BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027382
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 262 bits (669), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 123/196 (62%), Positives = 159/196 (81%), Gaps = 3/196 (1%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+KAQIWDTA
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQERYR +TSAYYRGAVGA+LVYD+ K +++++ RWL ELR HAD NIVIML+GNK DL
Sbjct: 63 GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHD 192
LRAVPT++A+ FA++ NL F+ETSAL++TNVE AF +LTEIYRI+S+K + HD
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHD 182
Query: 193 VAGNSNLLKGTRIIVP 208
+ +N++ I VP
Sbjct: 183 ESPGNNVVD---ISVP 195
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 253 bits (646), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 116/167 (69%), Positives = 145/167 (86%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+KAQIWDTA
Sbjct: 18 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 77
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQERYRA+TSAYYRGAVGA+LVYD+ K +++++ RWL ELR HAD NIVIML+GNK DL
Sbjct: 78 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 137
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179
LRAVPT++A+ FA++ L F+ETSAL++TNVE AF T+LTEIYRI
Sbjct: 138 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 250 bits (638), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 115/167 (68%), Positives = 144/167 (86%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+KAQIWDTA
Sbjct: 6 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 65
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
G ERYRA+TSAYYRGAVGA+LVYD+ K +++++ RWL ELR HAD NIVIML+GNK DL
Sbjct: 66 GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 125
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179
LRAVPT++A+ FA++ L F+ETSAL++TNVE AF T+LTEIYRI
Sbjct: 126 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 250 bits (638), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 115/172 (66%), Positives = 146/172 (84%)
Query: 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
G + + DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+K
Sbjct: 20 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79
Query: 66 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
AQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+ K +++++ RWL ELR HAD NIVIML
Sbjct: 80 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 139
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
+GNK DL LRAVPT++A+ FA++ L F+ETSAL++TNVE AF T+LTEIY
Sbjct: 140 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 246 bits (629), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 114/172 (66%), Positives = 145/172 (84%)
Query: 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
G + + DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+K
Sbjct: 20 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79
Query: 66 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
AQIWDTAG ERYRA+TSAYYRGAVGA+LVYD+ K +++++ RWL ELR HAD NIVIML
Sbjct: 80 AQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 139
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
+GNK DL LRAVPT++A+ FA++ L F+ETSAL++TNVE AF T+LTEIY
Sbjct: 140 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 244 bits (623), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 113/172 (65%), Positives = 144/172 (83%)
Query: 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
G + + DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+K
Sbjct: 2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 61
Query: 66 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
AQIWDTAG ERYRA+TSAYYRGAVGA+LVYD+ K +++++ RWL ELR HAD NIVI L
Sbjct: 62 AQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXL 121
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
+GNK DL LRAVPT++A+ FA++ L F+ETSAL++TNVE AF T+LTEIY
Sbjct: 122 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 243 bits (621), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 112/165 (67%), Positives = 141/165 (85%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
DY+FKVVLIGDS VGKS LL+RF RNEF+++SK+TIGVEF T+++ +D KT+KAQIWDTA
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
G ERYRA+TSAYYRGAVGA+LVYD+ K +++++ RWL ELR HAD NIVI L+GNK DL
Sbjct: 63 GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL 122
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
LRAVPT++A+ FA++ L F+ETSAL++TNVE AF T+LTEIY
Sbjct: 123 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 241 bits (614), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 115/184 (62%), Positives = 148/184 (80%), Gaps = 4/184 (2%)
Query: 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI-DHKTV 64
GDY DY+FK+VLIGDS VGKS LL+RF R+EF+++SK+TIGVEF TK++ + ++K +
Sbjct: 1 GDY---YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKII 57
Query: 65 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM 124
KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+TK+ SF+++ +WL ELR +AD NIVI+
Sbjct: 58 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVIL 117
Query: 125 LIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKS 184
L+GNK DL LR + DA ++A++E L F+ETSALEATNVE AF +L EIY + KK
Sbjct: 118 LVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQ 177
Query: 185 LTAN 188
T N
Sbjct: 178 ATKN 181
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 237 bits (605), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 118/220 (53%), Positives = 154/220 (70%), Gaps = 6/220 (2%)
Query: 7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKA 66
DY D +FK+VLIGDS VGKS LL+RF +NEF++DSK+TIGVEF T+TL I+ K +KA
Sbjct: 5 DYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKA 64
Query: 67 QIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLI 126
QIWDTAGQERYRA+TSAYYRGAVGA++VYD++K S+++ WL ELR +AD N+ + LI
Sbjct: 65 QIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLI 124
Query: 127 GNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLT 186
GNK DL LRAVPTE+++ FAQ L F ETSAL + NV+ AF ++ IY+ +SK +
Sbjct: 125 GNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMD 184
Query: 187 ANDEHDVAGNSN---LLKGTRI-IVPGQDQN-SASKRGCC 221
D GN+N G I + P ++N A+ CC
Sbjct: 185 LGDS-SANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 228 bits (582), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 108/178 (60%), Positives = 138/178 (77%)
Query: 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
G + + ++VFKVVLIG+S VGK+ LL+RF RNEFS DS+ TIGVEF T+T+ + VK
Sbjct: 1 GSHMEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVK 60
Query: 66 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
AQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+TK Q++ + RWL EL HA+ IV+ML
Sbjct: 61 AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 120
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK 183
+GNK DL R VPTE+A+ FA+ L F+ETSAL++TNVE AF TVL EI+ +SK+
Sbjct: 121 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 228 bits (580), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 110/177 (62%), Positives = 137/177 (77%), Gaps = 4/177 (2%)
Query: 7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKA 66
DYN +VFKVVLIG+S VGK+ LL+RF RNEFS DS+ TIGVEF T+T+ + VKA
Sbjct: 21 DYN----FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 76
Query: 67 QIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLI 126
QIWDTAG ERYRA+TSAYYRGAVGA+LV+D+TK Q++ + RWL EL HA+ IV+ML+
Sbjct: 77 QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 136
Query: 127 GNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK 183
GNK DL R VPTE+A+ FA+ L F+ETSAL++TNVE AF TVL EI+ +SK+
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 218 bits (556), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 98/170 (57%), Positives = 135/170 (79%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
DY+FK+VLIGDS VGKS LL+RF +EF+++SK+TIGVEF T+T+ +++K +KAQIWDTA
Sbjct: 8 DYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTA 67
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
G ERYRA+TSAYYRGAVGA++VYD++K S+++ WL ELR +AD N+ + LIGNK DL
Sbjct: 68 GLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDL 127
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISK 182
LRAVPT++A+ FA + F ETSAL + NV+ AF ++ I++++SK
Sbjct: 128 AHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 177
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 190 bits (483), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 145/215 (67%), Gaps = 13/215 (6%)
Query: 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
N + DY+FK++LIG+S VGKS LL RF+ + ++ D +TIGV+F+ KT+ +D KTVK QI
Sbjct: 2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 69 WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
WDTAGQER+R +TS+YYRG+ G ++VYD+T ++SF+ + WL E+ +A ++ +L+GN
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL--T 186
KCDL R V + A+EFA + F+ETSAL++TNVE AFLT+ +I +S+++L T
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 187 ANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCC 221
+ D GN N LKG + G GCC
Sbjct: 182 TQKKED-KGNVN-LKGQSLTNTG---------GCC 205
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 190 bits (483), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 145/215 (67%), Gaps = 12/215 (5%)
Query: 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
N + DY+FK++LIG+S VGKS LL RF+ + ++ D +TIGV+F+ KT+ +D KTVK QI
Sbjct: 2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 69 WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
WDTAGQER+R +TS+YYRG+ G ++VYD+T ++SF+ + WL E+ +A ++ +L+GN
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL--T 186
KCDL R V + A+EFA + F+ETSAL++TNVE AFLT+ +I +S+++L T
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 187 ANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCC 221
+ D GN N LKG + G GCC
Sbjct: 182 TQKKED-KGNVN-LKGQSLTNTGG--------GCC 206
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 189 bits (479), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 118/169 (69%)
Query: 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
Y+FK ++IGD+ VGKS LL +F F TIGVEF + ++ID K +K QIWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
QE +R++T +YYRGA GA+LVYD+T+R++F+H+ WL++ R H+ N+VIMLIGNK DL
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISK 182
S R V E+ + FA+ L FMETSA A NVE AF+ EIYR I +
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 187 bits (475), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 116/164 (70%)
Query: 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
Y+FK ++IGD+ VGKS LL +F F TIGVEF + ++ID K +K QIWDTAG
Sbjct: 9 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 68
Query: 74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
QE +R++T +YYRGA GA+LVYD+T+R +F+H+ WL++ R H++ N+VIMLIGNK DL
Sbjct: 69 QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177
S R V E+ + FA+ L FMETSA A+NVE AF+ EIY
Sbjct: 129 SRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 126/170 (74%)
Query: 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
N + DY+FK++LIGDS VGKS LL RFA + ++ +TIGV+F+ +T+ +D KT+K QI
Sbjct: 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
Query: 69 WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
WDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+ +A +N+ +L+GN
Sbjct: 70 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
KCDL + + V A+EFA + F+ETSA ATNVE +F+T+ EI +
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 125/168 (74%)
Query: 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
N + DY+FK++LIGDS VGKS LL RFA + ++ +TIGV+F+ +T+S+++KTVK QI
Sbjct: 3 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQI 62
Query: 69 WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
WDTAGQER+R +TS+YYRGA G ++VYD+T R SFD++ +W+ E+ +A +N+ +L+GN
Sbjct: 63 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGN 122
Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
KCDL S R V +++ +E A + F+ETSA A NVE AF T+ EI
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 181 bits (458), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 125/168 (74%)
Query: 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
N + DY+FK++LIGDS VGK+ LL RFA + ++ +TIGV+F+ +T+ +D KT+K QI
Sbjct: 10 NPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
Query: 69 WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
WDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+ +A +N+ +L+GN
Sbjct: 70 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
KCDL + + V A+EFA + F+ETSA ATNVE +F+T+ EI
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 181 bits (458), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/164 (51%), Positives = 123/164 (75%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
DY+FK++LIG+S VGKS LL RF+ + ++ D +TIGV+F+ KT+ +D KTVK QIWDTA
Sbjct: 19 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 78
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQER+R +TS+YYRG+ G ++VYD+T ++SF+ + WL E+ +A ++ +L+GNKCDL
Sbjct: 79 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 138
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R V + A+EFA + F+ETSAL++TNVE AFLT+ +I
Sbjct: 139 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 180 bits (456), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 123/168 (73%)
Query: 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
N + DY+FK++LIGDS VGKS LL RFA + ++ +TIGV+F+ +T+ +D KT+K QI
Sbjct: 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
Query: 69 WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
WDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+ +A +N+ +L+GN
Sbjct: 87 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
KCDL + + V A+EFA + F+ETSA ATNVE +F T EI
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 180 bits (456), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 84/164 (51%), Positives = 123/164 (75%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
DY+FK++LIGDS VGKS LL RFA + ++ +TIGV+F+ +T+ +D KT+K QIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+ +A +N+ +L+GNKCDL
Sbjct: 64 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
+ + V A+EFA + F+ETSA ATNVE +F+T+ EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 180 bits (456), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 84/164 (51%), Positives = 123/164 (75%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
DY+FK++LIGDS VGKS LL RFA + ++ +TIGV+F+ +T+ +D KT+K QIWDTA
Sbjct: 23 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 82
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+ +A +N+ +L+GNKCDL
Sbjct: 83 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 142
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
+ + V A+EFA + F+ETSA ATNVE +F+T+ EI
Sbjct: 143 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/165 (49%), Positives = 114/165 (69%)
Query: 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
Y+FK ++IGD VGKS LL +F +F D TIGVEF T+ + + + +K QIWDTAG
Sbjct: 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73
Query: 74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
QER+RAVT +YYRGA GA++VYD+T+R +++H++ WL + R + N VI+LIGNK DL
Sbjct: 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
+ R V E+A++FA+ L F+E SA NVE AFL +IY+
Sbjct: 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 124/168 (73%)
Query: 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQI 68
N + DY+FK++LIGDS VGKS LL RFA + ++ +TIGV+F+ +T+ +D KT+K QI
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 69 WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGN 128
WDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+ +A +N+ +L+G
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGI 121
Query: 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
KCDL + + V A+EFA + F+ETSA ATNVE +F+T+ EI
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 176 bits (447), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 83/164 (50%), Positives = 122/164 (74%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
D +FK++LIGDS VGKS LL RFA + ++ +TIGV+F+ +T+ +D KT+K QIWDTA
Sbjct: 4 DALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQER+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+ +A +N+ +L+GNKCDL
Sbjct: 64 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
+ + V A+EFA + F+ETSA ATNVE +F+T+ EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 114/167 (68%)
Query: 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
Y+FK ++IGD VGKS LL +F +F D TIGVEF T+ + + + +K QIWDTAG
Sbjct: 29 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 88
Query: 74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
Q R+RAVT +YYRGA GA++VYD+T+R +++H++ WL + R + N VI+LIGNK DL
Sbjct: 89 QGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 148
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180
+ R V E+A++FA+ L F+E SA NVE AFL +IY+ I
Sbjct: 149 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 195
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/164 (50%), Positives = 121/164 (73%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
DY+FK++LIGDS VGKS LL RFA + ++ +TIGV+F+ +T+ +D KT+K QIWDTA
Sbjct: 7 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQER+R +TS+YYRGA G ++VYD+T ++S+ ++ +WL E+ +A +N+ +L+GNK DL
Sbjct: 67 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
+ + V A+EFA + F+ETSA ATNVE AF+T+ EI
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/164 (50%), Positives = 121/164 (73%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
DY+FK++LIGDS VGKS LL RFA + ++ +TIGV+F+ +T+ +D KT+K QIWDTA
Sbjct: 7 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQER+R +TS+YYRGA G ++VYD+T ++S+ ++ +WL E+ +A +N+ +L+GNK DL
Sbjct: 67 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
+ + V A+EFA + F+ETSA ATNVE AF+T+ EI
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 116/168 (69%), Gaps = 4/168 (2%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
D++FK ++IG + GKS LL +F N+F DS TIGVEF ++ +++ KTVK QIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQER+R+VT +YYRGA GA+LVYD+T R++++ +A WL + R A NIV++L GNK DL
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL----TVLTEI 176
R V +A FAQ L F+ETSAL NVE AFL T+L +I
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 174 bits (441), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 121/172 (70%), Gaps = 1/172 (0%)
Query: 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
GD +++ D++FK+VL+GD++VGK+ ++ RF FS +TIGV+F KTL I K VK
Sbjct: 20 GDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVK 79
Query: 66 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
QIWDTAGQER+R +T +YYR A GA+L YD+TKR SF + W++++R +A NIV +L
Sbjct: 80 LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 139
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFF-METSALEATNVETAFLTVLTEI 176
IGNK DL LR V +AQ A+ ++ +ETSA +++NVE AFL V TE+
Sbjct: 140 IGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/160 (50%), Positives = 119/160 (74%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K++LIGDS VGKS LL RFA + ++ +TIGV+F+ +T+ +D KT+K QIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136
+R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+ +A +N+ +L+GNKCDL + +
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 137 AVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
V A+EFA + F+ETSA ATNVE +F+T+ EI
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 171 bits (432), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 118/172 (68%)
Query: 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDT 71
+DY+FK++LIGDS VGK+ +L RF+ + F+ +TIG++F+ +T+ +D K +K QIWDT
Sbjct: 3 MDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 62
Query: 72 AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD 131
AGQER+R +T+AYYRGA+G MLVYD+T +SFD++ W+ + HA ++ M++GNKCD
Sbjct: 63 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 122
Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK 183
+ R V E ++ A + FMETSA NVE AF T+ +I + KK
Sbjct: 123 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 174
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/180 (47%), Positives = 118/180 (65%)
Query: 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
G ++ D++FK ++IG++ GKS LL +F +F DS TIGVEF +K +++ K VK
Sbjct: 1 GHMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 60
Query: 66 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
QIWDTAGQER+R+VT +YYRGA GA+LVYD+T R++++ + WL + R A +NIVI+L
Sbjct: 61 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 120
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL 185
GNK DL + R V +A FAQ L F+ETSAL NVE AF+ +I I L
Sbjct: 121 CGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGEL 180
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 169 bits (429), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 114/164 (69%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
DY+FK++LIGDS VGK+ +L RF+ + F+ +TIG++F+ +T+ +D K +K QIWDTA
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQER+R +T+AYYRGA+G MLVYD+T +SFD++ W+ + HA ++ M++GNKCD+
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R V E ++ A + FMETSA NVE AF T+ +I
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 166 bits (420), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 113/164 (68%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
D++FK ++IG++ GKS LL +F +F DS TIGVEF +K +++ K VK QIWDTA
Sbjct: 9 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 68
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQER+R+VT +YYRGA GA+LVYD+T R++++ + WL + R A +NIVI+L GNK DL
Sbjct: 69 GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 128
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
+ R V +A FAQ L F+ETSAL +VE AF+ +I
Sbjct: 129 DADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 163 bits (412), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 112/164 (68%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
D++FK ++IG++ GKS LL +F +F DS TIGVEF +K +++ K VK QIWDTA
Sbjct: 6 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 65
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
G ER+R+VT +YYRGA GA+LVYD+T R++++ + WL + R A +NIVI+L GNK DL
Sbjct: 66 GLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 125
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
+ R V +A FAQ L F+ETSAL +VE AF+ +I
Sbjct: 126 DADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 160 bits (404), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 108/163 (66%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+VL+GD GKS L+ RF +++F ++TIG F ++TL+++ TVK +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136
Y ++ YYRGA A++V+D+T + SF+ +W+ EL+ + N+V+ L GNK DL R
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 137 AVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179
V EDAQ +AQ LFFMETSA ATNV+ F + + R+
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 115/170 (67%), Gaps = 3/170 (1%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
D++FK+VLIG++ VGK+ L+ RF + F ATIGV+F KT+ I+ + VK QIWDTA
Sbjct: 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 83
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQER+R++T +YYR A +L YD+T +SF + WL E+ +A ++ +L+GNK DL
Sbjct: 84 GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 143
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISK 182
R V + A+EF++ ++++++ETSA E+ NVE FL + R+IS+
Sbjct: 144 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC---RLISE 190
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 108/163 (66%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+G+SAVGKS L+ RF + +F ++TIG F T+T+ +D TVK +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
RY ++ YYRGA A++VYD+T +SF W+ EL+ A NIVI L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
RAV ++AQ +A +L FMETSA + NV F+ + ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 104/157 (66%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+G+SAVGKS L+ RF + +F ++TIG F T+T+ +D TVK +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
RY ++ YYRGA A++VYD+T +F W+ EL+ A NIVI L GNK DL S
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
RAV ++AQ +A +L FMETSA A NV F+ +
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 160
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 108/163 (66%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+G+SAVGKS L+ RF + +F ++TIG F T+T+ +D TVK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
RY ++ YYRGA A++VYD+T +SF W+ EL+ A NIVI L GNK DL +
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
RAV ++AQ +A +L FMETSA + NV F+ + ++ +
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 157 bits (396), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 107/163 (65%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+G+S VGKS L+ RF + +F ++TIG F T+T+ +D TVK +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
RY ++ YYRGA A++VYD+T +SF W+ EL+ A NIVI L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
RAV ++AQ +A +L FMETSA + NV F+ + ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 156 bits (395), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 107/163 (65%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+G+S VGKS L+ RF + +F ++TIG F T+T+ +D TVK +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
RY ++ YYRGA A++VYD+T +SF W+ EL+ A NIVI L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
RAV ++AQ +A +L FMETSA + NV F+ + ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 156 bits (395), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 107/163 (65%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+G+S VGKS L+ RF + +F ++TIG F T+T+ +D TVK +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
RY ++ YYRGA A++VYD+T +SF W+ EL+ A NIVI L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
RAV ++AQ +A +L FMETSA + NV F+ + ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 112/167 (67%), Gaps = 2/167 (1%)
Query: 3 NLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK 62
NLY + DY+FK+++IG+S+VGK+ L R+A + F+ +T+G++F+ KT+ K
Sbjct: 13 NLY--FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK 70
Query: 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV 122
VK QIWDTAGQERYR +T+AYYRGA+G +L+YD+T +SF+ + W +++ ++ N
Sbjct: 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ 130
Query: 123 IMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
++L+GNKCD+ R VPTE Q A++ F E SA E +V AF
Sbjct: 131 VILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 107/163 (65%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+G+S VGKS L+ RF + +F ++TIG F T+T+ +D TVK +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
RY ++ YYRGA A++VYD+T +SF W+ EL+ A NIVI L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
RAV ++AQ +A +L FMETSA + NV F+ + ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 107/163 (65%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+G+S VGKS L+ RF + +F ++TIG F T+T+ +D TVK +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
RY ++ YYRGA A++VYD+T +SF W+ EL+ A NIVI L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
RAV ++AQ +A +L FMETSA + NV F+ + ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 108/163 (66%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+G+SAVGKS L+ RF + +F ++TIG F T+++ +D TVK +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
RY ++ YYRGA A++VYD+T +++F W+ EL+ A +IVI L GNK DL +
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
R V E+AQ +A +L FMETSA A NV FL + ++ +
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK 171
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 103/157 (65%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+G+SAVGKS L+ RF + +F ++TIG F T+T+ +D TVK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
RY ++ YYRGA A++VYD+T +F W+ EL+ A NIVI L GNK DL S
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
RAV ++AQ +A +L FMETSA A NV F+ +
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 103/157 (65%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+G+SAVGKS L+ RF + +F ++TI F T+T+ +D TVK +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
RY ++ YYRGA A++VYD+T +F W+ EL+ A NIVI L GNK DL S
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
RAV ++AQ +A +L FMETSA A NV F+ +
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/168 (47%), Positives = 108/168 (64%), Gaps = 8/168 (4%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+G+SAVGKS L+ RF + +F ++TIG F T+T+ +D TVK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
RY ++ YYRGA A++VYD+T +SF W+ EL+ A NIVI L GNK DL +
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK 183
RAV ++AQ +A +L F ETSA + NV EI+ I+KK
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNV--------NEIFXAIAKK 167
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 104/157 (66%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+G+SAVGKS L+ RF + +F ++TIG F T+T+ +D TVK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
RY ++ YYRGA A++VYD+T +SF W+ EL+ A NIVI L GNK DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
RAV ++AQ +A +L FMETSA + NV F+ +
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 162
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 154 bits (390), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 111/164 (67%), Gaps = 2/164 (1%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
D++FK+++IGDS VGKS LL RFA N FS TIGV+F+ +T+ I+ + VK QIWDTA
Sbjct: 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTA 66
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQER+R +TS YYRG G ++VYD+T +SF ++ RWL E+ + D ++ +L+GNK D
Sbjct: 67 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDD 125
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
+ V TEDA +FA + + ETSA E NVE F +TE+
Sbjct: 126 PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF-NCITEL 168
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 153 bits (387), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 104/161 (64%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
KV L+GD+ VGKS ++ RF ++ F + TIG F TKT+ ++ K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
R+ ++ YYRG+ A++VYD+TK+ SF + +W+ EL+ H +NIV+ + GNKCDL +
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R VP +DA+E+A+ +ETSA A N+E F + +I
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 107/167 (64%), Gaps = 1/167 (0%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTKTLSIDHKTVKAQIWDT 71
D FKV+L+GDS VGK+ LL RF F + +T+G++F+ K L +D VK Q+WDT
Sbjct: 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67
Query: 72 AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD 131
AGQER+R+VT AYYR A +L+YD+T + SFD++ WL E+ +A ++ +ML+GNK D
Sbjct: 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
R V ED ++ A+ L FMETSA NV+ AF + E+ R
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 105/157 (66%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
DY+FK++LIG+S+VGK+ L R+A + F+ +T+G++F+ KT+ K +K QIWDTA
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQERYR +T+AYYRGA+G +L+YD+ ++SF + W +++ ++ N ++L+GNKCDL
