Query 027382
Match_columns 224
No_of_seqs 151 out of 1829
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:07:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 2.9E-42 6.3E-47 247.7 22.5 180 8-187 2-182 (205)
2 KOG0078 GTP-binding protein SE 100.0 4.2E-40 9.2E-45 239.9 23.0 177 7-183 3-180 (207)
3 KOG0087 GTPase Rab11/YPT3, sma 100.0 5.9E-40 1.3E-44 238.1 21.0 184 7-190 6-189 (222)
4 KOG0092 GTPase Rab5/YPT51 and 100.0 2.7E-40 5.8E-45 236.7 18.9 198 13-222 3-200 (200)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 4.3E-40 9.3E-45 235.8 19.8 168 14-181 21-189 (221)
6 KOG0098 GTPase Rab2, small G p 100.0 2.3E-39 5E-44 230.2 20.9 179 12-190 3-181 (216)
7 KOG0080 GTPase Rab18, small G 100.0 1.6E-38 3.5E-43 220.6 19.0 202 11-223 7-209 (209)
8 PLN03110 Rab GTPase; Provision 100.0 5.8E-37 1.3E-41 234.5 26.8 208 11-222 8-215 (216)
9 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 9.6E-37 2.1E-41 231.1 23.6 168 16-183 1-174 (201)
10 cd04121 Rab40 Rab40 subfamily. 100.0 1.9E-36 4.1E-41 226.4 24.5 171 11-182 2-172 (189)
11 cd04120 Rab12 Rab12 subfamily. 100.0 3.3E-36 7.2E-41 227.2 25.1 165 16-180 1-166 (202)
12 KOG0079 GTP-binding protein H- 100.0 2.4E-37 5.3E-42 211.9 15.0 172 10-182 3-174 (198)
13 cd04111 Rab39 Rab39 subfamily. 100.0 2.4E-35 5.2E-40 224.7 25.8 208 15-222 2-211 (211)
14 KOG0086 GTPase Rab4, small G p 100.0 2.1E-36 4.4E-41 208.5 17.7 208 9-220 3-212 (214)
15 KOG0394 Ras-related GTPase [Ge 100.0 1.5E-36 3.2E-41 215.6 17.4 172 11-182 5-183 (210)
16 cd04110 Rab35 Rab35 subfamily. 100.0 6.1E-35 1.3E-39 220.8 25.1 171 12-183 3-173 (199)
17 PLN03108 Rab family protein; P 100.0 1.2E-34 2.5E-39 220.9 26.8 207 12-221 3-210 (210)
18 cd04126 Rab20 Rab20 subfamily. 100.0 2.9E-35 6.4E-40 224.4 23.0 187 16-221 1-220 (220)
19 KOG0095 GTPase Rab30, small G 100.0 6.2E-36 1.3E-40 205.4 15.5 177 9-185 1-177 (213)
20 cd04109 Rab28 Rab28 subfamily. 100.0 1.1E-34 2.3E-39 222.0 23.8 164 16-179 1-168 (215)
21 cd04125 RabA_like RabA-like su 100.0 2E-34 4.4E-39 216.2 24.7 168 16-183 1-168 (188)
22 KOG0093 GTPase Rab3, small G p 100.0 2.2E-35 4.7E-40 202.1 17.5 177 8-184 14-190 (193)
23 cd04122 Rab14 Rab14 subfamily. 100.0 1.5E-34 3.2E-39 212.8 23.3 164 15-178 2-165 (166)
24 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3.2E-34 7E-39 219.9 25.8 167 12-180 10-191 (232)
25 cd04144 Ras2 Ras2 subfamily. 100.0 1.1E-34 2.5E-39 217.9 22.6 166 17-183 1-169 (190)
26 KOG0091 GTPase Rab39, small G 100.0 3.5E-35 7.6E-40 204.5 18.0 178 12-189 5-185 (213)
27 cd04112 Rab26 Rab26 subfamily. 100.0 5E-34 1.1E-38 214.6 24.4 164 16-179 1-165 (191)
28 cd01867 Rab8_Rab10_Rab13_like 100.0 5.1E-34 1.1E-38 210.1 23.0 165 14-178 2-166 (167)
29 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.8E-34 6.1E-39 213.7 21.5 164 12-177 2-180 (182)
30 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.1E-33 2.5E-38 215.8 24.6 164 16-181 2-180 (222)
31 KOG0088 GTPase Rab21, small G 100.0 3.5E-35 7.5E-40 203.6 14.0 180 9-188 7-186 (218)
32 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 7.8E-34 1.7E-38 210.0 22.1 165 15-180 2-167 (172)
33 cd04133 Rop_like Rop subfamily 100.0 5.8E-34 1.3E-38 210.8 20.5 159 16-176 2-172 (176)
34 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2.1E-33 4.5E-38 206.6 23.2 163 15-177 2-164 (166)
35 cd04117 Rab15 Rab15 subfamily. 100.0 1.4E-33 2.9E-38 206.6 21.9 160 16-175 1-160 (161)
36 cd01865 Rab3 Rab3 subfamily. 100.0 2.3E-33 4.9E-38 206.3 23.1 162 16-177 2-163 (165)
37 cd04127 Rab27A Rab27a subfamil 100.0 2.1E-33 4.5E-38 209.3 23.0 167 13-179 2-179 (180)
38 PTZ00369 Ras-like protein; Pro 100.0 1.8E-33 3.8E-38 211.2 22.4 167 14-181 4-171 (189)
39 PF00071 Ras: Ras family; Int 100.0 1.9E-33 4.1E-38 205.9 21.4 161 17-177 1-161 (162)
40 cd04131 Rnd Rnd subfamily. Th 100.0 1.3E-33 2.8E-38 209.6 20.8 161 15-177 1-176 (178)
41 cd01868 Rab11_like Rab11-like. 100.0 3.8E-33 8.1E-38 205.0 22.7 163 14-176 2-164 (165)
42 cd04119 RJL RJL (RabJ-Like) su 100.0 3.3E-33 7.1E-38 205.5 22.2 162 16-177 1-167 (168)
43 cd01866 Rab2 Rab2 subfamily. 100.0 6.8E-33 1.5E-37 204.3 23.7 166 13-178 2-167 (168)
44 cd04132 Rho4_like Rho4-like su 100.0 4.2E-33 9E-38 208.9 22.4 166 16-183 1-173 (187)
45 cd01875 RhoG RhoG subfamily. 100.0 4.8E-33 1E-37 209.1 22.3 161 15-177 3-177 (191)
46 cd04118 Rab24 Rab24 subfamily. 100.0 1.1E-32 2.5E-37 207.5 24.4 164 16-180 1-169 (193)
47 cd04128 Spg1 Spg1p. Spg1p (se 100.0 8.1E-33 1.8E-37 206.2 21.5 162 16-178 1-167 (182)
48 cd01864 Rab19 Rab19 subfamily. 100.0 2.5E-32 5.4E-37 200.7 22.6 162 14-175 2-164 (165)
49 cd04113 Rab4 Rab4 subfamily. 100.0 2.3E-32 5.1E-37 200.0 21.7 160 16-175 1-160 (161)
50 cd04136 Rap_like Rap-like subf 100.0 1.6E-32 3.5E-37 201.1 20.7 160 16-176 2-162 (163)
51 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.6E-32 3.4E-37 203.5 20.5 159 15-175 1-173 (175)
52 PLN03071 GTP-binding nuclear p 100.0 2.6E-32 5.6E-37 209.1 21.9 164 13-179 11-174 (219)
53 cd04175 Rap1 Rap1 subgroup. T 100.0 2.2E-32 4.8E-37 200.8 20.7 160 16-176 2-162 (164)
54 smart00175 RAB Rab subfamily o 100.0 5.6E-32 1.2E-36 198.3 22.6 163 16-178 1-163 (164)
55 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 8.6E-32 1.9E-36 198.7 22.8 162 17-178 2-166 (170)
56 cd04106 Rab23_lke Rab23-like s 100.0 6.3E-32 1.4E-36 197.8 21.8 158 16-174 1-160 (162)
57 KOG0097 GTPase Rab14, small G 100.0 7.1E-32 1.5E-36 184.0 19.8 179 11-189 7-185 (215)
58 cd04116 Rab9 Rab9 subfamily. 100.0 1.2E-31 2.6E-36 197.9 22.6 163 12-175 2-169 (170)
59 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.3E-31 2.8E-36 197.9 22.0 162 15-176 2-168 (170)
60 cd01860 Rab5_related Rab5-rela 100.0 2.2E-31 4.8E-36 195.1 23.0 162 15-176 1-162 (163)
61 cd00877 Ran Ran (Ras-related n 100.0 1.2E-31 2.6E-36 197.2 21.3 160 16-178 1-160 (166)
62 cd01871 Rac1_like Rac1-like su 100.0 1.1E-31 2.3E-36 198.9 20.7 158 16-175 2-173 (174)
63 cd04124 RabL2 RabL2 subfamily. 100.0 1.7E-31 3.8E-36 195.5 21.6 160 16-179 1-160 (161)
64 cd01861 Rab6 Rab6 subfamily. 100.0 2E-31 4.3E-36 195.0 21.9 160 16-175 1-160 (161)
65 smart00173 RAS Ras subfamily o 100.0 1.3E-31 2.8E-36 196.5 21.0 161 16-177 1-162 (164)
66 cd04176 Rap2 Rap2 subgroup. T 100.0 1.2E-31 2.6E-36 196.6 20.6 161 15-176 1-162 (163)
67 cd04140 ARHI_like ARHI subfami 100.0 1.4E-31 2.9E-36 196.8 20.9 158 16-174 2-162 (165)
68 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.8E-31 6E-36 194.7 21.5 161 15-176 2-163 (164)
69 PLN03118 Rab family protein; P 100.0 1.1E-30 2.3E-35 199.4 25.4 168 11-179 10-179 (211)
70 cd04138 H_N_K_Ras_like H-Ras/N 100.0 3.8E-31 8.3E-36 193.4 21.5 159 16-176 2-161 (162)
71 KOG0081 GTPase Rab27, small G 100.0 2.7E-33 5.8E-38 194.3 9.3 179 11-189 5-193 (219)
72 cd04134 Rho3 Rho3 subfamily. 100.0 2.6E-31 5.5E-36 199.5 20.5 159 17-177 2-174 (189)
73 cd04123 Rab21 Rab21 subfamily. 100.0 1.1E-30 2.4E-35 191.0 22.7 161 16-176 1-161 (162)
74 cd04142 RRP22 RRP22 subfamily. 100.0 4.7E-31 1E-35 199.0 21.0 164 16-179 1-176 (198)
75 smart00176 RAN Ran (Ras-relate 100.0 6.5E-31 1.4E-35 198.0 21.3 156 21-179 1-156 (200)
76 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.3E-30 2.7E-35 191.3 21.9 160 16-176 1-163 (164)
77 cd01892 Miro2 Miro2 subfamily. 100.0 5.7E-31 1.2E-35 194.2 19.3 163 13-177 2-166 (169)
78 cd01863 Rab18 Rab18 subfamily. 100.0 2.3E-30 5.1E-35 189.3 21.8 159 16-175 1-160 (161)
79 KOG0083 GTPase Rab26/Rab37, sm 100.0 4.8E-33 1E-37 187.8 6.8 169 19-187 1-170 (192)
80 smart00174 RHO Rho (Ras homolo 100.0 8.4E-31 1.8E-35 194.1 19.5 158 18-177 1-172 (174)
81 cd04114 Rab30 Rab30 subfamily. 100.0 5E-30 1.1E-34 189.0 23.5 165 12-176 4-168 (169)
82 cd01862 Rab7 Rab7 subfamily. 100.0 3.6E-30 7.8E-35 190.2 22.8 164 16-179 1-169 (172)
83 cd01873 RhoBTB RhoBTB subfamil 100.0 1.3E-30 2.8E-35 196.0 19.8 157 15-174 2-193 (195)
84 cd04143 Rhes_like Rhes_like su 100.0 2.7E-30 5.9E-35 200.6 21.5 160 16-176 1-170 (247)
85 cd04130 Wrch_1 Wrch-1 subfamil 100.0 3E-30 6.6E-35 191.1 20.1 157 16-174 1-171 (173)
