Query 027380
Match_columns 224
No_of_seqs 84 out of 86
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 15:00:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ld7_A Histone deacetylase com 99.9 4.1E-24 1.4E-28 165.4 9.3 68 154-222 17-84 (94)
2 2do1_A Nuclear protein HCC-1; 92.7 0.18 6.3E-06 35.2 4.9 41 158-201 7-47 (55)
3 1zrj_A E1B-55KDA-associated pr 89.1 0.8 2.7E-05 31.4 5.2 40 158-200 7-46 (50)
4 2rnn_A E3 SUMO-protein ligase 88.8 0.74 2.5E-05 36.6 5.5 59 158-219 34-98 (114)
5 1jjr_A KU70, thyroid autoantig 87.7 0.51 1.8E-05 38.9 4.1 48 158-208 58-106 (151)
6 1h1j_S THO1 protein; SAP domai 87.6 0.79 2.7E-05 31.5 4.4 40 159-201 3-42 (51)
7 1jjr_A KU70, thyroid autoantig 79.2 0.39 1.3E-05 39.6 0.0 38 159-199 113-150 (151)
8 2kvu_A MKL/myocardin-like prot 78.9 3.5 0.00012 30.6 5.0 40 158-200 23-62 (75)
9 1y02_A CARP2, FYVE-ring finger 59.7 8.7 0.0003 30.2 3.8 40 158-198 73-112 (120)
10 1ah9_A IF1, initiation factor 59.6 7.4 0.00025 27.3 3.1 37 48-85 5-47 (71)
11 2kq8_A Cell WALL hydrolase; GF 58.0 11 0.00038 25.8 3.7 57 12-88 10-66 (70)
12 1jey_A KU70; double-strand DNA 56.7 2.3 7.8E-05 40.5 0.0 37 160-199 572-608 (609)
13 3i4o_A Translation initiation 49.0 9.9 0.00034 28.0 2.4 38 47-85 12-55 (79)
14 2oqk_A Putative translation in 36.5 21 0.00072 27.6 2.6 23 52-75 35-57 (117)
15 1hr0_W Translation initiation 32.5 9.3 0.00032 26.9 -0.0 27 48-75 6-32 (71)
16 1wg7_A Dedicator of cytokinesi 32.4 20 0.00068 26.6 1.8 40 21-72 2-50 (150)
17 1g5t_A COB(I)alamin adenosyltr 31.7 18 0.00062 30.2 1.6 17 27-43 147-163 (196)
18 2cof_A Protein KIAA1914; PH do 24.7 41 0.0014 23.5 2.3 21 51-72 10-32 (107)
19 1xre_A SODA-2, superoxide dism 23.9 37 0.0013 29.0 2.2 11 62-72 139-149 (217)
20 2rq6_A ATP synthase epsilon ch 22.2 1E+02 0.0034 24.1 4.3 50 24-85 28-77 (138)
21 2rcv_A Superoxide dismutase [M 22.0 43 0.0015 28.2 2.2 11 62-72 129-139 (202)
22 3rcp_A Pleckstrin homology dom 21.2 54 0.0019 22.4 2.3 20 60-87 11-32 (103)
23 2ptm_A Hyperpolarization-activ 21.0 63 0.0021 24.5 2.8 45 164-212 12-56 (198)
24 4eqy_A Acyl-[acyl-carrier-prot 20.9 1.1E+02 0.0037 25.6 4.4 52 165-217 225-278 (283)
25 1btn_A Beta-spectrin; signal t 20.3 62 0.0021 22.0 2.4 14 59-72 18-33 (106)
26 1my6_A Iron (III) superoxide d 20.1 50 0.0017 27.7 2.2 11 62-72 126-136 (199)
No 1
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=99.90 E-value=4.1e-24 Score=165.42 Aligned_cols=68 Identities=29% Similarity=0.507 Sum_probs=64.7
Q ss_pred CCCccccccccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhccccCChHHHHHHHHHHHhhcccc
Q 027380 154 PGSMKIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGFVQAAKRLKTV 222 (224)
