Query 027381
Match_columns 224
No_of_seqs 289 out of 1759
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 09:06:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 100.0 1.3E-27 2.9E-32 217.8 19.9 162 47-219 201-362 (367)
2 PLN00212 glutelin; Provisional 99.9 4.2E-24 9.2E-29 200.0 18.2 146 70-221 323-470 (493)
3 TIGR03404 bicupin_oxalic bicup 99.9 3.3E-23 7.2E-28 189.0 18.0 146 59-219 37-185 (367)
4 PF00190 Cupin_1: Cupin; Inte 99.9 1.9E-23 4E-28 167.1 12.1 134 63-213 2-143 (144)
5 smart00835 Cupin_1 Cupin. This 99.8 6.1E-20 1.3E-24 147.0 16.9 135 73-213 8-145 (146)
6 PLN00212 glutelin; Provisional 99.8 2.6E-19 5.7E-24 167.8 19.7 141 74-219 60-249 (493)
7 COG2140 Thermophilic glucose-6 99.8 1.2E-18 2.6E-23 146.1 12.5 151 56-221 49-201 (209)
8 PF07883 Cupin_2: Cupin domain 99.4 4.6E-13 9.9E-18 93.3 7.8 70 99-176 2-71 (71)
9 COG1917 Uncharacterized conser 99.4 6.8E-12 1.5E-16 98.4 11.2 85 86-178 34-118 (131)
10 COG0662 {ManC} Mannose-6-phosp 99.4 9.7E-12 2.1E-16 97.6 12.0 83 93-183 34-116 (127)
11 PRK13290 ectC L-ectoine syntha 99.3 1.4E-11 3.1E-16 96.7 11.6 82 93-184 33-115 (125)
12 PRK04190 glucose-6-phosphate i 99.3 6.1E-11 1.3E-15 99.4 13.5 88 89-179 62-157 (191)
13 COG4101 Predicted mannose-6-ph 99.2 2.8E-10 6E-15 87.7 9.9 85 94-183 45-129 (142)
14 COG3837 Uncharacterized conser 99.2 2.4E-10 5.2E-15 91.9 9.5 92 86-187 35-129 (161)
15 TIGR01479 GMP_PMI mannose-1-ph 99.1 9.8E-10 2.1E-14 103.6 12.5 78 94-179 375-452 (468)
16 PRK11171 hypothetical protein; 99.1 3.5E-09 7.6E-14 93.0 14.6 108 51-176 27-135 (266)
17 PRK09943 DNA-binding transcrip 99.1 2.4E-09 5.3E-14 88.8 11.9 75 94-177 106-181 (185)
18 PRK15460 cpsB mannose-1-phosph 99.1 1.7E-09 3.7E-14 102.2 12.2 77 94-178 384-460 (478)
19 PF01050 MannoseP_isomer: Mann 99.0 3.5E-09 7.6E-14 85.7 10.8 76 94-177 62-137 (151)
20 TIGR03214 ura-cupin putative a 98.9 9.5E-09 2.1E-13 90.0 10.8 72 94-174 178-250 (260)
21 TIGR03214 ura-cupin putative a 98.9 1.8E-08 3.8E-13 88.3 12.1 75 94-176 57-132 (260)
22 PRK11171 hypothetical protein; 98.8 2.3E-08 5E-13 87.9 10.7 75 94-177 183-258 (266)
23 PRK13264 3-hydroxyanthranilate 98.7 1.7E-07 3.7E-12 77.4 9.4 69 100-175 39-107 (177)
24 TIGR03037 anthran_nbaC 3-hydro 98.6 3E-07 6.4E-12 74.8 9.8 60 103-167 36-95 (159)
25 PF02041 Auxin_BP: Auxin bindi 98.6 4.8E-07 1E-11 72.5 10.6 100 87-189 38-139 (167)
26 PF06560 GPI: Glucose-6-phosph 98.6 5E-07 1.1E-11 75.2 11.2 86 90-178 45-146 (182)
27 PF11699 CENP-C_C: Mif2/CENP-C 98.5 7.3E-07 1.6E-11 65.5 9.3 73 94-175 11-84 (85)
28 TIGR02451 anti_sig_ChrR anti-s 98.4 1.7E-06 3.7E-11 73.9 8.5 72 95-179 127-198 (215)
29 PF02311 AraC_binding: AraC-li 98.4 1.9E-06 4.1E-11 65.6 7.8 64 104-176 12-75 (136)
30 PF03079 ARD: ARD/ARD' family; 98.4 4.5E-06 9.7E-11 68.0 10.2 71 107-182 84-154 (157)
31 PF12973 Cupin_7: ChrR Cupin-l 98.3 1.6E-06 3.4E-11 64.0 6.6 66 94-174 23-88 (91)
32 PRK10371 DNA-binding transcrip 98.3 3.2E-06 7E-11 75.3 8.8 61 98-167 29-89 (302)
33 PRK15457 ethanolamine utilizat 98.3 9.5E-06 2.1E-10 69.6 10.6 70 95-177 157-226 (233)
34 COG1791 Uncharacterized conser 98.1 2.4E-05 5.2E-10 64.1 9.8 73 109-186 89-161 (181)
35 COG4297 Uncharacterized protei 98.0 2.1E-05 4.6E-10 62.3 6.9 67 105-177 52-119 (163)
36 PRK10296 DNA-binding transcrip 98.0 5.8E-05 1.3E-09 65.8 10.1 52 105-165 33-84 (278)
37 PF05523 FdtA: WxcM-like, C-te 97.9 7.3E-05 1.6E-09 59.1 9.2 96 76-179 15-112 (131)
38 PRK13501 transcriptional activ 97.9 3.4E-05 7.4E-10 67.8 8.0 62 95-167 20-81 (290)
39 TIGR02272 gentisate_1_2 gentis 97.9 3.2E-05 7E-10 70.1 7.4 75 95-177 81-155 (335)
40 PF06339 Ectoine_synth: Ectoin 97.8 0.00025 5.4E-09 55.4 10.3 83 92-183 32-114 (126)
41 TIGR02297 HpaA 4-hydroxyphenyl 97.8 6.3E-05 1.4E-09 65.6 7.6 60 105-172 33-92 (287)
42 PRK13500 transcriptional activ 97.8 8.8E-05 1.9E-09 66.2 8.5 55 104-167 57-111 (312)
43 KOG2107 Uncharacterized conser 97.8 3.8E-05 8.3E-10 62.5 5.1 55 107-165 85-139 (179)
44 COG3435 Gentisate 1,2-dioxygen 97.8 4.9E-05 1.1E-09 67.4 5.8 92 79-178 71-167 (351)
45 PF05899 Cupin_3: Protein of u 97.7 9E-05 1.9E-09 52.8 6.1 58 95-162 7-64 (74)
46 PRK13503 transcriptional activ 97.7 0.00012 2.6E-09 63.5 7.6 53 104-165 24-76 (278)
47 PF06052 3-HAO: 3-hydroxyanthr 97.6 0.0006 1.3E-08 54.8 10.0 79 98-183 36-114 (151)
48 PRK13502 transcriptional activ 97.6 0.0002 4.4E-09 62.4 7.6 56 103-167 26-81 (282)
49 PF14499 DUF4437: Domain of un 97.6 9.8E-05 2.1E-09 64.5 5.4 72 94-173 35-106 (251)
50 COG3257 GlxB Uncharacterized p 97.6 0.00064 1.4E-08 58.0 9.7 74 95-176 61-135 (264)
51 COG1898 RfbC dTDP-4-dehydrorha 97.3 0.0026 5.7E-08 52.6 10.4 71 104-174 54-130 (173)
52 TIGR02272 gentisate_1_2 gentis 97.2 0.0018 3.9E-08 58.8 8.7 87 76-175 232-319 (335)
53 PF06249 EutQ: Ethanolamine ut 97.2 0.0009 2E-08 54.2 6.0 69 95-176 77-145 (152)
54 COG4766 EutQ Ethanolamine util 97.1 0.0045 9.7E-08 50.0 9.0 69 94-175 99-167 (176)
55 PF00908 dTDP_sugar_isom: dTDP 96.9 0.0074 1.6E-07 50.1 9.0 81 103-183 51-139 (176)
56 TIGR01221 rmlC dTDP-4-dehydror 96.8 0.0098 2.1E-07 49.4 9.2 80 103-183 52-139 (176)
57 PF05995 CDO_I: Cysteine dioxy 96.7 0.03 6.5E-07 46.2 11.4 86 94-179 74-165 (175)
58 COG3450 Predicted enzyme of th 96.7 0.0033 7.2E-08 48.7 5.1 59 95-163 45-103 (116)
59 PF04209 HgmA: homogentisate 1 96.0 0.05 1.1E-06 50.9 9.7 62 108-177 138-199 (424)
60 COG3435 Gentisate 1,2-dioxygen 95.9 0.027 5.9E-07 50.3 7.1 64 102-175 268-331 (351)
61 PF07385 DUF1498: Protein of u 95.9 0.052 1.1E-06 46.5 8.4 77 99-177 91-187 (225)
62 PF13621 Cupin_8: Cupin-like d 95.7 0.055 1.2E-06 45.7 7.9 72 97-169 132-236 (251)
63 PRK05341 homogentisate 1,2-dio 95.4 0.15 3.3E-06 47.8 10.3 57 108-173 146-202 (438)
64 TIGR01015 hmgA homogentisate 1 95.4 0.14 3E-06 48.0 9.9 62 108-177 140-201 (429)
65 PLN02658 homogentisate 1,2-dio 95.3 0.17 3.7E-06 47.5 10.2 57 108-173 139-195 (435)
66 PF08007 Cupin_4: Cupin superf 95.2 0.22 4.7E-06 44.9 10.5 70 96-166 114-200 (319)
67 PF02678 Pirin: Pirin; InterP 95.0 0.12 2.5E-06 39.6 7.0 63 105-174 39-104 (107)
68 PF14499 DUF4437: Domain of un 94.9 0.027 5.9E-07 49.3 3.6 75 95-177 171-245 (251)
69 PF12852 Cupin_6: Cupin 94.5 0.2 4.3E-06 41.1 7.6 45 117-167 36-80 (186)
70 COG3806 ChrR Transcriptional a 94.3 0.28 6.1E-06 41.4 8.0 88 74-179 112-199 (216)
71 PF13759 2OG-FeII_Oxy_5: Putat 94.0 0.17 3.7E-06 37.6 5.8 73 101-173 6-98 (101)
72 PF02373 JmjC: JmjC domain, hy 93.9 0.12 2.7E-06 38.4 4.8 30 139-168 78-107 (114)
73 COG1741 Pirin-related protein 93.8 0.25 5.5E-06 43.9 7.4 71 99-176 48-122 (276)
74 PF07847 DUF1637: Protein of u 93.7 0.39 8.4E-06 40.7 8.0 89 90-179 39-144 (200)
75 KOG3995 3-hydroxyanthranilate 93.7 0.14 2.9E-06 43.8 5.1 58 103-165 41-98 (279)
76 PRK10572 DNA-binding transcrip 93.4 0.34 7.3E-06 42.3 7.5 44 116-167 49-92 (290)
77 PRK12335 tellurite resistance 92.9 0.54 1.2E-05 41.4 8.1 62 103-166 19-82 (287)
78 PRK09685 DNA-binding transcrip 92.6 0.91 2E-05 39.7 9.1 67 95-169 45-116 (302)
79 KOG3706 Uncharacterized conser 92.5 0.083 1.8E-06 50.0 2.4 91 74-165 285-404 (629)
80 PF05118 Asp_Arg_Hydrox: Aspar 92.1 0.71 1.5E-05 37.5 7.2 82 84-173 67-155 (163)
81 TIGR02466 conserved hypothetic 91.7 1.1 2.3E-05 38.0 8.0 75 97-177 98-197 (201)
82 COG3822 ABC-type sugar transpo 91.2 1.1 2.4E-05 37.7 7.4 79 98-178 89-187 (225)
83 PRK00924 5-keto-4-deoxyuronate 91.0 1.7 3.6E-05 38.7 8.8 82 94-180 174-261 (276)
84 COG5553 Predicted metal-depend 90.8 1.2 2.7E-05 36.5 7.1 70 95-169 73-148 (191)
85 COG3508 HmgA Homogentisate 1,2 90.5 3.6 7.7E-05 37.9 10.5 60 105-173 134-194 (427)
86 PRK10579 hypothetical protein; 89.8 3 6.5E-05 31.1 7.9 48 111-164 36-83 (94)
87 PF06865 DUF1255: Protein of u 89.6 3.7 8E-05 30.7 8.3 54 102-164 30-83 (94)
88 PRK15131 mannose-6-phosphate i 89.3 2.4 5.3E-05 39.4 8.8 59 94-163 320-378 (389)
89 COG3257 GlxB Uncharacterized p 89.1 2 4.3E-05 37.1 7.3 72 92-172 179-251 (264)
90 PF04962 KduI: KduI/IolB famil 88.8 7.3 0.00016 34.3 11.0 97 78-180 136-247 (261)
91 PLN02288 mannose-6-phosphate i 88.5 1.5 3.2E-05 40.9 6.8 58 94-158 333-390 (394)
92 KOG2757 Mannose-6-phosphate is 88.2 2.7 5.9E-05 38.8 8.1 75 94-177 332-406 (411)
93 PF09313 DUF1971: Domain of un 87.8 5.6 0.00012 28.9 8.1 62 105-167 13-75 (82)
94 PF05726 Pirin_C: Pirin C-term 87.4 2.5 5.5E-05 31.5 6.4 67 98-175 2-68 (104)
95 TIGR00218 manA mannose-6-phosp 87.2 5.6 0.00012 35.4 9.6 59 94-163 234-292 (302)
96 PRK09391 fixK transcriptional 86.6 8.3 0.00018 32.5 9.9 125 94-221 35-204 (230)
97 PF11142 DUF2917: Protein of u 86.5 2.3 5.1E-05 29.2 5.2 57 100-164 2-58 (63)
98 PF14525 AraC_binding_2: AraC- 86.2 9.4 0.0002 29.7 9.5 68 95-170 34-101 (172)
99 COG2850 Uncharacterized conser 84.7 2.5 5.5E-05 38.9 6.1 64 101-165 125-202 (383)
100 PRK11753 DNA-binding transcrip 83.9 13 0.00028 30.4 9.6 121 98-221 21-193 (211)
101 PF00027 cNMP_binding: Cyclic 81.5 4.4 9.5E-05 27.8 5.1 37 116-154 17-53 (91)
102 PRK13918 CRP/FNR family transc 80.0 9 0.0002 31.1 7.3 55 99-155 8-63 (202)
103 smart00100 cNMP Cyclic nucleot 79.8 12 0.00026 26.3 7.1 55 98-155 18-72 (120)
104 COG3123 Uncharacterized protei 76.9 9.4 0.0002 28.0 5.6 42 115-162 40-81 (94)
105 cd00038 CAP_ED effector domain 74.3 15 0.00033 25.7 6.4 55 98-155 18-72 (115)
106 PHA02984 hypothetical protein; 72.9 22 0.00049 31.5 7.9 45 117-165 92-138 (286)
107 COG1482 ManA Phosphomannose is 71.4 34 0.00074 31.0 9.0 58 94-162 241-298 (312)
108 TIGR00218 manA mannose-6-phosp 71.3 2.5 5.4E-05 37.7 1.8 19 143-161 152-170 (302)
109 PF04622 ERG2_Sigma1R: ERG2 an 69.7 15 0.00032 31.5 6.1 93 105-211 111-205 (216)
110 PRK10402 DNA-binding transcrip 67.3 17 0.00036 30.5 6.0 53 100-155 34-86 (226)
111 COG1482 ManA Phosphomannose is 66.9 5.1 0.00011 36.2 2.8 21 143-163 159-179 (312)
112 PF04962 KduI: KduI/IolB famil 66.9 34 0.00073 30.1 8.0 78 79-167 14-99 (261)
113 PLN02868 acyl-CoA thioesterase 65.9 23 0.00051 32.8 7.2 53 98-154 32-84 (413)
114 PF06172 Cupin_5: Cupin superf 65.4 68 0.0015 25.5 11.7 77 95-175 41-124 (139)
115 PRK15131 mannose-6-phosphate i 65.3 5.6 0.00012 37.0 2.9 20 143-162 238-257 (389)
116 PHA02890 hypothetical protein; 64.5 41 0.00089 29.7 7.8 45 116-164 90-136 (278)
117 PRK15186 AraC family transcrip 63.1 25 0.00055 31.3 6.5 46 117-169 39-84 (291)
118 KOG4281 Uncharacterized conser 63.0 3.4 7.3E-05 35.4 0.9 40 94-133 74-113 (236)
119 PRK03606 ureidoglycolate hydro 61.5 67 0.0015 26.3 8.2 65 109-173 72-138 (162)
120 PRK00924 5-keto-4-deoxyuronate 60.9 73 0.0016 28.4 8.9 51 115-173 72-125 (276)
121 PF04115 Ureidogly_hydro: Urei 60.0 56 0.0012 26.6 7.6 66 110-175 74-143 (165)
122 KOG1417 Homogentisate 1,2-diox 59.4 98 0.0021 28.2 9.4 62 108-177 147-208 (446)
123 TIGR03697 NtcA_cyano global ni 59.1 31 0.00066 27.6 5.9 38 115-154 10-47 (193)
124 PF07172 GRP: Glycine rich pro 55.6 12 0.00026 27.9 2.7 12 1-12 1-12 (95)
125 PRK10202 ebgC cryptic beta-D-g 54.6 87 0.0019 25.0 7.7 54 109-163 58-127 (149)
126 KOG2130 Phosphatidylserine-spe 53.1 22 0.00047 32.5 4.3 103 76-184 191-305 (407)
127 COG0664 Crp cAMP-binding prote 52.7 61 0.0013 25.7 6.7 56 98-156 24-79 (214)
128 TIGR00022 uncharacterized prot 52.3 88 0.0019 24.6 7.4 56 107-162 60-133 (142)
129 COG2731 EbgC Beta-galactosidas 48.8 71 0.0015 26.0 6.3 61 107-167 60-137 (154)
130 COG3718 IolB Uncharacterized e 47.8 1.7E+02 0.0037 25.7 8.7 87 78-168 15-103 (270)
131 PF04074 DUF386: Domain of unk 47.5 60 0.0013 25.7 5.8 57 107-163 60-134 (153)
132 PRK11161 fumarate/nitrate redu 47.3 62 0.0013 26.9 6.1 52 101-155 41-92 (235)
133 PF13464 DUF4115: Domain of un 46.0 99 0.0021 21.4 7.5 48 123-173 5-52 (77)
134 PRK09392 ftrB transcriptional 45.0 49 0.0011 27.6 5.2 52 99-154 32-83 (236)
135 COG3717 KduI 5-keto 4-deoxyuro 42.3 1.1E+02 0.0023 27.0 6.6 82 94-180 176-263 (278)
136 PF13640 2OG-FeII_Oxy_3: 2OG-F 42.2 60 0.0013 23.1 4.6 65 100-165 4-86 (100)
137 PLN02288 mannose-6-phosphate i 41.8 19 0.00042 33.6 2.3 20 144-163 253-272 (394)
138 PF13994 PgaD: PgaD-like prote 40.6 33 0.00072 27.0 3.2 23 197-219 101-123 (138)
139 PRK14585 pgaD putative PGA bio 40.4 31 0.00068 27.5 3.0 25 195-219 88-112 (137)
140 PRK14584 hmsS hemin storage sy 39.6 35 0.00076 27.7 3.2 25 195-219 97-121 (153)
141 COG1741 Pirin-related protein 39.4 2.8E+02 0.006 24.7 11.9 43 86-130 165-207 (276)
142 PF14801 GCD14_N: tRNA methylt 39.1 65 0.0014 21.6 3.9 36 128-166 11-46 (54)
143 KOG2131 Uncharacterized conser 39.1 34 0.00074 31.8 3.4 63 104-168 207-294 (427)
144 PF13348 Y_phosphatase3C: Tyro 37.0 36 0.00078 23.0 2.6 24 197-220 44-67 (68)
145 PF02787 CPSase_L_D3: Carbamoy 36.0 37 0.00081 26.3 2.8 26 196-221 72-97 (123)
146 PRK13395 ureidoglycolate hydro 35.9 2.5E+02 0.0054 23.2 8.0 66 110-175 73-141 (171)
147 KOG0500 Cyclic nucleotide-gate 35.8 71 0.0015 30.9 5.0 33 115-152 347-379 (536)
148 COG1188 Ribosome-associated he 34.9 14 0.00031 27.8 0.3 28 29-61 28-55 (100)
149 PF10913 DUF2706: Protein of u 34.6 73 0.0016 21.2 3.5 47 2-50 3-49 (60)
150 KOG1356 Putative transcription 32.3 16 0.00036 37.1 0.3 61 101-167 761-824 (889)
151 PF05721 PhyH: Phytanoyl-CoA d 29.6 85 0.0019 24.7 4.1 27 142-168 180-207 (211)
152 PHA00672 hypothetical protein 29.1 3E+02 0.0064 21.9 7.6 70 94-173 46-115 (152)
153 PLN03192 Voltage-dependent pot 28.8 1E+02 0.0022 31.4 5.2 52 97-152 397-448 (823)
154 TIGR02408 ectoine_ThpD ectoine 28.8 68 0.0015 28.0 3.6 37 143-179 212-250 (277)
155 PRK02290 3-dehydroquinate synt 28.6 2E+02 0.0043 26.5 6.5 85 74-164 250-336 (344)
156 KOG0498 K+-channel ERG and rel 27.9 1.1E+02 0.0023 31.1 5.0 48 102-153 447-494 (727)
157 PF06719 AraC_N: AraC-type tra 27.6 2.7E+02 0.0059 22.0 6.6 50 117-174 24-76 (155)
158 KOG3416 Predicted nucleic acid 27.3 2.6E+02 0.0056 22.2 6.1 65 88-164 12-80 (134)
159 COG5553 Predicted metal-depend 27.3 1.1E+02 0.0025 25.3 4.2 40 144-183 131-177 (191)
160 PF13384 HTH_23: Homeodomain-l 26.9 71 0.0015 19.8 2.5 26 196-221 17-42 (50)
161 PF10365 DUF2436: Domain of un 26.7 83 0.0018 25.4 3.3 38 25-64 105-142 (161)
162 PF01959 DHQS: 3-dehydroquinat 24.3 2.5E+02 0.0055 25.9 6.4 86 74-165 260-347 (354)
163 PRK05467 Fe(II)-dependent oxyg 23.9 2.1E+02 0.0046 24.6 5.6 25 143-167 142-166 (226)
164 PF04202 Mfp-3: Foot protein 3 23.6 64 0.0014 22.6 1.9 25 1-26 1-25 (71)
165 PRK15194 type-1 fimbrial prote 23.5 1.3E+02 0.0029 24.5 4.2 27 1-27 1-27 (185)
166 PF08194 DIM: DIM protein; In 23.2 73 0.0016 19.6 1.9 10 40-50 24-33 (36)
167 PF14453 ThiS-like: ThiS-like 22.9 68 0.0015 21.7 1.9 21 42-62 32-52 (57)
168 PF00325 Crp: Bacterial regula 22.6 92 0.002 18.4 2.2 25 197-221 3-27 (32)
169 PRK01322 6-carboxyhexanoate--C 22.5 1.5E+02 0.0033 25.9 4.5 60 14-85 161-221 (242)
170 PF12071 DUF3551: Protein of u 21.4 1.3E+02 0.0029 21.7 3.3 14 21-34 20-35 (82)
171 PF01238 PMI_typeI: Phosphoman 21.0 59 0.0013 30.0 1.7 20 144-163 252-271 (373)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.96 E-value=1.3e-27 Score=217.82 Aligned_cols=162 Identities=17% Similarity=0.210 Sum_probs=144.7
Q ss_pred cccCCCCCCCCCCceeecCCCCCCccCCCCceEEEeccCCCCCcccccEEEEEEEEcCCccCCCccCCCCcEEEEEEecE
Q 027381 47 KFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGT 126 (224)
Q Consensus 47 ~~ck~~~~v~~~df~f~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~ 126 (224)
.+-+.+..-.++.|+|++...++.. ..|++++.+++.+||+++ ++++++++++||++.++|||++++|++||++|+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~p~~--~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~ 276 (367)
T TIGR03404 201 EAVTGPAGEVPGPFTYHLSEQKPKQ--VPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQ 276 (367)
T ss_pred ccCcCCCCCCCccEEEEhhhCCcee--cCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEE
Confidence 3445566666778999998887743 567889999999999988 489999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEEecCCCCcceechhhhhcCCCCCCHHHHHhhc
Q 027381 127 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAF 206 (224)
Q Consensus 127 ~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~~~lf~~~p~~~~~vla~~f 206 (224)
+++++.+++ ++..++.+++||+++||+|..|+++|.|+++++++++|++..++.+.+++|+.. +|++||+++|
T Consensus 277 ~~~~v~d~~---g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l~~----~p~~vl~~~~ 349 (367)
T TIGR03404 277 ARMTVFAAG---GNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWLAL----TPPQLVAAHL 349 (367)
T ss_pred EEEEEEecC---CcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHHhh----CCHHHHHHHh
Confidence 999998765 344468999999999999999999999999999999999999999999999743 9999999999
Q ss_pred CCCHHHHHHHhhh
Q 027381 207 QLDPKIVKDLQNK 219 (224)
Q Consensus 207 ~~d~~~v~~l~~~ 219 (224)
+++++++++|++.
