BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027381
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 170 bits (430), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 95/203 (46%), Positives = 128/203 (63%), Gaps = 3/203 (1%)
Query: 23 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTANRLGVDETD 81
TDP LQD CVA D K V VNG CK P +DF FS L K GNT+ G T+
Sbjct: 1 TDPDPLQDFCVADLDGK-AVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTE 58
Query: 82 ANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTL 141
+V + PG NTLG+S R+D+AP G PPHIHPRA+EI +V++G L VG + S N L
Sbjct: 59 LDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKL 118
Query: 142 IAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDF 201
++V+ G+ FV P+GL+HFQFN+GKT A + NSQ PG V + T+FG++P I
Sbjct: 119 YSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPV 178
Query: 202 LGKAFQLDPKIVKDLQNKFINGN 224
L KA +++ +V+ L++KF G+
Sbjct: 179 LTKALRVEAGVVELLKSKFAGGS 201
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 169 bits (429), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 128/203 (63%), Gaps = 3/203 (1%)
Query: 23 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTANRLGVDETD 81
+DP LQD CVA D K V VNG CK P +DF FS L K GNT+ G T+
Sbjct: 1 SDPDPLQDFCVADLDGK-AVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTE 58
Query: 82 ANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTL 141
+V + PG NTLG+S R+D+AP G PPHIHPRA+EI +V++G L VG + S N L
Sbjct: 59 LDVAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKL 118
Query: 142 IAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDF 201
++V+ G+ FV P+GL+HFQFN+GKT A + NSQ PG V + T+FG++P I
Sbjct: 119 YSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPV 178
Query: 202 LGKAFQLDPKIVKDLQNKFINGN 224
L KA +++ +V+ L++KF G+
Sbjct: 179 LTKALRVEAGVVELLKSKFAGGS 201
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 128/203 (63%), Gaps = 3/203 (1%)
Query: 23 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTANRLGVDETD 81
+DP LQD CVA D K V VNG CK P +DF FS L K GNT+ G T+
Sbjct: 1 SDPDPLQDFCVADLDGK-AVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTE 58
Query: 82 ANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTL 141
+V + PG NTLG+S R+D+AP G PPHIHPRA+EI +V++G L VG + S N L
Sbjct: 59 LDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKL 118
Query: 142 IAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDF 201
++V+ G+ FV P+GL+HFQFN+GKT A + NSQ PG V + T+FG++P I
Sbjct: 119 YSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPV 178
Query: 202 LGKAFQLDPKIVKDLQNKFINGN 224
L KA +++ +V+ L++KF G+
Sbjct: 179 LTKALRVEAGVVELLKSKFAGGS 201
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 31/146 (21%)
Query: 82 ANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTL 141
A+ ++ PG + ++ I P R H HP A E VL+G + + S+
Sbjct: 223 ASAKEFPG--SFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASE--GKAS 278
Query: 142 IAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIA-----------DTV 190
+++ L +GDV P+G H N +SQ P ++ + T
Sbjct: 279 VSR-LQQGDVGYVPKGYGHAIRN------------SSQKPLDIVVVFNDGDYQSIDLSTW 325
Query: 191 FGANPSINPDFLGKAFQLDPKIVKDL 216
+NPS LG FQ+ P++ K L
Sbjct: 326 LASNPS---SVLGNTFQISPELTKKL 348
>pdb|3D82|A Chain A, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|B Chain B, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|C Chain C, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|D Chain D, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|E Chain E, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
Length = 102
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 106 GQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIH 160