86 cd00154 Rab Rab family. Rab G 100.0 6E-30 1.3E-34 186.0 21.3 158 16-173 1-158 (159)
87 cd04146 RERG_RasL11_like RERG/ 100.0 1.7E-30 3.8E-35 190.9 18.6 160 17-177 1-164 (165)
88 cd04148 RGK RGK subfamily. Th 100.0 5.2E-30 1.1E-34 196.6 21.8 163 16-180 1-166 (221)
89 cd04177 RSR1 RSR1 subgroup. R 100.0 6.1E-30 1.3E-34 188.5 21.4 161 16-177 2-164 (168)
90 cd04103 Centaurin_gamma Centau 100.0 3.8E-30 8.2E-35 187.6 19.3 153 16-175 1-157 (158)
91 cd04135 Tc10 TC10 subfamily. 100.0 9.6E-30 2.1E-34 188.4 19.8 159 16-176 1-173 (174)
92 cd04139 RalA_RalB RalA/RalB su 100.0 3.9E-29 8.4E-34 183.2 21.5 161 16-177 1-162 (164)
93 cd00876 Ras Ras family. The R 100.0 5.2E-29 1.1E-33 181.7 20.6 158 17-175 1-159 (160)
94 PLN00223 ADP-ribosylation fact 100.0 3.9E-29 8.4E-34 186.2 18.7 159 13-178 15-179 (181)
95 smart00177 ARF ARF-like small 100.0 5.6E-29 1.2E-33 184.6 19.2 167 1-176 1-173 (175)
96 cd04137 RheB Rheb (Ras Homolog 100.0 2.4E-28 5.2E-33 181.9 22.6 164 16-180 2-166 (180)
97 cd04149 Arf6 Arf6 subfamily. 100.0 4.2E-29 9E-34 184.0 18.1 154 14-174 8-167 (168)
98 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.3E-28 2.8E-33 183.9 20.5 166 15-183 3-176 (183)
99 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.1E-29 2.4E-34 186.4 13.9 153 17-174 1-163 (164)
100 PTZ00133 ADP-ribosylation fact 100.0 6.1E-29 1.3E-33 185.4 18.0 160 14-180 16-181 (182)
101 KOG0395 Ras-related GTPase [Ge 100.0 9.8E-29 2.1E-33 184.9 19.1 164 14-178 2-166 (196)
102 cd04158 ARD1 ARD1 subfamily. 100.0 1E-28 2.3E-33 182.1 18.0 155 17-178 1-162 (169)
103 cd04147 Ras_dva Ras-dva subfam 100.0 3.1E-28 6.8E-33 184.0 20.6 160 17-177 1-163 (198)
104 cd01870 RhoA_like RhoA-like su 100.0 4.6E-28 1E-32 179.6 20.9 159 16-176 2-174 (175)
105 cd04150 Arf1_5_like Arf1-Arf5- 100.0 2.9E-28 6.4E-33 178.0 18.5 152 16-174 1-158 (159)
106 cd00157 Rho Rho (Ras homology) 100.0 8.2E-28 1.8E-32 177.4 19.7 157 16-174 1-170 (171)
107 cd04129 Rho2 Rho2 subfamily. 100.0 1.1E-27 2.4E-32 179.5 20.4 160 16-177 2-173 (187)
108 cd04154 Arl2 Arl2 subfamily. 100.0 5.3E-28 1.1E-32 179.1 18.3 157 11-174 10-172 (173)
109 KOG4252 GTP-binding protein [S 100.0 5.2E-30 1.1E-34 181.4 6.4 178 9-187 14-191 (246)
110 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.5E-27 3.3E-32 179.7 20.1 147 16-162 1-175 (202)
111 PTZ00132 GTP-binding nuclear p 100.0 4.4E-27 9.4E-32 180.0 22.3 165 11-178 5-169 (215)
112 cd01893 Miro1 Miro1 subfamily. 100.0 2.1E-27 4.6E-32 174.7 19.2 159 16-177 1-164 (166)
113 cd04157 Arl6 Arl6 subfamily. 100.0 3.2E-27 7E-32 172.7 17.0 152 17-174 1-161 (162)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 4.3E-27 9.3E-32 174.3 17.1 153 15-174 15-173 (174)
115 cd04161 Arl2l1_Arl13_like Arl2 100.0 2.6E-27 5.6E-32 174.4 14.8 151 17-174 1-166 (167)
116 PF00025 Arf: ADP-ribosylation 100.0 9.4E-27 2E-31 172.4 17.4 158 12-176 11-175 (175)
117 smart00178 SAR Sar1p-like memb 100.0 6.9E-27 1.5E-31 174.7 16.4 164 4-175 7-183 (184)
118 cd04160 Arfrp1 Arfrp1 subfamil 100.0 1.5E-26 3.2E-31 170.2 17.4 152 17-174 1-166 (167)
119 KOG0393 Ras-related small GTPa 100.0 1.4E-27 2.9E-32 175.2 11.3 166 13-180 2-182 (198)
120 cd00879 Sar1 Sar1 subfamily. 99.9 2.6E-26 5.6E-31 172.4 18.4 157 12-175 16-189 (190)
121 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.7E-26 3.6E-31 168.7 16.5 152 17-174 1-159 (160)
122 PTZ00099 rab6; Provisional 99.9 1E-25 2.2E-30 166.8 20.4 142 38-179 3-144 (176)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2.2E-26 4.7E-31 167.8 15.8 151 17-174 1-157 (158)
124 cd04151 Arl1 Arl1 subfamily. 99.9 5E-26 1.1E-30 166.0 17.4 151 17-174 1-157 (158)
125 KOG0073 GTP-binding ADP-ribosy 99.9 1.7E-25 3.7E-30 156.3 17.8 164 9-179 10-180 (185)
126 PLN00023 GTP-binding protein; 99.9 1.2E-25 2.5E-30 177.5 18.5 142 11-152 17-189 (334)
127 cd01890 LepA LepA subfamily. 99.9 6.1E-25 1.3E-29 163.3 17.5 154 17-176 2-176 (179)
128 cd04159 Arl10_like Arl10-like 99.9 5.8E-25 1.3E-29 159.8 16.2 151 18-174 2-158 (159)
129 cd01897 NOG NOG1 is a nucleola 99.9 2E-24 4.3E-29 159.0 16.3 155 17-176 2-167 (168)
130 TIGR00231 small_GTP small GTP- 99.9 9.4E-24 2E-28 153.0 18.7 158 15-173 1-160 (161)
131 cd04155 Arl3 Arl3 subfamily. 99.9 8.2E-24 1.8E-28 156.5 18.4 155 13-174 12-172 (173)
132 COG1100 GTPase SAR1 and relate 99.9 3.2E-23 6.9E-28 159.0 20.9 170 15-184 5-192 (219)
133 cd01878 HflX HflX subfamily. 99.9 4.3E-24 9.3E-29 162.2 15.8 157 12-175 38-203 (204)
134 cd01898 Obg Obg subfamily. Th 99.9 4.8E-24 1E-28 157.2 15.4 157 17-175 2-169 (170)
135 PRK12299 obgE GTPase CgtA; Rev 99.9 1.5E-23 3.2E-28 169.1 18.7 162 16-178 159-329 (335)
136 cd04171 SelB SelB subfamily. 99.9 9.8E-24 2.1E-28 154.4 16.2 151 16-173 1-162 (164)
137 TIGR02528 EutP ethanolamine ut 99.9 3.8E-24 8.3E-29 153.3 13.5 134 17-173 2-141 (142)
138 KOG0070 GTP-binding ADP-ribosy 99.9 5.4E-24 1.2E-28 152.5 13.9 160 12-178 14-179 (181)
139 cd00882 Ras_like_GTPase Ras-li 99.9 2E-22 4.3E-27 144.7 18.4 153 20-173 1-156 (157)
140 cd01891 TypA_BipA TypA (tyrosi 99.9 2.7E-23 5.7E-28 156.6 14.2 149 16-168 3-173 (194)
141 PRK04213 GTP-binding protein; 99.9 1.5E-23 3.3E-28 158.8 12.0 153 12-177 6-192 (201)
142 cd01879 FeoB Ferrous iron tran 99.9 1.1E-22 2.5E-27 147.9 16.1 147 20-175 1-155 (158)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.2E-22 2.6E-27 149.3 16.3 156 17-176 2-165 (168)
144 KOG0071 GTP-binding ADP-ribosy 99.9 1.4E-22 3.1E-27 138.1 14.8 156 14-176 16-177 (180)
145 KOG3883 Ras family small GTPas 99.9 6.2E-22 1.3E-26 137.0 16.3 176 11-187 5-185 (198)
146 TIGR03156 GTP_HflX GTP-binding 99.9 4.7E-22 1E-26 161.6 18.1 155 13-175 187-350 (351)
147 TIGR02729 Obg_CgtA Obg family 99.9 4.8E-22 1E-26 160.2 17.9 159 16-176 158-328 (329)
148 PF02421 FeoB_N: Ferrous iron 99.9 1E-22 2.2E-27 145.9 12.3 148 16-172 1-156 (156)
149 TIGR00436 era GTP-binding prot 99.9 2.7E-22 5.9E-27 158.4 15.9 153 17-176 2-163 (270)
150 PF08477 Miro: Miro-like prote 99.9 2.1E-22 4.6E-27 139.9 13.1 114 17-131 1-119 (119)
151 KOG0075 GTP-binding ADP-ribosy 99.9 9E-23 2E-27 140.2 10.9 154 14-176 19-181 (186)
152 TIGR00450 mnmE_trmE_thdF tRNA 99.9 9.4E-22 2E-26 164.1 17.2 156 12-181 200-364 (442)
153 TIGR01393 lepA GTP-binding pro 99.9 1.6E-21 3.5E-26 168.1 18.5 156 15-176 3-179 (595)
154 PRK15494 era GTPase Era; Provi 99.9 1.2E-21 2.5E-26 159.0 16.7 155 13-176 50-215 (339)
155 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.1E-21 2.5E-26 142.3 15.0 146 16-176 2-156 (157)
156 cd01881 Obg_like The Obg-like 99.9 3.4E-22 7.4E-27 148.0 12.2 155 20-175 1-175 (176)
157 cd00881 GTP_translation_factor 99.9 1.5E-21 3.3E-26 146.1 15.7 156 17-176 1-186 (189)
158 cd01889 SelB_euk SelB subfamil 99.9 8.6E-22 1.9E-26 148.2 14.1 158 16-177 1-186 (192)
159 PRK15467 ethanolamine utilizat 99.9 1.5E-21 3.2E-26 142.2 14.7 141 17-179 3-149 (158)
160 PRK03003 GTP-binding protein D 99.9 9.6E-22 2.1E-26 166.3 15.4 155 14-178 37-200 (472)
161 cd01894 EngA1 EngA1 subfamily. 99.9 1.1E-21 2.4E-26 142.5 12.9 146 19-175 1-156 (157)
162 PRK03003 GTP-binding protein D 99.9 1.9E-21 4.1E-26 164.5 15.7 161 13-179 209-384 (472)
163 cd01888 eIF2_gamma eIF2-gamma 99.9 2.1E-21 4.5E-26 147.2 14.4 159 16-176 1-198 (203)
164 PRK12297 obgE GTPase CgtA; Rev 99.9 1.4E-20 3.1E-25 155.4 19.2 157 17-179 160-329 (424)
165 TIGR00487 IF-2 translation ini 99.9 1.6E-20 3.6E-25 161.1 19.7 154 13-174 85-247 (587)
166 TIGR03594 GTPase_EngA ribosome 99.9 8E-21 1.7E-25 159.6 17.4 161 13-179 170-346 (429)
167 PRK00454 engB GTP-binding prot 99.9 1.9E-20 4E-25 141.2 17.1 159 11-176 20-193 (196)
168 TIGR03598 GTPase_YsxC ribosome 99.9 7.3E-21 1.6E-25 141.5 14.7 151 9-166 12-179 (179)
169 PRK05291 trmE tRNA modificatio 99.9 3.7E-21 8E-26 161.4 14.3 149 14-178 214-371 (449)
170 cd04163 Era Era subfamily. Er 99.9 1.9E-20 4.1E-25 136.9 16.2 156 15-175 3-167 (168)
171 cd01895 EngA2 EngA2 subfamily. 99.9 2.1E-20 4.6E-25 137.7 16.4 154 15-174 2-172 (174)
172 KOG1673 Ras GTPases [General f 99.9 5.7E-21 1.2E-25 132.6 11.8 166 13-179 18-188 (205)