Sbjct: 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
R VP ED + A F E SA E NV+ F
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 106/160 (66%), Gaps = 1/160 (0%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
D + K++LIGDS VGKS LL RF ++F+ TIG++F+ KT+ I+ K VK QIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQER+R +T+AYYRGA+G +LVYD+T ++F ++ +W + HA+ ++L+GNK D+
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
+ R V + + A+ + F+E+SA NV F T+
Sbjct: 121 ET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 107/158 (67%)
Query: 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDT 71
DY+FK+++IG+S+VGK+ L R+A + F+ +T+G++F+ KT+ + K +K QIWDT
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 72 AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD 131
AGQERYR +T+AYYRGA+G +L+YD+T +SF+ + W +++ ++ N ++L+GNKCD
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
+ R V +E ++ A F E SA + NV+ F
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 109/175 (62%), Gaps = 1/175 (0%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
D + K++LIGDS VGKS LL RF ++F+ TIG++F+ KT+ I+ K VK Q+WDTA
Sbjct: 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 77
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQER+R +T+AYYRGA+G +LVYD+T ++F ++ +W + HA+ ++L+GNK D+
Sbjct: 78 GQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTA 187
+ R V + + A+ + F+E+SA NV F T+ I I L
Sbjct: 138 ET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVG 191
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 99/157 (63%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
KV L+GD+ VGKS ++ RF + F + TIG F TKT+ ++ K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
R+RA+ YYRG+ A++VYD+TK ++F + W+ ELR H +IV+ + GNKCDL +
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
R V DA+++A + F+ETSA A N+ F+ +
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEI 162
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
+ K++LIGDS VGKS LL RF ++F+ TIG++F+ KT+ I+ K VK Q+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134
ER+R +T+AYYRGA+G +LVYD+T ++F ++ +W + HA+ ++L+GNK D+ +
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 126
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
R V + + A+ + F+E+SA NV F T+
Sbjct: 127 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 163
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 104/160 (65%), Gaps = 1/160 (0%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
D + K++LIGDS VGKS LL RF ++F+ TIG++F+ KT+ I+ K VK QIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQER+R +T+AYYRGA G +LVYD+T ++F ++ +W + HA+ ++L+GNK D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
+ R V + + A+ + F+E+SA NV F T+
Sbjct: 121 ET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 98/157 (62%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
KV L+GD+ VGKS ++ RF + F + TIG F TKT+ ++ K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
R+RA+ YYRG+ A++VYD+TK ++F + W+ ELR H +IV+ + GNKCDL +
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
R V DA+++A + F+ETSA A N+ F+ +
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 103/154 (66%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+K+V +G+ AVGK+ ++ RF + F + ++TIG++F +KTL +D V+ Q+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
R+R++ +Y R + A++VYD+T RQSF++ +W+ ++ K+++I L+GNK DLG L
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
R V E+ + AQ N F ETSA N++ F
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 102/159 (64%), Gaps = 3/159 (1%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+VL+G++AVGKS ++ RF N+F+ + + TIG F T+ ++I+ TVK +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL---G 133
+ ++ YYR A A++VYD+TK QSF W+ EL A K+I+I L+GNK D G
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
R V E+ ++ A+ + L F ETSA NV FL +
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI 163
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 104/160 (65%), Gaps = 1/160 (0%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
D + K++LIGDS VGKS LL RF ++F+ TIG++F+ KT+ I+ K VK Q+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQER+R +T+AYYRGA G +LVYD+T ++F ++ +W + HA+ ++L+GNK D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
+ R V + + A+ + F+E+SA NV F T+
Sbjct: 121 ET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 109/167 (65%), Gaps = 1/167 (0%)
Query: 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
GD+ + FK+V +G+ +VGK+ L+ RF + F +ATIG++F +KT+ ++ +TV+
Sbjct: 6 GDFGNPLRK-FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 64
Query: 66 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
Q+WDTAGQER+R++ +Y R + A++VYD+T SF ++W+D++R +++IML
Sbjct: 65 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIML 124
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
+GNK DL R V TE+ + A+ N+ F+ETSA NV+ F V
Sbjct: 125 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 143 bits (360), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 111/167 (66%), Gaps = 1/167 (0%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
D+ +V++IG VGK+ L+ RF + F K+T+GV+F+ KT+ + K ++ QIWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
GQER+ ++TSAYYR A G +LVYD+TK+++FD + +W+ + +A ++ ++L+GNK D
Sbjct: 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 133 GSLRAVPTEDAQEFAQR-ENLFFMETSALEATNVETAFLTVLTEIYR 178
+ R + + ++FAQ+ + F E SA + NV+ FL ++ +I +
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 102/158 (64%)
Query: 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDT 71
DY FK+++IG+S+VGK+ L R+A + F+ +T+G++F+ KT+ + K +K QIWDT
Sbjct: 5 FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 72 AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD 131
AG ERYR +T+AYYRGA G +L YD+T +SF+ + W +++ ++ N ++L+GNKCD
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
R V +E ++ A F E SA + NV+ F
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 103/157 (65%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+V +G+ +VGK+ L+ RF + F +ATIG++F +KT+ ++ +T++ Q+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
R+R++ +Y R + A++VYD+T SF +W+D++R +++IML+GNK DL
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
R V E+ + A+ N+ F+ETSA NV+ F V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 105/162 (64%), Gaps = 2/162 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K+++IG+S VGKS LL RF + F + ATIGV+F+ KT+S+D K IWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN-IVIMLIGNKCDLGS 134
R+R +T +YYRGA G +LVYD+T+R +F + WL+EL + +N IV L+GNK D +
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKEN 135
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R V + +FA++ + F+E SA V+ AF ++ +I
Sbjct: 136 -REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 102/154 (66%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+V +G+ +VGK+ L+ RF + F +ATIG++F +KT+ ++ +TV+ Q+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
R+R++ +Y R + A++VYD+T SF +W+D++R +++IML+GNK DL
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
R V E+ + A+ N+ F+ETSA NV+ F
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 155
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 140 bits (352), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 104/154 (67%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+V +G+ +VGK+ L+ RF + F +ATIG++F +KT+ ++ +TV+ Q+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
R+R++ +Y R + A++VYD+T SF ++W+D++R +++IML+GNK DL
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
R + E+ ++ A+ ++ F+ETSA NV+ F
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLF 156
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 114/188 (60%), Gaps = 1/188 (0%)
Query: 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
GD+ + FK+V +G+ +VGK+ L+ RF + F +ATIG++F +KT+ ++ +T++
Sbjct: 5 GDFGNPLRK-FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIR 63
Query: 66 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
Q+WDTAG ER+R++ +Y R + A++VYD+T SF +W+D++R +++IML
Sbjct: 64 LQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 123
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL 185
+GNK DL R V E+ + A+ N+ F+ETSA NV+ F V + + S +
Sbjct: 124 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDR 183
Query: 186 TANDEHDV 193
+ D D+
Sbjct: 184 SREDMIDI 191
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 114/188 (60%), Gaps = 1/188 (0%)
Query: 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
GD+ + FK+V +G+ +VGK+ L+ RF + F +ATIG++F +KT+ ++ +TV+
Sbjct: 8 GDFGNPLRK-FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 66
Query: 66 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIML 125
Q+WDTAG ER+R++ +Y R + A++VYD+T SF +W+D++R +++IML
Sbjct: 67 LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 126
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL 185
+GNK DL R V E+ + A+ N+ F+ETSA NV+ F V + + S +
Sbjct: 127 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDR 186
Query: 186 TANDEHDV 193
+ D D+
Sbjct: 187 SREDMIDI 194
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 91/115 (79%)
Query: 18 VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY 77
++LIGDS VGKS LL RFA + ++ +TIGV+F+ +T+ +D KT+K QIWDTAGQER+
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 78 RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132
R +TS+YYRGA G ++VYD+T ++SF+++ +WL E+ +A +N+ +L+GNKCDL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 102/157 (64%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+V +G+ +VGK+ L+ RF + F +ATIG++F +KT+ ++ +TV+ Q+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
R+R++ +Y R + A++VYD+T SF +W+D++R +++IML+GNK DL
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172
R V E+ + A+ N+ F+ETSA NV+ F V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 103/169 (60%), Gaps = 6/169 (3%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+K+VL GD+AVGKS L R +NEF + AT+GV+FQ KTL +D + Q+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
R+R++ +Y+R A G +L+YD+T +SF ++ W+D + A + + IML+GNK D+
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 136 RA------VPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYR 178
A VP ++ A F ETSA + +N+ A L + E+ +
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 101/163 (61%), Gaps = 5/163 (3%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
+FK+++IGDS VGK+ L RF F ++ATIGV+F+ + + ID + +K Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 75 ERYR-AVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN-IVIMLIGNKCDL 132
ER+R ++ YYR + VYDMT SF + W++E + H N I +L+GNKCDL
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATN---VETAFLTV 172
S VPT+ AQ+FA ++ ETSA + VE F+T+
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 98/163 (60%), Gaps = 5/163 (3%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
+FK+++IGDS VGK+ L RF F ++ATIGV+F+ + + ID + +K Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 75 ERYR-AVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN-IVIMLIGNKCDL 132
ER+R ++ YYR + VYD T SF + W++E + H N I +L+GNKCDL
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATN---VETAFLTV 172
S VPT+ AQ+FA + ETSA + VE F T+
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTL 191
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 103/163 (63%), Gaps = 6/163 (3%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
+ KV+++GDS VGK+ L+ ++ +FS KATIG +F TK + +D + V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA----DKNIVIMLIGNKC 130
ER++++ A+YRGA +LV+D+T +F + W DE A +N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DLGSLRAVPTEDAQEFA-QRENLFFMETSALEATNVETAFLTV 172
DL + R V T+ AQ + + N+ + ETSA EA NVE AF T+
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 103/163 (63%), Gaps = 6/163 (3%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
+ KV+++GDS VGK+ L+ ++ +FS KATIG +F TK + +D + V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA----DKNIVIMLIGNKC 130
ER++++ A+YRGA +LV+D+T +F + W DE A +N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DLGSLRAVPTEDAQEFA-QRENLFFMETSALEATNVETAFLTV 172
DL + R V T+ AQ + + N+ + ETSA EA NVE AF T+
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 91/157 (57%)
Query: 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
Y FKVVL+G+ VGK+ L+ R+ N+F+ T+G F TK L+I K V IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
QER+ A+ YYR + GA+LVYD+T SF + W+ ELR I + ++GNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
R V ++A+ +A+ TSA + +E FL
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 112/184 (60%), Gaps = 15/184 (8%)
Query: 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK--- 62
GDY DY+ K++ +GDS VGK+ L R+ N+F+ T+G++F+ K + + +
Sbjct: 20 GDY----DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPN 75
Query: 63 -------TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRG 115
V Q+WDTAGQER+R++T+A++R A+G +L++D+T +QSF ++ W+ +L+
Sbjct: 76 GSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA 135
Query: 116 HAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174
+A +N I+LIGNK DL R V A+E A + + + ETSA NVE A T+L
Sbjct: 136 NAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLD 195
Query: 175 EIYR 178
I +
Sbjct: 196 LIMK 199
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 121/211 (57%), Gaps = 16/211 (7%)
Query: 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK--- 62
GDY DY+ K++ +GDS VGK+ L R+ N+F+ T+G++F+ K + D +
Sbjct: 6 GDY----DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 63 -------TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRG 115
V Q+WDTAG ER+R++T+A++R A+G +L++D+T +QSF ++ W+ +L+
Sbjct: 62 GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA 121
Query: 116 HA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174
+A +N I+LIGNK DL R V A+E A++ + + ETSA NVE + T+L
Sbjct: 122 NAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLD 181
Query: 175 EIYRIISKKSLTANDEHDV-AGNSNLLKGTR 204
I + + K V GNS L G +
Sbjct: 182 LIMKRMEKCVEKTQVPDTVNGGNSGKLDGEK 212
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 6/163 (3%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
+ KV+++GDS VGK+ L+ ++ +FS KATIG +F TK + +D + V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA----DKNIVIMLIGNKC 130
ER++++ A+YRGA +LV+D+T +F + W DE A +N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DLGSLRAVPTEDAQEFA-QRENLFFMETSALEATNVETAFLTV 172
D + R V T+ AQ + + N+ + ETSA EA NVE AF T+
Sbjct: 128 DFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 114/188 (60%), Gaps = 15/188 (7%)
Query: 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK--- 62
GDY DY+ K++ +GDS VGK+ L R+ N+F+ T+G++F+ K + D +
Sbjct: 6 GDY----DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 63 -------TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRG 115
V Q+WDTAG ER+R++T+A++R A+G +L++D+T +QSF ++ W+ +L+
Sbjct: 62 GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA 121
Query: 116 HAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174
+A +N I+LIGNK DL R V A+E A++ + + ETSA NVE + T+L
Sbjct: 122 NAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLD 181
Query: 175 EIYRIISK 182
I + + K
Sbjct: 182 LIMKRMEK 189
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 126 bits (317), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 6/163 (3%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
+ KV+++GDS VGK+ L+ ++ +FS KATIG +F TK + +D + V QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA----DKNIVIMLIGNKC 130
ER++++ A+YRGA +LV+D+T +F + W DE A +N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DLGSLRAVPTEDAQEFA-QRENLFFMETSALEATNVETAFLTV 172