Q Consensus 154 ~~~p~VDL~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~sq~VdE~eVI~~Fi~avKr~Kt~ 222 (224)
...|+|||++|+++|||||++||+| .+.|+.+|+||+.+|.+||++|+|+|.|||++|||+||+.++-
T Consensus 17 ~~~p~vdf~kL~~~tLrrY~r~y~L-~~~~~~sK~qLa~aV~kHF~s~~VdE~evI~~Fly~VK~~~~k 84 (94)
T 2ld7_A 17 IDTPEVDLYQLQVNTLRRYKRHFKL-PTRPGLNKAQLVEIVGCHFKSIPVNEKDTLTCFIYSVRNDKNK 84 (94)
T ss_dssp SCCCCCCCSSSCHHHHHHHHHHTTC-CCCSSCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCcCHHHCCHHHHHHHHHHhCC-CCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCcc
Confidence 3478899999999999999999999 8999999999999999999999999999999999999999864
No 2
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=92.71 E-value=0.18 Score=35.23 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=36.6
Q ss_pred cccccccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhccc
Q 027380 158 KIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQ 201 (224)
Q Consensus 158 ~VDL~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~sq 201 (224)
.+|+.+|.++-||.+.+.++| .....|++|++-+..||...
T Consensus 7 ~~~l~klkV~eLK~~L~~rGL---~~~G~KaeLieRL~~~l~~~ 47 (55)
T 2do1_A 7 GVELHKLKLAELKQECLARGL---ETKGIKQDLIHRLQAYLEEH 47 (55)
T ss_dssp CCCTTTSCHHHHHHHHHHHTC---CCCSCHHHHHHHHHHHHHHT
T ss_pred ccCHHHCcHHHHHHHHHHcCC---CCCCcHHHHHHHHHHHHhcC
Confidence 589999999999999999999 34568999999999999765
No 3
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=89.10 E-value=0.8 Score=31.41 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=35.4
Q ss_pred cccccccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhcc
Q 027380 158 KIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMS 200 (224)
Q Consensus 158 ~VDL~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~s 200 (224)
.+|+++|.+.-||...+.++| .....|++|++-++.|+..
T Consensus 7 ~~~~~klkV~eLK~eLk~RgL---~~~G~Ka~Li~RL~~~~~~ 46 (50)
T 1zrj_A 7 GMDVRRLKVNELREELQRRGL---DTRGLKAELAERLQAALSG 46 (50)
T ss_dssp CCCGGGSCHHHHHHHHHHTTC---CCCSCHHHHHHHHHHHHCC
T ss_pred cCCHHHCcHHHHHHHHHHcCC---CCCCcHHHHHHHHHHHHhc
Confidence 589999999999999999999 4567899999999988753
No 4
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=88.79 E-value=0.74 Score=36.60 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=46.7
Q ss_pred cccccccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhcccc----CC--hHHHHHHHHHHHhhc
Q 027380 158 KIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQ----MD--ELQVIVGFVQAAKRL 219 (224)
Q Consensus 158 ~VDL~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~sq~----Vd--E~eVI~~Fi~avKr~ 219 (224)
...+.+|.++-|+.++|.+.| .....|++|++-|..||.... .| -...|..+|++++..
