569,459
effective HSP length: 113
effective length of query: 111
effective length of database: 130,592,851
effective search space: 14495806461
effective search space used: 14495806461
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)