173 PRK11058 GTPase HflX; Provisio 99.9 2E-20 4.3E-25 155.4 17.3 159 15-179 197-364 (426)
174 PRK12296 obgE GTPase CgtA; Rev 99.9 1.7E-20 3.8E-25 156.8 16.9 164 14-180 158-343 (500)
175 CHL00189 infB translation init 99.9 4.5E-20 9.7E-25 160.8 19.0 157 12-175 241-408 (742)
176 TIGR00475 selB selenocysteine- 99.9 3.7E-20 8E-25 159.6 17.6 157 16-178 1-167 (581)
177 PRK00089 era GTPase Era; Revie 99.9 3.6E-20 7.8E-25 148.1 16.3 157 15-176 5-170 (292)
178 PRK05433 GTP-binding protein L 99.9 5.9E-20 1.3E-24 158.6 18.4 160 12-177 4-184 (600)
179 PF00009 GTP_EFTU: Elongation 99.9 6.7E-21 1.4E-25 142.8 10.8 159 14-176 2-186 (188)
180 PRK05306 infB translation init 99.8 1.2E-19 2.7E-24 159.4 20.0 155 12-175 287-450 (787)
181 PRK12298 obgE GTPase CgtA; Rev 99.8 8.7E-20 1.9E-24 150.0 18.0 160 17-178 161-334 (390)
182 PRK00093 GTP-binding protein D 99.8 5E-20 1.1E-24 155.0 14.3 146 16-174 2-159 (435)
183 COG1159 Era GTPase [General fu 99.8 9.4E-20 2E-24 140.5 14.2 158 14-177 5-172 (298)
184 COG2229 Predicted GTPase [Gene 99.8 4.4E-19 9.4E-24 127.2 16.6 157 11-175 6-176 (187)
185 PRK00093 GTP-binding protein D 99.8 1.5E-19 3.3E-24 152.1 16.7 159 13-178 171-345 (435)
186 TIGR03594 GTPase_EngA ribosome 99.8 1.2E-19 2.7E-24 152.4 16.2 150 17-176 1-159 (429)
187 KOG0076 GTP-binding ADP-ribosy 99.8 3.2E-20 6.8E-25 131.3 9.9 160 14-179 16-189 (197)
188 TIGR00437 feoB ferrous iron tr 99.8 1.3E-19 2.8E-24 156.4 15.5 145 22-175 1-153 (591)
189 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 2.4E-20 5.2E-25 133.7 8.6 161 14-177 9-169 (216)
190 KOG4423 GTP-binding protein-li 99.8 2.6E-22 5.7E-27 143.3 -2.2 170 10-179 20-196 (229)
191 PRK09554 feoB ferrous iron tra 99.8 7E-19 1.5E-23 155.2 18.4 153 15-176 3-167 (772)
192 cd00880 Era_like Era (E. coli 99.8 3.5E-19 7.6E-24 129.0 13.4 151 20-175 1-162 (163)
193 PRK09518 bifunctional cytidyla 99.8 6.3E-19 1.4E-23 155.8 17.5 157 14-178 449-622 (712)
194 KOG0074 GTP-binding ADP-ribosy 99.8 1.8E-19 4E-24 123.2 10.9 155 10-173 12-175 (185)
195 PRK09518 bifunctional cytidyla 99.8 6.9E-19 1.5E-23 155.5 17.5 155 14-178 274-437 (712)
196 TIGR01394 TypA_BipA GTP-bindin 99.8 4.2E-19 9.2E-24 152.8 15.7 156 17-176 3-190 (594)
197 COG1160 Predicted GTPases [Gen 99.8 1.7E-19 3.7E-24 146.4 12.3 150 16-176 4-164 (444)
198 cd04105 SR_beta Signal recogni 99.8 9.1E-19 2E-23 132.6 15.1 117 17-134 2-123 (203)
199 cd01896 DRG The developmentall 99.8 4E-18 8.6E-23 131.6 18.6 151 17-176 2-225 (233)
200 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.6E-19 7.8E-24 135.4 12.5 149 17-168 1-185 (208)
201 PRK10218 GTP-binding protein; 99.8 1.8E-18 3.8E-23 148.9 18.1 159 14-176 4-194 (607)
202 PRK12317 elongation factor 1-a 99.8 3.2E-19 7E-24 149.4 13.1 157 12-170 3-198 (425)
203 TIGR00483 EF-1_alpha translati 99.8 5.2E-19 1.1E-23 148.2 14.1 157 12-170 4-200 (426)
204 cd01884 EF_Tu EF-Tu subfamily. 99.8 2.5E-18 5.4E-23 129.1 16.4 148 15-166 2-172 (195)
205 cd01876 YihA_EngB The YihA (En 99.8 2.8E-18 6E-23 125.7 15.0 150 17-175 1-169 (170)
206 PRK04000 translation initiatio 99.8 1.8E-18 4E-23 143.7 15.1 165 10-176 4-200 (411)
207 TIGR00491 aIF-2 translation in 99.8 5.3E-18 1.1E-22 145.6 18.2 154 17-177 6-216 (590)
208 COG1160 Predicted GTPases [Gen 99.8 2.8E-18 6.1E-23 139.4 15.5 168 14-187 177-360 (444)
209 TIGR03680 eif2g_arch translati 99.8 1.7E-18 3.7E-23 143.9 14.5 162 13-176 2-195 (406)
210 PF10662 PduV-EutP: Ethanolami 99.8 4E-18 8.6E-23 119.6 13.4 134 17-173 3-142 (143)
211 COG0486 ThdF Predicted GTPase 99.8 3.2E-18 6.9E-23 139.4 14.6 157 12-179 214-378 (454)
212 cd04168 TetM_like Tet(M)-like 99.8 1.2E-17 2.5E-22 129.2 16.4 113 17-133 1-129 (237)
213 cd01883 EF1_alpha Eukaryotic e 99.8 1E-18 2.3E-23 133.9 10.4 148 17-166 1-194 (219)
214 KOG0072 GTP-binding ADP-ribosy 99.8 1.9E-19 4.2E-24 123.4 5.1 167 4-178 8-180 (182)
215 PRK10512 selenocysteinyl-tRNA- 99.8 1.6E-17 3.5E-22 143.8 17.5 154 17-176 2-165 (614)
216 PRK04004 translation initiatio 99.8 4.1E-17 8.9E-22 140.6 19.0 156 14-176 5-217 (586)
217 PRK12735 elongation factor Tu; 99.8 2E-17 4.4E-22 137.1 16.2 154 7-164 4-180 (396)
218 PRK12736 elongation factor Tu; 99.8 2.1E-17 4.5E-22 137.0 16.2 149 11-163 8-179 (394)
219 cd04167 Snu114p Snu114p subfam 99.8 1E-17 2.2E-22 128.0 12.6 113 17-133 2-136 (213)
220 CHL00071 tufA elongation facto 99.8 4.6E-17 9.9E-22 135.6 16.1 155 7-165 4-181 (409)
221 KOG1489 Predicted GTP-binding 99.8 2.5E-17 5.4E-22 127.6 13.0 154 16-174 197-364 (366)
222 TIGR00485 EF-Tu translation el 99.7 5.5E-17 1.2E-21 134.6 15.4 150 10-163 7-179 (394)
223 COG1084 Predicted GTPase [Gene 99.7 6.3E-17 1.4E-21 126.2 14.5 165 6-176 159-335 (346)
224 cd04169 RF3 RF3 subfamily. Pe 99.7 1E-16 2.2E-21 126.0 15.9 115 16-134 3-137 (267)
225 COG0370 FeoB Fe2+ transport sy 99.7 4.5E-17 9.8E-22 138.1 14.3 153 15-176 3-163 (653)
226 KOG1145 Mitochondrial translat 99.7 1.9E-16 4.1E-21 130.5 17.3 196 14-220 152-359 (683)
227 COG0532 InfB Translation initi 99.7 4.5E-16 9.8E-21 128.6 17.9 178 15-202 5-195 (509)
228 cd04165 GTPBP1_like GTPBP1-lik 99.7 2.7E-16 5.9E-21 120.5 15.2 153 17-173 1-219 (224)
229 KOG1707 Predicted Ras related/ 99.7 3.4E-17 7.4E-22 135.7 10.7 164 11-176 5-174 (625)
230 KOG0462 Elongation factor-type 99.7 8.3E-17 1.8E-21 132.5 12.7 162 11-176 56-234 (650)
231 cd01886 EF-G Elongation factor 99.7 9E-17 2E-21 126.4 12.4 114 17-134 1-130 (270)
232 COG2262 HflX GTPases [General 99.7 5.2E-16 1.1E-20 124.6 16.3 163 12-180 189-359 (411)
233 PLN00043 elongation factor 1-a 99.7 3.2E-16 7E-21 131.3 15.4 152 12-167 4-203 (447)
234 PLN03126 Elongation factor Tu; 99.7 3.1E-16 6.7E-21 132.0 15.1 150 11-164 77-249 (478)
235 KOG1423 Ras-like GTPase ERA [C 99.7 7.6E-16 1.6E-20 118.9 15.8 159 12-176 69-270 (379)
236 COG0218 Predicted GTPase [Gene 99.7 1.1E-15 2.5E-20 112.1 15.9 159 11-177 20-197 (200)
237 PRK05124 cysN sulfate adenylyl 99.7 2.5E-16 5.4E-21 133.0 14.2 154 12-168 24-216 (474)
238 PRK00049 elongation factor Tu; 99.7 7.4E-16 1.6E-20 127.8 16.6 152 9-164 6-180 (396)
239 cd01885 EF2 EF2 (for archaea a 99.7 4.6E-16 1E-20 118.8 13.7 113 17-133 2-138 (222)
240 cd01850 CDC_Septin CDC/Septin. 99.7 6.7E-16 1.4E-20 121.9 14.3 142 14-160 3-185 (276)
241 TIGR02034 CysN sulfate adenyly 99.7 4.7E-16 1E-20 129.4 14.1 149 16-167 1-187 (406)
242 PTZ00141 elongation factor 1- 99.7 6.8E-16 1.5E-20 129.5 15.1 153 12-167 4-203 (446)
243 cd04170 EF-G_bact Elongation f 99.7 8.8E-16 1.9E-20 121.3 14.9 143 17-165 1-161 (268)
244 cd04104 p47_IIGP_like p47 (47- 99.7 1.6E-15 3.5E-20 114.4 15.4 158 15-180 1-187 (197)
245 KOG0077 Vesicle coat complex C 99.7 2.3E-16 4.9E-21 111.0 9.4 156 12-174 17-190 (193)
246 COG1163 DRG Predicted GTPase [ 99.7 1.6E-15 3.5E-20 118.0 14.5 157 11-176 59-288 (365)
247 COG3596 Predicted GTPase [Gene 99.7 5.2E-16 1.1E-20 118.5 10.8 163 12-177 36-222 (296)
248 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 3.3E-16 7.1E-21 119.7 9.8 162 17-181 1-180 (232)
249 PRK05506 bifunctional sulfate 99.7 1.7E-15 3.6E-20 132.7 15.2 154 11-167 20-211 (632)
250 PLN03127 Elongation factor Tu; 99.7 3.4E-15 7.3E-20 125.1 15.6 150 11-164 57-232 (447)
251 PRK13351 elongation factor G; 99.7 2.7E-15 5.9E-20 132.6 15.9 120 11-134 4-139 (687)
252 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 5.7E-15 1.2E-19 111.4 14.9 160 16-177 1-184 (196)
253 PF01926 MMR_HSR1: 50S ribosom 99.7 2.4E-15 5.3E-20 103.8 11.8 106 17-129 1-116 (116)
254 PRK00741 prfC peptide chain re 99.7 3.2E-15 6.9E-20 127.4 14.7 122 9-134 4-145 (526)
255 TIGR00503 prfC peptide chain r 99.6 3.8E-15 8.2E-20 127.0 14.4 123 8-134 4-146 (527)
256 COG0481 LepA Membrane GTPase L 99.6 7.6E-15 1.6E-19 119.4 14.0 159 11-176 5-185 (603)
257 PTZ00327 eukaryotic translatio 99.6 5.6E-15 1.2E-19 123.7 13.7 163 12-176 31-232 (460)
258 PRK12739 elongation factor G; 99.6 2.2E-14 4.7E-19 126.8 16.9 120 11-134 4-139 (691)
259 KOG1191 Mitochondrial GTPase [ 99.6 4.3E-15 9.4E-20 121.3 11.0 169 12-182 265-455 (531)