T Consensus 34 ~~~l~kLtVaELK~~cr~~GL---~~sGkKaeLi~RI~~yl~~~~~~g~~D~~rl~ai~~lI~~~~~g 98 (114)
T 2rnn_A 34 ITLMELLKVSELKDICRSVSF---PVSGRKAVLQDLIRNFLQNALVVGKSDPYRVQAVKFLIERIRKN 98 (114)
T ss_dssp HHHHTTCCHHHHHHHHHHTTC---CTTSCHHHHHHHHHHHHHHTTCTTCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHcCC---CcCCcHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHhcC
Confidence 357999999999999999999 456899999999999997533 23 235666788887653
No 5
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=87.68 E-value=0.51 Score=38.89 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=35.7
Q ss_pred cccccccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhcc-ccCChHHH
Q 027380 158 KIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMS-QQMDELQV 208 (224)
Q Consensus 158 ~VDL~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~s-q~VdE~eV 208 (224)
...|.+|.++-||-|.+.++| .....|++|++.|..||.. ..+++.++
T Consensus 58 ~g~L~kltV~eLK~~l~~~gL---~~~GkKadLI~Ri~~~l~~Kve~s~eei 106 (151)
T 1jjr_A 58 KGTLGKFTVPMLKEACRAYGL---KSGLKKQELLEALTKHFQDKVEYSEEEL 106 (151)
T ss_dssp HTCTTSSCHHHHHHHHHHHTC---CCCSSSHHHHHHHHHTTCC---------
T ss_pred cCcHHhccHHHHHHHHHHcCC---CCcccHHHHHHHHHHHHhhhccccHHHH
Confidence 358999999999999999988 5678899999999999964 44555554
No 6
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=87.59 E-value=0.79 Score=31.48 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=35.4
Q ss_pred ccccccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhccc
Q 027380 159 IDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQ 201 (224)
Q Consensus 159 VDL~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~sq 201 (224)
.|+++|.+.-||...+.++| .....|++|++-+..|+..-
T Consensus 3 ~~~~kltV~eLK~~Lk~RGL---~~~G~KadLieRL~~~~~~~ 42 (51)
T 1h1j_S 3 ADYSSLTVVQLKDLLTKRNL---SVGGLKNELVQRLIKDDEES 42 (51)
T ss_dssp CSGGGCCHHHHHHHHHHTTC---CCCSSHHHHHHHHHHHHHHS
T ss_pred chHHHCcHHHHHHHHHHcCC---CCCCcHHHHHHHHHHHHHhc
Confidence 58999999999999999999 44578999999999998653
No 7
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=79.20 E-value=0.39 Score=39.62 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=0.0
Q ss_pred ccccccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhc
Q 027380 159 IDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFM 199 (224)
Q Consensus 159 VDL~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~ 199 (224)
-.|.+|.++.||-|.+.++| ..+..|++|++.|..||.
T Consensus 113 g~l~klTV~~Lk~~l~~~gl---~~~GkKaeLieRi~~~~~ 150 (151)
T 1jjr_A 113 GTLGKFTVPMLKEACRAYGL---KSGLKKQELLEALTKHFQ 150 (151)
T ss_dssp -----------------------------------------
T ss_pred CccccccHHHHHHHHHHcCC---CCCCcHHHHHHHHHHHhc
Confidence 47889999999999999998 566889999999999985
No 8
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=78.85 E-value=3.5 Score=30.63 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=35.3
Q ss_pred cccccccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhcc
Q 027380 158 KIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMS 200 (224)
Q Consensus 158 ~VDL~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~s 200 (224)