G+ H H E+F+V EGTL + F DQ N TL A G+ +V P+G+ H
Sbjct: 40 GEFVWHEHADTDEVFIVXEGTLQIAF--RDQ-NITLQA-----GEXYVIPKGVEH 86
>pdb|3HT1|A Chain A, 1.2a Structure Of The Polyketide Cyclase Remf From
Streptomyces Resistomycificus
Length = 145
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 18/96 (18%)
Query: 67 KPG--NTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLE 124
+PG T +R +D D G + ++ F + +P G PPH H EI+ VLE
Sbjct: 18 EPGAKETTHRKLIDTPD-------GADRFVLTEFEV--SPNGSTPPHFHEWEHEIY-VLE 67
Query: 125 GTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIH 160
G++ G V DQ + G+ P+G H
Sbjct: 68 GSM--GLVLPDQGRTEEVG----PGEAIFIPRGEPH 97
>pdb|3HT2|A Chain A, Zink Containing Polyketide Cyclase Remf From Streptomyces
Resistomycificus
pdb|3HT2|C Chain C, Zink Containing Polyketide Cyclase Remf From Streptomyces
Resistomycificus
Length = 145
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 67 KPG--NTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLE 124
+PG T +R +D D G + ++ F + +P G PPH H EI+ VLE
Sbjct: 18 EPGAKETTHRKLIDTPD-------GADRFVLTEFEV--SPNGSTPPHFHEWEHEIY-VLE 67
Query: 125 GTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIH 160
G+ G V DQ + G+ P+G H
Sbjct: 68 GSX--GLVLPDQGRTEEVG----PGEAIFIPRGEPH 97
>pdb|3SQG|A Chain A, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
pdb|3SQG|D Chain D, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
pdb|3SQG|G Chain G, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
Length = 579
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 70/191 (36%), Gaps = 28/191 (14%)
Query: 44 VNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDET----DANVEQIPGLN-TLGISAF 98
++ KF + P+ E + + G+ + G R + E D+ V P N G+
Sbjct: 14 MSDKFAEKPESTATEFYTYGGIAQKGGMRKREFIAEASKIVDSRVNSTPAYNPDAGM--- 70
Query: 99 RIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKV---LNKGDVFVFP 155
P GQR ++ P +++ + V +NN + + + +G V
Sbjct: 71 -----PQGQR--YLMP-----YMMNHTDIMVNADDLHWINNAAMQQAWDDMKRGIVLGLD 118
Query: 156 QGLIHFQFNIGK-----TNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDP 210
+ +GK T + LN PG I + + P + D K F D
Sbjct: 119 DAHGLLEARLGKEVTPDTISNYMEVLNHALPGGAVIQEHMVETKPMLVNDSYAKIFSGDD 178
Query: 211 KIVKDLQNKFI 221
+V + +FI
Sbjct: 179 DLVDSVDRRFI 189
>pdb|1MSK|A Chain A, Methionine Synthase (Activation Domain)
Length = 331
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 55 ARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHP 114
AR DF F A+RLGV E +A++E + N + + F + ++ G+ P +
Sbjct: 13 ARDNDFAFDWQAYTPPVAHRLGVQEVEASIETL--RNYIDWTPFFMTWSLAGKYPRILE- 69
Query: 115 RASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLN-KGDVFVFPQGLI 159
E+ V L+ +D L+ K LN +G V +FP +
Sbjct: 70 --DEVVGVEAQRLFKD--ANDMLDKLSAEKTLNPRGVVGLFPANRV 111
>pdb|4DIQ|A Chain A, Crystal Structure Of Human No66
pdb|4DIQ|B Chain B, Crystal Structure Of Human No66
Length = 489
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 133 TSDQLNNTLIAKVLNKGDVFVFPQGLIH 160
+ D L ++ VL GD+ FP+G IH
Sbjct: 219 SQDDLGEPVLQTVLEPGDLLYFPRGFIH 246
>pdb|4E4H|A Chain A, Crystal Structure Of Histone Demethylase No66
pdb|4E4H|B Chain B, Crystal Structure Of Histone Demethylase No66
pdb|4E4H|C Chain C, Crystal Structure Of Histone Demethylase No66
pdb|4E4H|D Chain D, Crystal Structure Of Histone Demethylase No66
Length = 463
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 133 TSDQLNNTLIAKVLNKGDVFVFPQGLIH 160
+ D L ++ VL GD+ FP+G IH
Sbjct: 200 SQDDLGEPVLQTVLEPGDLLYFPRGFIH 227
>pdb|3BUL|A Chain A, E. Coli I690cG743C METH C-Terminal Fragment (649-1227)
pdb|3IV9|A Chain A, Structure Of The B12-Dependent Methionine Synthase (Meth)