260 COG5256 TEF1 Translation elong 99.6 6.5E-15 1.4E-19 118.3 11.8 156 11-168 3-202 (428)
261 PF09439 SRPRB: Signal recogni 99.6 1.6E-15 3.5E-20 111.1 7.5 115 16-134 4-126 (181)
262 TIGR00484 EF-G translation elo 99.6 1.6E-14 3.5E-19 127.6 15.1 120 11-134 6-141 (689)
263 COG0536 Obg Predicted GTPase [ 99.6 1.5E-14 3.2E-19 113.6 12.9 159 17-180 161-336 (369)
264 cd01899 Ygr210 Ygr210 subfamil 99.6 7.5E-14 1.6E-18 112.0 16.4 82 18-99 1-111 (318)
265 PRK09866 hypothetical protein; 99.6 2.3E-13 5E-18 115.6 18.7 109 64-174 230-350 (741)
266 PRK00007 elongation factor G; 99.6 9.1E-14 2E-18 122.8 15.5 146 11-162 6-171 (693)
267 TIGR00490 aEF-2 translation el 99.6 8.3E-15 1.8E-19 129.7 9.0 129 1-133 5-151 (720)
268 KOG1707 Predicted Ras related/ 99.5 2.2E-13 4.7E-18 113.4 14.2 163 9-176 419-582 (625)
269 PRK12740 elongation factor G; 99.5 2.6E-13 5.6E-18 119.9 15.3 109 21-133 1-125 (668)
270 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2.5E-13 5.4E-18 107.3 13.0 129 4-134 27-167 (313)
271 cd00066 G-alpha G protein alph 99.5 3.6E-13 7.7E-18 108.6 14.0 121 60-180 157-314 (317)
272 cd01853 Toc34_like Toc34-like 99.5 3.4E-13 7.4E-18 104.8 13.3 127 7-134 23-163 (249)
273 KOG0090 Signal recognition par 99.5 3.3E-13 7.2E-18 99.2 12.2 114 16-134 39-159 (238)
274 COG4917 EutP Ethanolamine util 99.5 1.3E-13 2.8E-18 92.8 9.1 136 17-174 3-143 (148)
275 COG1217 TypA Predicted membran 99.5 3.5E-13 7.7E-18 109.6 12.4 159 14-176 4-194 (603)
276 PRK09602 translation-associate 99.5 1.3E-12 2.8E-17 107.9 16.1 83 16-98 2-113 (396)
277 KOG3905 Dynein light intermedi 99.5 1.5E-12 3.2E-17 101.7 14.7 164 13-179 50-292 (473)
278 PLN00116 translation elongatio 99.5 1.9E-13 4.1E-18 122.9 10.8 126 4-133 8-163 (843)
279 PRK07560 elongation factor EF- 99.5 4.3E-13 9.4E-18 119.2 12.7 128 2-133 7-152 (731)
280 KOG1490 GTP-binding protein CR 99.5 3.7E-13 8E-18 110.3 11.1 165 12-179 165-343 (620)
281 smart00275 G_alpha G protein a 99.5 2E-12 4.4E-17 105.0 15.0 121 61-181 181-338 (342)
282 COG2895 CysN GTPases - Sulfate 99.5 9E-13 2E-17 103.9 12.1 152 12-166 3-192 (431)
283 PF04548 AIG1: AIG1 family; I 99.5 7.8E-13 1.7E-17 100.9 11.4 158 16-176 1-185 (212)
284 PTZ00258 GTP-binding protein; 99.4 3.7E-12 8E-17 104.3 14.5 92 7-98 13-126 (390)
285 PRK14845 translation initiatio 99.4 9.7E-12 2.1E-16 112.5 17.6 142 27-175 473-671 (1049)
286 PTZ00416 elongation factor 2; 99.4 6.8E-13 1.5E-17 119.2 10.2 125 5-133 9-157 (836)
287 TIGR00101 ureG urease accessor 99.4 2.9E-12 6.3E-17 96.5 11.3 102 64-176 92-195 (199)
288 COG5257 GCD11 Translation init 99.4 9.3E-13 2E-17 102.6 8.6 162 13-176 8-201 (415)
289 TIGR02836 spore_IV_A stage IV 99.4 7.5E-12 1.6E-16 101.6 13.5 153 3-160 5-218 (492)
290 PF05783 DLIC: Dynein light in 99.4 1.6E-11 3.4E-16 103.0 14.7 164 13-179 23-266 (472)
291 smart00010 small_GTPase Small 99.4 1.1E-11 2.4E-16 86.2 11.0 114 16-166 1-115 (124)
292 TIGR00157 ribosome small subun 99.4 2.6E-12 5.6E-17 99.9 8.4 96 75-174 24-120 (245)
293 COG0480 FusA Translation elong 99.4 1.4E-11 3E-16 107.5 13.8 119 12-134 7-142 (697)
294 PRK13768 GTPase; Provisional 99.4 8E-12 1.7E-16 97.7 10.9 109 65-176 98-246 (253)
295 TIGR00073 hypB hydrogenase acc 99.4 1.1E-11 2.4E-16 94.2 11.0 152 13-175 20-205 (207)
296 KOG0082 G-protein alpha subuni 99.3 2.4E-11 5.2E-16 97.3 13.0 131 52-182 183-349 (354)
297 COG0050 TufB GTPases - transla 99.3 2.4E-11 5.3E-16 93.8 12.4 175 8-187 5-203 (394)
298 PRK09601 GTP-binding protein Y 99.3 1.1E-10 2.5E-15 94.6 16.4 83 16-98 3-107 (364)
299 COG4108 PrfC Peptide chain rel 99.3 1.2E-11 2.7E-16 100.0 10.4 138 10-153 7-164 (528)
300 KOG0461 Selenocysteine-specifi 99.3 1.4E-10 3E-15 91.5 15.8 166 11-182 3-194 (522)
301 cd01882 BMS1 Bms1. Bms1 is an 99.3 5.3E-11 1.2E-15 91.5 13.4 141 12-164 36-183 (225)
302 PRK09435 membrane ATPase/prote 99.3 3.2E-11 6.9E-16 97.0 12.3 106 63-179 148-262 (332)
303 KOG0458 Elongation factor 1 al 99.3 6.5E-12 1.4E-16 104.8 8.4 155 11-168 173-373 (603)
304 PF00350 Dynamin_N: Dynamin fa 99.3 8.2E-11 1.8E-15 86.4 12.8 62 66-130 103-168 (168)
305 PF03029 ATP_bind_1: Conserved 99.3 7.7E-13 1.7E-17 102.2 1.3 111 65-175 92-235 (238)
306 KOG3886 GTP-binding protein [S 99.3 5.3E-12 1.2E-16 94.1 5.5 145 15-162 4-164 (295)
307 COG0378 HypB Ni2+-binding GTPa 99.3 1.5E-11 3.3E-16 89.8 7.7 148 14-175 12-199 (202)
308 KOG1144 Translation initiation 99.3 2.9E-11 6.2E-16 103.3 10.5 163 17-183 477-693 (1064)
309 PF00735 Septin: Septin; Inte 99.3 2.2E-10 4.7E-15 90.7 14.7 135 14-158 3-182 (281)
310 KOG0468 U5 snRNP-specific prot 99.3 2.6E-11 5.6E-16 102.6 9.8 124 5-132 118-261 (971)
311 KOG1532 GTPase XAB1, interacts 99.3 3.7E-11 8E-16 91.9 9.3 171 12-182 16-269 (366)
312 PF05049 IIGP: Interferon-indu 99.2 6E-11 1.3E-15 96.3 9.6 157 12-176 32-217 (376)
313 TIGR00750 lao LAO/AO transport 99.2 5E-11 1.1E-15 95.6 9.0 160 7-177 26-238 (300)
314 TIGR00993 3a0901s04IAP86 chlor 99.2 5.7E-10 1.2E-14 95.6 14.5 123 11-134 114-250 (763)
315 smart00053 DYNc Dynamin, GTPas 99.2 4.8E-10 1E-14 86.4 12.3 68 64-134 125-206 (240)
316 KOG1486 GTP-binding protein DR 99.2 7.8E-10 1.7E-14 83.8 12.8 155 13-176 60-287 (364)
317 COG5019 CDC3 Septin family pro 99.2 3.7E-10 7.9E-15 90.0 11.3 166 10-182 18-224 (373)
318 COG3276 SelB Selenocysteine-sp 99.2 7.4E-10 1.6E-14 90.2 12.8 157 17-177 2-162 (447)
319 PRK10463 hydrogenase nickel in 99.1 7E-11 1.5E-15 92.8 5.8 54 121-174 231-286 (290)
320 KOG0410 Predicted GTP binding 99.1 5.2E-10 1.1E-14 87.6 7.4 157 12-180 175-344 (410)
321 KOG1547 Septin CDC10 and relat 99.0 3.6E-09 7.9E-14 79.7 11.2 186 11-204 42-267 (336)
322 PF00503 G-alpha: G-protein al 99.0 1.5E-09 3.2E-14 90.3 10.1 115 62-176 234-389 (389)
323 KOG2655 Septin family protein 99.0 4.7E-09 1E-13 84.3 12.5 162 11-180 17-217 (366)
324 KOG3887 Predicted small GTPase 99.0 1.5E-09 3.4E-14 81.7 8.7 163 16-181 28-206 (347)
325 COG0012 Predicted GTPase, prob 99.0 8.1E-09 1.8E-13 82.9 13.1 84 15-98 2-108 (372)
326 KOG0705 GTPase-activating prot 99.0 1.4E-09 3E-14 90.4 8.9 166 10-182 25-194 (749)
327 PF03308 ArgK: ArgK protein; 99.0 1.6E-10 3.5E-15 88.5 3.2 159 9-179 23-232 (266)
328 COG1703 ArgK Putative periplas 99.0 1.8E-09 4E-14 83.9 9.0 165 7-184 43-261 (323)
329 cd01900 YchF YchF subfamily. 99.0 1.5E-09 3.2E-14 85.4 8.3 81 18-98 1-103 (274)
330 KOG0460 Mitochondrial translat 99.0 7.1E-09 1.5E-13 81.8 11.2 147 10-159 49-217 (449)
331 cd01855 YqeH YqeH. YqeH is an 99.0 4.2E-09 9.2E-14 79.0 9.4 96 74-176 21-124 (190)
332 cd01859 MJ1464 MJ1464. This f 98.9 1.1E-08 2.3E-13 74.3 8.7 95 77-177 2-96 (156)
333 KOG0464 Elongation factor G [T 98.9 1.7E-09 3.7E-14 87.4 4.6 140 8-153 30-185 (753)
334 PRK12289 GTPase RsgA; Reviewed 98.8 1.4E-08 3E-13 82.8 8.4 92 78-174 80-172 (352)
335 KOG1487 GTP-binding protein DR 98.8 4.3E-08 9.3E-13 74.8 10.0 89 16-106 60-155 (358)
336 cd01854 YjeQ_engC YjeQ/EngC. 98.8 2.2E-08 4.8E-13 79.8 8.7 88 82-174 73-161 (287)
337 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.2E-08 2.6E-13 72.8 6.6 54 17-74 85-138 (141)
338 KOG1954 Endocytosis/signaling 98.8 4.6E-08 9.9E-13 78.2 10.3 119 13-134 56-225 (532)
339 cd04178 Nucleostemin_like Nucl 98.8 1.3E-08 2.7E-13 75.0 6.7 57 13-73 115-171 (172)
340 cd01858 NGP_1 NGP-1. Autoanti 98.8 1.7E-08 3.6E-13 73.4 7.3 56 14-73 101-156 (157)
341 PRK00098 GTPase RsgA; Reviewed 98.8 2.7E-08 5.9E-13 79.7 7.9 86 84-173 77-163 (298)
342 KOG0467 Translation elongation 98.8 3.4E-08 7.4E-13 85.2 8.7 121 8-132 2-136 (887)
343 KOG0099 G protein subunit Galp 98.8 3E-08 6.5E-13 75.7 7.1 123 59-181 197-373 (379)
344 KOG0465 Mitochondrial elongati 98.8 8.2E-08 1.8E-12 81.1 10.3 118 11-132 35-168 (721)
345 PRK12288 GTPase RsgA; Reviewed 98.7 9.1E-08 2E-12 78.0 9.8 87 85-174 118-205 (347)
346 TIGR03597 GTPase_YqeH ribosome 98.7 8.8E-08 1.9E-12 78.7 9.5 95 74-175 50-151 (360)
347 PF09547 Spore_IV_A: Stage IV 98.7 4.6E-07 1E-11 74.1 12.1 153 3-160 5-218 (492)