T Consensus 350 ~~~~~~~~~l~~~ 362 (367)
T TIGR03404 350 NLDDEVIDSLKKE 362 (367)
T ss_pred CcCHHHHHhcccc
Confidence 9999999999975
No 2
>PLN00212 glutelin; Provisional
Probab=99.92 E-value=4.2e-24 Score=199.98 Aligned_cols=146 Identities=20% Similarity=0.276 Sum_probs=125.0
Q ss_pred CccCCCCceEEEeccCCCCCcccccEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCC
Q 027381 70 NTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKG 149 (224)
Q Consensus 70 ~~~~~~g~~v~~~~~~~~P~l~~~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~G 149 (224)
++.++.+++++.+++.++|+|+++++++.+++|.+|+|.+||||++|+|++||++|++++++++++ |+++|..+|++|
T Consensus 323 d~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~--g~~vf~~~L~~G 400 (493)
T PLN00212 323 DTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNN--GKTVFNGVLRPG 400 (493)
T ss_pred CccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCC--CCEEEEEEEcCC
Confidence 344778999999999999999999999999999999999999999999999999999999999877 378999999999
Q ss_pred CEEEECCCCeeEEEecCCCcEEEEEEecCCCCcceech--hhhhcCCCCCCHHHHHhhcCCCHHHHHHHhhhhc
Q 027381 150 DVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIA--DTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFI 221 (224)
Q Consensus 150 Dv~~~P~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~--~~lf~~~p~~~~~vla~~f~~d~~~v~~l~~~~~ 221 (224)
|+++||+|.+|.... +++...+++...+.++-...++ .++|+. +|.+||+++|+++++++++||..+.
T Consensus 401 dvfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~a---lp~eVla~Af~is~eea~~lk~n~~ 470 (493)
T PLN00212 401 QLLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFRA---LPVDVIANAYRISREEARRLKNNRG 470 (493)
T ss_pred CEEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHHh---CCHHHHHHHcCCCHHHHHHHHhccc
Confidence 999999999997654 3455666655544443333332 578884 9999999999999999999999864
No 3
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.91 E-value=3.3e-23 Score=188.95 Aligned_cols=146 Identities=20% Similarity=0.261 Sum_probs=124.0
Q ss_pred CceeecCCCCCCccCCCCceEEEeccCCCCCcccccEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCC
Q 027381 59 DFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLN 138 (224)
Q Consensus 59 df~f~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g 138 (224)
-|.|+.-.++. ..|++++.++..+||++++ +++.+++++||++.++|||. +.|++||++|++++++++++
T Consensus 37 ~~~~~~~~~~~----~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d~~--- 106 (367)
T TIGR03404 37 KWSFSDSHNRL----ENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVDEN--- 106 (367)
T ss_pred eeeeccccCcc----ccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEcCC---
Confidence 35565433221 3578999999999999996 79999999999999999995 58999999999999999876
Q ss_pred CeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEEecCCC---CcceechhhhhcCCCCCCHHHHHhhcCCCHHHHHH
Q 027381 139 NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQF---PGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKD 215 (224)
Q Consensus 139 ~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~~~s~~---pg~~~~~~~lf~~~p~~~~~vla~~f~~d~~~v~~ 215 (224)
++.|.+.|++||+++||+|.+|+++|.+ +.+.++.+|++.. +..+.++++ |++ +|++||+++|++|++++++
T Consensus 107 g~~~~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~-l~~---~p~~Vla~~f~l~~~~~~~ 181 (367)
T TIGR03404 107 GRNYIDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDW-LAH---TPKDVLAKNFGVPESAFDN 181 (367)
T ss_pred CcEEEeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHH-HHh---CCHHHHHHHhCCCHHHHHh
Confidence 6877779999999999999999999985 5677888887753 557778777 475 9999999999999999999
Q ss_pred Hhhh
Q 027381 216 LQNK 219 (224)
Q Consensus 216 l~~~ 219 (224)
|++.
T Consensus 182 l~~~ 185 (367)
T TIGR03404 182 LPLK 185 (367)
T ss_pred cccc
Confidence 9975
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.90 E-value=1.9e-23 Score=167.06 Aligned_cols=134 Identities=31% Similarity=0.428 Sum_probs=109.8
Q ss_pred ecCCCCCCccCCCCceEEEeccCCCCCccccc-EEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCC--
Q 027381 63 SGLGKPGNTANRLGVDETDANVEQIPGLNTLG-ISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNN-- 139 (224)
Q Consensus 63 ~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~g-is~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~-- 139 (224)
++....+.. +..+++++.++..++|.+.++. +.+.++.++||++..|||| ++.|+.||++|+++++++.++ +
T Consensus 2 n~~~~~~~~-~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~---~~~ 76 (144)
T PF00190_consen 2 NLREPRPRV-SNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPG---GPQ 76 (144)
T ss_dssp ETCSSSEEE-EETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETT---CSS
T ss_pred CCCCCCCcc-cCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecC---Ccc
Confidence 444333333 4567789999999999666654 5566677799999999999 999999999999999999875 3
Q ss_pred ---eEEEEE--eCCCCEEEECCCCeeEEEecCCCcEEEEEEecCCCCcceechhhhhcCCCCCCHHHHHhhcCCCHHHH
Q 027381 140 ---TLIAKV--LNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIV 213 (224)
Q Consensus 140 ---~~~~~~--L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~~~lf~~~p~~~~~vla~~f~~d~~~v 213 (224)
+.+..+ +++||++++|+|.+||+.|.++++...+.+|.+.+|..+ +|+++++++|+++++++
T Consensus 77 ~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 77 EEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp SEEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHH
T ss_pred ccceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcC
Confidence 344555 999999999999999999999888888889988887766 78999999999999876
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.85 E-value=6.1e-20 Score=147.03 Aligned_cols=135 Identities=38% Similarity=0.606 Sum_probs=115.7
Q ss_pred CCCCceEEEeccCCCCCcccccEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEE
Q 027381 73 NRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 73 ~~~g~~v~~~~~~~~P~l~~~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~ 152 (224)
+..|+++..++..++|.+++.++.+.++.++||+..++|||+++.|++||++|++++.+.+.. +++.+...+++||++
T Consensus 8 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~--~~~~~~~~l~~GD~~ 85 (146)
T smart00835 8 SNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPN--GNKVYDARLREGDVF 85 (146)
T ss_pred cCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCC--CCeEEEEEecCCCEE
Confidence 445677999999999999999999999999999999999999889999999999999987643 145567899999999
Q ss_pred EECCCCeeEEEecCCCcEEEEEEecCCCCcceec---hhhhhcCCCCCCHHHHHhhcCCCHHHH
Q 027381 153 VFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTI---ADTVFGANPSINPDFLGKAFQLDPKIV 213 (224)
Q Consensus 153 ~~P~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~---~~~lf~~~p~~~~~vla~~f~~d~~~v 213 (224)
+||+|..|++.|.++++++++ ++.+++|..... ..++|. ++++++++++|+++++++
T Consensus 86 ~ip~g~~H~~~n~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 86 VVPQGHPHFQVNSGDENLEFV-AFNTNDPNRRFFLAGRNSVLR---GLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred EECCCCEEEEEcCCCCCEEEE-EEecCCCCceeEeecccchhh---cCCHHHHHHHhCcChHHc
Confidence 999999999999999999998 576677665321 245677 499999999999999875
No 6
>PLN00212 glutelin; Provisional
Probab=99.83 E-value=2.6e-19 Score=167.84 Aligned_cols=141 Identities=18% Similarity=0.317 Sum_probs=116.3
Q ss_pred CCCceEEEeccCCCCCcccccEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecC-CC-CCeE----------
Q 027381 74 RLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSD-QL-NNTL---------- 141 (224)
Q Consensus 74 ~~g~~v~~~~~~~~P~l~~~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~-~~-g~~~---------- 141 (224)
..|| +++....+-+.|...|+++.|++++|+|+..||+| ++.+++||++|++.++++.++ ++ .++.
T Consensus 60 se~G-~~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~ 137 (493)
T PLN00212 60 SEAG-VTEYFDEKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQS 137 (493)
T ss_pred ccCc-eeeecCCCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccc
Confidence 4455 77777788999999999999999999999999999 789999999999999999642 00 0010
Q ss_pred ----------EEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEEecCCCCc--------ceechh---------------
Q 027381 142 ----------IAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPG--------EVTIAD--------------- 188 (224)
Q Consensus 142 ----------~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~~~s~~pg--------~~~~~~--------------- 188 (224)
..+.|++||+++||+|++||++|.|+++++++.+++..++. .+.++.
T Consensus 138 ~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~~ 217 (493)
T PLN00212 138 QSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIEQ 217 (493)
T ss_pred cccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccccc
Confidence 12699999999999999999999999999888888644432 344443
Q ss_pred ----hhhcCCCCCCHHHHHhhcCCCHHHHHHHhhh
Q 027381 189 ----TVFGANPSINPDFLGKAFQLDPKIVKDLQNK 219 (224)
Q Consensus 189 ----~lf~~~p~~~~~vla~~f~~d~~~v~~l~~~ 219 (224)
++|+ +++.++|+.||+++.++++||+..
T Consensus 218 ~~~~nifs---GF~~e~La~Afnv~~e~~~klq~~ 249 (493)
T PLN00212 218 HSGQNIFS---GFSTELLSEALGINAQVAKRLQSQ 249 (493)
T ss_pred cccCchhh---cCCHHHHHHHHCCCHHHHHHHhcc
Confidence 3888 699999999999999999999854
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.79 E-value=1.2e-18 Score=146.11 Aligned_cols=151 Identities=22% Similarity=0.317 Sum_probs=133.7
Q ss_pred CCCCceeecCCCCCCccCCCCceEEEeccCCCCCcccccEEEEEEEEcCCccCCCccCCCCcE--EEEEEecEEEEEEEe
Q 027381 56 RAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASE--IFLVLEGTLYVGFVT 133 (224)
Q Consensus 56 ~~~df~f~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~gis~a~v~l~pgg~~~pH~Hp~a~E--i~~Vl~G~~~v~~~~ 133 (224)
..+||+|..+.+.+... |+.+....+..+|+- ..+.+.+.||++...||||+++| |.||++|++++.+.+
T Consensus 49 ~~~~~~yel~~~~~~~~---~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~ 120 (209)
T COG2140 49 KEDDFVYELLESEPGER---GGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK 120 (209)
T ss_pred CCCceEEEeeccccccc---CCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence 67899999877655542 888999999999986 45778899999999999999999 999999999999988
Q ss_pred cCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEEecCCCCcceechhhhhcCCCCCCHHHHHhhcCCCHHHH
Q 027381 134 SDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIV 213 (224)
Q Consensus 134 ~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~~~lf~~~p~~~~~vla~~f~~d~~~v 213 (224)
++ ++..+..+++||+++||++..|+..|+|++|.+++.++....+....+..++++ .+..+++..++.+.+.+
T Consensus 121 ~~---G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~ 193 (209)
T COG2140 121 PE---GEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLGG----MPPVLVENGLNKNPKYV 193 (209)
T ss_pred CC---CcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhcc----CCceeeccccccCcccc
Confidence 76 677789999999999999999999999999999999999999999999888876 78889999999888888
Q ss_pred HHHhhhhc
Q 027381 214 KDLQNKFI 221 (224)
Q Consensus 214 ~~l~~~~~ 221 (224)
|.++.++.
T Consensus 194 D~p~~~~~ 201 (209)
T COG2140 194 DVPRIKFA 201 (209)
T ss_pred cCcccccc
Confidence 88877665
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.44 E-value=4.6e-13 Score=93.33 Aligned_cols=70 Identities=30% Similarity=0.438 Sum_probs=62.8
Q ss_pred EEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEEe
Q 027381 99 RIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSAL 176 (224)
Q Consensus 99 ~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~~ 176 (224)
+++++||+..++|+|+...|++||++|++++.+ + ++ ...+++||.+++|+|..|...|.+++++.++.++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~-----~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-D-----GE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE-T-----TE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE-c-----cE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 578999999999999986699999999999984 3 45 4699999999999999999999999999998764
No 9
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.37 E-value=6.8e-12 Score=98.38 Aligned_cols=85 Identities=24% Similarity=0.341 Sum_probs=71.2
Q ss_pred CCCCcccccEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEec
Q 027381 86 QIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNI 165 (224)
Q Consensus 86 ~~P~l~~~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~ 165 (224)
-++...+..+.+.++.++||+..++|+||...+.+||++|++++++. ++ .+++++||++++|+|..|+..|.
T Consensus 34 ~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~------g~--~~~l~~Gd~i~ip~g~~H~~~a~ 105 (131)
T COG1917 34 VLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE------GE--KKELKAGDVIIIPPGVVHGLKAV 105 (131)
T ss_pred eccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec------CC--ceEecCCCEEEECCCCeeeeccC
Confidence 34444455688999999999999999999558999999999999984 23 36999999999999999999999
Q ss_pred CCCcEEEEEEecC
Q 027381 166 GKTNAAAYSALNS 178 (224)
Q Consensus 166 g~~~a~~i~~~~s 178 (224)
++.+...++++..
T Consensus 106 ~~~~~~~l~v~~~ 118 (131)
T COG1917 106 EDEPMVLLLVFPL 118 (131)
T ss_pred CCCceeEEEEeee
Confidence 9887666666654
No 10
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=9.7e-12 Score=97.59 Aligned_cols=83 Identities=28% Similarity=0.256 Sum_probs=73.0
Q ss_pred ccEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEE
Q 027381 93 LGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAA 172 (224)
Q Consensus 93 ~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~ 172 (224)
...+++++.+.||+...+|.|.+.+|++||++|++.+.+. ++ ...|++||+++||+|..|.+.|.|..++.+
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~------~~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~l 105 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG------GE--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVL 105 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC------CE--EEEecCCCEEEECCCCcEEEEcCCCcceEE
Confidence 3678999999999999999998899999999999999884 34 469999999999999999999999999999
Q ss_pred EEEecCCCCcc
Q 027381 173 YSALNSQFPGE 183 (224)
Q Consensus 173 i~~~~s~~pg~ 183 (224)
+.+......+.
T Consensus 106 iei~~p~~~~e 116 (127)
T COG0662 106 IEVQSPPYLGE 116 (127)
T ss_pred EEEecCCcCCC
Confidence 98876554443
No 11
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.35 E-value=1.4e-11 Score=96.71 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=70.3
Q ss_pred ccEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEE-EEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEE
Q 027381 93 LGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVG-FVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAA 171 (224)
Q Consensus 93 ~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~-~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~ 171 (224)
.++++.++.++||+..+.|+|.. .|++||++|++++. +.+ ++ +..|++||++++|++..|.+.|. +++.
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~-----g~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~ 102 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLAT-----GE--VHPIRPGTMYALDKHDRHYLRAG--EDMR 102 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCC-----CE--EEEeCCCeEEEECCCCcEEEEcC--CCEE
Confidence 35789999999999999999976 79999999999998 422 34 36999999999999999999997 8999
Q ss_pred EEEEecCCCCcce
Q 027381 172 AYSALNSQFPGEV 184 (224)
Q Consensus 172 ~i~~~~s~~pg~~ 184 (224)
++++++..-+|..
T Consensus 103 ~l~v~tP~~~~~~ 115 (125)
T PRK13290 103 LVCVFNPPLTGRE 115 (125)
T ss_pred EEEEECCCCCCcc
Confidence 9999886655543
No 12
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.30 E-value=6.1e-11 Score=99.41 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=73.7
Q ss_pred CcccccEEEEEEEEcCCcc------CCCccCCCC--cEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCee
Q 027381 89 GLNTLGISAFRIDYAPYGQ------RPPHIHPRA--SEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIH 160 (224)
Q Consensus 89 ~l~~~gis~a~v~l~pgg~------~~pH~Hp~a--~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H 160 (224)
.++.-++.+....+.||.. .+.|+|+.. .|+.||++|++.+.+.+.+ ++.....+++||+++||+|..|
T Consensus 62 ~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~---G~~~~~~v~pGd~v~IPpg~~H 138 (191)
T PRK04190 62 EETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPE---GEARWIEMEPGTVVYVPPYWAH 138 (191)
T ss_pred CCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCC---CcEEEEEECCCCEEEECCCCcE
Confidence 3455579999999999986 567999854 4999999999999886544 3334579999999999999999
Q ss_pred EEEecCCCcEEEEEEecCC
Q 027381 161 FQFNIGKTNAAAYSALNSQ 179 (224)
Q Consensus 161 ~~~N~g~~~a~~i~~~~s~ 179 (224)
...|.|++++++++++...
T Consensus 139 ~~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 139 RSVNTGDEPLVFLACYPAD 157 (191)
T ss_pred EeEECCCCCEEEEEEEcCC
Confidence 9999999999999887643
No 13
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=2.8e-10 Score=87.65 Aligned_cols=85 Identities=22% Similarity=0.300 Sum_probs=75.0
Q ss_pred cEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEE
Q 027381 94 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAY 173 (224)
Q Consensus 94 gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i 173 (224)
+|.+-.++++||.....|-|.+.+-.+||++|+..+++.+. -.+..+.++||+|+||+|++|.-.|.+++++..+
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~r-----LE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~v 119 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNR-----LEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAV 119 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccc-----eeeeEEecCCCeEEcCCCCCCcccccCCCCeEEE
Confidence 68899999999999999999998899999999999998532 2246789999999999999999999999999999
Q ss_pred EEecCCCCcc
Q 027381 174 SALNSQFPGE 183 (224)
Q Consensus 174 ~~~~s~~pg~ 183 (224)
.+.+..|+..
T Consensus 120 IaRsDp~~~E 129 (142)
T COG4101 120 IARSDPNPQE 129 (142)
T ss_pred EEccCCCCCc
Confidence 8888766654
No 14
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.15 E-value=2.4e-10 Score=91.90 Aligned_cols=92 Identities=22% Similarity=0.205 Sum_probs=72.8
Q ss_pred CCCCcccccEEEEEEEEcCCcc-CCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCC--CeeEE
Q 027381 86 QIPGLNTLGISAFRIDYAPYGQ-RPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQG--LIHFQ 162 (224)
Q Consensus 86 ~~P~l~~~gis~a~v~l~pgg~-~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G--~~H~~ 162 (224)
.+-||...|+ ....++||+. ...|||...+|++|||+|++++.+. +. ...|++||++-||+| ..|.+
T Consensus 35 ~~~Gl~~fGv--n~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d------~~--e~~lrpGD~~gFpAG~~~aHhl 104 (161)
T COG3837 35 DALGLKRFGV--NLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRED------GG--ETRLRPGDSAGFPAGVGNAHHL 104 (161)
T ss_pred hhcChhhccc--ceEEeCCCCccccccccccCceEEEEEcCceEEEEC------Ce--eEEecCCceeeccCCCcceeEE
Confidence 5566665455 5556799986 6789999999999999999999763 23 269999999999999 89999
Q ss_pred EecCCCcEEEEEEecCCCCcceech
Q 027381 163 FNIGKTNAAAYSALNSQFPGEVTIA 187 (224)
Q Consensus 163 ~N~g~~~a~~i~~~~s~~pg~~~~~ 187 (224)
.|.|+..++.+++-+-..-..+.++
T Consensus 105 iN~s~~~~~yL~vG~r~~~d~i~YP 129 (161)
T COG3837 105 INRSDVILRYLEVGTREPDDIITYP 129 (161)
T ss_pred eecCCceEEEEEeccccccceeecC
Confidence 9999999999987655444444443
No 15
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.09 E-value=9.8e-10 Score=103.58 Aligned_cols=78 Identities=22% Similarity=0.266 Sum_probs=70.0
Q ss_pred cEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEE
Q 027381 94 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAY 173 (224)
Q Consensus 94 gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i 173 (224)
.+.+.++.++||+..+.|+|++..|.+||++|++++.+. ++ +..|++||.++||+|..|.+.|.|++++.++
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~d------g~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i 446 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIG------DE--TLLLTENESTYIPLGVIHRLENPGKIPLELI 446 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEEC------CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEE
Confidence 578899999999998999998889999999999999873 45 3699999999999999999999999999999
Q ss_pred EEecCC
Q 027381 174 SALNSQ 179 (224)
Q Consensus 174 ~~~~s~ 179 (224)
++....
T Consensus 447 ~v~~~~ 452 (468)
T TIGR01479 447 EVQSGS 452 (468)
T ss_pred EEEcCC
Confidence 987643
No 16
>PRK11171 hypothetical protein; Provisional
Probab=99.08 E-value=3.5e-09 Score=93.05 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=80.6
Q ss_pred CCCCCCCCCceeecCCCCCCccCCCCceEEEeccCCCCCcccccEEEEEEEEcCCccCCCccCC-CCcEEEEEEecEEEE
Q 027381 51 DPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHP-RASEIFLVLEGTLYV 129 (224)
Q Consensus 51 ~~~~v~~~df~f~~~~~~~~~~~~~g~~v~~~~~~~~P~l~~~gis~a~v~l~pgg~~~pH~Hp-~a~Ei~~Vl~G~~~v 129 (224)
+.+.+++++.+.+.+..-. +..+...... . .+..+.+.+++++||+....|.|+ ...|++||++|++++
T Consensus 27 ~~a~~~p~~~v~~~lp~~~------~~~~~~L~~~---~-~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v 96 (266)
T PRK11171 27 AYAVIPPDDIVTSVLPGWE------NTRAWVLARP---G-LGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITL 96 (266)
T ss_pred CeEEECCcCEEeecCCCCC------CeEEEEEeCC---C-CCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEE
Confidence 3455666677666553222 2233333222 1 134689999999999987777765 558999999999999
Q ss_pred EEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEEe
Q 027381 130 GFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSAL 176 (224)
Q Consensus 130 ~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~~ 176 (224)
.+. ++ +..|++||.++||++..|.+.|.|++++.++++.
T Consensus 97 ~~~------g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~ 135 (266)
T PRK11171 97 TLE------GK--THALSEGGYAYLPPGSDWTLRNAGAEDARFHWIR 135 (266)
T ss_pred EEC------CE--EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEE
Confidence 873 44 4799999999999999999999999999999875
No 17
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.06 E-value=2.4e-09 Score=88.81 Aligned_cols=75 Identities=21% Similarity=0.184 Sum_probs=63.7
Q ss_pred cEEEEEEEEcCCccC-CCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEE
Q 027381 94 GISAFRIDYAPYGQR-PPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAA 172 (224)
Q Consensus 94 gis~a~v~l~pgg~~-~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~ 172 (224)
.+.+.+..++||+.. +.|+|+. .|++||++|++++.+. ++ .+.|++||.++||++.+|.+.|.+++++.+
T Consensus 106 ~~~~~~~~~~pg~~~~~~~~h~~-~E~~~Vl~G~~~~~~~------~~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~ 176 (185)
T PRK09943 106 TLAMIFETYQPGTTTGERIKHQG-EEIGTVLEGEIVLTIN------GQ--DYHLVAGQSYAINTGIPHSFSNTSAGICRI 176 (185)
T ss_pred eeEEEEEEccCCCCcccccccCC-cEEEEEEEeEEEEEEC------CE--EEEecCCCEEEEcCCCCeeeeCCCCCCeEE
Confidence 466777888999864 4677765 9999999999999873 44 369999999999999999999999999999
Q ss_pred EEEec
Q 027381 173 YSALN 177 (224)
Q Consensus 173 i~~~~ 177 (224)
+++..
T Consensus 177 l~~~~ 181 (185)
T PRK09943 177 ISAHT 181 (185)
T ss_pred EEEeC
Confidence 98754
No 18
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.06 E-value=1.7e-09 Score=102.17 Aligned_cols=77 Identities=22% Similarity=0.252 Sum_probs=69.0
Q ss_pred cEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEE
Q 027381 94 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAY 173 (224)
Q Consensus 94 gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i 173 (224)
++.+.+++++||+....|+|...+|.+||++|++++.+. ++ +..|++||.++||+|.+|.+.|.|++++.+|
T Consensus 384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~id------g~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI 455 (478)
T PRK15460 384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTID------GD--IKLLGENESIYIPLGATHCLENPGKIPLDLI 455 (478)
T ss_pred cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEEC------CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEE
Confidence 578899999999988778887778999999999999883 45 4799999999999999999999999999999
Q ss_pred EEecC
Q 027381 174 SALNS 178 (224)
Q Consensus 174 ~~~~s 178 (224)
++...
T Consensus 456 ~V~~g 460 (478)
T PRK15460 456 EVRSG 460 (478)
T ss_pred EEEcC
Confidence 88653
No 19
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.01 E-value=3.5e-09 Score=85.72 Aligned_cols=76 Identities=28% Similarity=0.295 Sum_probs=69.1
Q ss_pred cEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEE
Q 027381 94 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAY 173 (224)
Q Consensus 94 gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i 173 (224)
+..+-++.+.||....+|.|.+.+|..+|++|++.+.+. ++ .+.+++||.++||+|..|.+.|.|+.++.++
T Consensus 62 ~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~------~~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~I 133 (151)
T PF01050_consen 62 GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLD------DE--EFTLKEGDSVYIPRGAKHRIENPGKTPLEII 133 (151)
T ss_pred CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEEC------CE--EEEEcCCCEEEECCCCEEEEECCCCcCcEEE
Confidence 578899999999999999999899999999999999873 34 4799999999999999999999999999999
Q ss_pred EEec
Q 027381 174 SALN 177 (224)
Q Consensus 174 ~~~~ 177 (224)
.+-.