DL + R V T+ AQ + + N+ + ETSA EA NVE AF T+
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 99/160 (61%), Gaps = 6/160 (3%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
+FKV+L+GD VGKS L+ R+ N+F TIGVEF K L +D V QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKC 130
ER+R++ + +YRG+ +L + + QSF +++ W E +AD ++ +++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 131 DLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
D+ S R V TE+AQ + + + + ETSA +ATNV AF
Sbjct: 127 DI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 90/157 (57%)
Query: 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
Y FKVVL+G+ VGK+ L+ R+ N+F+ T+ F TK L+I K V IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
QER+ A+ YYR + GA+LVYD+T SF + W+ ELR I + ++GNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
R V ++A+ +A+ TSA + +E FL
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 99/160 (61%), Gaps = 6/160 (3%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
+FKV+L+GD VGKS L+ R+ N+F TIGVEF K L +D V QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKC 130
ER+R++ + +YRG+ +L + + QSF +++ W E +AD ++ +++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 131 DLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
D+ S R V TE+AQ + + + + ETSA +ATNV AF
Sbjct: 129 DI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 90/157 (57%)
Query: 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
Y FKVVL+G+ VGK+ L+ R+ N+F+ T+ F TK L+I K V IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133
QER+ A+ YYR + GA+LVYD+T SF + W+ ELR I + ++GNK DL
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
R V ++A+ +A+ TSA + +E FL
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 175
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 110/188 (58%), Gaps = 15/188 (7%)
Query: 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK--- 62
GDY DY+ K++ +GDS VGK+ L R+ N+F+ T+G++F+ K + D +
Sbjct: 6 GDY----DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 63 -------TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRG 115
V Q+WDTAG ER+R++T+A++R A G +L +D+T +QSF ++ W +L+
Sbjct: 62 GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQA 121
Query: 116 HAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174
+A +N I+LIGNK DL R V A+E A++ + + ETSA NVE + T+L
Sbjct: 122 NAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLD 181
Query: 175 EIYRIISK 182
I + K
Sbjct: 182 LIXKRXEK 189
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 110/188 (58%), Gaps = 15/188 (7%)
Query: 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK--- 62
GDY DY+ K++ +GDS VGK+ L R+ N+F+ T+G++F+ K + D +
Sbjct: 6 GDY----DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 63 -------TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRG 115
V Q+WDTAG ER+R++T+A++R A G +L +D+T +QSF ++ W +L+
Sbjct: 62 GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQA 121
Query: 116 HAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174
+A +N I+LIGNK DL R V A+E A++ + + ETSA NVE + T+L
Sbjct: 122 NAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLD 181
Query: 175 EIYRIISK 182
I + K
Sbjct: 182 LIXKRXEK 189
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
+FK++L+GD VGKS L+ R+ N+F TIGVEF K L +D V QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKC 130
ER+R++ + +YRG+ +L + + QSF +++ W E +AD ++ +++GNK
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 131 DLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
D+ R V TE+AQ + + + + ETSA ++TNV AF
Sbjct: 131 DIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 102/162 (62%), Gaps = 7/162 (4%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAG 73
+ KV+++GDS VGK+ L+ R+ +++S KATIG +F TK +++D K Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN----IVIMLIGNK 129
QER++++ A+YRGA +LVYD+T SF+++ W DE HA+ N +++GNK
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 130 CDLGSLRAVPTE-DAQEFAQR-ENLFFMETSALEATNVETAF 169
D + + +E AQE A+ ++ TSA A NV+TAF
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAF 169
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
+ KV+L+GD VGKS L+ R+ N+F + TIGVEF + L +D + V QIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKC 130
ER++++ + +YRGA +L + + RQSF+++ W E +AD ++ +++GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 131 DLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAF 169
D R V TE+AQ + + ++ETSA + TNV AF
Sbjct: 127 DKED-RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 112/188 (59%), Gaps = 15/188 (7%)
Query: 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID----- 60
GDY DY+ K + +GDS VGK+ +L ++ +F+ T+G++F+ K +
Sbjct: 6 GDY----DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61
Query: 61 -----HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRG 115
+ + Q+WDTAG ER+R++T+A++R A+G +L++D+T QSF ++ W+ +L+
Sbjct: 62 GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM 121
Query: 116 HA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174
HA +N I+L GNK DL RAV E+A+E A++ + + ETSA TN+ A +L
Sbjct: 122 HAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLD 181
Query: 175 EIYRIISK 182
I + + +
Sbjct: 182 LIMKRMER 189
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 101/170 (59%), Gaps = 9/170 (5%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K+V++G+ AVGKS ++ R+ + F+ D K TIGV+F + + ++ + V+ +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
+ A+T AYYRGA +LV+ T R+SF+ ++ W +++ +I L+ NK DL
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDD 124
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSL 185
+ E+A+ A+R L F TS E NV +E+++ +++K L
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNV--------SEVFKYLAEKHL 166
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 40/202 (19%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI---------------- 59
+K VL+G+S+VGKS ++ R ++ F ++ TIG F T +++
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 60 --------------DHKT-------VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMT 98
H +K IWDTAGQERY ++ YYRGA A++V+D++
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 99 KRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETS 158
+ D W+++L+ N +I+L+ NK D + V + Q++AQ NL F++TS
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNKFQ-VDILEVQKYAQDNNLLFIQTS 184
Query: 159 ALEATNVETAFLTVLTEIYRII 180
A TN++ F + EIY+ I
Sbjct: 185 AKTGTNIKNIFYMLAEEIYKNI 206
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
KV+++G VGKS L +F +EF D + T ++ K + +D + V+ I DTAGQE
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 74
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSL 135
Y A+ Y+R G + V+ +T+ +SF A + ++ LR D+N+ +L+GNK DL
Sbjct: 75 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R V E+A+ A++ N+ ++ETSA NV+ F ++ EI
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
KV+++G VGKS L +F +EF D + T ++ K + +D + V+ I DTAGQE
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 78
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSL 135
Y A+ Y+R G + V+ +T+ +SF A + ++ LR D+N+ +L+GNK DL
Sbjct: 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R V E+A+ A++ N+ ++ETSA NV+ F ++ EI
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
KV+++G VGKS L +F +EF D + T ++ K + +D + V+ I DTAGQE
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 66
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSL 135
Y A+ Y+R G + V+ +T+ +SF A + ++ LR D+N+ +L+GNK DL
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R V E+A+ A++ N+ ++ETSA NV+ F ++ EI
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 2/161 (1%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
KV+++G VGKS L +F +EF D + T ++ K + +D + V+ I DTAGQE
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 64
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSL 135
Y A+ Y+R G + V+ +T+ +SF A + ++ LR D+N+ +L+GNK DL
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R V E+A+ A + N+ ++ETSA NV+ F ++ EI
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 93/161 (57%), Gaps = 2/161 (1%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
KV+++G VGKS L +F +EF D + T ++ K + +D + V+ I DTAG E
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 66
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSL 135
Y A+ Y+R G + V+ +T+ +SF A + ++ LR D+N+ +L+GNK DL
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R V E+A+ A++ N+ ++ETSA NV+ F ++ EI
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 95/162 (58%), Gaps = 3/162 (1%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
KV+++G VGKS L +F +EF D + T ++ K + +D + V+ I DTAG E
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 67
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKN-IVIMLIGNKCDLGS 134
Y A+ Y+R G +LV+ +T+ +SF A + ++ LR A+++ I ++++GNK DL
Sbjct: 68 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R VP E+A+ A+ + ++ETSA NV+ F ++ EI
Sbjct: 128 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 95/162 (58%), Gaps = 3/162 (1%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
KV+++G VGKS L +F +EF D + T ++ K + +D + V+ I DTAG E
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 63
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKN-IVIMLIGNKCDLGS 134
Y A+ Y+R G +LV+ +T+ +SF A + ++ LR A+++ I ++++GNK DL
Sbjct: 64 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R VP E+A+ A+ + ++ETSA NV+ F ++ EI
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+K+V++G VGKS L + +N F + TI ++ K + ID +T I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
Y A+ Y R G + V+ + +SF+ + + ++++ D +++ ++L+GNKCDL S
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R V T+ AQ+ A+ + F+ETSA V+ AF T++ EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+K+V++G VGKS L + +N F + TI ++ K + ID +T I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGS 134
Y A+ Y R G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R V + AQ+ A+ + ++ETSA VE AF T++ EI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+K+V++G VGKS L + +N F + TI ++ K + ID +T I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGS 134
Y A+ Y R G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R V + AQ+ A+ + ++ETSA VE AF T++ EI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+K+V++G VGKS L + +N F + TI ++ K + ID +T I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGS 134
Y A+ Y R G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R V + AQ+ A+ + ++ETSA VE AF T++ EI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+K+V++G VGKS L + +N F + TI ++ K + ID +T I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGS 134
Y A+ Y R G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R V + AQ+ A+ + ++ETSA VE AF T++ EI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+GD GK+ + R EF AT+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
+Y + YY A A++++D+T R ++ ++ W +L +NI I+L GNK D+
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
+ + F +++NL + + SA N E FL
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+GD GK+ + R EF AT+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
++ + YY A A++++D+T R ++ ++ W +L +NI I+L GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
+ + F +++NL + + SA N E FL
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 93/162 (57%), Gaps = 3/162 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+K+V++G VGKS L + +N F + TI ++ K + ID +T I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
Y A+ Y R G + V+ + +SF+ + + ++++ D +++ ++L+GNK DL S
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R V T+ AQ+ A+ + F+ETSA V+ AF T++ EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+GD GK+ + R EF AT+GVE + +K +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
++ + YY A A++++D+T R ++ ++ W +L +NI I+L GNK D+
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 122
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
+ + F +++NL + + SA N E FL
Sbjct: 123 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 155
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+GD GK+ + R EF AT+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
++ + YY A A++++D+T R ++ ++ W +L +NI I+L GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
+ + F +++NL + + SA N E FL
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 1/156 (0%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH-KTVKAQIWDTAGQ 74
+K+ LIGD VGK+ + R F + AT+G T D +K +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134
E+ + YY GA GA+L +D+T R + ++ARW+ E + I++ NK D+ +
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
+ + + E + +N + E SA A N FL
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFL 167
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+GD GK+ + R EF AT+GVE + +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
++ + YY A A++++D+T R ++ ++ W +L +NI I+L GNK D+
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 134
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
+ + F +++NL + + SA N E FL
Sbjct: 135 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 167
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+GD GK+ + R EF AT+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
++ + YY A A++++D+T R ++ ++ W +L +NI I+L GNK D+
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
+ + F +++NL + + SA N E FL
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+GD GK+ + R EF AT+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
++ + YY A A++++D+T R ++ ++ W +L +NI I+L GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
+ + F +++NL + + SA N E FL
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 19/194 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+GD GK+ + R EF AT+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
++ + YY A A++ +D+T R ++ ++ W +L +NI I+L GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY----------------RI 179
+ + F +++NL + + SA N E FL + ++ +
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAXPALAPPEV 187
Query: 180 ISKKSLTANDEHDV 193
+ +L A EHD+
Sbjct: 188 VXDPALAAQYEHDL 201
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+GD GK+ + R EF T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
++ + YY A A++++D+T R ++ ++ W +L +NI I+L GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
+ + F +++NL + + SA N E FL
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+GD GK+ + R EF T+GVE + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
++ + YY A A++++D+T R ++ ++ W +L +NI I+L GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
+ + F +++NL + + SA N E FL
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+GD GK+ + R EF ATIGVE + + +K +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
++ + YY A A++++D+T R ++ ++ W +L +NI I+L GNK D+
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKE- 122
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
R V + F +++NL + + SA N E FL
Sbjct: 123 RKVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPFL 156
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+GD GK+ + R EF ATIGVE + + +K +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
++ + YY A A++++D+T R ++ ++ W +L +NI I+L GNK D+
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKE- 123
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
R V + F +++NL + + SA N E FL
Sbjct: 124 RKVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPFL 157
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+GD GK+ + R EF AT+GVE + +K +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
++ + YY A A++++D+T R ++ ++ W +L +NI I+L GNK D+
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 125