C-Teminal Half In A "his-On" Conformation
pdb|3IVA|A Chain A, Structure Of The B12-Dependent Methionine Synthase (Meth)
C-Teminal Half With Adohcy Bound
Length = 579
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 55 ARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHP 114
AR DF F A+RLGV E +A++E + N + + F + ++ G+ P +
Sbjct: 261 ARDNDFAFDWQAYTPPVAHRLGVQEVEASIETL--RNYIDWTPFFMTWSLAGKYPRILE- 317
Query: 115 RASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLN-KGDVFVFP 155
E+ V L+ +D L+ K LN +G V +FP
Sbjct: 318 --DEVVGVEAQRLFKD--ANDMLDKLSAEKTLNPRGVVGLFP 355
>pdb|1K7Y|A Chain A, E. Coli Meth C-Terminal Fragment (649-1227)
pdb|1K98|A Chain A, Adomet Complex Of Meth C-Terminal Fragment
Length = 577
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 55 ARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHP 114
AR DF F A+RLGV E +A++E + N + + F + ++ G+ P +
Sbjct: 259 ARDNDFAFDWQAYTPPVAHRLGVQEVEASIETL--RNYIDWTPFFMTWSLAGKYPRILE- 315
Query: 115 RASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLN-KGDVFVFP 155
E+ V L+ +D L+ K LN +G V +FP
Sbjct: 316 --DEVVGVEAQRLFKD--ANDMLDKLSAEKTLNPRGVVGLFP 353
>pdb|1WKY|A Chain A, Crystal Structure Of Alkaline Mannanase From Bacillus Sp.
Strain Jamb- 602: Catalytic Domain And Its Carbohydrate
Binding Module
Length = 464
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 76 GVDETDANVEQIPGLNTLGIS-AFRIDYAPYGQRPPHIHPRASEIF 120
G D + IP L G++ ID A +GQ P IH E+F
Sbjct: 139 GAAWADGYKQAIPRLRNAGLNNTLMIDAAGWGQFPQSIHDYGREVF 184
>pdb|3CDI|A Chain A, Crystal Structure Of E. Coli Pnpase
Length = 723
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 22/64 (34%)
Query: 140 TLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINP 199
TLIA+++++ +FP+G ++ EV + TV NP +NP
Sbjct: 95 TLIARLIDRPIRPLFPEGFVN----------------------EVQVIATVVSVNPQVNP 132
Query: 200 DFLG 203
D +
Sbjct: 133 DIVA 136
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 144 KVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALN-SQFPGEVTIADTVF--GANPSI 197
+ N+GDV V P G+ ++ +N G A S L+ S F ++ VF NP I
Sbjct: 115 RHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDI 171
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 7/131 (5%)
Query: 87 IPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVL 146
+P L G+SA + G PH + A+ + V G V V N + L
Sbjct: 359 LPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNXQ--GNAVFDGEL 416
Query: 147 NKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAF 206
+G + V PQ + + G Y + + VF A PS + L ++
Sbjct: 417 RRGQLLVVPQNFVVAE--QGGEQGLEYVVFKTHHNAVSSYIKDVFRAIPS---EVLSNSY 471
Query: 207 QLDPKIVKDLQ 217
L V+ L+
Sbjct: 472 NLGQSQVRQLK 482
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 144 KVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALN-SQFPGEVTIADTVF--GANPSI 197
+ N+GDV V P G+ ++ +N G A S L+ S F ++ VF NP I
Sbjct: 114 RHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDI 170
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 7/131 (5%)
Query: 87 IPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVL 146
+P L G+SA + G PH + A+ + V G V V N + L
Sbjct: 358 LPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQ--GNAVFDGEL 415
Query: 147 NKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAF 206
+G + V PQ + + G Y + + VF A PS + L ++
Sbjct: 416 RRGQLLVVPQNFVVAE--QGGEQGLEYVVFKTHHNAVSSYIKDVFRAIPS---EVLSNSY 470
Query: 207 QLDPKIVKDLQ 217
L V+ L+
Sbjct: 471 NLGQSQVRQLK 481
>pdb|2WHL|A Chain A, Understanding How Diverse Mannanases Recognise
Heterogeneous Substrates
Length = 294
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 16/95 (16%)
Query: 42 VFVNGKFCKDPK--LARAEDFFFSG----LGKPG----NTANRL-----GVDETDANVEQ 86