..++.+|.+.-||.+.+.++| ....+|++|++-++.++..
T Consensus 23 ~~~l~klkVaeLK~eLk~RGL---~~sG~KaeLIeRL~~~~~~ 62 (75)
T 2kvu_A 23 PANLDDMKVAELKQELKLRSL---PVSGTKTELIERLRAYQDQ 62 (75)
T ss_dssp CTTTTTSCHHHHHHHHHHTTC---CCCSCHHHHHHHHHHHHHT
T ss_pred hHHHHHCcHHHHHHHHHHcCC---CCCCCHHHHHHHHHHHHHc
Confidence 469999999999999999999 4557899999999999764
No 9
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=59.66 E-value=8.7 Score=30.17 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=34.9
Q ss_pred cccccccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhh
Q 027380 158 KIDLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHF 198 (224)
Q Consensus 158 ~VDL~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF 198 (224)
+-.|-+|.+..|+.|-.-+++ .+.----|+||++.|..|=
T Consensus 73 ~~~l~~lkvkdL~~yL~~~~I-~~~~c~EKedLv~lvl~~~ 112 (120)
T 1y02_A 73 REELMKMKVKDLRDYLSLHDI-STEMCREKEELVLLVLGQQ 112 (120)
T ss_dssp HHHHHTSCHHHHHHHHHHTTC-CCTTCCSHHHHHHHHHHTC
T ss_pred HHHHhcccHHHHHHHHHhCCC-CcccceeHHHHHHHHHhcC
Confidence 457888999999999999999 5556779999999999986
No 10
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=59.61 E-value=7.4 Score=27.29 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=26.7
Q ss_pred EeeccceeeeccccCceEEEEeecCcEE------EEeeceeeee
Q 027380 48 LVGLQGVVKKAVGLGGWHWLVLTNGIEV------KLQRNALSVI 85 (224)
Q Consensus 48 LVGL~GVVkKAVGLGGWHWLvL~NG~EV------kLQRNALsvi 85 (224)
++=+.|+|-|+.| +||..+.+.||..+ |+..|.+..+
T Consensus 5 ~~~~~G~Vi~~lg-~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~ 47 (71)
T 1ah9_A 5 NIEMQGTVLETLP-NTMFRVELENGHVVTAHISGKMRKNYIRIL 47 (71)
T ss_dssp CEECCEEEEEECS-SSEEEEEETTSCEEEEEECSSGGGTTCCCC
T ss_pred eeEEEEEEEEEeC-CcEEEEEECCCCEEEEEEcceEeccCccCC
Confidence 4457899999877 48999999999765 2334555554
No 11
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=57.96 E-value=11 Score=25.83 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=44.5
Q ss_pred CccccccCCCCccccccccCcceEEEEecCCccceeEeeccceeeeccccCceEEEEeecCcEEEEeeceeeeecCC
Q 027380 12 GFSQLQSYGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAP 88 (224)
Q Consensus 12 ~~~~~~~~~dsg~eelsvLPrhTkV~VTGNnRTKsvLVGL~GVVkKAVGLGGWHWLvL~NG~EVkLQRNALsviE~P 88 (224)
...-++++-..+-+-+..||+.++|.|.+.. |||-.+.+ ||.+==+....|..+|.-
T Consensus 10 ~~lnvRsgP~~~~~ii~~l~~G~~v~v~~~~-------------------~~W~~V~~-~G~~GwV~~~~l~~~~~~ 66 (70)
T 2kq8_A 10 SALNVRSGEGTNYRIIGALPQGQKVQVISEN-------------------SGWSKINY-NGQTGYIGTRYLSKLEHH 66 (70)
T ss_dssp SSSCSSSSSSSCTTSCCCCCSSSSCCCCEEE-------------------TTEEEEEE-TTEEEEEETTSCSCCCSC
T ss_pred CCEEEEcCCCCCCceEEEECCCCEEEEEEec-------------------CCEEEEEE-CCEEEEEEhHHccchhhc
Confidence 4445666655556788999999999887731 68999988 999999999999888764
No 12
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=56.73 E-value=2.3 Score=40.52 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=0.0
Q ss_pred cccccchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhc
Q 027380 160 DLSKLEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFM 199 (224)
Q Consensus 160 DL~KLe~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~ 199 (224)
.|.+|.++-||.|.+.++| .....|++|++.|..||.