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
+ + F +++NL + + SA N E FL
Sbjct: 126 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 158
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+GD GK+ + R EF AT+GVE + +K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
++ + YY A A++++D+T R ++ ++ W +L +NI I+L GNK D+
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 131
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
+ + F +++NL + + SA N E FL
Sbjct: 132 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 164
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 4/168 (2%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAGQ 74
K+V++GD A GK+ L FA+ F K TIG++F + +++ + V QIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARW---LDELRGHADKNIVIMLIGNKCD 131
+ Y GA G +LVYD+T QSF+++ W + ++ ++ ++ L+GNK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179
L +R + E F Q SA +V F V EI I
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+GD GK+ + R EF ATIGVE + + +K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
++ + YY A A++++D+T R ++ ++ W +L +NI I+L GNK D+
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKER 131
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
+ F +++NL + + SA N E FL
Sbjct: 132 KV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFL 164
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+GD GK+ + R EF AT+GVE + +K +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
++ + YY A A++++D+T R ++ ++ W +L +NI I+L GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 129
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
+ + F +++NL + + SA N E FL
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
FK+VL+GD GK+ + R E AT+GVE + +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135
++ + YY A A++++D+T R ++ ++ W +L +NI I+L GNK D+
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 134
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170
+ + F +++NL + + SA N E FL
Sbjct: 135 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 167
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 3/165 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+K+V++G VGKS L +F + F + TI ++ K + +D + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
++ A+ Y + G LVY +T + +F+ + ++ LR +++ ++L+GNKCDL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 135 LRAVPTEDAQEFA-QRENLFFMETSALEATNVETAFLTVLTEIYR 178
R V E Q A Q N F+E+SA NV F ++ +I R
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+K+V++G VGKS L +F + F TI ++ K + +D + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
++ A+ Y + G LVY +T + +F+ + ++ LR ++ ++L+GNKCDL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 135 LRAVPTEDAQEFA-QRENLFFMETSALEATNVETAFLTVLTEIYR 178
R V E Q A Q N F+E+SA NV F ++ +I R
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 3/165 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+K+V++G VGKS L +F + F TI ++ K + +D + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
++ A+ Y + G LVY +T + +F+ + ++ LR +++ ++L+GNKCDL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 135 LRAVPTEDAQEFA-QRENLFFMETSALEATNVETAFLTVLTEIYR 178
R V E Q A Q N F+E+SA NV F ++ +I R
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+K+V++G VGKS L +F + F TI ++ K + +D + +I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGS 134
++ A+ Y + G LVY +T + +F+ + ++ LR ++ ++L+GNKCDL
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 135 LRAVPTEDAQEFA-QRENLFFMETSALEATNVETAFLTVLTEIYR 178
R V E Q A Q N F+E+SA NV F ++ +I R
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 169
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 2/164 (1%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
KVV++G VGK+ L +F EFS T+ + +K +++ + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIMLIGNKCDLGSL 135
Y + ++ G G +LVY +T SF + +L GH + ++L+GNK DL
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179
R V + ++ A+ FME+SA E + F V+ EI R+
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 4/164 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDE 190
A+ + ++ETSA VE AF T++ EI R + L DE
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI-RQHKLRKLNPPDE 176
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 140
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 6/156 (3%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L +F ++ F D TI + TK ID + + I DTAGQE + A+ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKN-IVIMLIGNKCDLGSLRAVPTEDAQEF 146
G +LV+ +T R SF+ + ++ ++ D++ ++LIGNK DL R V E+ Q+
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEIYRIISK 182
A++ + +ME SA NV+ AF E+ R+I K
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAF----HELVRVIRK 168
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF + + ++++ D + V M L+GNKCDL + R V T+ A E
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHEL 151
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK 183
A+ + F+ETSA VE AF T++ EI + KK
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAG E Y A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + + ++++ D +++ ++L+GNKCDL S R V T+ AQ+
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDL 151
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + F+ETSA V+ AF T++ EI
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K V +GD AVGK+ +L + N F D T+ F + +D TV +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQED 66
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + YRGA +L + + + S++++A +W+ ELR H + I+L+G K DL
Sbjct: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDL 122
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 90/171 (52%), Gaps = 9/171 (5%)
Query: 17 KVVLIGDSAVGKSQLLARFAR--NEFSVDSKATIGVEFQTKTLSIDHKTVKAQIW--DTA 72
KV ++G++ VGKS L++ F ++F D T GVE ++I TV +++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDEL---RGHADKNIVIMLIGNK 129
G + Y+ S Y+ G A+LV+D++ +SF+ W + L R ++ + +L+ NK
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 130 CDLGSLR-AVPTEDAQEFAQRENLFFMETSA-LEATNVETAFLTVLTEIYR 178
DL R V + AQ++A L F + SA + + FL++ T YR
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L +F ++ F D TI + TK S+D + I DTAGQE + A+ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF 146
G +LV+ + RQSF+ + + + LR + ++L+GNK DL S R VP +A F
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 147 AQRENLFFMETSALEATNVETAF 169
++ + E SA NV+ AF
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAF 163
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + +I ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 139
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 14/169 (8%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K V +GD AVGK+ +L + N F D T+ F + +D TV +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS- 134
Y + YRGA +L + + + S++++ +WL EL+ H I I+L+G K DL
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLRDD 125
Query: 135 ---LRAVPTEDAQEFAQRENL-------FFMETSALEATNVETAFLTVL 173
L+ P + AQ E L ++E S+ NV+ F T +
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAI 174
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GN+CDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + +I ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
K+ L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DT GQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DT GQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAG+E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ E
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREF 163
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + + ++++ D +++ ++L+GNK DL S R V T+ AQ+
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + F+ETSA V+ AF T++ EI
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + + ++++ D +++ ++L+GNK DL S R V T+ AQ+
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + F+ETSA V+ AF T++ EI
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 5/161 (3%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
++V + G VGKS L+ RF + F T+ ++ + +S D QI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLD---ELRGHADKNIVIMLIGNKCDL 132
++ A+ +LVY +T RQS + + + E++G + +I IML+GNKCD
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE-SIPIMLVGNKCDE 121
Query: 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173
R V + +A+ A+ FMETSA NV+ F +L
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAG E Y A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V +GD AVGK+ +L + N+F D T+ F + +++D + V +WDTAGQE
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQE 68
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCDL 132
Y + YRGA +L + + + S+++ + +W+ ELR A N+ I+L+G K DL
Sbjct: 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDL 125
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 8/166 (4%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+ + G + VGKS L+ RF F + T+ ++ + +ID + V +I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQED 88
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDH---MARWLDELRGHADKNIVIMLIGNKCDLG 133
+ R G +LVYD+T R SF+ + LDE++ KN+ ++L+GNK DL
Sbjct: 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK--KPKNVTLILVGNKADLD 145
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEAT-NVETAFLTVLTEIYR 178
R V TE+ ++ A F E SA N+ F + E+ R
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K V +GD AVGK+ LL + N F D T+ F + ++ TV +WDTAGQE
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQED 68
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + YRGA +L + + + S+++++ +W+ EL+ H + I+L+G K DL
Sbjct: 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDL 124
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNKCDL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNK DL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 76/167 (45%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
KVVL+GD GK+ LL FA F T+ E L + K V IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-FERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDL--- 132
Y + +Y A +L +D+T SFD++ RW E+ H K + I+++G K DL
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKTDLRKD 153
Query: 133 ---------GSLRAVPTEDAQEFAQREN-LFFMETSALEATNVETAF 169
L V QE A+ + ++E SA NV F
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNK DL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+ ++G +VGKS L +F +F + TI F TK ++++ + Q+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK-NIVIMLIGNKCDLGSL 135
Y Y G +LVY +T +SF+ + +L K I IML+GNK DL
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175
R + E+ + A+ N F+E+SA E F ++ E
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 2/164 (1%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+ ++G +VGKS L +F +F TI F TK ++++ + Q+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK-NIVIMLIGNKCDLGSL 135
Y Y G +LVY +T +SF+ + +L K I IML+GNK DL
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179
R + E+ + A+ N F+E+SA E F ++ E +I
Sbjct: 122 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKI 165
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 2/160 (1%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+ ++G +VGKS L +F +F TI F TK ++++ + Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK-NIVIMLIGNKCDLGSL 135
Y Y G +LVY +T +SF+ + +L K I IML+GNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175
R + E+ + A+ N F+E+SA E F ++ E
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTA QE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNK DL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L + +N F + TI ++ K + ID +T I DTA QE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVPTEDAQEF 146
G + V+ + +SF+ + ++ ++++ D + V M L+GNK DL + R V + AQ+
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA-RTVESRQAQDL 133
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ + ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 2/160 (1%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+ ++G +VGKS L +F +F TI F TK ++++ + Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK-NIVIMLIGNKCDLGSL 135
Y Y G +LVY +T +SF+ + +L K I IML+GNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175
R + E+ + A+ N F+E+SA E F ++ E
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWD 70
K+ K V++GD AVGK+ LL + N F + T+ + + +D K V +WD
Sbjct: 3 KLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWD 61
Query: 71 TAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNK 129
TAGQE Y + Y +++ + + SF+++ A+W E+R H N I+L+G K
Sbjct: 62 TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTK 120
Query: 130 CD----------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
D L + P Q A + + ++E SAL ++T F
Sbjct: 121 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
Y + Y +++ + + SF+++ A+W E+R H N I+L+G K D
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 123
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
L + P Q A + + ++E SAL ++T F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
Y + Y +++ + + SF+++ A+W E+R H N I+L+G K D
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
L + P Q A + + ++E SAL ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
Y + Y +++ + + SF+++ A+W E+R H N I+L+G K D
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
L + P Q A + + ++E SAL ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 1 MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
M NLY Q I K V++GD AVGK+ LL + N FS + T+ + + +D
Sbjct: 4 MENLYFQ-GQAI----KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VD 57
Query: 61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADK 119
K V +WDTAGQE Y + Y ++ + + SF+++ A+W E+R H
Sbjct: 58 GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-P 116
Query: 120 NIVIMLIGNKCD----------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVE 166
N I+L+G K D L + P Q A + + ++E SAL ++
Sbjct: 117 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 176
Query: 167 TAF 169
T F
Sbjct: 177 TVF 179
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 76/144 (52%), Gaps = 3/144 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L +F + F D TI + T ID++ + DTAGQE + A+ Y R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF 146
G ++VY +T + SF+H+ R+ LR ++ ++L+ NK DL LR V + +E
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 147 AQRENLFFMETSALEAT-NVETAF 169
A + N+ ++ETSA + NV+ F
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTF 168
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 76/144 (52%), Gaps = 3/144 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L +F + F D TI + T ID++ + DTAGQE + A+ Y R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF 146
G ++VY +T + SF+H+ R+ LR ++ ++L+ NK DL LR V + +E
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 147 AQRENLFFMETSALEAT-NVETAF 169
A + N+ ++ETSA + NV+ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K VL+GD AVGK+ L+ + N + + T F + +S+D + V+ Q+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDE 80
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL--- 132
+ + Y +L + + SF +++ +W+ E+R H K +I L+G + DL
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPII-LVGTQSDLRED 139
Query: 133 ---------GSLRAVPTEDAQEFAQR-ENLFFMETSALEATNVETAF 169
+ VP E A+ A+ + ++E SAL N++ F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 1 MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
M NLY Q I K V++GD AVGK+ LL + N F + T+ + + +D
Sbjct: 21 MENLYFQ-GQAI----KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VD 74
Query: 61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADK 119
K V +WDTAGQE Y + Y ++ + + SF+++ A+W E+R H
Sbjct: 75 GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-P 133