T Consensus 134 EVq~ 137 (151)
T PF01050_consen 134 EVQT 137 (151)
T ss_pred EEec
Confidence 7654
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.92 E-value=9.5e-09 Score=90.05 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=62.4
Q ss_pred cEEEEEEEEcCCccCCC-ccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEE
Q 027381 94 GISAFRIDYAPYGQRPP-HIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAA 172 (224)
Q Consensus 94 gis~a~v~l~pgg~~~p-H~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~ 172 (224)
++.+.+++++||+..+. |.|. .+|.+||++|++.+... ++ ...+++||++++|++.+|+.+|.|+++..+
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~-~eh~~yiL~G~G~~~~~------g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~ 248 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHV-MEHGLYVLEGKGVYNLD------NN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRY 248 (260)
T ss_pred CcEEEEEEECCCcccCCccccc-ceeEEEEEeceEEEEEC------CE--EEEecCCCEEEECCCCCEEEEecCCCcEEE
Confidence 57788899999999996 5554 58999999999999762 45 469999999999999999999999999988
Q ss_pred EE
Q 027381 173 YS 174 (224)
Q Consensus 173 i~ 174 (224)
|.
T Consensus 249 l~ 250 (260)
T TIGR03214 249 LL 250 (260)
T ss_pred EE
Confidence 74
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.91 E-value=1.8e-08 Score=88.34 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=64.7
Q ss_pred cEEEEEEEEcCCccC-CCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEE
Q 027381 94 GISAFRIDYAPYGQR-PPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAA 172 (224)
Q Consensus 94 gis~a~v~l~pgg~~-~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~ 172 (224)
.+.+.+++++||+.. .+|+|+...|++||++|++++.+. ++ +..|++||.+++|+|..|.+.|.+++++.+
T Consensus 57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~------g~--~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~ 128 (260)
T TIGR03214 57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAE------GE--THELREGGYAYLPPGSKWTLANAQAEDARF 128 (260)
T ss_pred cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEEC------CE--EEEECCCCEEEECCCCCEEEEECCCCCEEE
Confidence 578999999998764 466677778999999999999863 44 369999999999999999999999999999
Q ss_pred EEEe
Q 027381 173 YSAL 176 (224)
Q Consensus 173 i~~~ 176 (224)
+++-
T Consensus 129 l~v~ 132 (260)
T TIGR03214 129 FLYK 132 (260)
T ss_pred EEEE
Confidence 8765
No 22
>PRK11171 hypothetical protein; Provisional
Probab=98.85 E-value=2.3e-08 Score=87.88 Aligned_cols=75 Identities=15% Similarity=0.057 Sum_probs=64.6
Q ss_pred cEEEEEEEEcCCccCCCc-cCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEE
Q 027381 94 GISAFRIDYAPYGQRPPH-IHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAA 172 (224)
Q Consensus 94 gis~a~v~l~pgg~~~pH-~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~ 172 (224)
.+.+.+++++||+..+.| +| ...|.+||++|++++.+. ++ +..|++||++.||.+..|++.|.|++++.+
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~-~~ee~i~Vl~G~~~~~~~------~~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~y 253 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETH-VMEHGLYVLEGKGVYRLN------ND--WVEVEAGDFIWMRAYCPQACYAGGPGPFRY 253 (266)
T ss_pred CcEEEEEEECCCCEEccCcCC-CceEEEEEEeCEEEEEEC------CE--EEEeCCCCEEEECCCCCEEEECCCCCcEEE
Confidence 368899999999998885 55 458999999999999862 45 369999999999999999999999999999
Q ss_pred EEEec
Q 027381 173 YSALN 177 (224)
Q Consensus 173 i~~~~ 177 (224)
+.--+
T Consensus 254 l~~k~ 258 (266)
T PRK11171 254 LLYKD 258 (266)
T ss_pred EEEcc
Confidence 85443
No 23
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.65 E-value=1.7e-07 Score=77.39 Aligned_cols=69 Identities=19% Similarity=0.333 Sum_probs=54.2
Q ss_pred EEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEE
Q 027381 100 IDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSA 175 (224)
Q Consensus 100 v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~ 175 (224)
+.=.||....+|+|+. +|++|+++|++++.+.+. ++.....|++||++++|+|+.|..... +..+.+.+
T Consensus 39 vvgGpn~r~d~H~~~t-dE~FyqleG~~~l~v~d~----g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi 107 (177)
T PRK13264 39 VVGGPNARTDFHYDPG-EEFFYQLEGDMYLKVQED----GKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI 107 (177)
T ss_pred EEccCCcccccccCCC-ceEEEEECCeEEEEEEcC----CceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence 3336777888999985 999999999999999863 443357999999999999999998663 44444433
No 24
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.62 E-value=3e-07 Score=74.85 Aligned_cols=60 Identities=22% Similarity=0.402 Sum_probs=48.8
Q ss_pred cCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCC
Q 027381 103 APYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGK 167 (224)
Q Consensus 103 ~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 167 (224)
.||....+|.|+ .+|++|+++|++.+.+.+. ++.....|++||++++|+|+.|.....++
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~----g~~~~v~L~eGd~flvP~gvpHsP~r~~~ 95 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE----GKREDVPIREGDIFLLPPHVPHSPQRPAG 95 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC----CcEEEEEECCCCEEEeCCCCCcccccCCC
Confidence 555567789987 5999999999999998764 33335799999999999999998876433
No 25
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.62 E-value=4.8e-07 Score=72.45 Aligned_cols=100 Identities=17% Similarity=0.240 Sum_probs=58.6
Q ss_pred CCCcccccEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCC-CCeEEEEEeCCCCEEEECCCCeeEEEec
Q 027381 87 IPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQL-NNTLIAKVLNKGDVFVFPQGLIHFQFNI 165 (224)
Q Consensus 87 ~P~l~~~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~-g~~~~~~~L~~GDv~~~P~G~~H~~~N~ 165 (224)
.-|++ .+.+.+-++.||...|+|-|. .+|+++|++|+++..+...... .++..++.+.+++.|.||.+..|.++|.
T Consensus 38 ~hGmk--evEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT 114 (167)
T PF02041_consen 38 LHGMK--EVEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNT 114 (167)
T ss_dssp HH--S--SEEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE--
T ss_pred hcCce--eeeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecC
Confidence 45555 467788899999999999996 5999999999999988754310 0333467999999999999999999999
Q ss_pred C-CCcEEEEEEecCCCCcceechhh
Q 027381 166 G-KTNAAAYSALNSQFPGEVTIADT 189 (224)
Q Consensus 166 g-~~~a~~i~~~~s~~pg~~~~~~~ 189 (224)
+ .+++.++++++..--..+.+.+|
T Consensus 115 ~e~eDlqvlViiSrpPvkvf~y~dw 139 (167)
T PF02041_consen 115 NEHEDLQVLVIISRPPVKVFIYDDW 139 (167)
T ss_dssp -SSS-EEEEEEEESSS--EEEESST
T ss_pred CCCcceEEEEEecCCCeEEEEeccc
Confidence 9 48888887776544444555555
No 26
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.62 E-value=5e-07 Score=75.20 Aligned_cols=86 Identities=22% Similarity=0.249 Sum_probs=56.6
Q ss_pred cccccEEEEEEEEcCCcc------CCCccCCC------CcEEEEEEecEEEEEEEecCCCCC----eEEEEEeCCCCEEE
Q 027381 90 LNTLGISAFRIDYAPYGQ------RPPHIHPR------ASEIFLVLEGTLYVGFVTSDQLNN----TLIAKVLNKGDVFV 153 (224)
Q Consensus 90 l~~~gis~a~v~l~pgg~------~~pH~Hp~------a~Ei~~Vl~G~~~v~~~~~~~~g~----~~~~~~L~~GDv~~ 153 (224)
+...++......+.||.+ ..=|+|+. ..|+.+|++|++.+-+.+.. + +.+...+++||+++
T Consensus 45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~---~~~~~~~~~v~~~~G~~v~ 121 (182)
T PF06560_consen 45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEE---GDDVGDVIAVEAKPGDVVY 121 (182)
T ss_dssp -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TT---S-----EEEEEE-TTEEEE
T ss_pred ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecC---CCcceeEEEEEeCCCCEEE
Confidence 334457778888888754 34699998 78999999999999988765 4 56678999999999
Q ss_pred ECCCCeeEEEecCCCcEEEEEEecC
Q 027381 154 FPQGLIHFQFNIGKTNAAAYSALNS 178 (224)
Q Consensus 154 ~P~G~~H~~~N~g~~~a~~i~~~~s 178 (224)
||.+..|...|+|++++++.....+
T Consensus 122 IPp~yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 122 IPPGYAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp E-TT-EEEEEE-SSS-EEEEEEEET
T ss_pred ECCCceEEEEECCCCcEEEEEEEec
Confidence 9999999999999999988877654
No 27
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.55 E-value=7.3e-07 Score=65.46 Aligned_cols=73 Identities=26% Similarity=0.424 Sum_probs=54.3
Q ss_pred cEEEEEEEEcCCccCCC-ccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEE
Q 027381 94 GISAFRIDYAPYGQRPP-HIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAA 172 (224)
Q Consensus 94 gis~a~v~l~pgg~~~p-H~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~ 172 (224)
.++...++|+|++.-++ +.+ +..-++||++|.+++.+. +. +..+.+|+++.+|+|-...++|.++++|.+
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~-~~~~vF~V~~G~v~Vti~------~~--~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~L 81 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSR-DNTMVFYVIKGKVEVTIH------ET--SFVVTKGGSFQVPRGNYYSIKNIGNEEAKL 81 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE---SEEEEEEEEESEEEEEET------TE--EEEEETT-EEEE-TT-EEEEEE-SSS-EEE
T ss_pred CceeEEEEeCCCCccCCcccC-CcEEEEEEEeCEEEEEEc------Cc--EEEEeCCCEEEECCCCEEEEEECCCCcEEE
Confidence 46788999999998665 455 558899999999999983 23 469999999999999999999999999988
Q ss_pred EEE
Q 027381 173 YSA 175 (224)
Q Consensus 173 i~~ 175 (224)
+-+
T Consensus 82 fF~ 84 (85)
T PF11699_consen 82 FFV 84 (85)
T ss_dssp EEE
T ss_pred EEe
Confidence 743
No 28
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.37 E-value=1.7e-06 Score=73.87 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=61.9
Q ss_pred EEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEE
Q 027381 95 ISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYS 174 (224)
Q Consensus 95 is~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~ 174 (224)
..+..+.++||+..|.|.|.+ .|+.+|++|+.. ++. ..+.+||++..|.|..|...+.+++++++++
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~G-~E~tlVLeG~f~----de~--------g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~ 193 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHKG-FELTLVLHGAFS----DET--------GVYGVGDFEEADGSVQHQPRTVSGGDCLCLA 193 (215)
T ss_pred cEEEEEEECCCCccCCCcCCC-cEEEEEEEEEEE----cCC--------CccCCCeEEECCCCCCcCcccCCCCCeEEEE
Confidence 456788899999999999965 899999999953 322 3789999999999999999999989999999
Q ss_pred EecCC
Q 027381 175 ALNSQ 179 (224)
Q Consensus 175 ~~~s~ 179 (224)
+.+..
T Consensus 194 v~dap 198 (215)
T TIGR02451 194 VLDAP 198 (215)
T ss_pred EecCC
Confidence 88754
No 29
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.36 E-value=1.9e-06 Score=65.56 Aligned_cols=64 Identities=28% Similarity=0.352 Sum_probs=45.3
Q ss_pred CCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEEe
Q 027381 104 PYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSAL 176 (224)
Q Consensus 104 pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~~ 176 (224)
++-..++|+|+. -|+.||++|++++.+. ++ ...+++||++++|+|.+|.....++++...+.+.
T Consensus 12 ~~~~~~~h~h~~-~~i~~v~~G~~~~~~~------~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~ 75 (136)
T PF02311_consen 12 PNFEFPPHWHDF-YEIIYVLSGEGTLHID------GQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY 75 (136)
T ss_dssp TT-SEEEETT-S-EEEEEEEEE-EEEEET------TE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred CCCccCCEECCC-EEEEEEeCCEEEEEEC------CE--EEEEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence 445668999986 9999999999999762 45 3699999999999999999988777676665544
No 30
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.35 E-value=4.5e-06 Score=68.03 Aligned_cols=71 Identities=24% Similarity=0.323 Sum_probs=50.3
Q ss_pred cCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEEecCCCCc
Q 027381 107 QRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPG 182 (224)
Q Consensus 107 ~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~~~s~~pg 182 (224)
....|.|.+ .|+-|+++|++.+.+...+ ++.....+++||.+++|+|..||+.-..+....++=.|. ..||
T Consensus 84 f~~EH~H~d-eEvR~i~~G~g~Fdvr~~~---~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~-~~~g 154 (157)
T PF03079_consen 84 FFEEHTHED-EEVRYIVDGSGYFDVRDGD---DVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK-DEPG 154 (157)
T ss_dssp HCS-EEESS--EEEEEEECEEEEEEE-TT---CEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES-SCGG
T ss_pred hheeEecCh-heEEEEeCcEEEEEEEcCC---CEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec-CCCC
Confidence 456899987 9999999999999998654 554457999999999999999999755455566665553 4444
No 31
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.34 E-value=1.6e-06 Score=63.97 Aligned_cols=66 Identities=27% Similarity=0.351 Sum_probs=52.1
Q ss_pred cEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEE
Q 027381 94 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAY 173 (224)
Q Consensus 94 gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i 173 (224)
+..+..+.++||+..|.|.|+. .|.+|||+|++.. . +. .+.+||.+..|+|..|.... ++.|+++
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~g-~ee~~VLeG~~~d----~----~~----~~~~G~~~~~p~g~~h~~~s--~~gc~~~ 87 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHPG-GEEILVLEGELSD----G----DG----RYGAGDWLRLPPGSSHTPRS--DEGCLIL 87 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEESS--EEEEEEECEEEE----T----TC----EEETTEEEEE-TTEEEEEEE--SSCEEEE
T ss_pred cCEEEEEEECCCCCcCccCCCC-cEEEEEEEEEEEE----C----Cc----cCCCCeEEEeCCCCccccCc--CCCEEEE
Confidence 5678888999999999999986 7888999999984 2 22 56999999999999999874 5667766
Q ss_pred E
Q 027381 174 S 174 (224)
Q Consensus 174 ~ 174 (224)
.
T Consensus 88 v 88 (91)
T PF12973_consen 88 V 88 (91)
T ss_dssp E
T ss_pred E
Confidence 4
No 32
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.29 E-value=3.2e-06 Score=75.29 Aligned_cols=61 Identities=18% Similarity=0.119 Sum_probs=49.7
Q ss_pred EEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCC
Q 027381 98 FRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGK 167 (224)
Q Consensus 98 a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 167 (224)
+.-.-.|..|.++|||.+ -|+.|+++|++.+.+. ++ ...+++||+++||.|.+|.....++
T Consensus 29 ~~~~~~~~~m~~~HwH~e-~Ei~yv~~G~~~~~i~------g~--~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 29 EIEFRPPHIMPTSHWHGQ-VEVNVPFDGDVEYLIN------NE--KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EEEeeCCCCCCCCCcccc-EEEEEecCCcEEEEEC------CE--EEEEcCCcEEEEecCCcccccccCC
Confidence 334456778899999987 9999999999988762 45 3699999999999999998765444
No 33
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.26 E-value=9.5e-06 Score=69.59 Aligned_cols=70 Identities=20% Similarity=0.119 Sum_probs=49.2
Q ss_pred EEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEE
Q 027381 95 ISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYS 174 (224)
Q Consensus 95 is~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~ 174 (224)
++...+.++. ... +||.+..|+.||++|++++.+. ++ ++.+++||+++||+|..|.+...+ .+.++.
T Consensus 157 m~aGf~~~~~-~sf--~wtl~~dEi~YVLEGe~~l~Id------G~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRfly 223 (233)
T PRK15457 157 MAAGFMQWEN-AFF--PWTLNYDEIDMVLEGELHVRHE------GE--TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLY 223 (233)
T ss_pred eeeEEEEEec-Ccc--ceeccceEEEEEEEeEEEEEEC------CE--EEEeCCCcEEEECCCCeEEecCCC--CeeEEE
Confidence 4455555554 333 4666678999999999999873 45 469999999999999995554433 555555
Q ss_pred Eec
Q 027381 175 ALN 177 (224)
Q Consensus 175 ~~~ 177 (224)
+..
T Consensus 224 V~~ 226 (233)
T PRK15457 224 VAW 226 (233)
T ss_pred EEe
Confidence 443
No 34
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.13 E-value=2.4e-05 Score=64.06 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=59.2
Q ss_pred CCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEEecCCCCcceec
Q 027381 109 PPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTI 186 (224)
Q Consensus 109 ~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~~~s~~pg~~~~ 186 (224)
.-|.|.+ .|+-|++.|.+.+.+...+ ++.+...+.+||.+.+|+|.-||+--..+-..+++=.| ...+|.+.+
T Consensus 89 ~EH~H~d-~EvRy~vaG~GiF~v~~~d---~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF-~~~~gWVa~ 161 (181)
T COG1791 89 QEHLHTD-DEVRYFVAGEGIFDVHSPD---GKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLF-TEPEGWVAI 161 (181)
T ss_pred HHhccCC-ceEEEEEecceEEEEECCC---CcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEe-eCCCCceee
Confidence 4699976 9999999999999998876 78889999999999999999999965545556665445 356776653
No 35
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.00 E-value=2.1e-05 Score=62.28 Aligned_cols=67 Identities=24% Similarity=0.297 Sum_probs=52.7
Q ss_pred CccCC-CccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEEec
Q 027381 105 YGQRP-PHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALN 177 (224)
Q Consensus 105 gg~~~-pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~~~ 177 (224)
|++.+ -|+|.++.|++.|++|+..+.+...+ +. +..+++||++++|+|+-|.- +....+..++.++.
T Consensus 52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~---G~--el~v~~GDvlliPAGvGH~r-l~sS~DF~VvGaYp 119 (163)
T COG4297 52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGAD---GQ--ELEVGEGDVLLIPAGVGHCR-LHSSADFQVVGAYP 119 (163)
T ss_pred ccccccccccCCcceEEEEecceeEEEecCCC---Cc--eeeecCCCEEEEecCccccc-ccCCCCeEEEcccC
Confidence 45444 68999999999999999999997665 44 35999999999999999975 44455666666553
No 36
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=97.98 E-value=5.8e-05 Score=65.76 Aligned_cols=52 Identities=29% Similarity=0.358 Sum_probs=43.0
Q ss_pred CccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEec
Q 027381 105 YGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNI 165 (224)
Q Consensus 105 gg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~ 165 (224)
+...++|||.. .|++||++|++++.+. ++. ..+++||++++|+|..|.....
T Consensus 33 ~~~~~~H~H~~-~ei~~v~~G~~~~~i~------~~~--~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHDY-YEFTLVLTGRYYQEIN------GKR--VLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCccccc-EEEEEEEeceEEEEEC------CEE--EEECCCcEEEeCCCCccceeee
Confidence 33568999975 9999999999998872 453 6999999999999999976443
No 37
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.95 E-value=7.3e-05 Score=59.07 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=52.7
Q ss_pred CceEEEeccCCCCCcccccEEEEEE-EEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCC-EEE
Q 027381 76 GVDETDANVEQIPGLNTLGISAFRI-DYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGD-VFV 153 (224)
Q Consensus 76 g~~v~~~~~~~~P~l~~~gis~a~v-~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GD-v~~ 153 (224)
.|.++.+...+-....- -.+..+ ..++|-...+|.|....|+++|++|+..+.+.+.. .+ ....|...+ .+.
T Consensus 15 RG~L~~~e~~~~ipf~i--~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~---~~-~~~~L~~~~~~L~ 88 (131)
T PF05523_consen 15 RGSLSVIERFDDIPFEI--KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGR---EE-EEFILDEPNKGLY 88 (131)
T ss_dssp TEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS----E-EEEEE--TTEEEE
T ss_pred CCcEEEEeccCCCCCCc--cEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCC---Cc-EEEEECCCCeEEE
Confidence 44566665553222221 123333 23444458999999999999999999999986643 22 356777665 899
Q ss_pred ECCCCeeEEEecCCCcEEEEEEecCC
Q 027381 154 FPQGLIHFQFNIGKTNAAAYSALNSQ 179 (224)
Q Consensus 154 ~P~G~~H~~~N~g~~~a~~i~~~~s~ 179 (224)
+|+|+.|.+.|.+.+ +++++ +.+.
T Consensus 89 Ippg~w~~~~~~s~~-svlLv-~as~ 112 (131)
T PF05523_consen 89 IPPGVWHGIKNFSED-SVLLV-LASE 112 (131)
T ss_dssp E-TT-EEEEE---TT--EEEE-EESS
T ss_pred ECCchhhHhhccCCC-cEEEE-EcCC
Confidence 999999999999877 66664 5554
No 38
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.94 E-value=3.4e-05 Score=67.80 Aligned_cols=62 Identities=19% Similarity=0.172 Sum_probs=48.0
Q ss_pred EEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCC
Q 027381 95 ISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGK 167 (224)
Q Consensus 95 is~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 167 (224)
+.+.+ ..+....++|||+. .|++||++|++++.+. ++ ...+++||+++||+|.+|.+...++
T Consensus 20 ~~~~~--~~~~~~~~~H~H~~-~ei~~i~~G~~~~~i~------~~--~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 20 VAVTN--RYPQETFVEHTHQF-CEIVIVWRGNGLHVLN------DH--PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred eEEec--CCCCCCCccccccc-eeEEEEecCceEEEEC------Ce--eeeecCCeEEEEcCCCcccccccCC
Confidence 44444 23344567999975 9999999999999872 44 3699999999999999999875443
No 39
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.91 E-value=3.2e-05 Score=70.12 Aligned_cols=75 Identities=21% Similarity=0.200 Sum_probs=62.3
Q ss_pred EEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEE
Q 027381 95 ISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYS 174 (224)
Q Consensus 95 is~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~ 174 (224)
|.+..-.+.||...++|-|.. .-+.+|++|++....++ ++ ...+++||+|+.|.+..|...|.|+++++.+.
T Consensus 81 l~a~~q~l~pGe~~~~HRht~-sAl~~vveG~G~~t~V~-----g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld 152 (335)
T TIGR02272 81 LYAGLQLILPGEVAPSHRHTQ-SALRFIVEGKGAFTAVD-----GE--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLD 152 (335)
T ss_pred HHhhhEEeCCCCCCCcccccc-ceEEEEEEcCceEEEEC-----CE--EEeeeCCCEEEeCCCeeEecccCCCCcEEEEe
Confidence 455556689999999999965 89999999999655554 44 36999999999999999999999999977765
Q ss_pred Eec
Q 027381 175 ALN 177 (224)
Q Consensus 175 ~~~ 177 (224)
+++
T Consensus 153 ~lD 155 (335)
T TIGR02272 153 GLD 155 (335)
T ss_pred cCC
Confidence 554
No 40
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=97.84 E-value=0.00025 Score=55.41 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=70.9
Q ss_pred cccEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEE
Q 027381 92 TLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAA 171 (224)
Q Consensus 92 ~~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~ 171 (224)
+.|+|+-.-.+.+|.-...|+-.. -|-+|+++|++++.-.+. ++. ..+++|.+....+...|+.+.. ++..
T Consensus 32 gmGFS~h~T~i~aGtet~~~YknH-lEAvyci~G~Gev~~~~~----G~~--~~i~pGt~YaLd~hD~H~lra~--~dm~ 102 (126)
T PF06339_consen 32 GMGFSFHETTIYAGTETHIHYKNH-LEAVYCIEGEGEVEDLDT----GEV--HPIKPGTMYALDKHDRHYLRAK--TDMR 102 (126)
T ss_pred CCCEEEEEEEEeCCCeeEEEecCc-eEEEEEEeceEEEEEccC----CcE--EEcCCCeEEecCCCccEEEEec--CCEE
Confidence 568999999999999999988754 999999999999987643 453 6999999999999999999764 4999
Q ss_pred EEEEecCCCCcc
Q 027381 172 AYSALNSQFPGE 183 (224)
Q Consensus 172 ~i~~~~s~~pg~ 183 (224)
++++||.+--|.
T Consensus 103 ~vCVFnPpltG~ 114 (126)
T PF06339_consen 103 LVCVFNPPLTGR 114 (126)
T ss_pred EEEEcCCCCcCc
Confidence 999999765554
No 41
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.82 E-value=6.3e-05 Score=65.60 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=47.4
Q ss_pred CccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEE
Q 027381 105 YGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAA 172 (224)
Q Consensus 105 gg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~ 172 (224)
+...++|||.+.-|++|+++|++++.+. ++ ...+++||++++|+|..|.....++....+
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~------~~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~ 92 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQLD------EH--EYSEYAPCFFLTPPSVPHGFVTDLDADGHV 92 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEEC------CE--EEEecCCeEEEeCCCCccccccCCCcceEE
Confidence 4568999997558999999999998762 45 369999999999999999886655444333
No 42
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.81 E-value=8.8e-05 Score=66.21 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=45.2
Q ss_pred CCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCC
Q 027381 104 PYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGK 167 (224)
Q Consensus 104 pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 167 (224)
|....++|||+. -|++||++|++.+.+. ++ ...+++||+++||+|.+|.+....+
T Consensus 57 ~~~~~~~H~H~~-~el~~v~~G~g~~~v~------~~--~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 57 PQDVFAEHTHDF-CELVIVWRGNGLHVLN------DR--PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCccccce-EEEEEEEcCeEEEEEC------CE--EEeecCCeEEEECCCCeecccccCC
Confidence 344578999975 9999999999998763 44 3699999999999999998876444
No 43
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.78 E-value=3.8e-05 Score=62.49 Aligned_cols=55 Identities=33% Similarity=0.488 Sum_probs=47.8
Q ss_pred cCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEec
Q 027381 107 QRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNI 165 (224)
Q Consensus 107 ~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~ 165 (224)
....|.|++ +|+-||++|++.+-+-+.+ ++-+..-+++||.+++|+|+-|.+.-.