348 KOG0085 G protein subunit Galp 98.7 3.9E-08 8.4E-13 73.9 5.4 121 61-181 196-353 (359)
349 cd01856 YlqF YlqF. Proteins o 98.7 8.5E-08 1.8E-12 70.7 7.0 58 13-74 113-170 (171)
350 KOG0448 Mitofusin 1 GTPase, in 98.7 1E-06 2.2E-11 75.6 14.0 144 13-160 107-309 (749)
351 TIGR03596 GTPase_YlqF ribosome 98.7 8.9E-08 1.9E-12 76.0 7.4 58 13-74 116-173 (276)
352 COG1618 Predicted nucleotide k 98.6 4.5E-06 9.7E-11 59.6 14.9 147 13-176 3-175 (179)
353 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.2E-07 2.7E-12 75.6 8.0 58 13-74 119-176 (287)
354 COG5258 GTPBP1 GTPase [General 98.6 1.4E-07 3.1E-12 75.8 8.2 154 9-166 111-328 (527)
355 KOG0466 Translation initiation 98.6 2.2E-08 4.7E-13 78.1 2.7 163 12-176 35-240 (466)
356 COG5192 BMS1 GTP-binding prote 98.6 1.1E-06 2.4E-11 74.1 12.7 114 9-134 63-177 (1077)
357 cd01855 YqeH YqeH. YqeH is an 98.6 9.7E-08 2.1E-12 71.6 6.0 57 14-73 126-189 (190)
358 COG1161 Predicted GTPases [Gen 98.6 1.2E-07 2.6E-12 76.6 6.6 58 13-74 130-187 (322)
359 cd01859 MJ1464 MJ1464. This f 98.6 2E-07 4.4E-12 67.6 7.1 57 13-73 99-155 (156)
360 KOG2486 Predicted GTPase [Gene 98.6 1.5E-07 3.3E-12 72.5 6.3 154 12-174 133-313 (320)
361 cd01858 NGP_1 NGP-1. Autoanti 98.6 2.8E-07 6.2E-12 66.9 7.4 89 83-176 4-94 (157)
362 TIGR00092 GTP-binding protein 98.6 3.7E-07 7.9E-12 74.4 8.6 83 16-98 3-108 (368)
363 PRK10416 signal recognition pa 98.6 1E-06 2.3E-11 71.0 11.1 150 14-176 113-309 (318)
364 cd01851 GBP Guanylate-binding 98.5 3.2E-06 7E-11 65.0 12.8 87 12-99 4-103 (224)
365 cd01856 YlqF YlqF. Proteins o 98.5 4.9E-07 1.1E-11 66.6 7.9 99 71-177 2-101 (171)
366 KOG0447 Dynamin-like GTP bindi 98.5 6.7E-06 1.5E-10 69.2 14.8 136 12-150 305-509 (980)
367 TIGR03348 VI_IcmF type VI secr 98.5 9E-07 1.9E-11 83.0 10.6 111 18-133 114-256 (1169)
368 cd01849 YlqF_related_GTPase Yl 98.5 3.8E-07 8.3E-12 66.1 6.3 56 13-73 98-154 (155)
369 PRK14974 cell division protein 98.5 7.9E-07 1.7E-11 72.1 8.4 101 63-176 222-329 (336)
370 KOG1491 Predicted GTP-binding 98.5 7.8E-07 1.7E-11 70.5 8.0 89 10-98 15-125 (391)
371 KOG3859 Septins (P-loop GTPase 98.5 2.1E-06 4.4E-11 66.4 9.8 126 12-147 39-198 (406)
372 cd01849 YlqF_related_GTPase Yl 98.4 1E-06 2.2E-11 63.9 7.7 85 89-177 1-85 (155)
373 TIGR00064 ftsY signal recognit 98.4 2.4E-06 5.1E-11 67.6 10.1 97 62-171 153-262 (272)
374 TIGR01425 SRP54_euk signal rec 98.4 6.1E-06 1.3E-10 68.8 12.4 135 13-157 98-272 (429)
375 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1.1E-06 2.4E-11 62.6 6.8 77 81-163 5-83 (141)
376 KOG4273 Uncharacterized conser 98.4 5.1E-06 1.1E-10 63.4 10.5 163 17-183 6-228 (418)
377 KOG1143 Predicted translation 98.4 1.7E-06 3.7E-11 69.5 7.7 149 14-166 166-377 (591)
378 PF03193 DUF258: Protein of un 98.4 4.8E-07 1E-11 65.3 4.0 59 16-77 36-100 (161)
379 cd03112 CobW_like The function 98.3 4.8E-06 1E-10 60.5 8.9 21 18-38 3-23 (158)
380 PRK12288 GTPase RsgA; Reviewed 98.3 1.1E-06 2.3E-11 71.8 5.9 58 18-78 208-271 (347)
381 PRK12289 GTPase RsgA; Reviewed 98.3 1.1E-06 2.3E-11 71.8 5.9 55 18-75 175-235 (352)
382 TIGR03596 GTPase_YlqF ribosome 98.3 5.4E-06 1.2E-10 65.8 9.5 101 71-179 4-105 (276)
383 PRK09563 rbgA GTPase YlqF; Rev 98.3 4.7E-06 1E-10 66.6 8.7 101 71-179 7-108 (287)
384 PRK13796 GTPase YqeH; Provisio 98.3 8.7E-06 1.9E-10 67.2 10.1 93 75-175 57-157 (365)
385 TIGR00157 ribosome small subun 98.2 3.1E-06 6.7E-11 66.0 6.1 55 17-75 122-182 (245)
386 PRK13796 GTPase YqeH; Provisio 98.2 2.8E-06 6.1E-11 70.0 6.1 56 16-74 161-220 (365)
387 TIGR03597 GTPase_YqeH ribosome 98.2 4.3E-06 9.4E-11 68.8 6.7 57 16-75 155-215 (360)
388 KOG1424 Predicted GTP-binding 98.2 3E-06 6.6E-11 70.6 5.8 61 11-75 310-370 (562)
389 PRK01889 GTPase RsgA; Reviewed 98.2 9.5E-06 2.1E-10 66.7 8.2 83 85-173 110-193 (356)
390 cd03115 SRP The signal recogni 98.2 2.3E-05 5E-10 57.7 9.4 84 63-156 82-171 (173)
391 KOG0463 GTP-binding protein GP 98.2 1.6E-05 3.4E-10 64.2 8.8 116 14-134 132-287 (641)
392 PRK14722 flhF flagellar biosyn 98.1 2.6E-05 5.7E-10 64.0 9.4 140 15-158 137-315 (374)
393 KOG0469 Elongation factor 2 [T 98.1 9.2E-06 2E-10 67.8 6.5 139 6-148 10-179 (842)
394 PRK13695 putative NTPase; Prov 98.1 0.00012 2.7E-09 53.9 12.0 79 82-176 91-172 (174)
395 PRK12727 flagellar biosynthesi 98.1 7.2E-05 1.6E-09 63.8 11.8 137 15-165 350-523 (559)
396 COG1162 Predicted GTPases [Gen 98.1 8E-06 1.7E-10 64.5 5.5 58 17-77 166-229 (301)
397 PF00448 SRP54: SRP54-type pro 98.1 2.5E-05 5.5E-10 58.7 8.1 137 16-165 2-179 (196)
398 PRK14721 flhF flagellar biosyn 98.1 7E-05 1.5E-09 62.5 11.2 152 15-179 191-380 (420)
399 PRK00098 GTPase RsgA; Reviewed 98.0 1.1E-05 2.4E-10 64.8 6.0 56 17-75 166-227 (298)
400 COG3523 IcmF Type VI protein s 98.0 3.7E-05 8E-10 71.1 9.7 114 19-134 129-270 (1188)
401 PRK05703 flhF flagellar biosyn 98.0 0.00019 4.1E-09 60.4 13.3 95 63-169 299-401 (424)
402 PRK11889 flhF flagellar biosyn 98.0 3E-05 6.4E-10 63.8 8.1 140 15-166 241-417 (436)
403 cd03114 ArgK-like The function 98.0 2.6E-05 5.6E-10 56.0 7.0 58 63-131 91-148 (148)
404 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.3E-05 2.9E-10 63.9 6.0 59 16-77 162-226 (287)
405 PRK00771 signal recognition pa 98.0 6.4E-05 1.4E-09 63.2 10.1 136 13-158 93-266 (437)
406 PF03266 NTPase_1: NTPase; In 98.0 4.2E-05 9.1E-10 56.1 8.0 134 17-164 1-162 (168)
407 PRK10867 signal recognition pa 98.0 8.2E-05 1.8E-09 62.4 10.5 86 63-158 183-274 (433)
408 PRK11537 putative GTP-binding 97.9 0.00013 2.8E-09 59.1 10.7 85 64-158 91-186 (318)
409 TIGR00959 ffh signal recogniti 97.9 0.00017 3.6E-09 60.6 11.5 86 63-158 182-273 (428)
410 KOG0459 Polypeptide release fa 97.9 1.2E-05 2.5E-10 65.4 4.3 159 11-170 75-279 (501)
411 PRK06995 flhF flagellar biosyn 97.9 0.00015 3.2E-09 61.6 10.7 142 16-169 257-435 (484)
412 PF06858 NOG1: Nucleolar GTP-b 97.9 5.2E-05 1.1E-09 44.4 5.3 47 84-131 10-58 (58)
413 cd02038 FleN-like FleN is a me 97.9 4.3E-05 9.4E-10 54.2 6.1 105 19-133 4-110 (139)
414 COG1162 Predicted GTPases [Gen 97.9 0.00013 2.7E-09 57.8 8.8 95 78-175 70-165 (301)
415 PRK14723 flhF flagellar biosyn 97.8 0.00025 5.3E-09 63.2 11.5 153 16-178 186-376 (767)
416 PF02492 cobW: CobW/HypB/UreG, 97.8 3.4E-05 7.3E-10 57.2 5.2 83 63-151 84-171 (178)
417 COG0523 Putative GTPases (G3E 97.8 0.00063 1.4E-08 55.0 12.8 135 18-159 4-184 (323)
418 cd02042 ParA ParA and ParB of 97.8 0.00013 2.7E-09 49.0 7.6 82 18-111 2-84 (104)
419 PRK12723 flagellar biosynthesi 97.8 0.00063 1.4E-08 56.4 12.6 154 14-179 173-366 (388)
420 COG1419 FlhF Flagellar GTP-bin 97.8 0.00051 1.1E-08 56.5 11.5 134 15-158 203-372 (407)
421 KOG0780 Signal recognition par 97.8 0.00013 2.9E-09 59.2 7.8 104 7-110 93-236 (483)
422 PRK12726 flagellar biosynthesi 97.8 0.00025 5.3E-09 58.3 9.3 140 15-166 206-382 (407)
423 KOG1534 Putative transcription 97.7 2.9E-05 6.4E-10 57.8 2.8 22 16-37 4-25 (273)
424 KOG2484 GTPase [General functi 97.7 3.9E-05 8.5E-10 62.3 3.6 58 12-73 249-306 (435)
425 PRK12724 flagellar biosynthesi 97.7 0.00069 1.5E-08 56.5 10.8 135 15-159 223-394 (432)
426 PRK06731 flhF flagellar biosyn 97.7 0.00046 1E-08 54.4 9.4 139 16-166 76-251 (270)
427 COG3640 CooC CO dehydrogenase 97.7 0.00046 1E-08 52.5 8.7 78 64-153 134-212 (255)
428 KOG2485 Conserved ATP/GTP bind 97.6 5.8E-05 1.3E-09 59.5 3.7 61 12-73 140-205 (335)
429 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00063 1.4E-08 44.5 8.0 76 18-108 2-78 (99)
430 cd03222 ABC_RNaseL_inhibitor T 97.6 0.0027 5.8E-08 47.0 12.0 87 17-114 27-118 (177)
431 cd00009 AAA The AAA+ (ATPases 97.6 0.00091 2E-08 47.0 9.1 25 16-40 20-44 (151)
432 cd03111 CpaE_like This protein 97.6 0.00054 1.2E-08 46.2 7.3 100 21-129 6-106 (106)
433 PF11111 CENP-M: Centromere pr 97.5 0.0047 1E-07 44.9 12.2 140 12-176 12-152 (176)
434 COG0541 Ffh Signal recognition 97.5 0.001 2.2E-08 55.1 9.4 116 12-133 97-252 (451)
435 PF13401 AAA_22: AAA domain; P 97.5 0.00019 4E-09 50.1 4.5 23 17-39 6-28 (131)
436 cd03110 Fer4_NifH_child This p 97.5 0.0018 3.8E-08 47.9 9.9 86 62-156 91-176 (179)