Query: 120 NIVIMLIGNKCD----------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVE 166
N I+L+G K D L + P Q A + + ++E SAL ++
Sbjct: 134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 193
Query: 167 TAF 169
T F
Sbjct: 194 TVF 196
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
Y + Y ++ + + SF+++ A+W E+R H N I+L+G K D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
L + P Q A + + ++E SAL ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
Y + Y ++ + + SF+++ A+W E+R H N I+L+G K D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
L + P Q A + + ++E SAL ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
Y + Y ++ + + SF+++ A+W E+R H N I+L+G K D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
L + P Q A + + ++E SAL ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
Y + Y ++ + + SF+++ A+W E+R H N I+L+G K D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
L + P Q A + + ++E SAL ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
Y + Y ++ + + SF+++ A+W E+R H N I+L+G K D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
L + P Q A + + ++E SAL ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
Y + Y ++ + + SF+++ A+W E+R H N I+L+G K D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
L + P Q A + + ++E SAL ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 77/144 (53%), Gaps = 3/144 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L +F + F + TI ++ T ID++ + DTAGQE + A+ Y R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF 146
G ++VY +T + SF+H+ R+ LR ++ ++L+ NK DL LR V + +E
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 147 AQRENLFFMETSALEAT-NVETAF 169
A + N+ ++ETSA + NV+ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 69
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
Y + Y ++ + + SF+++ A+W E+R H N I+L+G K D
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 128
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
L + P Q A + + ++E SAL ++T F
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 81
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
Y + Y ++ + + SF+++ A+W E+R H N I+L+G K D
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 140
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
L + P Q A + + ++E SAL ++T F
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 3/144 (2%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L +F + F + TI + T ID++ + DTAGQE + A+ Y R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF 146
G ++VY +T + SF+H+ R+ LR ++ ++L+ NK DL LR V + +E
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 147 AQRENLFFMETSALEAT-NVETAF 169
A + N+ ++ETSA + NV+ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL F++++F T+ E + +D K V+ +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
Y + Y ++ + + S +++ +W E++ H N+ I+L+GNK D
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 128
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
L ++ P E+ ++ A R F +ME SA V F
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL F++++F T+ E + +D K V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
Y + Y ++ + + S +++ +W E++ H N+ I+L+GNK D
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
L ++ P E+ ++ A R F +ME SA V F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL F++++F T+ E + +D K V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
Y + Y ++ + + S +++ +W E++ H N+ I+L+GNK D
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
L ++ P E+ ++ A R F +ME SA V F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL F++++F T+ E + +D K V+ +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
Y + Y ++ + + S +++ +W E++ H N+ I+L+GNK D
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
L ++ P E+ ++ A R F +ME SA V F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL F++++F T+ E + +D K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
Y + Y ++ + + S +++ +W E++ H N+ I+L+GNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
L ++ P E+ ++ A R F +ME SA V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL F++++F T+ E + +D K V+ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
Y + Y ++ + + S +++ +W E++ H N+ I+L+GNK D
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
L ++ P E+ ++ A R F +ME SA V F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL F++++F T+ E + +D K V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
Y + Y ++ + + S +++ +W E++ H N+ I+L+GNK D
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
L ++ P E+ ++ A R F +ME SA V F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
Y + Y ++ + + S++++ A+W E+R H +I L+G K D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFA---QRENLFFMETSALEATNVETAF 169
L + P Q A + +++ ++E SAL ++T F
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
+ K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD-- 131
E Y + Y ++ + + SF H+ A+W E+R H N I+L+G K D
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 132 --------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
L + P Q A + + ++E SAL ++T F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL F++++F T+ E + +D K V+ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
Y + Y ++ + + S +++ +W E++ H N+ I+L+GNK D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDLRQD 144
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
L ++ P +E+ ++ A R + F ++E SA V F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 1 MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
M NLY Q I K V++GD AVGK+ LL + N + T+ + + +D
Sbjct: 21 MENLYFQ-GQAI----KCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VD 74
Query: 61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADK 119
K V +WDTAGQE Y + Y ++ + + SF+++ A+W E+R H
Sbjct: 75 GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-P 133
Query: 120 NIVIMLIGNKCD----------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVE 166
N I+L+G K D L + P Q A + + ++E SAL ++
Sbjct: 134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 193
Query: 167 TAF 169
T F
Sbjct: 194 TVF 196
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
+ K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDL 132
E Y + Y ++ + + SF H+ A+W E+R H N I+L+G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDL 271
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
+ K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDL 132
E Y + Y ++ + + SF H+ A+W E+R H N I+L+G K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDL 271
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS 134
Y + Y ++ + + SF+++ A+W E+R H + I+L+G K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 121
Query: 135 -------LR---AVPTEDAQEFAQ-RE--NLFFMETSALEATNVETAF 169
LR P Q A RE ++ ++E SAL ++T F
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS 134
Y + Y ++ + + SF+++ A+W E+R H + I+L+G K DL
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 135 -------LR---AVPTEDAQEFAQ-RE--NLFFMETSALEATNVETAF 169
LR P Q A RE ++ ++E SAL ++T F
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 68
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
Y + Y ++ + + S++++ A+W E+R H +I L+G K D
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRD 127
Query: 132 -------LGSLRAVPTEDAQEFA---QRENLFFMETSALEATNVETAF 169
L + P Q A + +++ ++E SAL ++T F
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL F++++F T+ E + +D K V+ +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
Y + Y ++ + + S +++ +W E++ H N+ I+L+GNK D
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
L ++ P E+ ++ A R F +ME SA V F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS 134
Y + Y ++ + + SF+++ A+W E+R H + I+L+G K DL
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 135 -------LR---AVPTEDAQEFAQ-RE--NLFFMETSALEATNVETAF 169
LR P Q A RE ++ ++E SAL ++T F
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 69
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
Y + Y ++ + + S++++ A+W E+R H +I L+G K D
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRD 128
Query: 132 -------LGSLRAVPTEDAQEFA---QRENLFFMETSALEATNVETAF 169
L + P Q A + +++ ++E SAL ++T F
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 1 MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
M NLY Q I K V++GD AVGK+ LL + N F + T+ + + +D
Sbjct: 21 MENLYFQ-GQAI----KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VD 74
Query: 61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADK 119
K V +WDTAG E Y + Y ++ + + SF+++ A+W E+R H
Sbjct: 75 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-P 133
Query: 120 NIVIMLIGNKCD----------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVE 166
N I+L+G K D L + P Q A + + ++E SAL ++
Sbjct: 134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 193
Query: 167 TAF 169
T F
Sbjct: 194 TVF 196
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL F++++F T+ E + +D K V+ +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
Y Y ++ + + S +++ +W E++ H N+ I+L+GNK D
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 132 ------LGSLRAVPTEDAQ--EFAQRENLF-FMETSALEATNVETAF 169
L ++ P + A+ + A R F +ME SA V F
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL F++++F T+ E + +D K V+ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
Y + Y ++ + + S +++ +W E++ H N+ I+L+GNK D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 144
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
L ++ P +E+ ++ A R + F ++E SA V F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 3/129 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL F+++EF T+ E + +D K V+ +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL 135
Y + Y ++ + + S +++ +W+ E++ H N+ I+L+ NK DL S
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 136 RAVPTEDAQ 144
V TE A+
Sbjct: 145 EHVRTELAR 153
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 6/150 (4%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L+ RF + F TI ++ + +S D QI DT G ++ A+
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 88 AVGAMLVYDMTKRQSFDHMA---RWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQ 144
+LV+ +T +QS + + + + +++G + +I +ML+GNKCD + R V T +AQ
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPVMLVGNKCD-ETQREVDTREAQ 137
Query: 145 EFAQRENLFFMETSALEATNVETAFLTVLT 174
AQ FMETSA NV+ F +LT
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELLT 167
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
Y + Y ++ + + SF+++ A+W E+R H N I+L+G K D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
L + P Q A + + ++E SAL ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
Y + Y ++ + + SF+++ A+W E+R H N I+L+G K D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
L + P Q A + + ++E SAL ++T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 65
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCD--- 131
Y + Y ++ + + SF+++ A+W E+R H N I+L+G K D
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 124
Query: 132 -------LGSLRAVPTEDAQEFAQRENLF---FMETSALEATNVETAF 169
L + P Q A + + ++E SAL ++T F
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 79/187 (42%), Gaps = 35/187 (18%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N F + T+ + + +D K V +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKR-------------------QSFDHM-ARWLDELRG 115
Y + Y VG D+T R SF+++ A+W E+R
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 116 HADKNIVIMLIGNKCD----------LGSLRAVPTEDAQEFAQRENLF---FMETSALEA 162
H N I+L+G K D L + P Q A + + ++E SAL
Sbjct: 125 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 163 TNVETAF 169
++T F
Sbjct: 184 RGLKTVF 190
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 5/127 (3%)
Query: 7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKA 66
D NQ + K+V++GDS GK+ LL FA++ F + T+ E T + ID + ++
Sbjct: 22 DPNQNVK--CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIEL 78
Query: 67 QIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIML 125
+WDT+G Y V Y + ++ +D+++ ++ D + +W E++ N ++L
Sbjct: 79 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLL 137
Query: 126 IGNKCDL 132
+G K DL
Sbjct: 138 VGCKSDL 144
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 5/127 (3%)
Query: 7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKA 66
D NQ + K+V++GDS GK+ LL FA++ F + T+ E T + ID + ++
Sbjct: 17 DPNQNVK--CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIEL 73
Query: 67 QIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIML 125
+WDT+G Y V Y + ++ +D+++ ++ D + +W E++ N ++L
Sbjct: 74 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLL 132
Query: 126 IGNKCDL 132
+G K DL
Sbjct: 133 VGCKSDL 139
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL ++++F T+ E + +D K V+ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
Y + Y ++ + + S +++ +W E++ H N+ I+L+GNK D
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
L ++ P E+ ++ A R F +ME SA V F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL ++++F T+ E + +D K V+ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
Y + Y ++ + + S +++ +W E++ H N+ I+L+GNK D
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
L ++ P E+ ++ A R F +ME SA V F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL ++++F T+ E + +D K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
Y + Y ++ + + S +++ +W E++ H N+ I+L+GNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
L ++ P E+ ++ A R F +ME SA V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL ++++F T+ E + +D K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
Y + Y ++ + + S +++ +W E++ H N+ I+L+GNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
L ++ P E+ ++ A R F +ME SA V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL ++++F T+ E + +D K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
Y + Y ++ + + S +++ +W E++ H N+ I+L+GNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
L ++ P E+ ++ A R F +ME SA V F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
+++VVL+GD VGK+ L + FA + D +G + +TL++D + + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQ-ERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 75 ERYRAVTS--AYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIMLIGNKCD 131
E+ S + +G ++VY + R SF+ + +LR H ++ I+L+GNK D
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169
L R V E+ + A + F+ETSA NV F
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GDS GK+ LL FA++ F + T+ E T + ID + ++ +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCDL 132
Y V Y + ++ +D+++ ++ D + +W E++ N ++L+G K DL
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDL 123
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL ++++F T+ E + +D K V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
Y + Y ++ + + S +++ +W E++ H N+ I+L+GNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 124
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
L ++ P +E+ ++ A R + F ++E SA V F
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATI-GVEFQTKTLSIDHKT---VKAQIWDT 71
++VVLIG+ VGKS L FA S+DS + G + +TL +D ++ + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 72 AGQERY-----RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIML 125
G+ + V AY ++VY +T R SF+ + +LR ++I I+L
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
+GNK DL R V + + A + F+ETSA NV+ F ++ ++
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATI-GVEFQTKTLSIDHKT---VKAQIWDT 71
++VVLIG+ VGKS L FA S+DS + G + +TL +D ++ + +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 72 AGQERY-----RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIML 125
G+ + V AY ++VY +T R SF+ + +LR ++I I+L
Sbjct: 98 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