T Consensus 572 ~l~~~tv~~Lk~~l~~~~~---~~~~kK~~li~~i~~~~~ 608 (609)
T 1jey_A 572 TLGKFTVPMLKEACRAYGL---KSGLKKQELLEALTKHFQ 608 (609)
T ss_dssp ----------------------------------------
T ss_pred CchhccHHHHHHHHHHcCC---CCCCcHHHHHHHHHHHhc
Confidence 4778999999999999987 467889999999999984
No 13
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=49.00 E-value=9.9 Score=28.01 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=28.8
Q ss_pred eEeeccceeeeccccCceEEEEeecCcEEE------Eeeceeeee
Q 027380 47 VLVGLQGVVKKAVGLGGWHWLVLTNGIEVK------LQRNALSVI 85 (224)
Q Consensus 47 vLVGL~GVVkKAVGLGGWHWLvL~NG~EVk------LQRNALsvi 85 (224)
-++=+.|+|.|++| +||=.+.|.||.++. +.+|-+.++
T Consensus 12 ~~ie~~G~Vik~l~-n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il 55 (79)
T 3i4o_A 12 GAIEVEGRVVEPLP-NAMFRIELENGHKVLAHISGKMRQHYIRIL 55 (79)
T ss_dssp CCSEEEEEEEEEET-TTEEEEEETTSCEEEEEECHHHHHTTCCCC
T ss_pred ceEEEEEEEEEEcC-CCEEEEEeCCCCEEEEEeCcceecCCccCC
Confidence 46778999999988 789999999996652 344555544
No 14
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=36.52 E-value=21 Score=27.59 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=19.8
Q ss_pred cceeeeccccCceEEEEeecCcEE
Q 027380 52 QGVVKKAVGLGGWHWLVLTNGIEV 75 (224)
Q Consensus 52 ~GVVkKAVGLGGWHWLvL~NG~EV 75 (224)
.|+|-++.| +||..+.+.||..+
T Consensus 35 ~G~Vi~~lg-n~~y~V~~~dG~~~ 57 (117)
T 2oqk_A 35 YGQVQRMLG-NGRLDAYCFDGQKR 57 (117)
T ss_dssp EEEEEEEEE-TTEEEEEETTSCEE
T ss_pred EEEEEEEcC-CCEEEEEeCCCCEE
Confidence 699999988 57999999999765
No 15
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=32.50 E-value=9.3 Score=26.88 Aligned_cols=27 Identities=26% Similarity=0.371 Sum_probs=21.6
Q ss_pred EeeccceeeeccccCceEEEEeecCcEE
Q 027380 48 LVGLQGVVKKAVGLGGWHWLVLTNGIEV 75 (224)
Q Consensus 48 LVGL~GVVkKAVGLGGWHWLvL~NG~EV 75 (224)
++=+.|+|-|+.| +||..+.+.||..+
T Consensus 6 ~~~~~G~Vi~~lg-~~~y~V~~~~g~~~ 32 (71)
T 1hr0_W 6 TIRTEGVVTEALP-NATFRVKLDSGPEI 32 (71)
T ss_dssp CCCCEEECCCCCT-TTBCCCEESSSCBC
T ss_pred ceEEEEEEEEEeC-CcEEEEEECCCCEE
Confidence 4557899999877 47999999999654
No 16
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=32.43 E-value=20 Score=26.63 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=24.0
Q ss_pred CCccccccccCcceEEEEecCCccceeEeeccceeeec-------cccCceE--EEEeecC
Q 027380 21 DSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKA-------VGLGGWH--WLVLTNG 72 (224)
Q Consensus 21 dsg~eelsvLPrhTkV~VTGNnRTKsvLVGL~GVVkKA-------VGLGGWH--WLvL~NG 72 (224)
.|.||+++.+|.-.. . |=.+|-..|- -++.+|+ |.||.++
T Consensus 2 ss~d~~~~s~~s~~~---------~---~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~ 50 (150)
T 1wg7_A 2 SSGSSGAASLGSQKG---------G---ITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQL 50 (150)
T ss_dssp CCCSSSCCCCCBCSC---------C---CCCEEEEEECCCCSSHHHHHSSCEEEEEEEEEC
T ss_pred CcccccccccCCCCC---------C---eeEEEEEEEecCCccccccccCeeEEEEEEecC
Confidence 466777777763211 1 1245666554 3566885 9999986
No 17
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=31.70 E-value=18 Score=30.21 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=14.2