T Consensus 85 FfEEhlh~d-eeiR~il~GtgYfDVrd~d---d~WIRi~vekGDlivlPaGiyHRFTtt 139 (179)
T KOG2107|consen 85 FFEEHLHED-EEIRYILEGTGYFDVRDKD---DQWIRIFVEKGDLIVLPAGIYHRFTTT 139 (179)
T ss_pred HHHHhcCch-hheEEEeecceEEeeccCC---CCEEEEEEecCCEEEecCcceeeeecC
Confidence 457899988 9999999999999987766 676778899999999999999988543
No 44
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.76 E-value=4.9e-05 Score=67.44 Aligned_cols=92 Identities=22% Similarity=0.173 Sum_probs=76.1
Q ss_pred EEEeccCCCCCccccc-----EEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEE
Q 027381 79 ETDANVEQIPGLNTLG-----ISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFV 153 (224)
Q Consensus 79 v~~~~~~~~P~l~~~g-----is~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~ 153 (224)
+..+-.-..|+|++.. +....--|.||-..|.|-|.. +-+-||++|++-...++. .| ..+++||++.
T Consensus 71 ~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHsq-sAlRFvveG~Ga~T~VdG----er---~~M~~GDfil 142 (351)
T COG3435 71 VRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHNQ-SALRFVVEGKGAYTVVDG----ER---TPMEAGDFIL 142 (351)
T ss_pred eeEEEEecCCCCCCcccccHHHHhhhheecCcccCCcccccc-cceEEEEeccceeEeecC----ce---eeccCCCEEE
Confidence 6677777888888764 223334568999999999976 899999999998888863 34 5999999999
Q ss_pred ECCCCeeEEEecCCCcEEEEEEecC
Q 027381 154 FPQGLIHFQFNIGKTNAAAYSALNS 178 (224)
Q Consensus 154 ~P~G~~H~~~N~g~~~a~~i~~~~s 178 (224)
.|++..|..-|.|.+|++.+-.++.
T Consensus 143 TP~w~wHdHgn~g~eP~iWlDgLDi 167 (351)
T COG3435 143 TPAWTWHDHGNEGTEPCIWLDGLDI 167 (351)
T ss_pred ccCceeccCCCCCCCceEEEcccch
Confidence 9999999999999999999877753
No 45
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.75 E-value=9e-05 Score=52.76 Aligned_cols=58 Identities=28% Similarity=0.337 Sum_probs=42.4
Q ss_pred EEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEE
Q 027381 95 ISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQ 162 (224)
Q Consensus 95 is~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~ 162 (224)
++....+..||. ...++. ..|++|||+|++++... + ++ +..+++||++++|+|..-.+
T Consensus 7 ~~~g~w~~~pg~-~~~~~~--~~E~~~vleG~v~it~~--~---G~--~~~~~aGD~~~~p~G~~~~w 64 (74)
T PF05899_consen 7 FSAGVWECTPGK-FPWPYP--EDEFFYVLEGEVTITDE--D---GE--TVTFKAGDAFFLPKGWTGTW 64 (74)
T ss_dssp EEEEEEEEECEE-EEEEES--SEEEEEEEEEEEEEEET--T---TE--EEEEETTEEEEE-TTEEEEE
T ss_pred EEEEEEEECCce-eEeeCC--CCEEEEEEEeEEEEEEC--C---CC--EEEEcCCcEEEECCCCEEEE
Confidence 556667777865 334444 38999999999999753 2 44 37999999999999986544
No 46
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.72 E-value=0.00012 Score=63.51 Aligned_cols=53 Identities=26% Similarity=0.239 Sum_probs=44.2
Q ss_pred CCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEec
Q 027381 104 PYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNI 165 (224)
Q Consensus 104 pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~ 165 (224)
+....++|||.. -|++||++|++++.+. ++ ...+++||++++|+|..|.....
T Consensus 24 ~~~~~~~H~H~~-~ei~~v~~G~~~~~i~------~~--~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 24 PQAAFPEHHHDF-HEIVIVEHGTGIHVFN------GQ--PYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred ccccccccccCc-eeEEEEecCceeeEec------CC--cccccCCcEEEECCCccchhhhc
Confidence 445578999965 9999999999999873 33 36999999999999999987654
No 47
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.65 E-value=0.0006 Score=54.83 Aligned_cols=79 Identities=18% Similarity=0.300 Sum_probs=49.1
Q ss_pred EEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEEec
Q 027381 98 FRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALN 177 (224)
Q Consensus 98 a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~~~ 177 (224)
..+.=.|+...-.|..+. .|++|-++|.+.+.+++. ++.....+++||++..|++++|.-+-.. ..+.+++-.
T Consensus 36 VmvVGGPN~R~DyHine~-eE~FyQ~kG~m~Lkv~e~----g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr 108 (151)
T PF06052_consen 36 VMVVGGPNQRTDYHINET-EEFFYQLKGDMCLKVVED----GKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIER 108 (151)
T ss_dssp EEEEESSB--SSEEE-SS--EEEEEEES-EEEEEEET----TEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE
T ss_pred EEEEcCCCCCCccccCCc-ceEEEEEeCcEEEEEEeC----CceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEe
Confidence 334456777788899975 999999999999999875 4555789999999999999999976653 444444444
Q ss_pred CCCCcc
Q 027381 178 SQFPGE 183 (224)
Q Consensus 178 s~~pg~ 183 (224)
...+|.
T Consensus 109 ~R~~~~ 114 (151)
T PF06052_consen 109 KRPEGE 114 (151)
T ss_dssp ---TTS
T ss_pred ccCCCC
Confidence 344443
No 48
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.62 E-value=0.0002 Score=62.40 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=45.1
Q ss_pred cCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCC
Q 027381 103 APYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGK 167 (224)
Q Consensus 103 ~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 167 (224)
.|.-..++|||. .-|++||++|++++.+. ++ ...+++||++++|+|.+|.....++
T Consensus 26 ~~~~~~~~H~h~-~~~l~~v~~G~~~~~i~------~~--~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 26 YPQDVFAEHTHE-FCELVMVWRGNGLHVLN------ER--PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCccccc-eEEEEEEecCcEEEEEC------CE--EEeecCCcEEEECCCCcccccccCC
Confidence 344447899997 49999999999998862 45 3699999999999999998765443
No 49
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.61 E-value=9.8e-05 Score=64.45 Aligned_cols=72 Identities=31% Similarity=0.363 Sum_probs=45.7
Q ss_pred cEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEE
Q 027381 94 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAY 173 (224)
Q Consensus 94 gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i 173 (224)
|-+..|+.+++|-..|||+|. +++-+|||+|.+..+ + .+...+.|.+|..+..|+|..|+....+.+.+.++
T Consensus 35 g~~~~~vkf~~g~~~pph~H~-~~~~~~Vi~G~~~~~--~-----~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 35 GPSGMRVKFPAGFSSPPHIHN-ADYRGTVISGELHNG--D-----PKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI 106 (251)
T ss_dssp S-EEEEEEE-TT-EE--BEES-S-EEEEEEESEEEET--T-----EE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred CcceEEEEcCCCccCCCccee-eeEEEEEEEeEEEcC--C-----CcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence 678899999999999999996 599999999987763 2 23234679999999999999999866655555444
No 50
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.58 E-value=0.00064 Score=57.95 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=63.1
Q ss_pred EEEEEEEEcCCc-cCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEE
Q 027381 95 ISAFRIDYAPYG-QRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAY 173 (224)
Q Consensus 95 is~a~v~l~pgg-~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i 173 (224)
++-..+++.|+| .-.+-.-+++.-++||++|++++.+. ++ ++.|++|+..++|+|..|...|...+++.+.
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~------G~--th~l~eggyaylPpgs~~~~~N~~~~~~rfh 132 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAE------GK--THALREGGYAYLPPGSGWTLRNAQKEDSRFH 132 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEc------Ce--EEEeccCCeEEeCCCCcceEeeccCCceEEE
Confidence 455678898876 56777788999999999999999873 45 4799999999999999999999999999887
Q ss_pred EEe
Q 027381 174 SAL 176 (224)
Q Consensus 174 ~~~ 176 (224)
..-
T Consensus 133 w~r 135 (264)
T COG3257 133 WIR 135 (264)
T ss_pred EEe
Confidence 654
No 51
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.34 E-value=0.0026 Score=52.62 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=56.8
Q ss_pred CCccCCCccCCCC-cEEEEEEecEEEEEEEecCCC---CCeEEEEEeCCC--CEEEECCCCeeEEEecCCCcEEEEE
Q 027381 104 PYGQRPPHIHPRA-SEIFLVLEGTLYVGFVTSDQL---NNTLIAKVLNKG--DVFVFPQGLIHFQFNIGKTNAAAYS 174 (224)
Q Consensus 104 pgg~~~pH~Hp~a-~Ei~~Vl~G~~~v~~~~~~~~---g~~~~~~~L~~G--Dv~~~P~G~~H~~~N~g~~~a~~i~ 174 (224)
+|-++.+|+|..- .+++.|++|++....++-..+ -++....+|.+- ..+.||+|..|.+++.+++..+++.
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~ 130 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYK 130 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEE
Confidence 8889999999987 899999999999988874422 124445677765 8999999999999999988754443
No 52
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.21 E-value=0.0018 Score=58.84 Aligned_cols=87 Identities=18% Similarity=0.073 Sum_probs=63.3
Q ss_pred CceEEEeccCCCC-CcccccEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEE
Q 027381 76 GVDETDANVEQIP-GLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 76 g~~v~~~~~~~~P-~l~~~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~ 154 (224)
|-.+.-+|..+=+ ...+++..+ -.+.+|....+|-|.. +.+++|++|+++..+. ++ +...++||+|++
T Consensus 232 g~~l~y~NP~TG~~~~pti~~~~--q~L~~G~~t~~~r~T~-s~Vf~VieG~G~s~ig------~~--~~~W~~gD~f~v 300 (335)
T TIGR02272 232 GLKLRYVNPATGGYPMPTIGAFI--QLLPKGFRTATYRSTD-ATVFCVVEGRGQVRIG------DA--VFRFSPKDVFVV 300 (335)
T ss_pred eEEEEEeCCCCCCCcchhHHHHH--hccCCCCCCCCccccc-cEEEEEEeCeEEEEEC------CE--EEEecCCCEEEE
Confidence 4456666655544 345555544 3467888899999964 8999999999999873 44 369999999999
Q ss_pred CCCCeeEEEecCCCcEEEEEE
Q 027381 155 PQGLIHFQFNIGKTNAAAYSA 175 (224)
Q Consensus 155 P~G~~H~~~N~g~~~a~~i~~ 175 (224)
|.-..|...|. ++++++.+
T Consensus 301 PsW~~~~h~a~--~da~Lf~~ 319 (335)
T TIGR02272 301 PSWHPVRFEAS--DDAVLFSF 319 (335)
T ss_pred CCCCcEecccC--CCeEEEEe
Confidence 99988877663 45665543
No 53
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.20 E-value=0.0009 Score=54.22 Aligned_cols=69 Identities=23% Similarity=0.173 Sum_probs=43.7
Q ss_pred EEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEE
Q 027381 95 ISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYS 174 (224)
Q Consensus 95 is~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~ 174 (224)
+++..++++.. +.-|.-.-+|+.||++|++.+.. + ++. ...++||+++||+|.--.+... ..+.++.
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~-~-----G~~--~~A~~GDvi~iPkGs~I~fst~--~~a~~~Y 143 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI-D-----GQT--VTAKPGDVIFIPKGSTITFSTP--DYARFFY 143 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE-T-----TEE--EEEETT-EEEE-TT-EEEEEEE--EEEEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE-C-----CEE--EEEcCCcEEEECCCCEEEEecC--CCEEEEE
Confidence 44455555553 34566667999999999999874 2 453 6999999999999987665432 3455544
Q ss_pred Ee
Q 027381 175 AL 176 (224)
Q Consensus 175 ~~ 176 (224)
+.
T Consensus 144 v~ 145 (152)
T PF06249_consen 144 VT 145 (152)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 54
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0045 Score=50.03 Aligned_cols=69 Identities=25% Similarity=0.232 Sum_probs=49.3
Q ss_pred cEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEE
Q 027381 94 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAY 173 (224)
Q Consensus 94 gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i 173 (224)
.+++...+.++ ...+|--. -+|+-||+||++.+... ++ +..-++||+++||+|.--.+--.|. +.++
T Consensus 99 ~l~aG~m~~~~-~tf~wtl~--yDe~d~VlEGrL~V~~~------g~--tv~a~aGDvifiPKgssIefst~ge--a~fl 165 (176)
T COG4766 99 RLGAGLMEMKN-TTFPWTLN--YDEIDYVLEGRLHVRID------GR--TVIAGAGDVIFIPKGSSIEFSTTGE--AKFL 165 (176)
T ss_pred ccccceeeecc-ccCcceec--ccceeEEEeeeEEEEEc------CC--eEecCCCcEEEecCCCeEEEeccce--EEEE
Confidence 35556666666 55565544 47999999999999763 33 3589999999999999876654443 5554
Q ss_pred EE
Q 027381 174 SA 175 (224)
Q Consensus 174 ~~ 175 (224)
-+
T Consensus 166 yv 167 (176)
T COG4766 166 YV 167 (176)
T ss_pred EE
Confidence 43
No 55
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.90 E-value=0.0074 Score=50.07 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=56.5
Q ss_pred cCCccCCCccCCCC---cEEEEEEecEEEEEEEecCCC---CCeEEEEEeCCCC--EEEECCCCeeEEEecCCCcEEEEE
Q 027381 103 APYGQRPPHIHPRA---SEIFLVLEGTLYVGFVTSDQL---NNTLIAKVLNKGD--VFVFPQGLIHFQFNIGKTNAAAYS 174 (224)
Q Consensus 103 ~pgg~~~pH~Hp~a---~Ei~~Vl~G~~~v~~~~~~~~---g~~~~~~~L~~GD--v~~~P~G~~H~~~N~g~~~a~~i~ 174 (224)
.+|.+..+|+|... ..++.|++|++...++|-..+ -++.....|.+++ .++||+|..|.+...+++..+.+-
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~ 130 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK 130 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence 45888999999874 689999999999988874321 2556678888876 799999999999999776444443
Q ss_pred EecCCCCcc
Q 027381 175 ALNSQFPGE 183 (224)
Q Consensus 175 ~~~s~~pg~ 183 (224)
+-+.-+|+.
T Consensus 131 ~t~~y~p~~ 139 (176)
T PF00908_consen 131 VTNYYDPED 139 (176)
T ss_dssp ESS---GGG
T ss_pred cCCccCccc
Confidence 322234554
No 56
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.84 E-value=0.0098 Score=49.38 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=58.7
Q ss_pred cCCccCCCccCC--CCcEEEEEEecEEEEEEEecCCC---CCeEEEEEeCC--CCEEEECCCCeeEEEecCCCcEEEEEE
Q 027381 103 APYGQRPPHIHP--RASEIFLVLEGTLYVGFVTSDQL---NNTLIAKVLNK--GDVFVFPQGLIHFQFNIGKTNAAAYSA 175 (224)
Q Consensus 103 ~pgg~~~pH~Hp--~a~Ei~~Vl~G~~~v~~~~~~~~---g~~~~~~~L~~--GDv~~~P~G~~H~~~N~g~~~a~~i~~ 175 (224)
.+|.+..+|.|. ....+++|++|++..-++|-..+ -++.....|.+ +..++||+|..|.+...+++ +.++-.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence 568889999983 36899999999999988885432 24555678887 66999999999999998866 444433
Q ss_pred ecC-CCCcc
Q 027381 176 LNS-QFPGE 183 (224)
Q Consensus 176 ~~s-~~pg~ 183 (224)
.+. =+|+.
T Consensus 131 ~~~~y~p~~ 139 (176)
T TIGR01221 131 CTDYYAPEY 139 (176)
T ss_pred CCCCcCccc
Confidence 332 24554
No 57
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=96.74 E-value=0.03 Score=46.23 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=57.6
Q ss_pred cEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCC-CCe----EEEEEeCCCCEEEECCCCeeEEEecC-C
Q 027381 94 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQL-NNT----LIAKVLNKGDVFVFPQGLIHFQFNIG-K 167 (224)
Q Consensus 94 gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~-g~~----~~~~~L~~GDv~~~P~G~~H~~~N~g-~ 167 (224)
.+.+..+.-.||...+.|=|.++.=++.|++|+++-.......+ +.. .....+..|...+++.+.+|.+.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 36677788999999999999876678889999988776553321 011 11345788888899999999999987 8
Q ss_pred CcEEEEEEecCC
Q 027381 168 TNAAAYSALNSQ 179 (224)
Q Consensus 168 ~~a~~i~~~~s~ 179 (224)
++++-+=++..+
T Consensus 154 ~~avSLHvYspP 165 (175)
T PF05995_consen 154 EPAVSLHVYSPP 165 (175)
T ss_dssp S-EEEEEEEES-
T ss_pred CCEEEEEEcCCC
Confidence 888888777654
No 58
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.71 E-value=0.0033 Score=48.73 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=44.4
Q ss_pred EEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEE
Q 027381 95 ISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQF 163 (224)
Q Consensus 95 is~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~ 163 (224)
+.....+..||. +|++-...|+.++|+|++++.- ++ ++ ...+++||.++||+|..=.++
T Consensus 45 ~~~GiWe~TpG~---~r~~y~~~E~chil~G~v~~T~--d~---Ge--~v~~~aGD~~~~~~G~~g~W~ 103 (116)
T COG3450 45 VETGIWECTPGK---FRVTYDEDEFCHILEGRVEVTP--DG---GE--PVEVRAGDSFVFPAGFKGTWE 103 (116)
T ss_pred eeEeEEEecCcc---ceEEcccceEEEEEeeEEEEEC--CC---Ce--EEEEcCCCEEEECCCCeEEEE
Confidence 455566666654 5667677999999999999853 22 55 369999999999999876544
No 59
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.04 E-value=0.05 Score=50.93 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=40.1
Q ss_pred CCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEEec
Q 027381 108 RPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALN 177 (224)
Q Consensus 108 ~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~~~ 177 (224)
...-.+-+++|++++-+|++++.- +- ++ ..+++||+++||+|+.+.+.-.|.....++.++.
T Consensus 138 ~~~f~NaDGD~Li~~q~G~l~l~T--e~---G~---L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E~~~ 199 (424)
T PF04209_consen 138 DRAFRNADGDELIFPQQGSLRLET--EF---GR---LDVRPGDYVVIPRGTRFRVELPGPARGYIIENFG 199 (424)
T ss_dssp SEEEEESSEEEEEEEEES-EEEEE--TT---EE---EEE-TTEEEEE-TT--EEEE-SSSEEEEEEEEES
T ss_pred CcceEcCCCCEEEEEEECCEEEEe--cC---ee---EEEcCCeEEEECCeeEEEEEeCCCceEEEEEcCC
Confidence 344457788999999999999864 32 44 4899999999999999998766433344444444
No 60
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.94 E-value=0.027 Score=50.34 Aligned_cols=64 Identities=28% Similarity=0.319 Sum_probs=53.1
Q ss_pred EcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEE
Q 027381 102 YAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSA 175 (224)
Q Consensus 102 l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~ 175 (224)
|.||-...+|-|.+ +-+.-|.+|++++.+. ++ ++..++||+|++|.=..|...|. .+++++++.
T Consensus 268 L~~Gf~~~~~r~t~-s~iy~V~eGsg~~~Ig------~~--rf~~~~~D~fvVPsW~~~~~~~g-s~da~LFsf 331 (351)
T COG3435 268 LPPGFHGKAHRHTD-STIYHVVEGSGYTIIG------GE--RFDWSAGDIFVVPSWAWHEHVNG-SEDAVLFSF 331 (351)
T ss_pred cCCcccCCceeccC-CEEEEEEecceeEEEC------CE--EeeccCCCEEEccCcceeecccC-CcceEEEec
Confidence 56777788998876 8899999999999773 45 36999999999999999998885 778877753
No 61
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=95.89 E-value=0.052 Score=46.51 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=46.0
Q ss_pred EEEEcCCccCCCccCCCCcEEEEEEe-cEEEEEEEecCCC-------------CCeEE------EEEeCCCCEEEECCCC
Q 027381 99 RIDYAPYGQRPPHIHPRASEIFLVLE-GTLYVGFVTSDQL-------------NNTLI------AKVLNKGDVFVFPQGL 158 (224)
Q Consensus 99 ~v~l~pgg~~~pH~Hp~a~Ei~~Vl~-G~~~v~~~~~~~~-------------g~~~~------~~~L~~GDv~~~P~G~ 158 (224)
.+-+.+|+..|.|.|..-.|=++..- |.+.+.+..++++ .+..+ ..+|+||+.+-+++|+
T Consensus 91 im~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~ 170 (225)
T PF07385_consen 91 IMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGI 170 (225)
T ss_dssp EEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTE
T ss_pred heeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCC
Confidence 36678999999999998888877775 5777777654410 01111 2489999999999999
Q ss_pred eeEEEecCCCcEEEEEEec
Q 027381 159 IHFQFNIGKTNAAAYSALN 177 (224)
Q Consensus 159 ~H~~~N~g~~~a~~i~~~~ 177 (224)
.|+++-.+.. +++.-++
T Consensus 171 yH~Fw~e~g~--vLigEVS 187 (225)
T PF07385_consen 171 YHWFWGEGGD--VLIGEVS 187 (225)
T ss_dssp EEEEEE-TTS--EEEEEEE
T ss_pred eeeEEecCCC--EEEEeee
Confidence 9998875444 5554443
No 62
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=95.68 E-value=0.055 Score=45.66 Aligned_cols=72 Identities=21% Similarity=0.294 Sum_probs=49.6
Q ss_pred EEEEEEcC-CccCCCccCCCCcEEEEEEecEEEEEEEecCC------------------------C--------CCeEEE
Q 027381 97 AFRIDYAP-YGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQ------------------------L--------NNTLIA 143 (224)
Q Consensus 97 ~a~v~l~p-gg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~------------------------~--------g~~~~~ 143 (224)
...+-+.+ |...++|+.+ ..-++.+++|+=++.+..+.. + ..+.+.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 44566666 5568899987 478999999999988886541 0 113567
Q ss_pred EEeCCCCEEEECCCCeeEEEecCCCc
Q 027381 144 KVLNKGDVFVFPQGLIHFQFNIGKTN 169 (224)
Q Consensus 144 ~~L~~GDv~~~P~G~~H~~~N~g~~~ 169 (224)
.+|++||+++||+|-.|+++|..+++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 89999999999999999999984444
No 63
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=95.42 E-value=0.15 Score=47.80 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=43.6
Q ss_pred CCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEE
Q 027381 108 RPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAY 173 (224)
Q Consensus 108 ~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i 173 (224)
...-.+.+++|++++-+|++++.-.- ++ ..+++||+++||+|+.+.+. ..+.++..+
T Consensus 146 ~~~f~NaDGD~Livpq~G~l~i~TEf-----G~---L~v~pgei~VIPRG~~frv~-l~~gp~rgy 202 (438)
T PRK05341 146 DRYFYNADGELLIVPQQGRLRLATEL-----GV---LDVEPGEIAVIPRGVKFRVE-LPDGPARGY 202 (438)
T ss_pred cceeecCCCCEEEEEEeCCEEEEEec-----cc---eEecCCCEEEEcCccEEEEe-cCCCCeeEE
Confidence 44556778899999999999986432 45 58999999999999998885 333455444
No 64
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=95.38 E-value=0.14 Score=47.97 Aligned_cols=62 Identities=8% Similarity=0.140 Sum_probs=46.2
Q ss_pred CCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEEec
Q 027381 108 RPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALN 177 (224)
Q Consensus 108 ~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~~~ 177 (224)
...-.+.+++|++++-+|++.+.-.- ++ ..+++||+++||+|+.+.+.-.|.....++..+.
T Consensus 140 ~~~f~NaDGD~Livpq~G~l~i~TEf-----G~---L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g 201 (429)
T TIGR01015 140 NRAFYNADGDFLIVPQQGALLITTEF-----GR---LLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG 201 (429)
T ss_pred cceeeccCCCEEEEEEeCcEEEEEec-----cc---eEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence 45556778899999999999986533 45 5999999999999999988655433344444443
No 65
>PLN02658 homogentisate 1,2-dioxygenase
Probab=95.30 E-value=0.17 Score=47.46 Aligned_cols=57 Identities=12% Similarity=0.198 Sum_probs=42.9
Q ss_pred CCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEE
Q 027381 108 RPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAY 173 (224)
Q Consensus 108 ~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i 173 (224)
...-.+.+++|++++-+|++.+.-.- ++ ..+++||+++||+|+.+.+.-. ++++..+
T Consensus 139 ~~~f~NaDGD~Livpq~G~l~i~TEf-----G~---L~v~pgei~VIPRG~~frv~l~-~gp~rgy 195 (435)
T PLN02658 139 DCAFCNADGDFLIVPQQGRLWIKTEL-----GK---LQVSPGEIVVIPRGFRFAVDLP-DGPSRGY 195 (435)
T ss_pred cceeecCCCCEEEEEEeCCEEEEEec-----cc---eEecCCCEEEecCccEEEEecC-CCCeeEE
Confidence 34456778899999999999986432 45 4899999999999999887532 3454443
No 66
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.20 E-value=0.22 Score=44.85 Aligned_cols=70 Identities=23% Similarity=0.278 Sum_probs=43.8
Q ss_pred EEEEEEEcCCc--cCCCccCCCCcEEEEEEecEEEEEEEecCC---------C------CCeEEEEEeCCCCEEEECCCC
Q 027381 96 SAFRIDYAPYG--QRPPHIHPRASEIFLVLEGTLYVGFVTSDQ---------L------NNTLIAKVLNKGDVFVFPQGL 158 (224)
Q Consensus 96 s~a~v~l~pgg--~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~---------~------g~~~~~~~L~~GDv~~~P~G~ 158 (224)
..+-+.+.|++ ...|||=.. +-+++=++|+=+..+..... + .......+|++||++++|+|.