437 PF00004 AAA: ATPase family as 97.4 0.0019 4.2E-08 44.8 8.8 22 18-39 1-22 (132)
438 PRK14738 gmk guanylate kinase; 97.4 0.00019 4.1E-09 54.5 3.7 31 9-39 7-37 (206)
439 TIGR02475 CobW cobalamin biosy 97.4 0.0048 1E-07 50.5 12.1 21 18-38 7-27 (341)
440 PF13207 AAA_17: AAA domain; P 97.4 0.00017 3.7E-09 49.7 3.2 22 17-38 1-22 (121)
441 cd02036 MinD Bacterial cell di 97.4 0.0079 1.7E-07 44.2 12.2 84 65-155 64-147 (179)
442 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.01 2.2E-07 42.3 12.2 23 17-39 28-50 (144)
443 KOG1533 Predicted GTPase [Gene 97.3 8.2E-05 1.8E-09 56.4 1.3 69 63-133 96-176 (290)
444 PRK08118 topology modulation p 97.3 0.0002 4.3E-09 52.5 3.1 22 17-38 3-24 (167)
445 TIGR00150 HI0065_YjeE ATPase, 97.3 0.0016 3.4E-08 45.7 7.2 23 17-39 24-46 (133)
446 COG0563 Adk Adenylate kinase a 97.3 0.00023 5E-09 52.7 3.1 23 16-38 1-23 (178)
447 PF13555 AAA_29: P-loop contai 97.3 0.00031 6.8E-09 42.1 3.1 21 17-37 25-45 (62)
448 PRK07261 topology modulation p 97.3 0.00025 5.5E-09 52.2 3.2 22 17-38 2-23 (171)
449 PF13671 AAA_33: AAA domain; P 97.2 0.00026 5.6E-09 50.2 2.9 21 18-38 2-22 (143)
450 COG0552 FtsY Signal recognitio 97.2 0.0023 4.9E-08 51.4 8.2 145 12-169 136-327 (340)
451 COG1116 TauB ABC-type nitrate/ 97.2 0.00038 8.2E-09 53.5 3.7 23 18-40 32-54 (248)
452 PF05621 TniB: Bacterial TniB 97.2 0.003 6.6E-08 50.2 8.7 105 11-129 57-189 (302)
453 cd02019 NK Nucleoside/nucleoti 97.2 0.00048 1E-08 42.6 3.1 22 18-39 2-23 (69)
454 PF13521 AAA_28: AAA domain; P 97.1 0.00027 5.9E-09 51.5 2.2 22 17-38 1-22 (163)
455 COG1126 GlnQ ABC-type polar am 97.1 0.00061 1.3E-08 51.3 3.9 24 17-40 30-53 (240)
456 PRK14737 gmk guanylate kinase; 97.1 0.00044 9.5E-09 51.6 3.2 24 16-39 5-28 (186)
457 COG1136 SalX ABC-type antimicr 97.1 0.00053 1.2E-08 52.3 3.7 23 18-40 34-56 (226)
458 COG0194 Gmk Guanylate kinase [ 97.1 0.00028 6E-09 51.9 2.0 24 16-39 5-28 (191)
459 cd00071 GMPK Guanosine monopho 97.1 0.00062 1.3E-08 48.2 3.6 21 18-38 2-22 (137)
460 PRK10646 ADP-binding protein; 97.1 0.006 1.3E-07 43.8 8.4 23 17-39 30-52 (153)
461 PRK04195 replication factor C 97.1 0.017 3.6E-07 49.8 12.7 25 15-39 39-63 (482)
462 PF00005 ABC_tran: ABC transpo 97.1 0.00054 1.2E-08 48.2 3.1 23 17-39 13-35 (137)
463 COG4619 ABC-type uncharacteriz 97.0 0.0022 4.7E-08 46.6 6.0 56 17-88 31-86 (223)
464 PF07015 VirC1: VirC1 protein; 97.0 0.0083 1.8E-07 45.9 9.2 103 63-170 83-187 (231)
465 COG0802 Predicted ATPase or ki 97.0 0.0046 9.9E-08 43.9 7.2 26 15-40 25-50 (149)
466 PRK01889 GTPase RsgA; Reviewed 97.0 0.00082 1.8E-08 55.4 4.0 25 16-40 196-220 (356)
467 cd01131 PilT Pilus retraction 97.0 0.0045 9.7E-08 46.7 7.5 22 18-39 4-25 (198)
468 KOG2423 Nucleolar GTPase [Gene 97.0 0.00069 1.5E-08 55.3 3.1 81 16-103 308-390 (572)
469 smart00382 AAA ATPases associa 96.9 0.00086 1.9E-08 46.7 3.3 25 17-41 4-28 (148)
470 PRK05416 glmZ(sRNA)-inactivati 96.9 0.013 2.8E-07 46.8 10.3 20 17-36 8-27 (288)
471 PF13238 AAA_18: AAA domain; P 96.9 0.00073 1.6E-08 46.8 2.8 21 18-38 1-21 (129)
472 KOG0066 eIF2-interacting prote 96.9 0.012 2.5E-07 49.3 9.9 28 13-40 611-638 (807)
473 PF04665 Pox_A32: Poxvirus A32 96.9 0.00078 1.7E-08 52.0 3.1 28 12-39 10-37 (241)
474 PF02367 UPF0079: Uncharacteri 96.9 0.0025 5.5E-08 44.0 5.3 24 16-39 16-39 (123)
475 PF03205 MobB: Molybdopterin g 96.9 0.00087 1.9E-08 47.6 3.0 23 17-39 2-24 (140)
476 PRK06217 hypothetical protein; 96.9 0.00092 2E-08 49.7 3.3 23 16-38 2-24 (183)
477 PRK10078 ribose 1,5-bisphospho 96.9 0.00093 2E-08 49.8 3.3 23 17-39 4-26 (186)
478 COG3840 ThiQ ABC-type thiamine 96.9 0.0012 2.5E-08 48.6 3.6 25 17-41 27-51 (231)
479 TIGR00235 udk uridine kinase. 96.9 0.0011 2.3E-08 50.4 3.6 26 13-38 4-29 (207)
480 cd00820 PEPCK_HprK Phosphoenol 96.9 0.00096 2.1E-08 44.8 2.9 20 17-36 17-36 (107)
481 TIGR02322 phosphon_PhnN phosph 96.9 0.00089 1.9E-08 49.5 3.0 22 17-38 3-24 (179)
482 COG1161 Predicted GTPases [Gen 96.9 0.0023 5E-08 52.0 5.4 94 70-170 16-110 (322)
483 PRK03839 putative kinase; Prov 96.8 0.001 2.2E-08 49.3 3.1 22 17-38 2-23 (180)
484 COG3839 MalK ABC-type sugar tr 96.8 0.0013 2.8E-08 53.3 3.7 23 18-40 32-54 (338)
485 PRK14530 adenylate kinase; Pro 96.8 0.0012 2.5E-08 50.5 3.3 21 17-37 5-25 (215)
486 KOG3347 Predicted nucleotide k 96.8 0.00092 2E-08 47.3 2.4 26 12-37 4-29 (176)
487 cd01130 VirB11-like_ATPase Typ 96.8 0.0012 2.6E-08 49.2 3.3 25 15-39 25-49 (186)
488 cd03238 ABC_UvrA The excision 96.8 0.0013 2.8E-08 48.6 3.3 22 16-37 22-43 (176)
489 TIGR03263 guanyl_kin guanylate 96.8 0.0012 2.6E-08 48.8 3.1 23 17-39 3-25 (180)
490 cd02023 UMPK Uridine monophosp 96.8 0.0011 2.4E-08 49.9 2.9 22 18-39 2-23 (198)
491 cd03216 ABC_Carb_Monos_I This 96.8 0.0077 1.7E-07 43.9 7.3 24 17-40 28-51 (163)
492 cd01129 PulE-GspE PulE/GspE Th 96.8 0.011 2.5E-07 46.6 8.7 23 17-39 82-104 (264)
493 COG1120 FepC ABC-type cobalami 96.8 0.0012 2.6E-08 51.5 3.1 21 18-38 31-51 (258)
494 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0012 2.7E-08 49.0 3.0 21 17-37 5-25 (188)
495 PRK05480 uridine/cytidine kina 96.8 0.0014 3E-08 49.9 3.3 25 14-38 5-29 (209)
496 cd04178 Nucleostemin_like Nucl 96.8 0.0092 2E-07 43.9 7.5 42 89-134 1-44 (172)
497 PF05673 DUF815: Protein of un 96.7 0.009 1.9E-07 46.2 7.6 25 14-38 51-75 (249)
498 PRK13851 type IV secretion sys 96.7 0.0095 2.1E-07 48.8 8.2 26 14-39 161-186 (344)
499 PF07728 AAA_5: AAA domain (dy 96.7 0.0015 3.2E-08 46.2 3.1 22 17-38 1-22 (139)
500 PRK13949 shikimate kinase; Pro 96.7 0.0015 3.3E-08 48.0 3.1 22 17-38 3-24 (169)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-42 Score=247.72 Aligned_cols=180 Identities=49% Similarity=0.822 Sum_probs=170.7
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382 8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87 (224)
Q Consensus 8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 87 (224)
++....+.+||+|+|+.|||||+|+.|+.+..+...+..|+|+++..+++.++++.+.+++|||+|+++++++...|+++
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEcCCCCCCHH
Q 027382 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNVE 166 (224)
Q Consensus 88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~ 166 (224)
|+|+|+|||+++.+||..+..|+..+.++...++|.++|+||+|+.+.+.++.+++++|+.+++++ |+++||+++.|++
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence 999999999999999999999999999999889999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCc
Q 027382 167 TAFLTVLTEIYRIISKKSLTA 187 (224)
Q Consensus 167 ~~~~~i~~~i~~~~~~~~~~~ 187 (224)
++|..+...+.++........
T Consensus 162 ~~F~~la~~lk~~~~~~~~~~ 182 (205)
T KOG0084|consen 162 DAFLTLAKELKQRKGLHVKWS 182 (205)
T ss_pred HHHHHHHHHHHHhcccCCCCC
Confidence 999999988877766654444
No 2
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-40 Score=239.93 Aligned_cols=177 Identities=44% Similarity=0.816 Sum_probs=169.6
Q ss_pred CCCc-ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHh
Q 027382 7 DYNQ-KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYY 85 (224)
Q Consensus 7 ~~~~-~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~ 85 (224)
.+++ ++...+||+++|+++||||+|+.++..+.+...+..|.|+++..+++.+++..+.+++|||+|+++++.+...|+
T Consensus 3 ~~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYy 82 (207)
T KOG0078|consen 3 AMAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYY 82 (207)
T ss_pred ccccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHH
Confidence 3455 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382 86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 165 (224)
Q Consensus 86 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 165 (224)
+.|+++++|||+++..|++.+..|+..+.++...++|.++|+||+|+.+.++++.+..++++.++|+.|+|+||++|.||
T Consensus 83 rgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI 162 (207)
T KOG0078|consen 83 RGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNI 162 (207)
T ss_pred hhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 027382 166 ETAFLTVLTEIYRIISKK 183 (224)
Q Consensus 166 ~~~~~~i~~~i~~~~~~~ 183 (224)
+++|..+.+.+.......