+GNK DL R V + + A + F+ETSA NV+ F ++ ++
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL ++++F T+ E + +D K V+ +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD---- 131
Y + Y ++ + + S +++ +W E++ H N+ I+L+GNK D
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 132 ------LGSLRAVP--TEDAQEFAQRENLF-FMETSALEATNVETAF 169
L ++ P E+ ++ A R F +ME SA V F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 2/150 (1%)
Query: 28 KSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87
KS L +F F TI +F K + +D +I DTAG E++ ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 88 AVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF 146
G +LVY + +QSF + D+ +R + + ++L+GNK DL S R V + + +
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176
A+ FMETSA T V+ F ++ ++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATI-GVEFQTKTLSIDHKT---VKAQIWDT 71
++VVLIG+ VGKS L FA S+DS + G + +TL +D ++ + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 72 AGQERY-----RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIML 125
G+ + V AY ++VY +T R SF+ + +LR ++I I+L
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
+GNK DL R V + + A + F+ETSA NV+ F ++ ++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATI-GVEFQTKTLSIDHKT---VKAQIWDT 71
++VVLIG+ VGKS L FA S+DS + G + +TL +D ++ + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 72 AGQERY-----RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIML 125
G+ + V AY ++VY +T R SF+ + +LR ++I I+L
Sbjct: 67 KGENEWLHDHXMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
+GNK DL R V + + A + F+ETSA NV+ F ++ ++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K+V++GD AVGK+ LL F++ E T+ F + + ++ +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y + +L + + R SFD+++ +W E++ + D + L+G K DL
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDL 139
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K+V++GD AVGK+ LL F++ E T+ F + + ++ +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y + +L + + R SFD+++ +W E++ + D + L+G K DL
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDL 138
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 3 NLY--GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
NLY G Q + K+VL+GD GK+ +L A++ + T+ E T L +
Sbjct: 13 NLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETE 71
Query: 61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADK 119
+ V+ +WDT+G Y V Y + +L +D+++ ++ D + +W E+ +
Sbjct: 72 EQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS 131
Query: 120 NIVIMLIGNKCDL 132
V +LIG K DL
Sbjct: 132 TRV-LLIGCKTDL 143
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
+ K V++GD AVGK+ LL +A + F + T+ + ++++ K ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCD-- 131
E Y + Y ++ + + SF ++ W+ EL+ +A N+ +LIG + D
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 132 --------LGSLRAVP--TEDAQEFAQREN-LFFMETSALEATNVETAF 169
L ++ P E Q+ A+ ++E SAL ++T F
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Query: 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVK 65
G Q + K+VL+GD GK+ +L A++ + T+ E T L + + V+
Sbjct: 1 GRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVE 59
Query: 66 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIM 124
+WDT+G Y V Y + +L +D+++ ++ D + +W E+ + V +
Sbjct: 60 LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-L 118
Query: 125 LIGNKCDL 132
LIG K DL
Sbjct: 119 LIGCKTDL 126
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 14/181 (7%)
Query: 3 NLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK 62
NLY + + D +FKV+L+G+S VGKS L F + + + + + +D +
Sbjct: 13 NLY--FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKE 70
Query: 63 TVKA---QIW---DTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-G 115
V IW D G R + + ++V+ +T R+SF + L LR G
Sbjct: 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAG 125
Query: 116 HADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175
++ ++L+GNK DL R V E+ + A + +ETSA N F + +
Sbjct: 126 RPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQ 185
Query: 176 I 176
I
Sbjct: 186 I 186
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+VL+GD GK+ +L A++ + T+ E T L + + V+ +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 71
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCDL 132
Y V Y + +L +D+++ ++ D + +W E+ + V +LIG K DL
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDL 127
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G A GK+ +L + + SV + T+G +T T +K VK +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQD 377
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL 132
+ R + YY G G + V D R D + L + + ++ +I++ NK DL
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 435
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G A GK+ +L + + SV + T+G +T T +K VK +WD GQ+
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQD 68
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
+ R + YY G G + V D R D + L + + ++ +I++ NK DL
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
Query: 135 LRAVPTEDAQEFAQ----RENLFFMETSALEATNVETAFLTVLTEIYR 178
A+ + QE R+ ++++ S + + LT LT Y+
Sbjct: 129 --AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G A GK+ +L + + SV + T+G +T T +K VK +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQD 55
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
+ R + YY G G + V D R D + L + + ++ +I++ NK DL
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 135 LRAVPTEDAQEFAQ----RENLFFMETSALEATNVETAFLTVLTEIYR 178
A+ + QE R+ ++++ S + + LT LT Y+
Sbjct: 116 --AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 161
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 123
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G A GK+ +L + + SV + T+G +T T +K VK +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQD 67
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
+ R + YY G G + V D R D + L + + ++ +I++ NK DL
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127
Query: 135 LRAVPTEDAQEFAQ----RENLFFMETSALEATNVETAFLTVLTEIYR 178
A+ + QE R+ ++++ S + + LT LT Y+
Sbjct: 128 --AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 129
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 121
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 63
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 120
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G A GK+ +L + + SV + T+G +T T +K VK +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQD 55
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
+ R + YY G G + V D R D + L + + ++ +I++ NK DL
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 135 LRAVPTEDAQE 145
A+ + QE
Sbjct: 116 --AMKPHEIQE 124
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 122
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 121
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 126
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 122
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 22/138 (15%)
Query: 1 MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
SNL+G+ +I +++G GK+ +L + E + + TIG +T +
Sbjct: 9 FSNLFGNKEMRI------LMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQ 57
Query: 61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR----QSFDHMARWL--DELR 114
+K + +WD GQ+R R++ YYR G + V D R ++ + M R L DELR
Sbjct: 58 YKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELR 117
Query: 115 GHADKNIVIMLIGNKCDL 132
N V ++ NK DL
Sbjct: 118 -----NAVWLVFANKQDL 130
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 126
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K+V++GD A GK+ LL ++ +F T+ E + +D + V+ +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y + ++ + + S +++ +W+ E+ H + + I+L+G K DL
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVGCKVDL 126
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 16/129 (12%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G A GK+ +L + E V + TIG +T +++K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL------DELRGHADKNIVIMLIGNK 129
R R + Y++ G + V D R+ +A L DELR + V++L NK
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELR-----DAVLLLFANK 127
Query: 130 CDLGSLRAV 138
DL + A+
Sbjct: 128 QDLPNAMAI 136
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 10/166 (6%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
+++ +G A GK+ +L + + SV + T+G +T T +K VK +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQDK 56
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE-LRGHADKNIVIMLIGNKCDLGSL 135
R + YY G G + V D R D + L + ++ +I++ NK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDA 116
Query: 136 RAVPTEDAQEFAQ---RENLFFMETSALEATNVETAFLTVLTEIYR 178
P E ++ R+ ++++ S + + LT LT Y+
Sbjct: 117 XK-PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 161
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
V+KV+L+G VGKS L F E +++A G + +++ +D + ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 64
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIMLIGNKCDLG 133
+ R + ++VY +T + SF+ + +LR ++ I+L+GNK DL
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R V ++ + A + F+ETSA NV+ F V+ +I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
V+KV+L+G VGKS L F E +++A G + +++ +D + ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 59
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIMLIGNKCDLG 133
+ R + ++VY +T + SF+ + +LR ++ I+L+GNK DL
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R V ++ + A + F+ETSA NV+ F V+ +I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
V+KV+L+G VGKS L F E +++A G + +++ +D + ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 64
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIMLIGNKCDLG 133
+ R + ++VY +T + SF+ + +LR ++ I+L+GNK DL
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 134 SLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
R V ++ + A + F+ETSA NV+ F V+ +I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N+F + T+ + T+ I + + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 22/138 (15%)
Query: 1 MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
SNL+G+ +I +++G GK+ +L + E + + TIG +T +
Sbjct: 9 FSNLFGNKEMRI------LMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQ 57
Query: 61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR----QSFDHMARWL--DELR 114
+K + +WD GQ+R R++ YYR G + V D R ++ + M R L DELR
Sbjct: 58 YKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELR 117
Query: 115 GHADKNIVIMLIGNKCDL 132
N ++ NK DL
Sbjct: 118 -----NAAWLVFANKQDL 130
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K V++GD AVGK+ LL + N+F + + + T+ I + ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 16/173 (9%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKA---QIW 69
D VFKV+L+G+S VGKS L F + + + + + +D + V IW
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 70 ---DTAG--QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVI 123
D G Q+ A+ ++V+ +T R+SF + L LR G ++ +
Sbjct: 70 EQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV 122
Query: 124 MLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
+L+GNK DL R V E+ + A + +ETSA N F + +I
Sbjct: 123 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N+ + T+ + T+ I + ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G A GK+ +L + + SV + T+G +T T +K VK +WD G +
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGLD 68
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
+ R + YY G G + V D R D + L + + ++ +I++ NK DL
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
Query: 135 LRAVPTEDAQEFAQ----RENLFFMETSALEATNVETAFLTVLTEIYR 178
A+ + QE R+ ++++ S + + LT LT Y+
Sbjct: 129 --AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G A GK+ +L + + SV + T+G +T T +K VK +WD G +
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGLD 57
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
+ R + YY G G + V D R D + L + + ++ +I++ NK DL
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 117
Query: 135 LRAVPTEDAQE 145
A+ + QE
Sbjct: 118 --AMKPHEIQE 126
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
K V++GD AVGK+ LL + N+F + T+ + T+ I + ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132
Y + Y ++ + + SF+++ +W+ E+ H K +L+G + DL
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 123
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G A GK+ +L + + SV + T+G +T T +K VK +WD G +
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGLD 58
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS 134
+ R + YY G G + V D R D + L + + ++ +I++ NK DL
Sbjct: 59 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 118
Query: 135 LRAVPTEDAQE 145
A+ + QE
Sbjct: 119 --AMKPHEIQE 127
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 16/171 (9%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDT--- 71
VFKV+L+G+S VGKS L F + + + + + +D + V ++D
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 72 --AG---QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELR-GHADKNIVIML 125
AG Q+ A+ ++V+ +T R+SF + L LR G ++ ++L
Sbjct: 62 GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 114
Query: 126 IGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176
+GNK DL R V E+ + A + +ETSA N F + +I
Sbjct: 115 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 10/162 (6%)
Query: 1 MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
+S L+ QK D +++++G A GK+ +L + E V + TIG +T ++
Sbjct: 5 VSRLFNRLFQKKD--VRILMVGLDAAGKTTILYKVKLGEV-VTTIPTIGFNVET----VE 57
Query: 61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-K 119
+ + +WD GQ++ R + YY G + V D R+ D L + + K
Sbjct: 58 FRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELK 117
Query: 120 NIVIMLIGNKCDLGSLRAVP--TEDAQEFAQRENLFFMETSA 159
+ +I++ NK DL + + TE RE +F++++
Sbjct: 118 DAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTC 159
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
+++++G A GK+ +L + E V + TIG +T +++K + +WD GQ++
Sbjct: 22 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 76
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKR----QSFDHMARWL--DELRGHADKNIVIMLIGNKC 130
R + Y++ G + V D R ++ D + R L DELR + V+++ NK
Sbjct: 77 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR-----DAVLLVFANKQ 131
Query: 131 DL 132
DL
Sbjct: 132 DL 133
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
++ L+G GK+ + A +FS D T+G F + ++ + T+K IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK----NIVIMLIGNKCD 131
R+R++ Y RG + + D R+ + +EL DK I ++++GNK D
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASR---NELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 132 L 132
L
Sbjct: 136 L 136
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 16/123 (13%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G GK+ +L + E + + TIG +T + +K + +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKR----QSFDHMARWL--DELRGHADKNIVIMLIGNK 129
R R++ YYR G + V D R ++ + M R L DELR N ++ NK
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELR-----NAAWLVFANK 110
Query: 130 CDL 132
DL
Sbjct: 111 QDL 113
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 18/133 (13%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G A GK+ +L + E V + TIG +T +++K + +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKR----QSFDHMARWL--DELRGHADKNIVIMLIGNK 129
+ R + Y++ G + V D R +S D + + L DELR + V+++ NK
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELR-----DAVLLVFANK 139
Query: 130 CDLGSLRAVPTED 142
D+ + A+P +
Sbjct: 140 QDMPN--AMPVSE 150
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G A GK+ +L + E V + TIG +T +++K + +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 55