Q ss_pred ccccCcceEEEEecCCc
Q 027380 27 LSVLPRHTKVVVTGNNR 43 (224)
Q Consensus 27 lsvLPrhTkV~VTGNnR 43 (224)
|+--|.++.||+|||+=
T Consensus 147 l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 147 LNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHTSCTTCEEEEECSSC
T ss_pred HHhCcCCCEEEEECCCC
Confidence 44569999999999984
No 18
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=24.71 E-value=41 Score=23.54 Aligned_cols=21 Identities=10% Similarity=0.346 Sum_probs=16.6
Q ss_pred ccceeeeccccCceE--EEEeecC
Q 027380 51 LQGVVKKAVGLGGWH--WLVLTNG 72 (224)
Q Consensus 51 L~GVVkKAVGLGGWH--WLvL~NG 72 (224)
++|-..|- +..+|+ |.||+++
T Consensus 10 ~~G~L~K~-~~k~Wk~RwfvL~~~ 32 (107)
T 2cof_A 10 TSSYLNVL-VNSQWKSRWCSVRDN 32 (107)
T ss_dssp TCCEEEEE-ETTEEEEEEEEECSS
T ss_pred EeEEEEEe-cCCCcceEEEEEECC
Confidence 56777776 888995 8999876
No 19
>1xre_A SODA-2, superoxide dismutase; spine, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=23.90 E-value=37 Score=29.04 Aligned_cols=11 Identities=45% Similarity=1.057 Sum_probs=9.1
Q ss_pred CceEEEEeecC
Q 027380 62 GGWHWLVLTNG 72 (224)
Q Consensus 62 GGWHWLvL~NG 72 (224)
.||=|||..+|
T Consensus 139 SGW~WLv~~~~ 149 (217)
T 1xre_A 139 SGYGWLVLDGE 149 (217)
T ss_dssp SEEEEEEEETT
T ss_pred CeEEEEEEECC
Confidence 48999999855
No 20
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A
Probab=22.18 E-value=1e+02 Score=24.11 Aligned_cols=50 Identities=20% Similarity=0.502 Sum_probs=35.6
Q ss_pred cccccccCcceEEEEecCCccceeEeeccceeeeccccCceEEEEeecCcEEEEeeceeeee
Q 027380 24 EEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVI 85 (224)
Q Consensus 24 ~eelsvLPrhTkV~VTGNnRTKsvLVGL~GVVkKAVGLGGWHWLvL~NG~EVkLQRNALsvi 85 (224)
+=++-+||.|+-.+-+ |. -|+|+=-.+ |+|+++.+..|. +.++-|-.+|+
T Consensus 28 ~Ge~GILp~H~p~it~--------L~--~G~v~i~~~-~~~~~~~v~gGf-~ev~~~~vtIl 77 (138)
T 2rq6_A 28 TGQLGILSNHAPLLTA--------LE--TGVMRVRQD-REWVAIALMGGF-AEVENNEVTIL 77 (138)
T ss_dssp TSCEEEESSCCSEEEE--------EC--SEEEEEESS-SCEEEEEECSEE-EEECSSCEEEE
T ss_pred cCCeEEcCCCcceEeE--------ec--cEEEEEEEC-CeEEEEEEcCcE-EEEECCEEEEE
Confidence 4478899999987743 21 356553333 789999887774 56678999988
No 21
>2rcv_A Superoxide dismutase [MN]; bacillus subtilis,superoxide dismutase, manganese, metal- binding, oxidoreductase, phosphorylation; 1.60A {Bacillus subtilis} PDB: 1xuq_A 1jr9_A
Probab=22.04 E-value=43 Score=28.16 Aligned_cols=11 Identities=64% Similarity=1.655 Sum_probs=8.4
Q ss_pred CceEEEEeecC
Q 027380 62 GGWHWLVLTNG 72 (224)
Q Consensus 62 GGWHWLvL~NG 72 (224)
.||=|||..+|
T Consensus 129 SGW~WLv~~~g 139 (202)
T 2rcv_A 129 SGWAWLVVNNG 139 (202)
T ss_dssp SEEEEEEEETT
T ss_pred CeEEEEEEECC
Confidence 48999999543
No 22
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=21.22 E-value=54 Score=22.41 Aligned_cols=20 Identities=45% Similarity=0.934 Sum_probs=13.9
Q ss_pred ccCceE--EEEeecCcEEEEeeceeeeecC
Q 027380 60 GLGGWH--WLVLTNGIEVKLQRNALSVIEA 87 (224)
Q Consensus 60 GLGGWH--WLvL~NG~EVkLQRNALsviE~ 87 (224)
.+.+|+ |.||++ +.|+--..