T Consensus 163 ~eaF~~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 163 EEAFLSLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHHHHHHhhcchh
Confidence 999999999998755544
No 3
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-40 Score=238.14 Aligned_cols=184 Identities=71% Similarity=1.128 Sum_probs=175.4
Q ss_pred CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhc
Q 027382 7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYR 86 (224)
Q Consensus 7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~ 86 (224)
....++++.+||+++|++++|||-|+.++..+++...+.+|+|+++.+..+.++++.+..++|||+|+++|++....|++
T Consensus 6 ~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYr 85 (222)
T KOG0087|consen 6 DKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYR 85 (222)
T ss_pred CCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382 87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 166 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 166 (224)
++.++++|||++...+|+.+.+|+..++.+...++++++|+||+||..-+.++.++++.++++.++.|+++||.++.|++
T Consensus 86 gAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe 165 (222)
T KOG0087|consen 86 GAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVE 165 (222)
T ss_pred ccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHH
Confidence 99999999999999999999999999999998999999999999998888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCcCcc
Q 027382 167 TAFLTVLTEIYRIISKKSLTANDE 190 (224)
Q Consensus 167 ~~~~~i~~~i~~~~~~~~~~~~~~ 190 (224)
++|..++..|++...++.......
T Consensus 166 ~aF~~~l~~I~~~vs~k~~~~~~~ 189 (222)
T KOG0087|consen 166 KAFERVLTEIYKIVSKKQLDENND 189 (222)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccc
Confidence 999999999999998876665543
No 4
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-40 Score=236.73 Aligned_cols=198 Identities=42% Similarity=0.707 Sum_probs=173.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
...+||+++|+.+||||||+.|+..+.+.....+|+|..+.++.+.+....+++.+|||+|+++|+++.+.|+++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 45789999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 172 (224)
+|||+++.+||..++.|+..+.+..++++.+.+++||+|+.+.+++..++++.++...++.|+++||++|.|+.++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999988888899999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCcCccccccCCccCCCCeeeeecCCCCCCCCCCcccc
Q 027382 173 LTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCL 222 (224)
Q Consensus 173 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 222 (224)
.+.+......... +.+..+++..+...+ .....++||+
T Consensus 163 a~~lp~~~~~~~~---------~~~~~~~g~~l~~~~---~~~~~~~~C~ 200 (200)
T KOG0092|consen 163 AEKLPCSDPQERQ---------GLPNRRQGVDLNSNQ---EPARPSGCCA 200 (200)
T ss_pred HHhccCccccccc---------cccccccceecccCC---CCcCcCCcCC
Confidence 9888655444332 222222333333332 4446777874
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-40 Score=235.77 Aligned_cols=168 Identities=37% Similarity=0.695 Sum_probs=159.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
..+||+++|+.+|||||||+++..+.+...|.+|+|+++...++.+.+..+.+++|||+|+++|+.+.+.|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCC-CCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHADK-NIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 172 (224)
|||+++..||+...+|++.+.+.+.. ++.+++|+||.||.+.+++..++.+..++++++.|+++||+.|.||.++|..|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI 180 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI 180 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence 99999999999999999999988874 58899999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHh
Q 027382 173 LTEIYRIIS 181 (224)
Q Consensus 173 ~~~i~~~~~ 181 (224)
...+.+...
T Consensus 181 aa~l~~~~~ 189 (221)
T KOG0094|consen 181 AAALPGMEV 189 (221)
T ss_pred HHhccCccc
Confidence 776655544
No 6
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-39 Score=230.24 Aligned_cols=179 Identities=51% Similarity=0.869 Sum_probs=170.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
+.+.+|++++|+.|||||+|+.++....+.+.+..|.|.++....+.++++.+++++|||+|++.+++....|++.+-++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT 171 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 171 (224)
|+|||++.+++|..+..|+..++++...+..+++++||+||...+.++.+|.+.|++++++.++++||++++|++++|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCcCcc
Q 027382 172 VLTEIYRIISKKSLTANDE 190 (224)
Q Consensus 172 i~~~i~~~~~~~~~~~~~~ 190 (224)
....|++..+..-.....+
T Consensus 163 ta~~Iy~~~q~g~~~~~~~ 181 (216)
T KOG0098|consen 163 TAKEIYRKIQDGVFDDINE 181 (216)
T ss_pred HHHHHHHHHHhcccccccc
Confidence 9999999988765555444
No 7
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.6e-38 Score=220.55 Aligned_cols=202 Identities=41% Similarity=0.658 Sum_probs=173.4
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
.+...+||+++|.+|+|||||+-++..+.+......|+|.++..+.+.+++..+++.+|||+|+++|+.+.+.|+++|.+
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 45677999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 169 (224)
+|+|||++.+++|..+..|++.+.-... +++..++|+||+|.+.++.++.++...|++++++.|+++||++.+|+...|
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 9999999999999999999999987663 678889999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCcCccccccCCccCCCCeeeeecCCCCCCCCCCccccC
Q 027382 170 LTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCLS 223 (224)
Q Consensus 170 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 223 (224)
+.+++.|++.-.-+...+. ..+-.|--.|..+.+..+++||.|
T Consensus 167 eelveKIi~tp~l~~~~n~-----------~~~~~i~~~p~~~~~~~~g~~Cs~ 209 (209)
T KOG0080|consen 167 EELVEKIIETPSLWEEGNS-----------SAGLDIASDPDGEASAHQGGCCSC 209 (209)
T ss_pred HHHHHHHhcCcchhhccCC-----------ccccccccCCCcccccccCCccCC
Confidence 9999988764333321110 111112223344445566889976
No 8
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=5.8e-37 Score=234.48 Aligned_cols=208 Identities=65% Similarity=1.019 Sum_probs=172.3
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
+.++.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 45678999999999999999999999999888888888888888888888889999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
+|+|||++++++++.+..|+..+.+....++|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998877666899999999999977777788889999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCcCccccccCCccCCCCeeeeecCCCCCCCCCCcccc
Q 027382 171 TVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCL 222 (224)
Q Consensus 171 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 222 (224)
.++..+.+.............+..+++ .++..+.. .+..+.+++|||.
T Consensus 168 ~l~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~c~ 215 (216)
T PLN03110 168 TILLEIYHIISKKALAAQEAAANSGLP--GQGTTINV--ADTSGNNKRGCCS 215 (216)
T ss_pred HHHHHHHHHhhccccccccCcccccCc--CcCCcccc--cCccCCCCCCCcC
Confidence 999999887554433222112111222 22332322 2335667788873
No 9
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=9.6e-37 Score=231.11 Aligned_cols=168 Identities=38% Similarity=0.659 Sum_probs=150.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.++ +..+.+.+||+||++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999888888998888877777777 7889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcC----CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHH
Q 027382 95 YDMTKRQSFDHMARWLDELRGHA----DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN-LFFMETSALEATNVETAF 169 (224)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~~ 169 (224)
||++++++++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++++++++.++ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998876532 2578999999999997666778889999999998 689999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 027382 170 LTVLTEIYRIISKK 183 (224)
Q Consensus 170 ~~i~~~i~~~~~~~ 183 (224)
.++++.+.+.....
T Consensus 161 ~~l~~~l~~~~~~~ 174 (201)
T cd04107 161 RFLVKNILANDKNL 174 (201)
T ss_pred HHHHHHHHHhchhh
Confidence 99999887654443
No 10
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.9e-36 Score=226.45 Aligned_cols=171 Identities=36% Similarity=0.647 Sum_probs=155.7
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
..+..+||+++|..|||||||+.++.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|+
T Consensus 2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 35678999999999999999999999988877777787888877888888899999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
+|+|||++++++++.+..|+..+.+.. .+.|++||+||.|+...+.++.++++.+++.++++|+++||++|.|++++|.
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT 160 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 999999999999999999999997765 4799999999999987778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 027382 171 TVLTEIYRIISK 182 (224)
Q Consensus 171 ~i~~~i~~~~~~ 182 (224)
++...+......
T Consensus 161 ~l~~~i~~~~~~ 172 (189)
T cd04121 161 ELARIVLMRHGR 172 (189)
T ss_pred HHHHHHHHhcCC
Confidence 999888755443
No 11
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=3.3e-36 Score=227.16 Aligned_cols=165 Identities=38% Similarity=0.745 Sum_probs=151.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+.|+++|..|||||||++++..+.+...+.+|.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999998888899888888888888888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE-NLFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
|++++++++.+..|+..+.+....+.|+++|+||+|+.+.+.+..++++++++++ ++.|+++||++|.|++++|.+++.
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887766668999999999999877888888999999885 788999999999999999999998
Q ss_pred HHHHHH
Q 027382 175 EIYRII 180 (224)
Q Consensus 175 ~i~~~~ 180 (224)
.+.+..
T Consensus 161 ~~~~~~ 166 (202)
T cd04120 161 DILKKM 166 (202)
T ss_pred HHHHhC
Confidence 886653
No 12
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=211.88 Aligned_cols=172 Identities=46% Similarity=0.759 Sum_probs=163.6
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382 10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAV 89 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 89 (224)
..+...++.+++|++|+|||+|+.++..+.+..+|..|+|+++..+++.+++..+.+.+||++|++.++.+...+++..+
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence 34667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382 90 GAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169 (224)
Q Consensus 90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 169 (224)
++|+|||+++.+||.+..+|+..+++.+. .+|-++|+||.|.++.+.+..++++.|+...++.+|++|+++++|++..|
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF 161 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence 99999999999999999999999998876 89999999999999989999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 027382 170 LTVLTEIYRIISK 182 (224)
Q Consensus 170 ~~i~~~i~~~~~~ 182 (224)
.-|...+++...+
T Consensus 162 ~cit~qvl~~k~r 174 (198)
T KOG0079|consen 162 HCITKQVLQAKLR 174 (198)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887733
No 13
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.4e-35 Score=224.71 Aligned_cols=208 Identities=39% Similarity=0.685 Sum_probs=172.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI-DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||++|++.+..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999988888888888887777776 4667899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 172 (224)
|||++++++++.+..|+..+.+... ...|+++|+||.|+.+.+.+..++..++++.++++++++||++|.|++++|+.|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998876543 457889999999998777788889999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCcCccccccCCccCCCCeeeeecCCCCCCCCCCcccc
Q 027382 173 LTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCCL 222 (224)
Q Consensus 173 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 222 (224)
.+.+.+.+..........-.-...-...+...-+....+....-..+|||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
T cd04111 162 TQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCCC 211 (211)
T ss_pred HHHHHHHhhcCCCCccccccccccCCCcccccccCcccccccCCCCCCCC
Confidence 99998887766544444443333444444444455555665555556664
No 14
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-36 Score=208.54 Aligned_cols=208 Identities=44% Similarity=0.707 Sum_probs=184.4
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA 88 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 88 (224)
-+.+++.+|++++|+.|+|||.|+++++.+.+.....+|+|+++....+.+.++.+++++|||.|++.+++..+.|++++
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA 168 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 168 (224)
-+.++|||+++++++..+..|+...+....+++.+++++||.|+...++++..++.+|++++.+.+.++|+++|+|+++.
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCcCccccccCCccCCCCeeeee--cCCCCCCCCCCcc
Q 027382 169 FLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIV--PGQDQNSASKRGC 220 (224)
Q Consensus 169 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~c 220 (224)
|-.....|+.++...+..+++. +.-...++..+-+ +|+.....++..|
T Consensus 163 Fl~c~~tIl~kIE~GElDPer~----gsGIQYGdaslR~l~~p~s~r~~n~~~c 212 (214)
T KOG0086|consen 163 FLKCARTILNKIESGELDPERM----GSGIQYGDASLRQLRQPRSARAVNPQPC 212 (214)
T ss_pred HHHHHHHHHHHHhhcCCCHHHc----ccccccchhhhhccCCcchhccCCCCCC
Confidence 9999999999888877766553 2334445544433 3333344555555
No 15
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.5e-36 Score=215.57 Aligned_cols=172 Identities=37% Similarity=0.656 Sum_probs=159.6
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
.+...+||+++|++|+|||||++++.+..+...+..|+|.++..+.+.+++..+.+++|||+|+++|.++...+++++|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCC----CCCcEEEEEeCCCCCCC--CCCCHHHHHHHHHHcC-CeEEEEcCCCCC
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKCDLGSL--RAVPTEDAQEFAQREN-LFFMETSALEAT 163 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~s~~~~~ 163 (224)
+++|||++++.+++.+..|.+.+..... ...|+|+++||+|+++. ++++...+++||...+ +||+++|||+..
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999998876653 57899999999999753 7889999999998865 899999999999
Q ss_pred CHHHHHHHHHHHHHHHHhc
Q 027382 164 NVETAFLTVLTEIYRIISK 182 (224)
Q Consensus 164 ~v~~~~~~i~~~i~~~~~~ 182 (224)
||+++|..+...++.....