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~~-dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~ 192 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDDH-DVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW 192 (319)
T ss_dssp EEEEEEEETSSBEESECEE-SS-EEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred cceEEEecCCCCCCccCEECCc-ccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence 34455667777 689998765 67777788876655554210 0 012346899999999999999
Q ss_pred eeEEEecC
Q 027381 159 IHFQFNIG 166 (224)
Q Consensus 159 ~H~~~N~g 166 (224)
.|.....+
T Consensus 193 ~H~~~~~~ 200 (319)
T PF08007_consen 193 WHQAVTTD 200 (319)
T ss_dssp EEEEEESS
T ss_pred cCCCCCCC
Confidence 99999887
No 67
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.04 E-value=0.12 Score=39.55 Aligned_cols=63 Identities=29% Similarity=0.277 Sum_probs=46.9
Q ss_pred CccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECC--CCeeEEEecCC-CcEEEEE
Q 027381 105 YGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQ--GLIHFQFNIGK-TNAAAYS 174 (224)
Q Consensus 105 gg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~--G~~H~~~N~g~-~~a~~i~ 174 (224)
+...++|-|.+-+-+.||++|+++-. |+. |++ .+|++||+-+.-+ |+.|...|.++ +++..+-
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~--G~~---~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQ 104 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSL--GNR---GVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQ 104 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETT--SEE---EEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCC--CCe---eEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEE
Confidence 45568999988777889999999764 554 144 5899999988876 68999999887 6777664
No 68
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=94.91 E-value=0.027 Score=49.28 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=43.6
Q ss_pred EEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEE
Q 027381 95 ISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYS 174 (224)
Q Consensus 95 is~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~ 174 (224)
+.-..+.++.|.-..+|+|+. .|-.|||+|++..+..... + ...|.+|-.+.-|.+..|... .++++++++.
T Consensus 171 ~~gll~kLPagf~g~i~~h~~-~eraVvI~G~~~~~~~~~~---~---~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyI 242 (251)
T PF14499_consen 171 YTGLLLKLPAGFTGRIHTHAS-NERAVVISGELDYQSYGAS---N---FGTLDPGSYFGSPGHITHGIF-ITEDECVLYI 242 (251)
T ss_dssp E-EEEEE-SSEE--SEEE--S--EEEEEEEEEEEETTEEEE---T---TEEEEE-TT-EE--E-------EESS-EEEEE
T ss_pred eeeEEEEcCCCCcCceeccCC-ceEEEEEEeEEEEeecccC---C---CccccCCcccccCCccccccc-ccCCCEEEEE
Confidence 445566677777789999986 9999999999998653211 2 269999999999999999998 7788998886
Q ss_pred Eec
Q 027381 175 ALN 177 (224)
Q Consensus 175 ~~~ 177 (224)
-.+
T Consensus 243 Rtd 245 (251)
T PF14499_consen 243 RTD 245 (251)
T ss_dssp EES
T ss_pred EEC
Confidence 544
No 69
>PF12852 Cupin_6: Cupin
Probab=94.46 E-value=0.2 Score=41.09 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=35.6
Q ss_pred cEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCC
Q 027381 117 SEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGK 167 (224)
Q Consensus 117 ~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 167 (224)
.-+.+|++|+.++.+.+. ++ ...|++||++++|+|..|.+....+
T Consensus 36 ~~fh~V~~G~~~l~~~~~----~~--~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGG----GE--PIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred eEEEEEECCeEEEEEcCC----CC--eEEecCCCEEEEcCCCCeEeCCCCC
Confidence 678889999999986331 23 4799999999999999999854433
No 70
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=94.26 E-value=0.28 Score=41.42 Aligned_cols=88 Identities=17% Similarity=0.129 Sum_probs=67.2
Q ss_pred CCCceEEEeccCCCCCcccccEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEE
Q 027381 74 RLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFV 153 (224)
Q Consensus 74 ~~g~~v~~~~~~~~P~l~~~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~ 153 (224)
..|+++..+...+-+ ..+++++.+.||...|-|+|-. -|...|++|... +++ + .+.+||+.-
T Consensus 112 ~~G~rv~~v~l~~dd-----s~~V~llki~~g~s~P~HtH~G-~E~t~vl~G~~s----de~---G-----~y~vgD~~~ 173 (216)
T COG3806 112 GPGGRVEPVRLPTDD-----SRRVALLKIEPGRSFPDHTHVG-IERTAVLEGAFS----DEN---G-----EYLVGDFTL 173 (216)
T ss_pred cCCcceeecccCCCC-----CceeEEEEeccCcccccccccc-eEEEEEEeeccc----cCC---C-----ccccCceee
Confidence 346656555443322 4688999999999999999975 999999999654 444 2 677999999
Q ss_pred ECCCCeeEEEecCCCcEEEEEEecCC
Q 027381 154 FPQGLIHFQFNIGKTNAAAYSALNSQ 179 (224)
Q Consensus 154 ~P~G~~H~~~N~g~~~a~~i~~~~s~ 179 (224)
-+.++-|.-.-..+.+|..++++.-+
T Consensus 174 ~d~~v~H~piv~~~~eClcl~al~~~ 199 (216)
T COG3806 174 ADGTVQHSPIVLPPGECLCLAALDGP 199 (216)
T ss_pred cCCccccccccCCCCCceEEEEcCCC
Confidence 99999998666667888888887643
No 71
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=94.02 E-value=0.17 Score=37.59 Aligned_cols=73 Identities=23% Similarity=0.249 Sum_probs=33.4
Q ss_pred EEcCCccCCCccCCCCc-EEEEEE---ecEEEEEEEecCCC---------------CCeEEEEEeCCCCEEEECCCCeeE
Q 027381 101 DYAPYGQRPPHIHPRAS-EIFLVL---EGTLYVGFVTSDQL---------------NNTLIAKVLNKGDVFVFPQGLIHF 161 (224)
Q Consensus 101 ~l~pgg~~~pH~Hp~a~-Ei~~Vl---~G~~~v~~~~~~~~---------------g~~~~~~~L~~GDv~~~P~G~~H~ 161 (224)
...+|+..++|.|+.+. --+|.+ ++...+.+.+++.. ....+....++||+++||+-+.|.
T Consensus 6 i~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H~ 85 (101)
T PF13759_consen 6 IYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWHG 85 (101)
T ss_dssp EE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEEE
T ss_pred EeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEEe
Confidence 45788999999998853 222222 22222333332210 122445788999999999999998
Q ss_pred EE-ecCCCcEEEE
Q 027381 162 QF-NIGKTNAAAY 173 (224)
Q Consensus 162 ~~-N~g~~~a~~i 173 (224)
.. |.++++-+.|
T Consensus 86 v~p~~~~~~Risi 98 (101)
T PF13759_consen 86 VPPNNSDEERISI 98 (101)
T ss_dssp E----SSS-EEEE
T ss_pred ccCcCCCCCEEEE
Confidence 74 4445444444
No 72
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=93.86 E-value=0.12 Score=38.41 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=22.3
Q ss_pred CeEEEEEeCCCCEEEECCCCeeEEEecCCC
Q 027381 139 NTLIAKVLNKGDVFVFPQGLIHFQFNIGKT 168 (224)
Q Consensus 139 ~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~ 168 (224)
-+.+..+-++||.+++|+|..|+..|.|..
T Consensus 78 i~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 78 IPVYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp S--EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred cccccceECCCCEEEECCCceEEEEeCCce
Confidence 356678999999999999999999999864
No 73
>COG1741 Pirin-related protein [General function prediction only]
Probab=93.83 E-value=0.25 Score=43.85 Aligned_cols=71 Identities=25% Similarity=0.291 Sum_probs=54.1
Q ss_pred EEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECC--CCeeEEEec--CCCcEEEEE
Q 027381 99 RIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQ--GLIHFQFNI--GKTNAAAYS 174 (224)
Q Consensus 99 ~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~--G~~H~~~N~--g~~~a~~i~ 174 (224)
..++.||.-.+||-|.+-+-+.||++|+++-. |+. |++ .++++||+-..-+ |+.|.-.|. ..++...+-
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~--Gn~---~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~Q 120 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSL--GNK---GVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQ 120 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecC--Cce---eeecccceeEEcCCCceeecccCCccCCCccceee
Confidence 44588999999999998777889999998874 443 255 5999999999887 678999986 334555554
Q ss_pred Ee
Q 027381 175 AL 176 (224)
Q Consensus 175 ~~ 176 (224)
..
T Consensus 121 lW 122 (276)
T COG1741 121 LW 122 (276)
T ss_pred ee
Confidence 43
No 74
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=93.69 E-value=0.39 Score=40.70 Aligned_cols=89 Identities=21% Similarity=0.155 Sum_probs=62.4
Q ss_pred cccccEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCC---C----CCeEE-EE------EeCCCC-EEEE
Q 027381 90 LNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQ---L----NNTLI-AK------VLNKGD-VFVF 154 (224)
Q Consensus 90 l~~~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~---~----g~~~~-~~------~L~~GD-v~~~ 154 (224)
.....+++..+-+++|..+|+|=||+-+-+.-|+.|++.+.-.+--. + +.+.. .+ .-.+++ .+..
T Consensus 39 yE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~ 118 (200)
T PF07847_consen 39 YEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLY 118 (200)
T ss_pred EECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEc
Confidence 33446888999999999999999999888888999999987654210 0 00110 11 112223 5566
Q ss_pred CC--CCeeEEEecCCCcEEEEEEecCC
Q 027381 155 PQ--GLIHFQFNIGKTNAAAYSALNSQ 179 (224)
Q Consensus 155 P~--G~~H~~~N~g~~~a~~i~~~~s~ 179 (224)
|. |-+|.+.+.+ +++.++-++...
T Consensus 119 P~~ggNiH~f~a~~-~p~AflDIL~PP 144 (200)
T PF07847_consen 119 PTSGGNIHEFTALT-GPCAFLDILAPP 144 (200)
T ss_pred cCCCCeeEEEEeCC-CCeEEEEEccCC
Confidence 76 5999999987 899999888643
No 75
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=93.68 E-value=0.14 Score=43.80 Aligned_cols=58 Identities=21% Similarity=0.437 Sum_probs=47.7
Q ss_pred cCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEec
Q 027381 103 APYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNI 165 (224)
Q Consensus 103 ~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~ 165 (224)
.|+...-.|..+. .|++|=.+|.+..-+++.. +....++++||++..|+.++|.-.--
T Consensus 41 GPN~RkdyHieeg-eE~FyQ~KGdMvLKVie~g----~~rDivI~qGe~flLParVpHSPqRF 98 (279)
T KOG3995|consen 41 GPNTRKDYHIEEG-EEVFYQLKGDMVLKVLEQG----KHRDVVIRQGEIFLLPARVPHSPQRF 98 (279)
T ss_pred CCCcccccccCCc-chhheeecCceEEeeeccC----cceeeEEecCcEEEeccCCCCChhhh
Confidence 4555667888876 9999999999999998763 44468999999999999999976443
No 76
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=93.41 E-value=0.34 Score=42.30 Aligned_cols=44 Identities=25% Similarity=0.256 Sum_probs=35.2
Q ss_pred CcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCC
Q 027381 116 ASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGK 167 (224)
Q Consensus 116 a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 167 (224)
.-++.++++|++.+.. + ++ ...+++||++++|+|.+|......+
T Consensus 49 ~~~i~~~~~G~~~~~~-~-----~~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 49 GYILNLTIRGQGVIFN-G-----GR--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred ceEEEEEEeccEEEec-C-----Ce--eEecCCCCEEEECCCCceeeccCCC
Confidence 3688999999999864 2 44 3699999999999999998755443
No 77
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=92.93 E-value=0.54 Score=41.43 Aligned_cols=62 Identities=16% Similarity=0.058 Sum_probs=46.9
Q ss_pred cCCccCCCccC-CCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCC-CEEEECCCCeeEEEecC
Q 027381 103 APYGQRPPHIH-PRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKG-DVFVFPQGLIHFQFNIG 166 (224)
Q Consensus 103 ~pgg~~~pH~H-p~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~G-Dv~~~P~G~~H~~~N~g 166 (224)
-|++...+|.| +..-|.+.|++|++.+.+.++.+ .......+.+. +.-++|++.-|.+...+
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g--~~~~~~~l~~~~~~~~i~p~~wh~v~~~s 82 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDG--EELSEHIFDAENQPPFIEPQAWHRIEAAS 82 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCC--CeeeEEEEecCCCCceeCCcceEEEEEcC
Confidence 36778899999 56779999999999998877652 33334556664 56579999999987653
No 78
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=92.64 E-value=0.91 Score=39.70 Aligned_cols=67 Identities=10% Similarity=0.056 Sum_probs=45.8
Q ss_pred EEEEEEEEcCCcc-----CCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCc
Q 027381 95 ISAFRIDYAPYGQ-----RPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN 169 (224)
Q Consensus 95 is~a~v~l~pgg~-----~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~ 169 (224)
+.+.++...+... ...|.+.+.-.++++++|++.+... ++ ...+++||++++|.+.+|.+.-.++..
T Consensus 45 ~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~------g~--~~~l~~G~~~l~~~~~p~~~~~~~~~~ 116 (302)
T PRK09685 45 LKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQD------DR--QVQLAAGDITLIDASRPCSIYPQGLSE 116 (302)
T ss_pred EEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEEC------Ce--EEEEcCCCEEEEECCCCcEeecCCCce
Confidence 5566666555432 1234454555678889999998752 45 359999999999999999876544433
No 79
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.54 E-value=0.083 Score=50.05 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=57.1
Q ss_pred CCCceEEEeccCCCCC--------cccc-c-EEEEEEEEc-CCc-cCCCccCCCCcEEEEEEecEEEEEEEecCC-----
Q 027381 74 RLGVDETDANVEQIPG--------LNTL-G-ISAFRIDYA-PYG-QRPPHIHPRASEIFLVLEGTLYVGFVTSDQ----- 136 (224)
Q Consensus 74 ~~g~~v~~~~~~~~P~--------l~~~-g-is~a~v~l~-pgg-~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~----- 136 (224)
..|-++...+..+|-. |+.. | +.-+-+.|. ||+ -.+|||-.- +-+++=++|+=+..+..+..
T Consensus 285 q~~cSiqllnPqty~drlwq~cevlqeqFgc~vGaNvYLTPagSqGfaPHyDdI-eaFvlQvEGrK~Wrly~P~~~~eel 363 (629)
T KOG3706|consen 285 QKGCSIQLLNPQTYKDRLWQICEVLQEQFGCLVGANVYLTPAGSQGFAPHYDDI-EAFVLQVEGRKHWRLYHPTVPLEEL 363 (629)
T ss_pred hcCceEEeeCchhHHHHHHHHHHHHHHHhccccccceeecCCCCCCCCCchhhh-hhhhheeccceeeEeecCCCcHhhh
Confidence 3466677777665532 1110 1 222334444 444 489999853 66677889986665554331
Q ss_pred ------C------CCeEEEEEeCCCCEEEECCCCeeEEEec
Q 027381 137 ------L------NNTLIAKVLNKGDVFVFPQGLIHFQFNI 165 (224)
Q Consensus 137 ------~------g~~~~~~~L~~GDv~~~P~G~~H~~~N~ 165 (224)
+ |..++...|++||+++||+|.+|.....
T Consensus 364 ~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t~ 404 (629)
T KOG3706|consen 364 ALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADTP 404 (629)
T ss_pred hhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeecccc
Confidence 0 3445677899999999999999987543
No 80
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=92.07 E-value=0.71 Score=37.53 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=46.3
Q ss_pred cCCCCCccc-cc-EEEEEEEEcCCccCCCccCCCCcE----EEEEE-ecEEEEEEEecCCCCCeEEEEEeCCCCEEEECC
Q 027381 84 VEQIPGLNT-LG-ISAFRIDYAPYGQRPPHIHPRASE----IFLVL-EGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQ 156 (224)
Q Consensus 84 ~~~~P~l~~-~g-is~a~v~l~pgg~~~pH~Hp~a~E----i~~Vl-~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~ 156 (224)
.+++|...+ .. ..+....+.||+.+.||.-+.... +-+++ .+...+.+ +++ +...++|++++|.-
T Consensus 67 l~~lp~~~~~~~~~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v------~~~--~~~w~~G~~~~fD~ 138 (163)
T PF05118_consen 67 LEQLPGVTGGCPLGRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRV------GGE--TRHWREGECWVFDD 138 (163)
T ss_dssp CCCSHHHHCSTTCEEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEE------TTE--EEB--CTEEEEE-T
T ss_pred HHhCcccccccchhhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEE------CCe--EEEeccCcEEEEeC
Confidence 345555443 22 234445679999999998765322 11122 12233332 144 36889999999999
Q ss_pred CCeeEEEecCCCcEEEE
Q 027381 157 GLIHFQFNIGKTNAAAY 173 (224)
Q Consensus 157 G~~H~~~N~g~~~a~~i 173 (224)
...|...|.|+++-+.+
T Consensus 139 s~~H~~~N~~~~~Rv~L 155 (163)
T PF05118_consen 139 SFEHEVWNNGDEDRVVL 155 (163)
T ss_dssp TS-EEEEESSSS-EEEE
T ss_pred CEEEEEEeCCCCCEEEE
Confidence 99999999998775554
No 81
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=91.69 E-value=1.1 Score=38.04 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=43.6
Q ss_pred EEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEE---------EecCCC---------------CCeEEEEEeCCCCEE
Q 027381 97 AFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGF---------VTSDQL---------------NNTLIAKVLNKGDVF 152 (224)
Q Consensus 97 ~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~---------~~~~~~---------------g~~~~~~~L~~GDv~ 152 (224)
+-...+.+|+....|.|+++ +++|..++.+ .++... ........-++||++
T Consensus 98 ~W~ni~~~Gg~h~~H~Hp~~-----~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lv 172 (201)
T TIGR02466 98 AWVNILPQGGTHSPHLHPGS-----VISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVL 172 (201)
T ss_pred EeEEEcCCCCccCceECCCc-----eEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEE
Confidence 34455689999999999985 3333333322 221100 000111344899999
Q ss_pred EECCCCeeEEE-ecCCCcEEEEEEec
Q 027381 153 VFPQGLIHFQF-NIGKTNAAAYSALN 177 (224)
Q Consensus 153 ~~P~G~~H~~~-N~g~~~a~~i~~~~ 177 (224)
+||+-+.|... |.++++-+.+ +||
T Consensus 173 lFPS~L~H~v~p~~~~~~RISi-SFN 197 (201)
T TIGR02466 173 LFESWLRHEVPPNESEEERISV-SFN 197 (201)
T ss_pred EECCCCceecCCCCCCCCEEEE-EEe
Confidence 99999999864 5554444333 443
No 82
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=91.17 E-value=1.1 Score=37.72 Aligned_cols=79 Identities=23% Similarity=0.191 Sum_probs=47.5
Q ss_pred EEEEEcCCccCCCccCCCCcEEEEE-EecEEEEEEEecCC--------------CCCeE-----EEEEeCCCCEEEECCC
Q 027381 98 FRIDYAPYGQRPPHIHPRASEIFLV-LEGTLYVGFVTSDQ--------------LNNTL-----IAKVLNKGDVFVFPQG 157 (224)
Q Consensus 98 a~v~l~pgg~~~pH~Hp~a~Ei~~V-l~G~~~v~~~~~~~--------------~g~~~-----~~~~L~~GDv~~~P~G 157 (224)
-.+.+.+|...|.|.|++-.|=++= =.|++.+.+...+. +|.+. -...|+||+.+-+|+|
T Consensus 89 KiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg 168 (225)
T COG3822 89 KIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPG 168 (225)
T ss_pred eeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCC
Confidence 3456789999999999964443322 22344443332210 11111 0248999999999999
Q ss_pred CeeEEEecCCCcEEEEEEecC
Q 027381 158 LIHFQFNIGKTNAAAYSALNS 178 (224)
Q Consensus 158 ~~H~~~N~g~~~a~~i~~~~s 178 (224)
+-|+++.-+.. +++.-.++
T Consensus 169 ~~HsFwae~g~--vlvgEvSs 187 (225)
T COG3822 169 LYHSFWAEEGG--VLVGEVSS 187 (225)
T ss_pred ceeeeeecCCc--EEEEEEee
Confidence 99999875433 44444443
No 83
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=90.98 E-value=1.7 Score=38.68 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=53.9
Q ss_pred cEEEEEEEEcCCc---cCCCccCCCCcEEEEEE---ecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCC
Q 027381 94 GISAFRIDYAPYG---QRPPHIHPRASEIFLVL---EGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGK 167 (224)
Q Consensus 94 gis~a~v~l~pgg---~~~pH~Hp~a~Ei~~Vl---~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 167 (224)
.+-+....+.||+ ..|||.|++..|..+.- ++.-.+.+..+ + ++..-..++-+|+++.|+=.+|.- .|.
T Consensus 174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~-p--dETrh~~v~n~~aVisP~wsih~g--~gt 248 (276)
T PRK00924 174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGE-P--QETRHIVVHNEQAVISPSWSIHSG--VGT 248 (276)
T ss_pred cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCC-c--cceeeEEEECCCEEECCCcceecC--cCc
Confidence 4666767778998 47999999777755422 22222222111 1 232226899999999999999986 566
Q ss_pred CcEEEEEEecCCC
Q 027381 168 TNAAAYSALNSQF 180 (224)
Q Consensus 168 ~~a~~i~~~~s~~ 180 (224)
..-.||++..-+|
T Consensus 249 ~~y~fiw~m~gen 261 (276)
T PRK00924 249 SNYTFIWGMAGEN 261 (276)
T ss_pred cccEEEEEecccC
Confidence 6777777776554
No 84
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=90.79 E-value=1.2 Score=36.55 Aligned_cols=70 Identities=26% Similarity=0.315 Sum_probs=41.8
Q ss_pred EEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEe--cC----CCCCeEEEEEeCCCCEEEECCCCeeEEEecCCC
Q 027381 95 ISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVT--SD----QLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKT 168 (224)
Q Consensus 95 is~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~--~~----~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~ 168 (224)
+++..+++.||...|+|-|- ..-++=|+.|.-+-.+.. .. +++. .+.+.+|++-.-| |.+|...|.+..
T Consensus 73 ltV~~~t~~PG~~~p~HnH~-~wglVgil~G~E~n~~y~~~~~~~~~P~~q---dk~~apgeV~lSp-gdihsv~n~~sd 147 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHL-MWGLVGILWGGETNFIYPLAGEEVDEPERQ---DKFAAPGEVHLSP-GDIHSVANTGSD 147 (191)
T ss_pred EEEEEEEeCCCcccCCcccc-hheeeeeeecccccceecccCCCCCCcchh---hhhcCcceEeeCC-CCeeeecccCCC
Confidence 67899999999999999994 467777888854332221 11 1111 1345555555333 555555555544
Q ss_pred c
Q 027381 169 N 169 (224)
Q Consensus 169 ~ 169 (224)
.
T Consensus 148 r 148 (191)
T COG5553 148 R 148 (191)
T ss_pred c
Confidence 3
No 85
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.54 E-value=3.6 Score=37.91 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=44.8
Q ss_pred CccC-CCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEE
Q 027381 105 YGQR-PPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAY 173 (224)
Q Consensus 105 gg~~-~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i 173 (224)
.+|. ..-...+.+|++++-+|++++.-.- +. .++++||..+||+|.....+-.+.+ +..+
T Consensus 134 ~sm~~~~f~NADge~Livpq~G~l~l~te~-----G~---l~v~pgeiavIPRG~~frve~~~~~-~rgy 194 (427)
T COG3508 134 ESMTKRFFRNADGELLIVPQQGELRLKTEL-----GV---LEVEPGEIAVIPRGTTFRVELKDGE-ARGY 194 (427)
T ss_pred ccchhhhhhcCCCCEEEEeecceEEEEEee-----ce---EEecCCcEEEeeCCceEEEEecCCc-eEEE
Confidence 3443 5567778899999999999985432 33 6999999999999999888765444 4444
No 86
>PRK10579 hypothetical protein; Provisional
Probab=89.77 E-value=3 Score=31.13 Aligned_cols=48 Identities=21% Similarity=0.215 Sum_probs=38.2
Q ss_pred ccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEe
Q 027381 111 HIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFN 164 (224)
Q Consensus 111 H~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N 164 (224)
+.-..+.|+.-|++|++++.+-.+ .. ++.+++|+.|.+|++.--.++.
T Consensus 36 ~F~T~~~E~MeivsG~l~V~Lpg~----~e--w~~~~aG~sF~VpanssF~l~v 83 (94)
T PRK10579 36 TFSTAEPEEMTVISGALNVLLPGA----TD--WQVYEAGEVFNVPGHSEFHLQV 83 (94)
T ss_pred EEcCCCcEEEEEEeeEEEEECCCC----cc--cEEeCCCCEEEECCCCeEEEEE
Confidence 444457899999999999988432 22 5899999999999998776655
No 87
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=89.63 E-value=3.7 Score=30.68 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=37.1
Q ss_pred EcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEe
Q 027381 102 YAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFN 164 (224)
Q Consensus 102 l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N 164 (224)
+.||. .+....+.|++-|++|++++.+-++ .. ++.+++|+.|.+|++.--.++-
T Consensus 30 m~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~----~e--w~~~~aGesF~VpanssF~v~v 83 (94)
T PF06865_consen 30 MLPGE---YTFGTSAPERMEVVSGELEVKLPGE----DE--WQTYSAGESFEVPANSSFDVKV 83 (94)
T ss_dssp E-SEC---EEEEESS-EEEEEEESEEEEEETT-----SS---EEEETT-EEEE-TTEEEEEEE
T ss_pred EeeeE---EEEcCCCCEEEEEEEeEEEEEcCCC----cc--cEEeCCCCeEEECCCCeEEEEE
Confidence 44554 3444557899999999999988432 22 5899999999999998877765
No 88
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=89.28 E-value=2.4 Score=39.41 Aligned_cols=59 Identities=10% Similarity=0.094 Sum_probs=41.2
Q ss_pred cEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEE
Q 027381 94 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQF 163 (224)
Q Consensus 94 gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~ 163 (224)
.+.+.++++..+. .+...+..++++|++|++++.. + +. +..|++|+++++|++......