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSF----DHMARWL--DELRGHADKNIVIMLIGNK 129
+ R + Y++ G + V D R+ + + R L DELR + V+++ NK
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR-----DAVLLVFANK 110
Query: 130 CDL 132
DL
Sbjct: 111 QDL 113
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
++ L+G GK+ + A +F+ D T+G F + ++ + T+K +WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 78
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK----NIVIMLIGNKCD 131
R+R++ Y RG + + D ++ + +EL DK I ++++GNK D
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASK---NELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 132 L-GSLRAVPTEDAQEFAQRENL 152
L G+L D +E ++ NL
Sbjct: 136 LPGAL------DEKELIEKMNL 151
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
+++++G A GK+ +L + E V + TIG +T +++K + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSF----DHMARWL--DELRGHADKNIVIMLIGNKC 130
R + Y++ G + V D R+ + + R L DELR + V+++ NK
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR-----DAVLLVFANKQ 128
Query: 131 DL 132
DL
Sbjct: 129 DL 130
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
+++++G A GK+ +L + E V + TIG +T +++K + +WD GQ++
Sbjct: 18 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 72
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSF----DHMARWL--DELRGHADKNIVIMLIGNKC 130
R + Y++ G + V D R+ + + R L DELR + V+++ NK
Sbjct: 73 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR-----DAVLLVFANKQ 127
Query: 131 DL 132
DL
Sbjct: 128 DL 129
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
++ L+G GK+ + A +F+ D T+G F + ++ + T+K +WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 87
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADK----NIVIMLIGNKCD 131
R+R++ Y RG + + D ++ + +EL DK I ++++GNK D
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASK---NELHNLLDKPQLQGIPVLVLGNKRD 144
Query: 132 L-GSLRAVPTEDAQEFAQRENL 152
L G+L D +E ++ NL
Sbjct: 145 LPGAL------DEKELIEKMNL 160
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G A GK+ +L + E V + TIG +T +++K + +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSF----DHMARWL--DELRGHADKNIVIMLIGNK 129
+ R + Y++ G + V D R+ + + R L DELR + V+++ NK
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR-----DAVLLVFANK 275
Query: 130 CDL 132
DL
Sbjct: 276 QDL 278
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G A GK+ +L + E V + TIG +T +++K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKR----QSFDHMARWL--DELRGHADKNIVIMLIGNK 129
+ R + YY+ + V D R ++ + + + L DE+R N ++++ NK
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMR-----NAILLVFANK 127
Query: 130 CDL 132
DL
Sbjct: 128 HDL 130
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 18 VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY 77
+ ++G GKS L +F F + + + ++ ++DH+ V ++ DTA +
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTP 82
Query: 78 RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA---DKNIVIMLIGNKCDLGS 134
R Y A ++VY + RQSFD + +L+ L HA ++I +L+GNK D+
Sbjct: 83 RNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 135 LRAVPTEDAQEFAQRENLFFMETSA-LEATNVETAFLTVLTEIYR 178
R V + A R F E SA L+ +V+ F + E R
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G A GK+ +L + E V + TIG +T +++K + +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGLD 57
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSF----DHMARWL--DELRGHADKNIVIMLIGNK 129
+ R + Y++ G + V D R+ + + R L DELR + V+++ NK
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR-----DAVLLVFANK 112
Query: 130 CDL 132
DL
Sbjct: 113 QDL 115
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
+++++G GK+ +L +F N VD+ T+G F KTL +H+ K IWD GQ
Sbjct: 19 LRLLMLGLDNAGKTTILKKF--NGEDVDTISPTLG--FNIKTL--EHRGFKLNIWDVGGQ 72
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL- 132
+ R+ Y+ G + V D RQ R L L +++ NK DL
Sbjct: 73 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132
Query: 133 GSLRAVPTEDAQEF 146
G+L ++A E
Sbjct: 133 GALSCNAIQEALEL 146
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74
+++++G GK+ +L +F N VD+ T+G F KTL +H+ K IWD GQ
Sbjct: 19 LRLLMLGLDNAGKTTILKKF--NGEDVDTISPTLG--FNIKTL--EHRGFKLNIWDVGGQ 72
Query: 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL- 132
+ R+ Y+ G + V D RQ R L L +++ NK DL
Sbjct: 73 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132
Query: 133 GSLRAVPTEDAQEF 146
G+L ++A E
Sbjct: 133 GALSXNAIQEALEL 146
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G GK+ +L R E V +K TIG F +TLS +K +K +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLS--YKNLKLNVWDLGGQT 73
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKR 100
R YY + V D T +
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDK 98
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
KV+++G GK+ +L +F NE V + TIG + I K +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEV-VHTSPTIGSNVE----EIVVKNTHFLMWDIGGQES 72
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL 132
R+ + YY +LV D R+ L + H D + +++ NK D+
Sbjct: 73 LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDM 129
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
KV+++G GK+ +L +F+ NE V + TIG + ++ + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 77
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL 132
R+ + YY ++V D T R+ L ++ H D + +++ NK D+
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
KV+++G GK+ +L +F+ NE V + TIG + ++ + +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 78
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL 132
R+ + YY ++V D T R+ L ++ H D + +++ NK D+
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 135
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
KV+++G GK+ +L +F+ NE V + TIG + ++ + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 72
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSL 135
R+ + YY ++V D T R+ L ++ H D + +++ NK D+
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 136 RAVP 139
V
Sbjct: 133 MTVA 136
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
KV+++G GK+ +L +F+ NE V + TIG + ++ + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 72
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSL 135
R+ + YY ++V D T R+ L ++ H D + +++ NK D+
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 136 RAVP 139
V
Sbjct: 133 MTVA 136
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G GK+ +L +F + S T+G F KTL +H+ K IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTIS-PTLG--FNIKTL--EHRGFKLNIWDVGGQK 71
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDEL 113
R+ Y+ G + V D RQ R L L
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 109
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFS--VDSKATIGVEFQTKTLSIDHKTVK---AQIWDT 71
K+ ++G++ GK+ LL + + + S AT+G++ + + I K + +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 72 AGQERYRAVTSAYYRGAVGAMLVYDMTKRQS-FDHMARWLDELRGHADKNIVIMLIGNKC 130
AG+E + + + + VYD++K Q+ D WL ++ A + VI L+G
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 122
Query: 131 DL 132
D+
Sbjct: 123 DV 124
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 9/135 (6%)
Query: 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTKTLSIDHKTVKAQIWDTAG 73
+ +++++G GK+ +L +F N VD+ T+G F KTL +H+ K IWD G
Sbjct: 1 MLRLLMLGLDNAGKTTILKKF--NGEDVDTISPTLG--FNIKTL--EHRGFKLNIWDVGG 54
Query: 74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL 132
+ R+ Y+ G + V D RQ R L L +++ NK DL
Sbjct: 55 LKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 114
Query: 133 -GSLRAVPTEDAQEF 146
G+L ++A E
Sbjct: 115 PGALSCNAIQEALEL 129
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFS--VDSKATIGVEFQTKTLSIDHKTVK---AQIWDT 71
K+ ++G++ GK+ LL + + + S AT+G++ + + I K + +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 72 AGQERYRAVTSAYYRGAVGAMLVYDMTKRQS-FDHMARWLDELRGHADKNIVIMLIGNKC 130
AG+E + + + + VYD++K Q+ D WL ++ A + VI L+G
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 120
Query: 131 DL 132
D+
Sbjct: 121 DV 122
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 1 MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID 60
SNL+G+ +I +++G GK+ +L + E + + TIG + +
Sbjct: 9 FSNLFGNKEMRI------LMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVE----CVQ 57
Query: 61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR----QSFDHMARWLDE 112
+ + +WD GQ+R R++ YY G + V D R ++ + M R L+E
Sbjct: 58 YCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNE 113
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 27 GKSQLLARFARNEFSVDS-KATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYY 85
GK+ +L +F N VD+ T+G F KTL +H+ K IWD GQ+ R+ Y+
Sbjct: 30 GKTTILKKF--NGEDVDTISPTLG--FNIKTL--EHRGFKLNIWDVGGQKSLRSYWRNYF 83
Query: 86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL-GSLRAVPTEDA 143
G + V D RQ R L L +++ NK DL G+L ++A
Sbjct: 84 ESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEA 143
Query: 144 QEF 146
E
Sbjct: 144 LEL 146
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G GK+ +L R E V + TIG +T T +K +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVETVT----YKNLKFQVWDLGGQT 57
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKR 100
R YY + V D R
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDR 82
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
D +++L+G GK+ LL + A + S T F K S+ + K +WD
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIK--SVQSQGFKLNVWDIG 69
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLI-GNKCD 131
GQ + R +Y+ + V D R+ F+ + L EL + V +LI NK D
Sbjct: 70 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 129
Query: 132 LGSLRAVPTEDAQEFAQRENL 152
L L A P A E A+ NL
Sbjct: 130 L--LTAAP---ASEIAEGLNL 145
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 18 VVLIGDSAVGKSQLLARF-ARNEFSVDSKATIGV---EFQTKTLSIDHKTVKAQIWDTAG 73
V+ +G GK+ ++ + N S + TIG +F++ +LS ++D +G
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSF-------TVFDMSG 76
Query: 74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD---KNIVIMLIGNKC 130
Q RYR + YY+ + V D + R LD L H D + I I+ NK
Sbjct: 77 QGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136
Query: 131 DL 132
DL
Sbjct: 137 DL 138
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
D +++L+G GK+ LL + A + S T F K S+ + K +WD
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIK--SVQSQGFKLNVWDIG 68
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLI-GNKCD 131
GQ + R +Y+ + V D R+ F+ + L EL + V +LI NK D
Sbjct: 69 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128
Query: 132 LGSLRAVPTEDAQEFAQRENL 152
L L A P A E A+ NL
Sbjct: 129 L--LTAAP---ASEIAEGLNL 144
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
+++L+G GK+ LL + A + S T F K S+ + K +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIK--SVQSQGFKLNVWDIGGQRK 60
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLI-GNKCDLGSL 135
R +Y+ + V D R+ F+ + L EL + V +LI NK DL L
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL--L 118
Query: 136 RAVPTEDAQEFAQRENL 152
A P A E A+ NL
Sbjct: 119 TAAP---ASEIAEGLNL 132
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 13/178 (7%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
++ ++GD+ GKS L+ RF + V K E K + +D +T I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARW---LDELRGHADKNIVIMLIG--NKC 130
A + + A + V+ + SF ++R L LRG + + L+G ++
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 131 DLGSLRAVPTEDAQEF-AQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTA 187
S R V A+ A + + ET A NV+ F V ++ + ++ L A
Sbjct: 121 SASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 13/178 (7%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
++ ++GD+ GKS L+ RF + V K E K + +D +T I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARW---LDELRGHADKNIVIMLIG--NKC 130
A + + A + V+ + SF ++R L LRG + + L+G ++
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 131 DLGSLRAVPTEDAQEF-AQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTA 187
S R V A+ A + + ET A NV+ F V ++ + ++ L A
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75
+++++G GK+ +L R E V + TIG +T T +K +K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVETVT----YKNLKFQVWDLGGLT 59
Query: 76 RYRAVTSAYYRGAVGAMLVYDMTKR 100
R YY + V D R
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVDSCDR 84
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
+++++G GK+ +L R E V + TIG +T T +K +K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVETVT----YKNLKFQVWDLGGLTS 63
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKR 100
R YY + V D R
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDR 87
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76
+++L+G GK+ LL + A + S T F K S+ + K +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIK--SVQSQGFKLNVWDIGGLRK 60
Query: 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLI-GNKCDLGSL 135
R +Y+ + V D R+ F+ + L EL + V +LI NK DL L
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL--L 118
Query: 136 RAVPTEDAQEFAQRENL 152
A P A E A+ NL
Sbjct: 119 TAAP---ASEIAEGLNL 132
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKT------LSIDH--KTVKAQ 67
KV LIGD GK+ LL + F T G+ TK L D K
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 68 IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIG 127
WD GQE A + + ML+ D ++ S H WL + + K+ VI+++
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLD-SRTDSNKHY--WLRHIEKYGGKSPVIVVM- 157
Query: 128 NKCD 131
NK D
Sbjct: 158 NKID 161
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 90 GAMLVYDMTK--RQSFDHMARWLDELRGH---ADKNIVIMLIGNKCDLGSLRAVPTEDAQ 144
G +L D+++ ++FD +++ L K IV++L KCD G R + DA
Sbjct: 165 GFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVL--TKCDEGVERYI--RDAH 220
Query: 145 EFA-QRENLFFMETSALEATNVETAFLTVLTEI 176
FA ++NL +ETSA NV+ AF T++ I
Sbjct: 221 TFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 12/124 (9%)
Query: 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72
D +V+++G GK+ +L R + ++ +K + ++WD
Sbjct: 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTV-----GVNLETLQYKNISFEVWDLG 74
Query: 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN----IVIMLIGN 128
GQ R Y+ + V D T R D M EL D++ ++++ N
Sbjct: 75 GQTGVRPYWRCYFSDTDAVIYVVDSTDR---DRMGVAKHELYALLDEDELRKSLLLIFAN 131
Query: 129 KCDL 132
K DL
Sbjct: 132 KQDL 135
>pdb|1AVC|A Chain A, Bovine Annexin Vi (Calcium-Bound)
Length = 673
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 115 GHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173
GH + ++ + GN+ + G R EDAQ A E L +T++ + +++ET F+ +L
Sbjct: 495 GHFKRILISLATGNREEGGEDRERAREDAQVAA--EILEIADTTSGDKSSLETRFMMIL 551
>pdb|3KF8|A Chain A, Crystal Structure Of C. Tropicalis Stn1-Ten1 Complex
pdb|3KF8|C Chain C, Crystal Structure Of C. Tropicalis Stn1-Ten1 Complex
Length = 220
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 2 SNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI-D 60
NLYG YN D++ VVL+ + V + + + ++ K GVE L I D
Sbjct: 61 PNLYGIYNYIADHLRHVVLVNNYPVNQINIFGKIVYEQYK--EKEFNGVEESYVILVISD 118
Query: 61 HKTVKAQIWDTAGQERYRAV 80
+ ++I QE+++ V
Sbjct: 119 FIGIDSKIRVRLSQEQFKEV 138
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVD--SKATIGVEFQTKTLSIDHKTVKAQI 68
+ F ++ +G++ +GKS L+ +F + + GV+ Q+ T + V+ ++
Sbjct: 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKL 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,752,307
Number of Sequences: 62578
Number of extensions: 201468
Number of successful extensions: 1201
Number of sequences better than 100.0: 357
Number of HSP's better than 100.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 362
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)