T Consensus 11 ~~k~Wk~R~fvL~~--------~~L~Yy~~ 32 (103)
T 3rcp_A 11 YLTGWQPRWFVLDN--------GILSYYDS 32 (103)
T ss_dssp TTTCEEEEEEEEET--------TEEEEESS
T ss_pred CCCCeeceEEEEEC--------CEEEEEec
Confidence 357897 999985 45666643
No 23
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=20.97 E-value=63 Score=24.52 Aligned_cols=45 Identities=16% Similarity=0.306 Sum_probs=33.0
Q ss_pred cchhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhccccCChHHHHHHH
Q 027380 164 LEMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMDELQVIVGF 212 (224)
Q Consensus 164 Le~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~sq~VdE~eVI~~F 212 (224)
-.+..+..|.++.+| |..-+.++.+-..-+|.+...+|.++|..+
T Consensus 12 ~~~~~i~~~m~~~~i----~~~l~~rv~~y~~~~~~~~~~~e~~il~~l 56 (198)
T 2ptm_A 12 EKLKQVEEYMQYRKL----PSHLRNKILDYYEYRYRGKMFDERHIFREV 56 (198)
T ss_dssp HHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHTTCCCCSHHHHHHS
T ss_pred HHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHcccCCCHHHHHHHc
Confidence 456788899999998 335556666666666667778898888754
No 24
>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}
Probab=20.85 E-value=1.1e+02 Score=25.61 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=34.0
Q ss_pred chhHHHHHHHhcccccCCCCCCHHHHHHHHHhhhccccCC--hHHHHHHHHHHHh
Q 027380 165 EMGALWRYWRHFNLVDAIPNPSREQLIDVVQRHFMSQQMD--ELQVIVGFVQAAK 217 (224)
Q Consensus 165 e~~TLrRYkkhfkL~~~~P~~sKeQLv~aV~rHF~sq~Vd--E~eVI~~Fi~avK 217 (224)
....+...++.|++ -.+.+.+-+|.++.+.+.|...+-+ |.+-|..|+..-+
T Consensus 225 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 278 (283)
T 4eqy_A 225 SPDAISALRSAYRI-LYKNSLSLEEAKVQLSELAQAGGDGDAAVKALVDFVESSQ 278 (283)
T ss_dssp CHHHHHHHHHHHHH-HHTSCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHH-HHhCCCCHHHHHHHHHHhcccCCchHHHHHHHHHHHhhcc
Confidence 33444444445544 2245667788889998888666544 8889999996443
No 25
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=20.31 E-value=62 Score=21.98 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=10.5
Q ss_pred cccCceE--EEEeecC
Q 027380 59 VGLGGWH--WLVLTNG 72 (224)
Q Consensus 59 VGLGGWH--WLvL~NG 72 (224)
-+..+|+ |.||+++
T Consensus 18 ~~~~~Wk~rwfvL~~~ 33 (106)
T 1btn_A 18 ASSRSWHNVYCVINNQ 33 (106)
T ss_dssp CSCCCCEEEEEEEETT
T ss_pred CCCCChhEEEEEEECC
Confidence 3567886 8999865
No 26
>1my6_A Iron (III) superoxide dismutase; iron speroxide dismutase, thermophIle, reactive oxygen species, cyanobacteria, SOD, fesod; 1.60A {Thermosynechococcus elongatus} SCOP: a.2.11.1 d.44.1.1
Probab=20.08 E-value=50 Score=27.74 Aligned_cols=11 Identities=64% Similarity=1.579 Sum_probs=8.9
Q ss_pred CceEEEEeecC
Q 027380 62 GGWHWLVLTNG 72 (224)
Q Consensus 62 GGWHWLvL~NG 72 (224)
.||=|||..+|
T Consensus 126 SGW~WLv~~~g 136 (199)
T 1my6_A 126 SGWAWLVLEAG 136 (199)
T ss_dssp SEEEEEEEETT
T ss_pred CeEEEEEEECC
Confidence 48999999844
Done!