T Consensus 320 ~F~~~~~~l~~~~---~~~~~~~~~Illv~~G~~~i~~-~-----~~--~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQP---TTLSQQSAAILFCVEGEAVLWK-G-----EQ--QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCce---EEecCCCcEEEEEEcceEEEEe-C-----Ce--EEEECCCCEEEEeCCCccEEE
Confidence 3566666665542 2222345799999999999853 1 33 358999999999998876654
No 89
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=89.09 E-value=2 Score=37.07 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=54.1
Q ss_pred cccEEEEEEEEcCCccCCC-ccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcE
Q 027381 92 TLGISAFRIDYAPYGQRPP-HIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNA 170 (224)
Q Consensus 92 ~~gis~a~v~l~pgg~~~p-H~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a 170 (224)
..++-+..+.++||+.+|. -+|-- +-=+||++|++...+. +. ...+++||.+..-+-.+.+-+..|....
T Consensus 179 r~Dmhv~ivsFePGa~ip~aEtHvm-EHGlyvLeGk~vYrLn------~d--wv~V~aGD~mwm~A~cpQacyagG~g~f 249 (264)
T COG3257 179 RFDMHVHIVSFEPGASIPYAETHVM-EHGLYVLEGKGVYRLN------NN--WVPVEAGDYIWMGAYCPQACYAGGRGAF 249 (264)
T ss_pred CcceEEEEEEecCCcccchhhhhhh-hcceEEEecceEEeec------Cc--eEEeecccEEEeeccChhhhccCCCCce
Confidence 3468899999999998773 44532 4458999999999873 22 4699999999999888887777666543
Q ss_pred EE
Q 027381 171 AA 172 (224)
Q Consensus 171 ~~ 172 (224)
..
T Consensus 250 rY 251 (264)
T COG3257 250 RY 251 (264)
T ss_pred EE
Confidence 33
No 90
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=88.75 E-value=7.3 Score=34.28 Aligned_cols=97 Identities=20% Similarity=0.253 Sum_probs=50.7
Q ss_pred eEEEeccCCCCCcccccEEEEEEEEcCCc---cCCCccCCCC--------cEEEEEE----ecEEEEEEEecCCCCCeEE
Q 027381 78 DETDANVEQIPGLNTLGISAFRIDYAPYG---QRPPHIHPRA--------SEIFLVL----EGTLYVGFVTSDQLNNTLI 142 (224)
Q Consensus 78 ~v~~~~~~~~P~l~~~gis~a~v~l~pgg---~~~pH~Hp~a--------~Ei~~Vl----~G~~~v~~~~~~~~g~~~~ 142 (224)
.|......+.+... .+-+..+. .|+| ..|||.|++. +|+.|.. +|-+...+....+..++
T Consensus 136 ~V~~~i~~~~~~~~--~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~-- 210 (261)
T PF04962_consen 136 TVRNIIDPNVPPAS--RLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDE-- 210 (261)
T ss_dssp EEEEEESTTT---S--S-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEE--
T ss_pred EEEEeeCCCCcccc--eEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcE--
Confidence 45555444444222 35566655 6665 4799999873 4555542 24444333332221133
Q ss_pred EEEeCCCCEEEECCCCeeEEEecCCCcEEEEEEecCCC
Q 027381 143 AKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQF 180 (224)
Q Consensus 143 ~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~~~s~~ 180 (224)
...++-||++.+|+| .|-+...--....++.++...+
T Consensus 211 ~~~V~~~d~V~iP~g-yHp~~aapGy~~Yylw~maG~~ 247 (261)
T PF04962_consen 211 HYVVRNGDAVLIPSG-YHPVVAAPGYDMYYLWVMAGEN 247 (261)
T ss_dssp EEEEETTEEEEESTT-B-SEEEEEESSEEEEEEEESSS
T ss_pred EEEEECCCEEEeCCC-CCCcCcCCCcCcEEEEEEEcCC
Confidence 468999999999999 3333222223455777776666
No 91
>PLN02288 mannose-6-phosphate isomerase
Probab=88.46 E-value=1.5 Score=40.92 Aligned_cols=58 Identities=22% Similarity=0.274 Sum_probs=39.9
Q ss_pred cEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCC
Q 027381 94 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGL 158 (224)
Q Consensus 94 gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~ 158 (224)
.+++.++++.++.......+ +..++++|++|++++... +......|++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~~------~~~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLSTG------SSEDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEecC------CccceEEEeceeEEEEeCCC
Confidence 57778888877753222112 347999999999998531 22112579999999999864
No 92
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=88.19 E-value=2.7 Score=38.76 Aligned_cols=75 Identities=19% Similarity=0.198 Sum_probs=50.4
Q ss_pred cEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEE
Q 027381 94 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAY 173 (224)
Q Consensus 94 gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i 173 (224)
.+.+.+++++.|...-.-.- +..-++.|++|++++...+ . . ...+++||+++||+...-.+ +..+++...+
T Consensus 332 eF~v~~~~v~~g~~~~~~~~-~~~SIllv~~G~g~l~~~t-~---~---~~~v~rG~V~fI~a~~~i~~-~~~sd~~~~y 402 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGV-DGPSILLVLKGSGILKTDT-D---S---KILVNRGDVLFIPANHPIHL-SSSSDPFLGY 402 (411)
T ss_pred ceeEEEeecCCCceEEeecC-CCceEEEEEecceEEecCC-C---C---ceeeccCcEEEEcCCCCcee-eccCcceeee
Confidence 46777788887654322223 3478999999999987532 1 2 36999999999999887644 3345555555
Q ss_pred EEec
Q 027381 174 SALN 177 (224)
Q Consensus 174 ~~~~ 177 (224)
-++.
T Consensus 403 rAf~ 406 (411)
T KOG2757|consen 403 RAFS 406 (411)
T ss_pred eccc
Confidence 4443
No 93
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=87.80 E-value=5.6 Score=28.88 Aligned_cols=62 Identities=15% Similarity=-0.014 Sum_probs=41.5
Q ss_pred CccCCCccCCC-CcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCC
Q 027381 105 YGQRPPHIHPR-ASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGK 167 (224)
Q Consensus 105 gg~~~pH~Hp~-a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 167 (224)
.++...|.-.. .-..+.|++|++.+...++.++ .-.....+.+|+..+|++...|.+.-.++
T Consensus 13 ~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~-~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 13 AALLERHNTKAGTWGKLRVLEGELKFYGLDEEGE-EPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT--SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred HHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCC-ceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 34455563322 2256789999999998876421 11124689999999999999999988765
No 94
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=87.40 E-value=2.5 Score=31.54 Aligned_cols=67 Identities=21% Similarity=0.216 Sum_probs=42.2
Q ss_pred EEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEE
Q 027381 98 FRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSA 175 (224)
Q Consensus 98 a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~ 175 (224)
..+.++||+.......+...=++||++|++.+. . .+ ..+.+|+++++..|..=.+.+.+ +.+.++..
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~---~----~~---~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll 68 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG---G----EE---DPLEAGQLVVLEDGDEIELTAGE-EGARFLLL 68 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET---T----TT---EEEETTEEEEE-SECEEEEEESS-SSEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC---C----Cc---ceECCCcEEEECCCceEEEEECC-CCcEEEEE
Confidence 457788888654333333467899999998762 1 22 47999999999976666666653 66666543
No 95
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=87.17 E-value=5.6 Score=35.42 Aligned_cols=59 Identities=25% Similarity=0.352 Sum_probs=41.6
Q ss_pred cEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEE
Q 027381 94 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQF 163 (224)
Q Consensus 94 gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~ 163 (224)
.+.+.++++...... .......+++|++|++++.. . +. +..|++|+.+++|++......
T Consensus 234 ~F~~~~~~~~~~~~~---~~~~~~~il~v~~G~~~i~~--~----~~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 234 YFSVYKWDISGKAEF---IQQQSALILSVLEGSGRIKS--G----GK--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CeEEEEEEeCCceee---ccCCCcEEEEEEcceEEEEE--C----CE--EEEEecccEEEEccCCccEEE
Confidence 577788877643211 12235789999999999853 1 33 368999999999999866554
No 96
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=86.57 E-value=8.3 Score=32.54 Aligned_cols=125 Identities=15% Similarity=0.105 Sum_probs=75.0
Q ss_pred cEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEE
Q 027381 94 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAY 173 (224)
Q Consensus 94 gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i 173 (224)
+.......+++|...-..-. .+..+++|++|.+.+...+++ |++.....+.+||++-+..+..+...-.-.+++.++
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd-~~~~ly~I~~G~vkl~~~~~~--G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~ 111 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGE-PADYVYQVESGAVRTYRLLSD--GRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVR 111 (230)
T ss_pred cceeeeEEECCCCEEECCCC-CCCeEEEEEeCEEEEEEECCC--CcEEEEEEecCCceecccCCCcCCeEEEEcCceEEE
Confidence 45566677888876443322 357899999999999877665 245555677999998776655443222223455444
Q ss_pred EEec-------CCCCccee----------------------------chhhhh------cC----CCCCCHHHHHhhcCC
Q 027381 174 SALN-------SQFPGEVT----------------------------IADTVF------GA----NPSINPDFLGKAFQL 208 (224)
Q Consensus 174 ~~~~-------s~~pg~~~----------------------------~~~~lf------~~----~p~~~~~vla~~f~~ 208 (224)
.+-. ..+|.... ++..+. +. .-+++.+-||...|+
T Consensus 112 ~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~g~~~~i~i~lt~~~IA~~lGi 191 (230)
T PRK09391 112 LIKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVAAFLLEMDERLGGAGMMALPMSRRDIADYLGL 191 (230)
T ss_pred EEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCEEEecCCHHHHHHHHCC
Confidence 2211 12343211 111111 10 113678899999999
Q ss_pred CHHHHHHHhhhhc
Q 027381 209 DPKIVKDLQNKFI 221 (224)
Q Consensus 209 d~~~v~~l~~~~~ 221 (224)
..+++.++.+++.
T Consensus 192 sretlsR~L~~L~ 204 (230)
T PRK09391 192 TIETVSRALSQLQ 204 (230)
T ss_pred CHHHHHHHHHHHH
Confidence 9999888776654
No 97
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=86.46 E-value=2.3 Score=29.18 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=40.5
Q ss_pred EEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEe
Q 027381 100 IDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFN 164 (224)
Q Consensus 100 v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N 164 (224)
..+.||....++-.. ...+.|.+|++.++... ....+.|++||.+.+++|..-++..
T Consensus 2 ~~L~~g~~~~lr~~~--~~~l~v~~G~vWlT~~g------~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAAA--GQRLRVESGRVWLTREG------DPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcCC--CcEEEEccccEEEECCC------CCCCEEECCCCEEEeCCCCEEEEEe
Confidence 356677776666443 34489999999987632 1224699999999999998766543
No 98
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=86.23 E-value=9.4 Score=29.71 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=41.5
Q ss_pred EEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcE
Q 027381 95 ISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNA 170 (224)
Q Consensus 95 is~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a 170 (224)
+.+.++.....-.....-+.+.--+.+.++|...+... ++ ...+.+||+++++.+.++.+.-.+....
T Consensus 34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~------g~--~~~~~pg~~~l~d~~~~~~~~~~~~~~~ 101 (172)
T PF14525_consen 34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQG------GR--EVELAPGDVVLLDPGQPYRLEFSAGCRQ 101 (172)
T ss_pred EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEEC------CE--EEEEcCCeEEEEcCCCCEEEEECCCccE
Confidence 45555554432222111122234566677888877652 44 4699999999999999998765544333
No 99
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=84.73 E-value=2.5 Score=38.94 Aligned_cols=64 Identities=22% Similarity=0.276 Sum_probs=41.5
Q ss_pred EEcCCccCCCccCCCCcEEEEEEecEEEEEEEec-CC-------------CCCeEEEEEeCCCCEEEECCCCeeEEEec
Q 027381 101 DYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTS-DQ-------------LNNTLIAKVLNKGDVFVFPQGLIHFQFNI 165 (224)
Q Consensus 101 ~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~-~~-------------~g~~~~~~~L~~GDv~~~P~G~~H~~~N~ 165 (224)
-..+||...+||-+. +-+++=..|+=+..+... +. ........++.|||+.+||+|..|+-...
T Consensus 125 ~a~~GGgvg~H~D~Y-DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 125 FAAPGGGVGPHFDQY-DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred EecCCCccCccccch-heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence 457899999999987 554444445444444221 10 00111235899999999999999987665
No 100
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=83.85 E-value=13 Score=30.36 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=70.5
Q ss_pred EEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECC----CCeeEEEecCCCcEEEE
Q 027381 98 FRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQ----GLIHFQFNIGKTNAAAY 173 (224)
Q Consensus 98 a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~----G~~H~~~N~g~~~a~~i 173 (224)
....+++|...-.. -.....+++|++|.+.+...+.+ |++.....+.+||++-... +..+...-...+++.++
T Consensus 21 ~~~~~~kg~~l~~~-g~~~~~~y~V~~G~v~~~~~~~~--g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~ 97 (211)
T PRK11753 21 HIHKYPAKSTLIHA-GEKAETLYYIVKGSVAVLIKDEE--GKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVA 97 (211)
T ss_pred eEEEeCCCCEEEeC-CCCCCeEEEEEeCEEEEEEECCC--CCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEE
Confidence 45567777755332 22357899999999999876554 2455557899999984432 22222212224455555
Q ss_pred EEec-------CCCCccee----------------------------chhhhh------cC--CC-----CCCHHHHHhh
Q 027381 174 SALN-------SQFPGEVT----------------------------IADTVF------GA--NP-----SINPDFLGKA 205 (224)
Q Consensus 174 ~~~~-------s~~pg~~~----------------------------~~~~lf------~~--~p-----~~~~~vla~~ 205 (224)
..=. .++|.... ++..+. +. .| .++.+-||+-
T Consensus 98 ~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~ 177 (211)
T PRK11753 98 EISYKKFRQLIQVNPDILMALSAQMARRLQNTSRKVGDLAFLDVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRI 177 (211)
T ss_pred EEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHH
Confidence 3211 23444321 011111 00 00 3777899999
Q ss_pred cCCCHHHHHHHhhhhc
Q 027381 206 FQLDPKIVKDLQNKFI 221 (224)
Q Consensus 206 f~~d~~~v~~l~~~~~ 221 (224)
+|++.+++.++.+++.
T Consensus 178 lG~tr~tvsR~l~~l~ 193 (211)
T PRK11753 178 VGCSREMVGRVLKMLE 193 (211)
T ss_pred hCCCHHHHHHHHHHHH
Confidence 9999999999877664
No 101
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=81.47 E-value=4.4 Score=27.83 Aligned_cols=37 Identities=27% Similarity=0.473 Sum_probs=27.5
Q ss_pred CcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEE
Q 027381 116 ASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 116 a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~ 154 (224)
...+++|++|.+.+...+.++ .+.....+.+||++-.
T Consensus 17 ~~~~~~i~~G~v~~~~~~~~~--~~~~~~~~~~g~~~g~ 53 (91)
T PF00027_consen 17 CDHIYIILSGEVKVSSINEDG--KEQIIFFLGPGDIFGE 53 (91)
T ss_dssp ESEEEEEEESEEEEEEETTTS--EEEEEEEEETTEEESG
T ss_pred CCEEEEEEECceEEEeceecc--eeeeecceeeeccccc
Confidence 589999999999998876651 2333568888887643
No 102
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=79.97 E-value=9 Score=31.11 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=36.2
Q ss_pred EEEEcCCccCCCccCC-CCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEEC
Q 027381 99 RIDYAPYGQRPPHIHP-RASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFP 155 (224)
Q Consensus 99 ~v~l~pgg~~~pH~Hp-~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P 155 (224)
...+++|...-.---+ .+..+++|++|.+++...+++ |.+.....+.+||++-.+
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~--G~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDE--GNALTLRYVRPGEYFGEE 63 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCC--CCEEEEEEecCCCeechH
Confidence 3455666543222111 347899999999999887765 255556677999988554
No 103
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=79.75 E-value=12 Score=26.35 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=37.7
Q ss_pred EEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEEC
Q 027381 98 FRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFP 155 (224)
Q Consensus 98 a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P 155 (224)
....+.+|... .+.......+.+|++|.+.+...+.+ |++.....+.+||.+-..
T Consensus 18 ~~~~~~~g~~l-~~~g~~~~~~y~v~~G~v~~~~~~~~--g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 18 EPVRYPAGEVI-IRQGDVGDSFYIILSGEVRVYKVLED--GREQILGILGPGDFFGEL 72 (120)
T ss_pred eEEEeCCCCEE-EeCCCcCCcEEEEEeeEEEEEEECCC--CceEEEEeecCCceechh
Confidence 34556777654 33444568899999999998776544 245556788999977554
No 104
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.88 E-value=9.4 Score=28.02 Aligned_cols=42 Identities=29% Similarity=0.284 Sum_probs=33.4
Q ss_pred CCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEE
Q 027381 115 RASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQ 162 (224)
Q Consensus 115 ~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~ 162 (224)
.+.|+..|+.|.+.+-+..+ .. +++..+|+.|.+|.+.-..+
T Consensus 40 a~~E~Mtvv~Gal~v~lpgs----~d--Wq~~~~Ge~F~VpgnS~F~l 81 (94)
T COG3123 40 AAPEEMTVVSGALTVLLPGS----DD--WQVYTAGEVFNVPGNSEFDL 81 (94)
T ss_pred CCceEEEEEeeEEEEEcCCC----cc--cEEecCCceEEcCCCCeEEE
Confidence 46899999999999987543 23 58999999999998765444
No 105
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=74.28 E-value=15 Score=25.66 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=36.1
Q ss_pred EEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEEC
Q 027381 98 FRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFP 155 (224)
Q Consensus 98 a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P 155 (224)
....+++|...-.. ......+.+|++|.+.+...+++ |.+.....+.+|+++-..
T Consensus 18 ~~~~~~~g~~l~~~-~~~~~~~~~i~~G~v~~~~~~~~--g~~~~~~~~~~g~~~g~~ 72 (115)
T cd00038 18 EERRFPAGEVIIRQ-GDPADSLYIVLSGSVEVYKLDED--GREQIVGFLGPGDLFGEL 72 (115)
T ss_pred eeeeeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCC--CcEEEEEecCCccCcChH
Confidence 44556777754222 22347899999999999876654 234456778899887443
No 106
>PHA02984 hypothetical protein; Provisional
Probab=72.87 E-value=22 Score=31.49 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=36.1
Q ss_pred cEEE--EEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEec
Q 027381 117 SEIF--LVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNI 165 (224)
Q Consensus 117 ~Ei~--~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~ 165 (224)
.|.+ .+++|+.++..... ++..+..+++||.|.+.-+.-|.....
T Consensus 92 nEy~FvlCl~G~~~I~~~~~----~~~is~~I~kGeaf~md~~t~h~i~T~ 138 (286)
T PHA02984 92 NEYMFVLCLNGKTSIECFNK----GSKITNTIKKGEAFTLNLKTKYVTTTK 138 (286)
T ss_pred ccEEEEEEcCCeEEEEEecC----CceeeeEEecCceEEEEccceEEEEeC
Confidence 4544 46899999988653 566688999999999999999998643
No 107
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=71.44 E-value=34 Score=31.02 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=40.9
Q ss_pred cEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEE
Q 027381 94 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQ 162 (224)
Q Consensus 94 gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~ 162 (224)
.+++.+.++..-... .+ .+...+++|++|++++... ++ +..|++|+.+++|+...-+.
T Consensus 241 ~F~l~~~~i~~~~~~-~~--~~~~~il~v~eG~~~l~~~------~~--~~~l~~G~s~~ipa~~~~~~ 298 (312)
T COG1482 241 DFALYKWDISGTAEF-IK--QESFSILLVLEGEGTLIGG------GQ--TLKLKKGESFFIPANDGPYT 298 (312)
T ss_pred ceEEEEEeccChhhh-cc--CCCcEEEEEEcCeEEEecC------CE--EEEEcCCcEEEEEcCCCcEE
Confidence 567777777652211 11 1258999999999998652 34 36999999999999865554
No 108
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=71.32 E-value=2.5 Score=37.72 Aligned_cols=19 Identities=37% Similarity=0.551 Sum_probs=17.6
Q ss_pred EEEeCCCCEEEECCCCeeE
Q 027381 143 AKVLNKGDVFVFPQGLIHF 161 (224)
Q Consensus 143 ~~~L~~GDv~~~P~G~~H~ 161 (224)
...+++||++++|+|.+|.
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHA 170 (302)
T ss_pred ccccCCCCEEEeCCCCccc
Confidence 4689999999999999998
No 109
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=69.72 E-value=15 Score=31.55 Aligned_cols=93 Identities=20% Similarity=0.246 Sum_probs=57.0
Q ss_pred CccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEEecCCCCcc-
Q 027381 105 YGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGE- 183 (224)
Q Consensus 105 gg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~~~s~~pg~- 183 (224)
.|....|| ++-..+|++|+.+.... ++....+.++||....|+|......-. +.+.++.=-..--|-.
T Consensus 111 eGhsGrh~---ad~y~tIL~G~~~~~~~------g~~~~evy~pGd~~~l~rg~a~~y~m~--~~tw~LEY~RG~IP~~l 179 (216)
T PF04622_consen 111 EGHSGRHW---ADDYFTILSGEQWAWSP------GSLEPEVYKPGDSHHLPRGEAKQYQMP--PGTWALEYGRGWIPSML 179 (216)
T ss_pred CCCCcceE---eeeEEEEEEEEEEEEcC------CCCCceEeccCCEEEecCceEEEEEeC--CCeEEEEecCCchhhhh
Confidence 34555665 57889999999987652 233357999999999999999866543 3333332111112221
Q ss_pred -eechhhhhcCCCCCCHHHHHhhcCCCHH
Q 027381 184 -VTIADTVFGANPSINPDFLGKAFQLDPK 211 (224)
Q Consensus 184 -~~~~~~lf~~~p~~~~~vla~~f~~d~~ 211 (224)
+.+++.+|++ ++-..+-++..+..+
T Consensus 180 pf~~~dt~~sT---lDf~t~~~T~~~~~~ 205 (216)
T PF04622_consen 180 PFGFADTLFST---LDFPTLYRTVYITAR 205 (216)
T ss_pred HHHHHHHHHhc---cchHHHHHHHHHHHH
Confidence 2345666664 666666666655543
No 110
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=67.33 E-value=17 Score=30.51 Aligned_cols=53 Identities=6% Similarity=-0.022 Sum_probs=36.5
Q ss_pred EEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEEC
Q 027381 100 IDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFP 155 (224)
Q Consensus 100 v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P 155 (224)
..+++|...- +-......+.+|++|.+++...+.+ |.+.....+.+||++-..
T Consensus 34 ~~~~kge~l~-~~G~~~~~~y~V~~G~v~v~~~~~~--G~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 34 FHFLAREYIV-QEGQQPSYLFYLTRGRAKLYATLAN--GKVSLIDFFAAPCFIGEI 86 (226)
T ss_pred eeeCCCCEEE-cCCCCCceEEEEEeCEEEEEEECCC--CCEeeeeecCCCCeEEee
Confidence 3556665442 2233457899999999999887766 245555778999988654
No 111
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=66.92 E-value=5.1 Score=36.23 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.8
Q ss_pred EEEeCCCCEEEECCCCeeEEE
Q 027381 143 AKVLNKGDVFVFPQGLIHFQF 163 (224)
Q Consensus 143 ~~~L~~GDv~~~P~G~~H~~~ 163 (224)
...|+|||++++|+|.+|...
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~ 179 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYL 179 (312)
T ss_pred EEecCCCCEEEecCCCceeec
Confidence 368999999999999999873
No 112
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=66.91 E-value=34 Score=30.08 Aligned_cols=78 Identities=14% Similarity=0.008 Sum_probs=47.2
Q ss_pred EEEeccCCCCCcccccEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCC--------C
Q 027381 79 ETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKG--------D 150 (224)
Q Consensus 79 v~~~~~~~~P~l~~~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~G--------D 150 (224)
++.++.... +.. -+.+..+.|++|.....-...+ +-.++.++|++++.+. ++. ...+..- |
T Consensus 14 ~~~i~~~~~-g~~--~~~~~~l~L~~g~~~~~~~~~~-E~~vv~l~G~~~v~~~------g~~-~~~l~~R~~vF~~~~d 82 (261)
T PF04962_consen 14 VYSITPENA-GWM--YMGFGVLRLEAGESLEFELERR-ELGVVNLGGKATVTVD------GEE-FYELGGRESVFDGPPD 82 (261)
T ss_dssp EEECTCCCC-CCC--CBECCCEEEECCHCCCCCCCSE-EEEEEEESSSEEEEET------TEE-EEEE-TTSSGGGS--E
T ss_pred EEEECCCcc-Ccc--ccceEEEEecCCCEEeccCCCc-EEEEEEeCCEEEEEeC------Cce-EEEecccccccCCCCc
Confidence 455554444 333 2455678888887665554322 4456678999999872 212 2466666 9
Q ss_pred EEEECCCCeeEEEecCC
Q 027381 151 VFVFPQGLIHFQFNIGK 167 (224)
Q Consensus 151 v~~~P~G~~H~~~N~g~ 167 (224)
++++|+|.--.+...++
T Consensus 83 ~lYvp~g~~~~i~a~~~ 99 (261)
T PF04962_consen 83 ALYVPRGTKVVIFASTD 99 (261)
T ss_dssp EEEE-TT--EEEEESST
T ss_pred EEEeCCCCeEEEEEcCC
Confidence 99999999988877544
No 113
>PLN02868 acyl-CoA thioesterase family protein
Probab=65.93 E-value=23 Score=32.78 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=36.9
Q ss_pred EEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEE
Q 027381 98 FRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 98 a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~ 154 (224)
....+++|..+-.- -.....+++|++|++++...+.+ ++.....+++||++-.