V V+ +D + L RA D++ +GK N AN G D ++
Sbjct: 82 VEVHDATGRDSRSDLNRAVDYWIEMKDALIGKEDTVIINIANEWYGSWDGSAWADGYIDV 141
Query: 87 IPGLNTLGIS-AFRIDYAPYGQRPPHIHPRASEIF 120
IP L G++ +D A +GQ P IH ++F
Sbjct: 142 IPKLRDAGLTHTLMVDAAGWGQYPQSIHDYGQDVF 176
>pdb|3JUG|A Chain A, Crystal Structure Of Endo-Beta-1,4-Mannanase From The
Alkaliphilic Bacillus Sp. N16-5
Length = 345
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 76 GVDETDANVEQIPGLNTLGIS-AFRIDYAPYGQRPPHIHPRASEIF 120
G D ++ IP L G++ +D A +GQ P IH ++F
Sbjct: 154 GAAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQYPQSIHDYGQDVF 199
>pdb|2WHJ|A Chain A, Understanding How Diverse Mannanases Recognise
Heterogeneous Substrates
Length = 308
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 81 DANVEQIPGLNTLGIS-AFRIDYAPYGQRPPHIHPRASEIF 120
D ++ IP L G++ +D A +GQ P IH ++F
Sbjct: 137 DGYIDVIPKLRDAGLTHTLMVDAAGWGQYPQSIHDYGQDVF 177
>pdb|3GCM|A Chain A, Crystal Structure Of E. Coli Polynucleotide Phosphorylase
Bound To Rna And Rnase E
pdb|3GCM|B Chain B, Crystal Structure Of E. Coli Polynucleotide Phosphorylase
Bound To Rna And Rnase E
pdb|3GCM|C Chain C, Crystal Structure Of E. Coli Polynucleotide Phosphorylase
Bound To Rna And Rnase E
pdb|3GLL|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core
pdb|3GME|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase In
Complex With Rnase E And Manganese
Length = 549
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 22/65 (33%)
Query: 139 NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIN 198
TLIA+++++ +FP+G F EV + TV NP +N
Sbjct: 88 ETLIARLIDRPIRPLFPEG----------------------FVNEVQVIATVVSVNPQVN 125
Query: 199 PDFLG 203
PD +
Sbjct: 126 PDIVA 130
>pdb|3CDJ|A Chain A, Crystal Structure Of The E. Coli KhS1 DOMAIN TRUNCATED
Pnpase
Length = 559
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 22/65 (33%)
Query: 139 NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIN 198
TLIA+++++ +FP+G F EV + TV NP +N
Sbjct: 94 ETLIARLIDRPIRPLFPEG----------------------FVNEVQVIATVVSVNPQVN 131
Query: 199 PDFLG 203
PD +
Sbjct: 132 PDIVA 136
>pdb|3H1C|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
pdb|3H1C|B Chain B, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
pdb|3H1C|C Chain C, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
pdb|3H1C|G Chain G, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
pdb|3H1C|I Chain I, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
pdb|3H1C|K Chain K, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
pdb|3H1C|M Chain M, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
pdb|3H1C|O Chain O, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
pdb|3H1C|R Chain R, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
pdb|3H1C|T Chain T, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
pdb|3H1C|V Chain V, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
pdb|3H1C|X Chain X, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase)
Core Bound To Rnase E And Tungstate
Length = 549
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 22/65 (33%)
Query: 139 NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIN 198
TLIA+++++ +FP+G F EV + TV NP +N
Sbjct: 88 ETLIARLIDRPIRPLFPEG----------------------FVNEVQVIATVVSVNPQVN 125
Query: 199 PDFLG 203
PD +
Sbjct: 126 PDIVA 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.142 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,762,234
Number of Sequences: 62578
Number of extensions: 277232
Number of successful extensions: 542
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 26
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)