T Consensus 32 ~~~~~~~Ge~I~~~-Gd~~~~lyiI~~G~V~v~~~~~~---ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVRE-GEPGDGLYFIWKGEAEVSGPAEE---ESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeC-CCcCceEEEEEeCEEEEEEECCC---CcEEEEEeCCCCEeeh
Confidence 34566777654332 23457899999999999776654 3444578899998884
No 114
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=65.36 E-value=68 Score=25.47 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=51.0
Q ss_pred EEEEEEEEcCCccCCCccCCCCcEEEEEEec-EEEEEEEecCCCCCeEEEEEeC----CC--CEEEECCCCeeEEEecCC
Q 027381 95 ISAFRIDYAPYGQRPPHIHPRASEIFLVLEG-TLYVGFVTSDQLNNTLIAKVLN----KG--DVFVFPQGLIHFQFNIGK 167 (224)
Q Consensus 95 is~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G-~~~v~~~~~~~~g~~~~~~~L~----~G--Dv~~~P~G~~H~~~N~g~ 167 (224)
.+....-+.++....+|-= +++|+.+...| .+++.+..++ ++..+.+|. +| =.++||+|.....+..+.
T Consensus 41 ~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~d---g~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~ 116 (139)
T PF06172_consen 41 STSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPD---GSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPE 116 (139)
T ss_dssp -EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTT---STEEEEEESSTTCTTEBSEEEE-TTSEEEEEECES
T ss_pred ceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCC---CCeEEEEECCCCCCCceEEEEECCCEEEEccccCC
Confidence 4455555777777766654 67999999999 6888888876 444445563 34 358999999988765555
Q ss_pred CcEEEEEE
Q 027381 168 TNAAAYSA 175 (224)
Q Consensus 168 ~~a~~i~~ 175 (224)
..-.+++.
T Consensus 117 ~~y~Lvsc 124 (139)
T PF06172_consen 117 GDYSLVSC 124 (139)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEE
Confidence 55555544
No 115
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=65.30 E-value=5.6 Score=37.01 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=18.4
Q ss_pred EEEeCCCCEEEECCCCeeEE
Q 027381 143 AKVLNKGDVFVFPQGLIHFQ 162 (224)
Q Consensus 143 ~~~L~~GDv~~~P~G~~H~~ 162 (224)
...|++||++++|+|.+|..
T Consensus 238 ~v~l~pGeaifipAg~~HAy 257 (389)
T PRK15131 238 VVKLNPGEAMFLFAETPHAY 257 (389)
T ss_pred EEEeCCCCEEEeCCCCCeEE
Confidence 46899999999999999986
No 116
>PHA02890 hypothetical protein; Provisional
Probab=64.50 E-value=41 Score=29.71 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=36.4
Q ss_pred CcEEEE--EEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEe
Q 027381 116 ASEIFL--VLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFN 164 (224)
Q Consensus 116 a~Ei~~--Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N 164 (224)
..|.+| +++|+.++..... ++..+..+++||.|.+.-+.-|.+..
T Consensus 90 SnEy~FVlCL~Gs~~In~~~~----d~~iS~~I~kGeaF~mdv~t~H~i~T 136 (278)
T PHA02890 90 KIECFFVACIEGSCKINVNIG----DREISDHIHENQGFIMDVGLDHAIDS 136 (278)
T ss_pred eccEEEEEEeCCeEEEEEecC----CceeeeeeecCceEEEEccceEEEEc
Confidence 345554 6899999987543 56678999999999999999999865
No 117
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=63.07 E-value=25 Score=31.30 Aligned_cols=46 Identities=4% Similarity=-0.052 Sum_probs=36.8
Q ss_pred cEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCc
Q 027381 117 SEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN 169 (224)
Q Consensus 117 ~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~ 169 (224)
.=++++.+|.+++.-. + ++ +..+.++..+++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~~--~---g~--~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITTS--S---GE--YITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEeC--C---Cc--eEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 5689999999998642 2 23 359999999999999999998876544
No 118
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.00 E-value=3.4 Score=35.45 Aligned_cols=40 Identities=25% Similarity=0.187 Sum_probs=35.0
Q ss_pred cEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEe
Q 027381 94 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVT 133 (224)
Q Consensus 94 gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~ 133 (224)
++|+..+-+++++++|.|-||.-+-+.-++=|++.+--.+
T Consensus 74 ~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyD 113 (236)
T KOG4281|consen 74 RFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYD 113 (236)
T ss_pred ceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeecc
Confidence 6889999999999999999999888888899999886543
No 119
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=61.51 E-value=67 Score=26.26 Aligned_cols=65 Identities=22% Similarity=0.184 Sum_probs=46.2
Q ss_pred CCccCCCCcEEEEEEecEEEEEEEecCCC--CCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEE
Q 027381 109 PPHIHPRASEIFLVLEGTLYVGFVTSDQL--NNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAY 173 (224)
Q Consensus 109 ~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~--g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i 173 (224)
..-.||..+|.++-+.|+-.+-++.++++ -.+...+..++|+.+.+-+|+.|...-.=+.+..++
T Consensus 72 ~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~dF~ 138 (162)
T PRK03606 72 MLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSDFL 138 (162)
T ss_pred eEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCCceEE
Confidence 34567888999999999988877765421 134557899999999999999996532223334443
No 120
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=60.92 E-value=73 Score=28.39 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=35.8
Q ss_pred CCcEE-EEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEe--cCCCcEEEE
Q 027381 115 RASEI-FLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFN--IGKTNAAAY 173 (224)
Q Consensus 115 ~a~Ei-~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N--~g~~~a~~i 173 (224)
...|+ ++.+.|++++.+. ++. ..+.+.|.+++|+|..-.... ....++.+.
T Consensus 72 ~rrE~giV~lgG~~~V~vd------G~~--~~l~~~d~LYVp~G~~~v~~as~~a~~paef~ 125 (276)
T PRK00924 72 ERRELGIINIGGAGTVTVD------GET--YELGHRDALYVGKGAKEVVFASADAANPAKFY 125 (276)
T ss_pred CCcEEEEEEccceEEEEEC------CEE--EecCCCcEEEECCCCcEEEEEecCCCCCcEEE
Confidence 33564 5678889998862 454 469999999999998866653 224566665
No 121
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=60.03 E-value=56 Score=26.56 Aligned_cols=66 Identities=24% Similarity=0.283 Sum_probs=38.0
Q ss_pred CccCCCCcEEEEEEecEE-EEEEEecCCC---CCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEE
Q 027381 110 PHIHPRASEIFLVLEGTL-YVGFVTSDQL---NNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSA 175 (224)
Q Consensus 110 pH~Hp~a~Ei~~Vl~G~~-~v~~~~~~~~---g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~ 175 (224)
.-.|+..+|.++-+.|+. .+-++..+.+ -+++..+.+.+|+.+.+-+|+.|...=.=+++..++.+
T Consensus 74 lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~~~~f~vv 143 (165)
T PF04115_consen 74 LERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDEPADFLVV 143 (165)
T ss_dssp EEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSSEEEEEEE
T ss_pred eccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccCCcceEEEE
Confidence 345777899999999988 5555544311 13456789999999999999999753333356655544
No 122
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=59.42 E-value=98 Score=28.16 Aligned_cols=62 Identities=11% Similarity=0.172 Sum_probs=46.9
Q ss_pred CCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEEec
Q 027381 108 RPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALN 177 (224)
Q Consensus 108 ~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~~~ 177 (224)
+..-++.+.+-+++--+|.+.+.- +- +| ..+.++++-+||+|.-..+--.|.....++.++.
T Consensus 147 ~safyNsDGDFLiVPQ~G~L~I~T--Ef---Gr---llV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg 208 (446)
T KOG1417|consen 147 NSAFYNSDGDFLIVPQQGRLWITT--EF---GR---LLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYG 208 (446)
T ss_pred cceeecCCCCEEEecccCcEEEEe--ec---cc---eeecccceEEeecccEEEEecCCCCcceEEEEec
Confidence 556677777777777788877654 22 55 4899999999999999888777777777777665
No 123
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=59.10 E-value=31 Score=27.58 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=28.8
Q ss_pred CCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEE
Q 027381 115 RASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 115 ~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~ 154 (224)
....+++|++|.+.+...+++ |.+.....+.+||++-.
T Consensus 10 ~~~~~~~i~~G~v~~~~~~~~--G~e~~l~~~~~g~~~G~ 47 (193)
T TIGR03697 10 PAEKVYFLRRGAVKLSRVYES--GEEITVALLRENSVFGV 47 (193)
T ss_pred CCCcEEEEEecEEEEEEeCCC--CcEeeeEEccCCCEeee
Confidence 346789999999999887665 24544578999998743
No 124
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=55.57 E-value=12 Score=27.90 Aligned_cols=12 Identities=33% Similarity=0.213 Sum_probs=6.1
Q ss_pred CchHHHHHHHHH
Q 027381 1 MKVIQFLIGFAL 12 (224)
Q Consensus 1 m~~~~~~~~~~~ 12 (224)
|++-.|++|.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 775445544333
No 125
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=54.57 E-value=87 Score=25.00 Aligned_cols=54 Identities=11% Similarity=0.056 Sum_probs=40.3
Q ss_pred CCccCCCCcEEEEEEecEEEEEEEecCC-----------C-----CCeEEEEEeCCCCEEEECCCCeeEEE
Q 027381 109 PPHIHPRASEIFLVLEGTLYVGFVTSDQ-----------L-----NNTLIAKVLNKGDVFVFPQGLIHFQF 163 (224)
Q Consensus 109 ~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~-----------~-----g~~~~~~~L~~GDv~~~P~G~~H~~~ 163 (224)
.+=.|.+-..+.|+++|+-++++..... | +... ...|++|+..+|.++.+|...
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~-~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGE-TVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCc-EEEeCCCeEEEECCcccccCC
Confidence 4556777789999999999888864321 0 1222 468999999999999999864
No 126
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=53.12 E-value=22 Score=32.49 Aligned_cols=103 Identities=19% Similarity=0.140 Sum_probs=55.9
Q ss_pred CceEEEeccCCCCCcccccEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEe-------cC-----CCCCeEEE
Q 027381 76 GVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVT-------SD-----QLNNTLIA 143 (224)
Q Consensus 76 g~~v~~~~~~~~P~l~~~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~-------~~-----~~g~~~~~ 143 (224)
|.+ ..++..-..+-|++--.--|-.|-|-+..++-.|+...|- |.....+++ .. +...+-++
T Consensus 191 Gts-iHIDPlgTSAWNtll~GhKrW~LfPp~~p~~lvkv~~~e~-----g~~~de~itwf~~~y~rt~~Pswp~E~kPIE 264 (407)
T KOG2130|consen 191 GTS-IHIDPLGTSAWNTLLQGHKRWVLFPPGTPPELVKVTVDEG-----GKQPDEIITWFSTIYPRTQLPSWPDEYKPIE 264 (407)
T ss_pred Cce-eEECCcchHHHHHHhhccceeEEcCCCCCCCceeeccccc-----CCCCcceechhhhccccccCCCCccccCCce
Confidence 443 3467777777777655555666655554443333222221 111111111 00 11245556
Q ss_pred EEeCCCCEEEECCCCeeEEEecCCCcEEEEEEecCCCCcce
Q 027381 144 KVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEV 184 (224)
Q Consensus 144 ~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~~~s~~pg~~ 184 (224)
-..++|+++++|.|--|.+.|...+-|+.--.-+..|.+.+
T Consensus 265 c~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~V 305 (407)
T KOG2130|consen 265 CLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFV 305 (407)
T ss_pred eeecCCceEEecCCeEEEEeccCceeeeeeccccccCCcee
Confidence 78999999999999999999975444433222334454443
No 127
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=52.70 E-value=61 Score=25.71 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=37.4
Q ss_pred EEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECC
Q 027381 98 FRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQ 156 (224)
Q Consensus 98 a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~ 156 (224)
....+++|...-..--+ +.-+.+|++|.+.+....++ |.+.....+.+||++-...
T Consensus 24 ~~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~--G~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 24 EVRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTED--GREIILGFLGPGDFFGELA 79 (214)
T ss_pred eeEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCC--CcEEEEEEecCCchhhhHH
Confidence 34455555433332222 35689999999999988765 2455556799999997774
No 128
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=52.25 E-value=88 Score=24.58 Aligned_cols=56 Identities=23% Similarity=0.234 Sum_probs=36.4
Q ss_pred cCCCccCCCCcEEEEEEecEEEEEEEecCC------------------CCCeEEEEEeCCCCEEEECCCCeeEE
Q 027381 107 QRPPHIHPRASEIFLVLEGTLYVGFVTSDQ------------------LNNTLIAKVLNKGDVFVFPQGLIHFQ 162 (224)
Q Consensus 107 ~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~------------------~g~~~~~~~L~~GDv~~~P~G~~H~~ 162 (224)
-..+=.|.+-..+-|+++|+=++++..... ++.......|++|+..+|-++.+|.-
T Consensus 60 ~~~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~~y~~~~D~~f~~~~~~~~~i~l~~G~faiffP~D~H~P 133 (142)
T TIGR00022 60 SKKAELHHRYLDIQLLLRGEENIEVGTTPPNLSVYEDYLEEDDIQLCADIDDEQTVILKPGMFAVFYPGEPHKP 133 (142)
T ss_pred hcchhhhhheEEEEEeecceEEEEEecCccccccccCCCcCCCEEeccCCCCceEEEeCCCcEEEECCCCcccc
Confidence 344566777789999999999888853210 01112245677777777777777753
No 129
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=48.84 E-value=71 Score=25.96 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=43.0
Q ss_pred cCCCccCCCCcEEEEEEecEEEEEEEecCC-----------------CCCeEEEEEeCCCCEEEECCCCeeEEEecCC
Q 027381 107 QRPPHIHPRASEIFLVLEGTLYVGFVTSDQ-----------------LNNTLIAKVLNKGDVFVFPQGLIHFQFNIGK 167 (224)
Q Consensus 107 ~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~-----------------~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 167 (224)
..-+-.|.+=.++-++++|+=.+++....+ +.......+|.+|+..+|=+|.+|...-...
T Consensus 60 ~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~~~ 137 (154)
T COG2731 60 EKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCNVG 137 (154)
T ss_pred hcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccccC
Confidence 344555666789999999998888765331 0111235789999999999999997644443
No 130
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=47.77 E-value=1.7e+02 Score=25.70 Aligned_cols=87 Identities=13% Similarity=0.037 Sum_probs=55.7
Q ss_pred eEEEeccCCCCCcccccEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecC-CC-CCeEEEEEeCCCCEEEEC
Q 027381 78 DETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSD-QL-NNTLIAKVLNKGDVFVFP 155 (224)
Q Consensus 78 ~v~~~~~~~~P~l~~~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~-~~-g~~~~~~~L~~GDv~~~P 155 (224)
.+..++.++ +++.- +.+..++|++|.....-.-.+ +-++++++|++++...+.. ++ |.|.-.++=++=|.+++|
T Consensus 15 ~v~~vtp~s-agw~Y--VGF~~~~L~~Ges~~~~~~~~-E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp 90 (270)
T COG3718 15 LVQDVTPES-AGWEY--VGFRLLRLAAGESATEETGDR-ERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVP 90 (270)
T ss_pred ceEEecCCC-CCcee--EEEEEEEccCCCcccccCCCc-eEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEec
Confidence 355555433 34443 556667789998777665554 6677789999998754322 00 234333455677999999
Q ss_pred CCCeeEEEecCCC
Q 027381 156 QGLIHFQFNIGKT 168 (224)
Q Consensus 156 ~G~~H~~~N~g~~ 168 (224)
.|..-.+...++.
T Consensus 91 ~g~~~~vtA~t~~ 103 (270)
T COG3718 91 AGSAFSVTATTDL 103 (270)
T ss_pred CCceEEEEeecce
Confidence 9999887765543
No 131
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=47.46 E-value=60 Score=25.74 Aligned_cols=57 Identities=23% Similarity=0.207 Sum_probs=34.0
Q ss_pred cCCCccCCCCcEEEEEEecEEEEEEE-ecCC-----------------CCCeEEEEEeCCCCEEEECCCCeeEEE
Q 027381 107 QRPPHIHPRASEIFLVLEGTLYVGFV-TSDQ-----------------LNNTLIAKVLNKGDVFVFPQGLIHFQF 163 (224)
Q Consensus 107 ~~~pH~Hp~a~Ei~~Vl~G~~~v~~~-~~~~-----------------~g~~~~~~~L~~GDv~~~P~G~~H~~~ 163 (224)
-..+=.|.+-..+-|+++|+=++++. +... ++.......|++|+.++|-++.+|.-.
T Consensus 60 ~~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~ 134 (153)
T PF04074_consen 60 ERRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPG 134 (153)
T ss_dssp GS-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEE
T ss_pred ccceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCcccccc
Confidence 34566788888999999999999883 2210 011222457999999999999999843
No 132
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=47.27 E-value=62 Score=26.87 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=34.6
Q ss_pred EEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEEC
Q 027381 101 DYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFP 155 (224)
Q Consensus 101 ~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P 155 (224)
.+++|...-.- -.....+++|++|.+.+...++++ ++.....+.+||++-.+
T Consensus 41 ~~~kge~l~~~-Gd~~~~ly~v~~G~v~~~~~~~~G--~e~i~~~~~~gd~~g~~ 92 (235)
T PRK11161 41 PIQKGQTLFKA-GDELKSLYAIRSGTIKSYTITEQG--DEQITGFHLAGDLVGFD 92 (235)
T ss_pred eecCCCEeECC-CCCcceEEEEeeceEEEEEECCCC--CEEEEEeccCCceeccc
Confidence 45666543222 223578999999999998877652 45445567899998643
No 133
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=46.02 E-value=99 Score=21.42 Aligned_cols=48 Identities=21% Similarity=0.334 Sum_probs=33.9
Q ss_pred EecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEE
Q 027381 123 LEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAY 173 (224)
Q Consensus 123 l~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i 173 (224)
..|...+.+.+.+ |..+++..+++||..-++.+..- ....|+-.++-+
T Consensus 5 a~~~sWv~V~d~d--G~~~~~~~l~~G~~~~~~~~~~~-~i~iGna~~v~v 52 (77)
T PF13464_consen 5 ATGDSWVEVTDAD--GKVLFSGTLKAGETKTFEGKEPF-RIRIGNAGAVEV 52 (77)
T ss_pred EeCCeEEEEEeCC--CcEeeeeeeCCCcEEEEeCCCCE-EEEEeCCCcEEE
Confidence 4577777777555 36788999999999999555444 346677666655
No 134
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=45.04 E-value=49 Score=27.58 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=35.0
Q ss_pred EEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEE
Q 027381 99 RIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVF 154 (224)
Q Consensus 99 ~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~ 154 (224)
...+++|...- +-...+..+++|++|.+.+.....+ ++.....+.+||++-.
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~---~~~~i~~~~~g~~~g~ 83 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQD---RETTLAILRPVSTFIL 83 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCC---ceEEEEEeCCCchhhh
Confidence 34566665433 3444568999999999999765432 4444578899998643
No 135
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=42.29 E-value=1.1e+02 Score=26.98 Aligned_cols=82 Identities=20% Similarity=0.228 Sum_probs=52.1
Q ss_pred cEEEEEEEEcCCcc---CCCccCCCCcEEEEEEe---cEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCC
Q 027381 94 GISAFRIDYAPYGQ---RPPHIHPRASEIFLVLE---GTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGK 167 (224)
Q Consensus 94 gis~a~v~l~pgg~---~~pH~Hp~a~Ei~~Vl~---G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 167 (224)
-+++....++||.+ .|.|.|.|..|..+... -+-.+.+..+. ++..-.+++--+.++-|+=.+|.- .|.
T Consensus 176 QL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP---~ETRHiv~~NEqAViSP~WSIHSG--~GT 250 (278)
T COG3717 176 QLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQP---QETRHIVMHNEQAVISPPWSIHSG--VGT 250 (278)
T ss_pred hhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCC---CceeEEEEeccceeeCCCceeecC--ccc
Confidence 46677788999985 68999999888765321 11222222211 222235667777788888888865 456
Q ss_pred CcEEEEEEecCCC
Q 027381 168 TNAAAYSALNSQF 180 (224)
Q Consensus 168 ~~a~~i~~~~s~~ 180 (224)
..-.+|++...+|
T Consensus 251 ~~YtFIWaMaGeN 263 (278)
T COG3717 251 ANYTFIWAMAGEN 263 (278)
T ss_pred cceEEEEEecccc
Confidence 6677777776554
No 136
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=42.18 E-value=60 Score=23.14 Aligned_cols=65 Identities=20% Similarity=0.232 Sum_probs=36.3
Q ss_pred EEEcCCccCCCccCC---CCcEEEEE--Ee-c-----EEEEEEEecC-CCCCeEEEEE-----eCCCCEEEECC-CCeeE
Q 027381 100 IDYAPYGQRPPHIHP---RASEIFLV--LE-G-----TLYVGFVTSD-QLNNTLIAKV-----LNKGDVFVFPQ-GLIHF 161 (224)
Q Consensus 100 v~l~pgg~~~pH~Hp---~a~Ei~~V--l~-G-----~~~v~~~~~~-~~g~~~~~~~-----L~~GDv~~~P~-G~~H~ 161 (224)
....+|+...||+.. ....+.++ +. - -+...+.... .+ ....... .++|++++|+. ...|.
T Consensus 4 ~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~-~~~~~~~~~~~~p~~g~~v~F~~~~~~H~ 82 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSD-DVSREVEDFDIVPKPGRLVIFPSDNSLHG 82 (100)
T ss_dssp EEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TS-STCEEEGGGSEE-BTTEEEEEESCTCEEE
T ss_pred EEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCC-CcceEEEeccccCCCCEEEEEeCCCCeec
Confidence 345788899999876 32333333 34 1 1333333210 00 1111223 88999999999 99998
Q ss_pred EEec
Q 027381 162 QFNI 165 (224)
Q Consensus 162 ~~N~ 165 (224)
....
T Consensus 83 v~~v 86 (100)
T PF13640_consen 83 VTPV 86 (100)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 8766
No 137
>PLN02288 mannose-6-phosphate isomerase
Probab=41.84 E-value=19 Score=33.62 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=18.0
Q ss_pred EEeCCCCEEEECCCCeeEEE
Q 027381 144 KVLNKGDVFVFPQGLIHFQF 163 (224)
Q Consensus 144 ~~L~~GDv~~~P~G~~H~~~ 163 (224)
..|+|||.+++|+|.+|...
T Consensus 253 v~L~PGeaifl~ag~~HAYl 272 (394)
T PLN02288 253 VKLNPGEALYLGANEPHAYL 272 (394)
T ss_pred EecCCCCEEEecCCCCceec
Confidence 58999999999999999653
No 138
>PF13994 PgaD: PgaD-like protein
Probab=40.61 E-value=33 Score=26.98 Aligned_cols=23 Identities=22% Similarity=0.548 Sum_probs=21.6
Q ss_pred CCHHHHHhhcCCCHHHHHHHhhh
Q 027381 197 INPDFLGKAFQLDPKIVKDLQNK 219 (224)
Q Consensus 197 ~~~~vla~~f~~d~~~v~~l~~~ 219 (224)
++++-+|+.|++++++++++++.
T Consensus 101 ~~~~elA~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 101 VSDEELARSFGLSPEQLQQLRQA 123 (138)
T ss_pred CCHHHHHHHcCCCHHHHHHHHhC
Confidence 89999999999999999999875
No 139
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=40.42 E-value=31 Score=27.47 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=22.8
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHhhh
Q 027381 195 PSINPDFLGKAFQLDPKIVKDLQNK 219 (224)
Q Consensus 195 p~~~~~vla~~f~~d~~~v~~l~~~ 219 (224)
|.++++-+|+.|+++++.+++|++.
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcC
Confidence 4699999999999999999999875
No 140
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=39.56 E-value=35 Score=27.73 Aligned_cols=25 Identities=28% Similarity=0.676 Sum_probs=22.8
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHhhh
Q 027381 195 PSINPDFLGKAFQLDPKIVKDLQNK 219 (224)
Q Consensus 195 p~~~~~vla~~f~~d~~~v~~l~~~ 219 (224)
|.++++-+|+.|+++++.++++++.
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHhC
Confidence 4699999999999999999999875
No 141
>COG1741 Pirin-related protein [General function prediction only]
Probab=39.41 E-value=2.8e+02 Score=24.68 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=31.5
Q ss_pred CCCCcccccEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEE
Q 027381 86 QIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVG 130 (224)
Q Consensus 86 ~~P~l~~~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~ 130 (224)
..|.-+.. +.+..+.+++|...+.+ =..-.-++||++|++.+.
T Consensus 165 ~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~ 207 (276)
T COG1741 165 SSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVN 207 (276)
T ss_pred ccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEc
Confidence 44555555 78888899999987776 223357899999988873
No 142
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=39.14 E-value=65 Score=21.56 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=22.2
Q ss_pred EEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecC
Q 027381 128 YVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIG 166 (224)
Q Consensus 128 ~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g 166 (224)
++++-|+. ++.++.+|++|..+.--+|.++.-.-+|
T Consensus 11 rVQlTD~K---gr~~Ti~L~~G~~fhThrG~i~HDdlIG 46 (54)
T PF14801_consen 11 RVQLTDPK---GRKHTITLEPGGEFHTHRGAIRHDDLIG 46 (54)
T ss_dssp EEEEEETT-----EEEEE--TT-EEEETTEEEEHHHHTT
T ss_pred EEEEccCC---CCeeeEEECCCCeEEcCccccchhheec
Confidence 34555665 7888999999999999998876433334
No 143
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=39.13 E-value=34 Score=31.83 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=43.0
Q ss_pred CCccCCCc---cCCCCcEEEEEEecEEEEEEEecCCC----------------------CCeEEEEEeCCCCEEEECCCC
Q 027381 104 PYGQRPPH---IHPRASEIFLVLEGTLYVGFVTSDQL----------------------NNTLIAKVLNKGDVFVFPQGL 158 (224)
Q Consensus 104 pgg~~~pH---~Hp~a~Ei~~Vl~G~~~v~~~~~~~~----------------------g~~~~~~~L~~GDv~~~P~G~ 158 (224)
.|+-.|.| +|. --+...+-|+=+.-+..+..+ ..+.++..=++|+++++|.|-
T Consensus 207 ~gSwtp~HaDVf~s--~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFvPsGW 284 (427)
T KOG2131|consen 207 AGSWTPFHADVFHS--PSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFVPSGW 284 (427)
T ss_pred CCCCCccchhhhcC--CcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeeccCcc
Confidence 35567888 774 456667778766666554310 011223455799999999999
Q ss_pred eeEEEecCCC
Q 027381 159 IHFQFNIGKT 168 (224)
Q Consensus 159 ~H~~~N~g~~ 168 (224)
-|...|.+++
T Consensus 285 ~hQV~NL~dT 294 (427)
T KOG2131|consen 285 HHQVLNLGDT 294 (427)
T ss_pred ccccccccce
Confidence 9999999875
No 144
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=36.99 E-value=36 Score=22.97 Aligned_cols=24 Identities=13% Similarity=0.342 Sum_probs=17.6
Q ss_pred CCHHHHHhhcCCCHHHHHHHhhhh
Q 027381 197 INPDFLGKAFQLDPKIVKDLQNKF 220 (224)
Q Consensus 197 ~~~~vla~~f~~d~~~v~~l~~~~ 220 (224)
=.+.-|.+.+|++++++++||+++
T Consensus 44 s~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 44 SVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp SHHHHHHHT-T--HHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHc
Confidence 366788889999999999999875
No 145
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=36.00 E-value=37 Score=26.32 Aligned_cols=26 Identities=8% Similarity=0.234 Sum_probs=21.0
Q ss_pred CCCHHHHHhhcCCCHHHHHHHhhhhc
Q 027381 196 SINPDFLGKAFQLDPKIVKDLQNKFI 221 (224)
Q Consensus 196 ~~~~~vla~~f~~d~~~v~~l~~~~~ 221 (224)
++++..+++..++++++|.++++..+
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~~ 97 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEHG 97 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHHT
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHcC
Confidence 59999999999999999999998765
No 146
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=35.89 E-value=2.5e+02 Score=23.16 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=45.9
Q ss_pred CccCCCCcEEEEEEec-EEEEEEEecCCC--CCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEEEE
Q 027381 110 PHIHPRASEIFLVLEG-TLYVGFVTSDQL--NNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSA 175 (224)
Q Consensus 110 pH~Hp~a~Ei~~Vl~G-~~~v~~~~~~~~--g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i~~ 175 (224)
.-.||..++.+.-+.| ...+-++.++++ -+....+....|+.+.+-+|..|...-.=+.+..++++
T Consensus 73 mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vv 141 (171)
T PRK13395 73 MERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVV 141 (171)
T ss_pred EEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEE
Confidence 4457888999999999 766666654311 13456789999999999999999754333444545544
No 147
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=35.79 E-value=71 Score=30.86 Aligned_cols=33 Identities=39% Similarity=0.596 Sum_probs=24.9
Q ss_pred CCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEE
Q 027381 115 RASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 115 ~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~ 152 (224)
-+.|+++|.+|.+.+ ++++ |.+. -.+|++|++|
T Consensus 347 vgkEMyIVk~G~L~V--v~dD--g~t~-~~~L~~G~~F 379 (536)
T KOG0500|consen 347 VGKEMYIVKEGKLAV--VADD--GVTV-FVTLKAGSVF 379 (536)
T ss_pred ccceEEEEEccEEEE--EecC--CcEE-EEEecCCcee
Confidence 368999999999987 3444 1344 4799999887
No 148
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=34.93 E-value=14 Score=27.84 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=22.7
Q ss_pred cceEeecCCCCCCceecCcccCCCCCCCCCCce
Q 027381 29 QDVCVAINDPKDGVFVNGKFCKDPKLARAEDFF 61 (224)
Q Consensus 29 ~dfcv~~~~~~~~~~~~g~~ck~~~~v~~~df~ 61 (224)
+|.|-. +.+.+||..+|+.+.|...|-.
T Consensus 28 k~~~~~-----GrV~vNG~~aKpS~~VK~GD~l 55 (100)
T COG1188 28 KEMIEG-----GRVKVNGQRAKPSKEVKVGDIL 55 (100)
T ss_pred HHHHHC-----CeEEECCEEcccccccCCCCEE
Confidence 566665 4699999999999999888843
No 149
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=34.63 E-value=73 Score=21.23 Aligned_cols=47 Identities=26% Similarity=0.413 Sum_probs=23.2
Q ss_pred chHHHHHHHHHHHHHhhhhhccCCCCccceEeecCCCCCCceecCcccC
Q 027381 2 KVIQFLIGFALLALASSLASATDPGHLQDVCVAINDPKDGVFVNGKFCK 50 (224)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~dfcv~~~~~~~~~~~~g~~ck 50 (224)
|++.|++++++++-.++. .-+.|--..-=||++ |......++=-||.
T Consensus 3 k~lkf~lv~imlaqllsc-tpsapyeikspcvs~-didd~s~ls~npci 49 (60)
T PF10913_consen 3 KSLKFLLVLIMLAQLLSC-TPSAPYEIKSPCVSA-DIDDNSSLSVNPCI 49 (60)
T ss_pred hHHHHHHHHHHHHHHHcC-CCCCCccccCCcccc-ccCCCccccccccc
Confidence 333455444444433322 244455567778885 33333334445775
No 150
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=32.29 E-value=16 Score=37.12 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=40.2
Q ss_pred EEcCCccCCCccCCCCcEEEEEEec---EEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCC
Q 027381 101 DYAPYGQRPPHIHPRASEIFLVLEG---TLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGK 167 (224)
Q Consensus 101 ~l~pgg~~~pH~Hp~a~Ei~~Vl~G---~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~ 167 (224)
..+-|..+++-.||-.++-.|.-++ ++.-.+ |-+-.+++=..||.++||+|.+|.++|.-.
T Consensus 761 ~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEy------GVe~WtfvQ~LGdAVfIPAGaPHQVrNLkS 824 (889)
T KOG1356|consen 761 CKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEY------GVEPWTFVQFLGDAVFIPAGAPHQVRNLKS 824 (889)
T ss_pred hHHhcCCCCcccCCCcccceeccHHHHHHHHHHh------CCCccchhhcccceEEecCCCcHHhhhhhh
Confidence 3344556666668877777776554 121111 123345677889999999999999998754
No 151
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=29.64 E-value=85 Score=24.70 Aligned_cols=27 Identities=30% Similarity=0.424 Sum_probs=19.8
Q ss_pred EEEEeCCCCEEEECCCCeeEE-EecCCC
Q 027381 142 IAKVLNKGDVFVFPQGLIHFQ-FNIGKT 168 (224)
Q Consensus 142 ~~~~L~~GDv~~~P~G~~H~~-~N~g~~ 168 (224)
....+++||++++...++|.- .|.++.
T Consensus 180 ~~~~~~~Gdvl~~~~~~~H~s~~N~s~~ 207 (211)
T PF05721_consen 180 VPVPMKAGDVLFFHSRLIHGSGPNTSDD 207 (211)
T ss_dssp EEE-BSTTEEEEEETTSEEEEE-B-SSS
T ss_pred EEeecCCCeEEEEcCCccccCCCCCCcC
Confidence 457899999999999999975 555544
No 152
>PHA00672 hypothetical protein
Probab=29.07 E-value=3e+02 Score=21.91 Aligned_cols=70 Identities=16% Similarity=0.028 Sum_probs=54.3
Q ss_pred cEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEecCCCcEEEE
Q 027381 94 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAY 173 (224)
Q Consensus 94 gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~i 173 (224)
|+....+.++.|....=-.|. -|-+++.+|..++... +. .++|+.=.++.-|+|-....+...++.+..+
T Consensus 46 GvYARei~IPkGt~LtG~~hk--f~~~ii~sG~itV~td------ge--~~rl~g~~~i~~~aG~KragyAHeDT~wt~~ 115 (152)
T PHA00672 46 GVYARTIRIPAGVALTGALIK--VSTVLIFSGHATVFIG------GE--AVELRGYHVIPASAGRKQAFVAHADTDLTML 115 (152)
T ss_pred ceeEEEEeccCceeeeeeeeE--eeEEEEecccEEEEeC------Cc--EEEEecceeeecCCCcccceeeeccceEEEE
Confidence 788899999999987777774 4556999999998763 23 3688888899999998887777666666555
No 153
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=28.81 E-value=1e+02 Score=31.37 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=33.2
Q ss_pred EEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEE
Q 027381 97 AFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVF 152 (224)
Q Consensus 97 ~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~ 152 (224)
+....+.||..+-.- -..++++.+|++|++.+... .+ +++.....+++||+|
T Consensus 397 ~~~~~~~pge~I~~q-ge~~~~lY~I~~G~V~i~~~-~~--~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 397 MKAEYIPPREDVIMQ-NEAPDDVYIVVSGEVEIIDS-EG--EKERVVGTLGCGDIF 448 (823)
T ss_pred hheeeeCCCCEEEEC-CCCCceEEEEEecEEEEEEe-cC--CcceeeEEccCCCEe
Confidence 344456777643322 22357899999999998542 22 134445789999987
No 154
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=28.79 E-value=68 Score=28.02 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=27.5
Q ss_pred EEEeCCCCEEEECCCCeeEE-EecCCCc-EEEEEEecCC
Q 027381 143 AKVLNKGDVFVFPQGLIHFQ-FNIGKTN-AAAYSALNSQ 179 (224)
Q Consensus 143 ~~~L~~GDv~~~P~G~~H~~-~N~g~~~-a~~i~~~~s~ 179 (224)
...+++||++++..-++|.- .|.++.+ ..++..|++.
T Consensus 212 ~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~ 250 (277)
T TIGR02408 212 TFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSV 250 (277)
T ss_pred eeccCCceEEEEccccccCCCCCCCCCcceeEEEEEecC
Confidence 45789999999999999964 5766543 5555567653
No 155
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=28.62 E-value=2e+02 Score=26.54 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=60.7
Q ss_pred CCCceEEEeccCCCCCcccccEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEE-
Q 027381 74 RLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVF- 152 (224)
Q Consensus 74 ~~g~~v~~~~~~~~P~l~~~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~- 152 (224)
..|..|..++.+- ++.-+.+.|+.++..-+..-+-..+...+-.+++..-++.++.+++ ...-...|++||-+
T Consensus 250 ~sG~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG--~~vsVt~Lk~GD~VL 323 (344)
T PRK02290 250 RSGDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDG--KPVSVVDLKPGDEVL 323 (344)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCC--CEeeeeecCCCCEEE
Confidence 4577787776542 2234678899998887766665556789999999999999998762 33445799999976
Q ss_pred -EECCCCeeEEEe
Q 027381 153 -VFPQGLIHFQFN 164 (224)
Q Consensus 153 -~~P~G~~H~~~N 164 (224)
+++.+--|+-..
T Consensus 324 ~~~~~~~RHfG~~ 336 (344)
T PRK02290 324 GYLEEAARHFGMA 336 (344)
T ss_pred EEecCCcccccce
Confidence 455666676443
No 156
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.88 E-value=1.1e+02 Score=31.14 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=32.0
Q ss_pred EcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEE
Q 027381 102 YAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFV 153 (224)
Q Consensus 102 l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~ 153 (224)
+.||..+-..=.+- +|+.||++|.+.+.- .++ |+......|++||++=
T Consensus 447 f~pge~iireGd~v-~~myFI~rG~le~~~--~~~-g~~~~~~~L~~Gd~~G 494 (727)
T KOG0498|consen 447 FTPGEYIIREGDPV-TDMYFIVRGSLESIT--TDG-GGFFVVAILGPGDFFG 494 (727)
T ss_pred cCCCCeEEecCCcc-ceeEEEEeeeEEEEE--ccC-CceEEEEEecCCCccc
Confidence 34555544444443 899999999998743 322 1444568999999874
No 157
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=27.58 E-value=2.7e+02 Score=21.97 Aligned_cols=50 Identities=20% Similarity=0.103 Sum_probs=37.7
Q ss_pred cEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEEe---cCCCcEEEEE
Q 027381 117 SEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFN---IGKTNAAAYS 174 (224)
Q Consensus 117 ~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~N---~g~~~a~~i~ 174 (224)
.=+.+|++|+=++.+. ++ .+...+|+.++.+..++-..+- ..++|...+.
T Consensus 24 p~i~~vlQG~K~~~~g------~~--~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~ 76 (155)
T PF06719_consen 24 PSICIVLQGSKRVHLG------DQ--VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALS 76 (155)
T ss_pred CeEEEEEeeeEEEEEC------Cc--eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEE
Confidence 5689999999988873 34 3699999999999999875433 3456666654
No 158
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=27.32 E-value=2.6e+02 Score=22.16 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=41.2
Q ss_pred CCcccccEEEEEEEEcCCccCCCccCCCCcEEEEEE----ecEEEEEEEecCCCCCeEEEEEeCCCCEEEECCCCeeEEE
Q 027381 88 PGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVL----EGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQF 163 (224)
Q Consensus 88 P~l~~~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl----~G~~~v~~~~~~~~g~~~~~~~L~~GDv~~~P~G~~H~~~ 163 (224)
|+++ .+...++.|++|...... +..|+...+ .|++.+++-++- + ..++|||++-+-.|..-.++
T Consensus 12 P~~k--N~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~---~----~~~~PGDIirLt~Gy~Si~q 79 (134)
T KOG3416|consen 12 PGLK--NINVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEE---G----CLIQPGDIIRLTGGYASIFQ 79 (134)
T ss_pred hhhh--cceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCc---C----cccCCccEEEecccchhhhc
Confidence 5666 355666666766543322 224555554 456666665532 2 47899999999999887765
Q ss_pred e
Q 027381 164 N 164 (224)
Q Consensus 164 N 164 (224)
+
T Consensus 80 g 80 (134)
T KOG3416|consen 80 G 80 (134)
T ss_pred C
Confidence 4
No 159
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=27.32 E-value=1.1e+02 Score=25.27 Aligned_cols=40 Identities=33% Similarity=0.536 Sum_probs=31.8
Q ss_pred EEeCCCCEEEEC------CCCee-EEEecCCCcEEEEEEecCCCCcc
Q 027381 144 KVLNKGDVFVFP------QGLIH-FQFNIGKTNAAAYSALNSQFPGE 183 (224)
Q Consensus 144 ~~L~~GDv~~~P------~G~~H-~~~N~g~~~a~~i~~~~s~~pg~ 183 (224)
..|++||+.-+- .|.+| ++-|+|.++-..+.++....|-.
T Consensus 131 V~lSpgdihsv~n~~sdrs~aiHvy~a~ig~~~r~~fsi~ge~~Pk~ 177 (191)
T COG5553 131 VHLSPGDIHSVANTGSDRSGAIHVYLADIGGTDRQLFSILGENRPKE 177 (191)
T ss_pred EeeCCCCeeeecccCCCccceEEEEecccCCCcceeeeecccCCCCC
Confidence 369999999886 35888 46679999999998888777743
No 160
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=26.89 E-value=71 Score=19.85 Aligned_cols=26 Identities=8% Similarity=0.068 Sum_probs=18.7
Q ss_pred CCCHHHHHhhcCCCHHHHHHHhhhhc
Q 027381 196 SINPDFLGKAFQLDPKIVKDLQNKFI 221 (224)
Q Consensus 196 ~~~~~vla~~f~~d~~~v~~l~~~~~ 221 (224)
+.+..-+++.++++..+|.++.++|.
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~ 42 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYR 42 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT---
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcc
Confidence 47888999999999999999999875
No 161
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=26.69 E-value=83 Score=25.38 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=24.7
Q ss_pred CCCccceEeecCCCCCCceecCcccCCCCCCCCCCceeec
Q 027381 25 PGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG 64 (224)
Q Consensus 25 ~~~~~dfcv~~~~~~~~~~~~g~~ck~~~~v~~~df~f~~ 64 (224)
|.-..|||++.+.....+.+-|.--. .....+||+|..
T Consensus 105 PaG~YDy~I~~P~~~~kiwIaGd~g~--~~tr~dDy~fEA 142 (161)
T PF10365_consen 105 PAGTYDYCIAAPQPGGKIWIAGDGGD--GPTRGDDYVFEA 142 (161)
T ss_pred cCceeEEEEecCCCCCeEEEecCCCC--CCccccceEEec
Confidence 55678999995544456777764322 223578999873
No 162
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=24.35 E-value=2.5e+02 Score=25.93 Aligned_cols=86 Identities=16% Similarity=0.158 Sum_probs=60.8
Q ss_pred CCCceEEEeccCCCCCcccccEEEEEEEEcCCccCCCccCCCCcEEEEEEecEEEEEEEecCCCCCeEEEEEeCCCCEE-
Q 027381 74 RLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVF- 152 (224)
Q Consensus 74 ~~g~~v~~~~~~~~P~l~~~gis~a~v~l~pgg~~~pH~Hp~a~Ei~~Vl~G~~~v~~~~~~~~g~~~~~~~L~~GDv~- 152 (224)
..|..|..++.+- ++.-+.+.|+.++..-+..-+-..+..++-.+++...++.++.+++ ...-...|++||-+
T Consensus 260 ~sG~~VlvVd~~G----~tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G--~~vsVt~Lk~GD~vL 333 (354)
T PF01959_consen 260 RSGDEVLVVDADG----RTRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDG--EPVSVTELKPGDEVL 333 (354)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCC--CEeeeeecCCCCEEE
Confidence 4577777776442 2234678888888877765554447789999999999999998762 33445789999987
Q ss_pred -EECCCCeeEEEec
Q 027381 153 -VFPQGLIHFQFNI 165 (224)
Q Consensus 153 -~~P~G~~H~~~N~ 165 (224)
++..+--|+-...
T Consensus 334 ~~~~~~~RHfG~~I 347 (354)
T PF01959_consen 334 VYLEEAGRHFGMKI 347 (354)
T ss_pred EEecCCCcccceEe
Confidence 4566667765443
No 163
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=23.88 E-value=2.1e+02 Score=24.57 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.0
Q ss_pred EEEeCCCCEEEECCCCeeEEEecCC
Q 027381 143 AKVLNKGDVFVFPQGLIHFQFNIGK 167 (224)
Q Consensus 143 ~~~L~~GDv~~~P~G~~H~~~N~g~ 167 (224)
...+++|++++||...+|.......
T Consensus 142 ~Vkp~aG~~vlfps~~lH~v~pVt~ 166 (226)
T PRK05467 142 RVKLPAGDLVLYPSTSLHRVTPVTR 166 (226)
T ss_pred EEecCCCeEEEECCCCceeeeeccC
Confidence 4678999999999999999876443
No 164
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=23.57 E-value=64 Score=22.55 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=14.2
Q ss_pred CchHHHHHHHHHHHHHhhhhhccCCC
Q 027381 1 MKVIQFLIGFALLALASSLASATDPG 26 (224)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~d~~ 26 (224)
|..+++.+|++|+++- ++|.-||++
T Consensus 1 mnn~Si~VLlaLvLIg-~fAVqSdag 25 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIG-SFAVQSDAG 25 (71)
T ss_pred CCchhHHHHHHHHHHh-hheeeecCc
Confidence 6666666654444443 455667775
No 165
>PRK15194 type-1 fimbrial protein subunit A; Provisional
Probab=23.48 E-value=1.3e+02 Score=24.46 Aligned_cols=27 Identities=30% Similarity=0.273 Sum_probs=11.7
Q ss_pred CchHHHHHHHHHHHHHhhhhhccCCCC
Q 027381 1 MKVIQFLIGFALLALASSLASATDPGH 27 (224)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~d~~~ 27 (224)
||...+.++++.+++++..+.|.|+++
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~a~~~~~ 27 (185)
T PRK15194 1 MKLRFISSAIASLLFVAGAAYAADPTP 27 (185)
T ss_pred CchHHHHHHHHHHHHHhhhhhhccccc
Confidence 666433332222323334445566544
No 166
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=23.21 E-value=73 Score=19.56 Aligned_cols=10 Identities=50% Similarity=1.032 Sum_probs=6.7
Q ss_pred CCceecCcccC
Q 027381 40 DGVFVNGKFCK 50 (224)
Q Consensus 40 ~~~~~~g~~ck 50 (224)
+.|.+||. |+
T Consensus 24 G~ViING~-C~ 33 (36)
T PF08194_consen 24 GNVIINGK-CI 33 (36)
T ss_pred CeEEECce-ee
Confidence 45888884 54
No 167
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=22.95 E-value=68 Score=21.67 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=16.6
Q ss_pred ceecCcccCCCCCCCCCCcee
Q 027381 42 VFVNGKFCKDPKLARAEDFFF 62 (224)
Q Consensus 42 ~~~~g~~ck~~~~v~~~df~f 62 (224)
+-+||||+|+......+|-+|
T Consensus 32 ~I~NGF~~~~d~~L~e~D~v~ 52 (57)
T PF14453_consen 32 VILNGFPTKEDIELKEGDEVF 52 (57)
T ss_pred EEEcCcccCCccccCCCCEEE
Confidence 478999999888777777655
No 168
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=22.65 E-value=92 Score=18.45 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=19.3
Q ss_pred CCHHHHHhhcCCCHHHHHHHhhhhc
Q 027381 197 INPDFLGKAFQLDPKIVKDLQNKFI 221 (224)
Q Consensus 197 ~~~~vla~~f~~d~~~v~~l~~~~~ 221 (224)
++.+-++...|+..++|.++-++|.
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~ 27 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLE 27 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 6778899999999999999888765
No 169
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=22.54 E-value=1.5e+02 Score=25.86 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=38.7
Q ss_pred HHHhhhhhccCCCCccceEeecCCCCCCceecCcccCCCCCCCCCCc-eeecCCCCCCccCCCCceEEEeccC
Q 027381 14 ALASSLASATDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDF-FFSGLGKPGNTANRLGVDETDANVE 85 (224)
Q Consensus 14 ~~~~~~~~~~d~~~~~dfcv~~~~~~~~~~~~g~~ck~~~~v~~~df-~f~~~~~~~~~~~~~g~~v~~~~~~ 85 (224)
++++..=.++.|..+--+|+. | .|.+..||.| .+++ +++.-... ...++.|++|..+...
T Consensus 161 AlaLAsKV~~~pgivAElC~S--D--DP~YtTGYVA-------~~~~gY~RI~~mK-~~G~~~GGRvffv~~~ 221 (242)
T PRK01322 161 ALALASKVIAHPGVIAELCWS--D--DPDYTTGYVA-------TKKLGYHRITNLK-EEGTPYGGRIFFVDDS 221 (242)
T ss_pred HHHHHHHHhcCCCeEEEEEec--C--CCCCeeEEEE-------eCCCCeEeCcccc-ccCCCCCCEEEEEeCc
Confidence 334444457899999999999 4 3557789987 3454 33432222 2335789999887764
No 170
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=21.44 E-value=1.3e+02 Score=21.70 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=8.4
Q ss_pred hccCCCCccc--eEee
Q 027381 21 SATDPGHLQD--VCVA 34 (224)
Q Consensus 21 ~~~d~~~~~d--fcv~ 34 (224)
.+..|..-.| ||.-
T Consensus 20 ~~~~pA~A~dyp~Clq 35 (82)
T PF12071_consen 20 LAAAPAQARDYPYCLQ 35 (82)
T ss_pred ccccchhhcCCcEEEe
Confidence 3455555566 8886
No 171
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=21.00 E-value=59 Score=29.98 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=16.0
Q ss_pred EEeCCCCEEEECCCCeeEEE
Q 027381 144 KVLNKGDVFVFPQGLIHFQF 163 (224)
Q Consensus 144 ~~L~~GDv~~~P~G~~H~~~ 163 (224)
..|++|+.+++|+|.+|...
T Consensus 252 v~L~pGeaifl~a~~~HAYl 271 (373)
T PF01238_consen 252 VELQPGEAIFLPAGEPHAYL 271 (373)
T ss_dssp EEE-TT-EEEEHTTHHEEEE
T ss_pred EEecCCceEEecCCCccccc
Confidence 48999999999999999654
Done!