T Consensus 165 NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANEDR 183 (210)
T ss_pred cHHHHHHHHHHHHHhccch
Confidence 9999999999988776654
No 16
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=6.1e-35 Score=220.83 Aligned_cols=171 Identities=46% Similarity=0.727 Sum_probs=153.6
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
++..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 34689999999999999999999999988878888888888777787888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT 171 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 171 (224)
++|||++++++++.+..|+..+.... ...|+++|+||+|+.+...+..+++.+++...+.+++++|+++|.|++++|++
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 99999999999999999999887654 37899999999999876677788899999998999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 027382 172 VLTEIYRIISKK 183 (224)
Q Consensus 172 i~~~i~~~~~~~ 183 (224)
+...+.......
T Consensus 162 l~~~~~~~~~~~ 173 (199)
T cd04110 162 ITELVLRAKKDN 173 (199)
T ss_pred HHHHHHHhhhcc
Confidence 999887665444
No 17
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=220.92 Aligned_cols=207 Identities=46% Similarity=0.816 Sum_probs=169.1
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
.++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34679999999999999999999999988888888888888877888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT 171 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 171 (224)
++|||+++++++..+..|+..+........|+++++||+|+.+.+.+..++++++++.++++++++||+++.|++++|.+
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998877665568999999999999877778889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCcCccccccCCccCCCC-eeeeecCCCCCCCCCCccc
Q 027382 172 VLTEIYRIISKKSLTANDEHDVAGNSNLLKG-TRIIVPGQDQNSASKRGCC 221 (224)
Q Consensus 172 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~c~ 221 (224)
+++.+++.......... +.......+.+ ..=-.-+.+-.+.+.+|||
T Consensus 163 l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
T PLN03108 163 TAAKIYKKIQDGVFDVS---NESYGIKVGYGAIPGASGGRDGTSSQGGGCC 210 (210)
T ss_pred HHHHHHHHhhhcccccc---ccccccccccCCCCCCCCCccccccCCCCCC
Confidence 99998876543322111 11111111111 1111234666777888998
No 18
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2.9e-35 Score=224.38 Aligned_cols=187 Identities=34% Similarity=0.543 Sum_probs=155.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|.+|||||||+++|.++.+.. +.++.+..+.... ...+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~----~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQ----WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEE----eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998864 5667665554332 35678999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC-------------------CCCCCHHHHHHHHHHcC-----
Q 027382 96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS-------------------LRAVPTEDAQEFAQREN----- 151 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 151 (224)
|++++++++.+..|+..+.+....+.|+++|+||+|+.+ .+.+..++++.++++.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999988777765556799999999999965 57788899999999876
Q ss_pred ---------CeEEEEcCCCCCCHHHHHHHHHHHHHHHHhcccCCcCccccccCCccCCCCeeeeecCCCCCCCCCCccc
Q 027382 152 ---------LFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGCC 221 (224)
Q Consensus 152 ---------~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 221 (224)
++|+++||++|.||+++|..++..+++.........++-+..+ .++..+++|++||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTV--------------NLPNPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccc--------------cCCCcccCCCCCC
Confidence 6799999999999999999999999888777655444421111 1334677899998
No 19
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-36 Score=205.44 Aligned_cols=177 Identities=41% Similarity=0.750 Sum_probs=166.2
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA 88 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 88 (224)
++.+...+||+++|..|+|||.|++++..+-+++....|+|.++..+++.+++..+++++|||.|+++++++...|++.+
T Consensus 1 medykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsa 80 (213)
T KOG0095|consen 1 MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (213)
T ss_pred CcccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA 168 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 168 (224)
+++|+|||++...+|+-+.+|+..+.+.....+.-++|+||+|+.+.++++.+..++|.......|.++||++.+|++.+
T Consensus 81 halilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 81 HALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL 160 (213)
T ss_pred ceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence 99999999999999999999999999998878889999999999998899999999999998889999999999999999
Q ss_pred HHHHHHHHHHHHhcccC
Q 027382 169 FLTVLTEIYRIISKKSL 185 (224)
Q Consensus 169 ~~~i~~~i~~~~~~~~~ 185 (224)
|..+.-.+.........
T Consensus 161 f~~~a~rli~~ar~~d~ 177 (213)
T KOG0095|consen 161 FLDLACRLISEARQNDL 177 (213)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99998877776655544
No 20
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.1e-34 Score=222.01 Aligned_cols=164 Identities=34% Similarity=0.555 Sum_probs=148.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECC-eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH-KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
+||+++|++|||||||+++|.+..+...+.+|.+.++....+.+++ ..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888999988888777777754 578999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382 95 YDMTKRQSFDHMARWLDELRGHAD---KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT 171 (224)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 171 (224)
||++++++++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..+++.++++.++++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999998887642 35789999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027382 172 VLTEIYRI 179 (224)
Q Consensus 172 i~~~i~~~ 179 (224)
+...+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99888764
No 21
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2e-34 Score=216.21 Aligned_cols=168 Identities=45% Similarity=0.778 Sum_probs=151.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999987778888888887777888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
|+++++++..+..|+..+........|+++++||.|+.+.+.+..+++..++...+++++++||++|.|++++|.++++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887666678999999999998767778888889999889999999999999999999999999
Q ss_pred HHHHHhcc
Q 027382 176 IYRIISKK 183 (224)
Q Consensus 176 i~~~~~~~ 183 (224)
+.+.....
T Consensus 161 ~~~~~~~~ 168 (188)
T cd04125 161 IIKRLEEQ 168 (188)
T ss_pred HHHHhhcC
Confidence 87654433
No 22
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-35 Score=202.08 Aligned_cols=177 Identities=40% Similarity=0.743 Sum_probs=166.6
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382 8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87 (224)
Q Consensus 8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 87 (224)
..+..+..+|++++|...+|||||+.++.+..+...+..|.|+++..+++.-..+.+.+++|||.|++.++.+...++++
T Consensus 14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRg 93 (193)
T KOG0093|consen 14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRG 93 (193)
T ss_pred ccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhc
Confidence 34456778899999999999999999999999999999999999999988777888999999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET 167 (224)
Q Consensus 88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 167 (224)
++++|++||+++.+++..+..|...+......+.|+|+++||+|+++++.++.+..+.++.++|+.|+++||+.+.|+++
T Consensus 94 amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~ 173 (193)
T KOG0093|consen 94 AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQ 173 (193)
T ss_pred cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHH
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccc
Q 027382 168 AFLTVLTEIYRIISKKS 184 (224)
Q Consensus 168 ~~~~i~~~i~~~~~~~~ 184 (224)
+|+.++..|...+....
T Consensus 174 ~Fe~lv~~Ic~kmsesl 190 (193)
T KOG0093|consen 174 VFERLVDIICDKMSESL 190 (193)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999988876553
No 23
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.5e-34 Score=212.75 Aligned_cols=164 Identities=49% Similarity=0.877 Sum_probs=150.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
.+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999988888888888888777788888899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382 95 YDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.++++..+++++++||++|.|++++|..+..
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887766667999999999999877778888999999999999999999999999999999998
Q ss_pred HHHH
Q 027382 175 EIYR 178 (224)
Q Consensus 175 ~i~~ 178 (224)
.+++
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 7754
No 24
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.2e-34 Score=219.87 Aligned_cols=167 Identities=22% Similarity=0.421 Sum_probs=148.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
.-..+||+++|+.|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..+...+++++|++
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v 88 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 88 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence 346789999999999999999999999999889999876654 4577888999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEE
Q 027382 92 MLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQRENL-FFMET 157 (224)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 157 (224)
|+|||++++++++.+ ..|+..+.+..+ +.|+++|+||+|+.+ .+.++.++++++++.+++ .|++|
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~Et 167 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLEC 167 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEc
Confidence 999999999999985 789998887653 789999999999964 256888999999999998 69999
Q ss_pred cCCCCC-CHHHHHHHHHHHHHHHH
Q 027382 158 SALEAT-NVETAFLTVLTEIYRII 180 (224)
Q Consensus 158 s~~~~~-~v~~~~~~i~~~i~~~~ 180 (224)
||++|. |++++|..++..+++..
T Consensus 168 SAktg~~~V~e~F~~~~~~~~~~~ 191 (232)
T cd04174 168 SAFTSEKSIHSIFRSASLLCLNKL 191 (232)
T ss_pred cCCcCCcCHHHHHHHHHHHHHHhc
Confidence 999998 89999999998877543
No 25
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.1e-34 Score=217.86 Aligned_cols=166 Identities=33% Similarity=0.543 Sum_probs=145.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 96 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 96 (224)
||+++|.+|||||||+++|.++.+...+.++.+..+ .....+++..+.+.+|||||++.+..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999888777778766444 3445577888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 97 MTKRQSFDHMARWLDELRGHAD---KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
++++++++.+..|+..+.+... .+.|+++|+||+|+.+.+.+...+..+++..++++++++||++|.|++++|.+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988866542 4789999999999977677888888899999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 027382 174 TEIYRIISKK 183 (224)
Q Consensus 174 ~~i~~~~~~~ 183 (224)
+.+.+.....
T Consensus 160 ~~l~~~~~~~ 169 (190)
T cd04144 160 RALRQQRQGG 169 (190)
T ss_pred HHHHHhhccc
Confidence 8887665554
No 26
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.5e-35 Score=204.54 Aligned_cols=178 Identities=41% Similarity=0.748 Sum_probs=164.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI-DHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
..+.++++|+|++-+|||+|++.+..+.++.-++||+|.++....+.+ .+..+++++|||+|++.++++...|+++.-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 567899999999999999999999999999999999999999888877 6788999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA 168 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 168 (224)
+++|||+++.++|+.+..|+........ ..+.+++|++|+|+...++++.++++.++..+++.|+++|+++|.||++.
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 9999999999999999999988776554 44557899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCcCc
Q 027382 169 FLTVLTEIYRIISKKSLTAND 189 (224)
Q Consensus 169 ~~~i~~~i~~~~~~~~~~~~~ 189 (224)
|..+.+.+...+.+.....++
T Consensus 165 F~mlaqeIf~~i~qGeik~ed 185 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQGEIKLED 185 (213)
T ss_pred HHHHHHHHHHHHhcCceeeee
Confidence 999999999999886665554
No 27
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5e-34 Score=214.55 Aligned_cols=164 Identities=48% Similarity=0.775 Sum_probs=147.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
+||+++|++|||||||++++.+..+.. .+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988754 5667777777776777888899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382 95 YDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
||++++++++.+..|+..+.+....++|+++|+||+|+...+.+..++++.++..++++|+++||++|.|++++|.++.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999988876668999999999999766677778899999999999999999999999999999998
Q ss_pred HHHHH
Q 027382 175 EIYRI 179 (224)
Q Consensus 175 ~i~~~ 179 (224)
.+.+.
T Consensus 161 ~~~~~ 165 (191)
T cd04112 161 ELKHR 165 (191)
T ss_pred HHHHh
Confidence 88655
No 28
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=5.1e-34 Score=210.10 Aligned_cols=165 Identities=47% Similarity=0.859 Sum_probs=151.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
..+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 56999999999999999999999999988889998888877778888888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
|||+++++++..+..|+..+.+....+.|+++++||+|+.+.+.+..+++..++...+.+++++||++|.|++++|.++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999998876666899999999999987677788889999999999999999999999999999999
Q ss_pred HHHHH
Q 027382 174 TEIYR 178 (224)
Q Consensus 174 ~~i~~ 178 (224)
+.+..
T Consensus 162 ~~~~~ 166 (167)
T cd01867 162 KDIKK 166 (167)
T ss_pred HHHHh
Confidence 88754
No 29
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2.8e-34 Score=213.70 Aligned_cols=164 Identities=26% Similarity=0.497 Sum_probs=146.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
....+||+++|++|||||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 35678999999999999999999999999888888877555 35677888999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEE
Q 027382 92 MLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQRENL-FFMET 157 (224)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 157 (224)
|+|||++++++++.+ ..|+..+.+.. ++.|+++|+||.|+.+ .+.++.++++++++++++ +|++|
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 78999988765 4799999999999864 245889999999999996 89999
Q ss_pred cCCCCCC-HHHHHHHHHHHHH
Q 027382 158 SALEATN-VETAFLTVLTEIY 177 (224)
Q Consensus 158 s~~~~~~-v~~~~~~i~~~i~ 177 (224)
||++|.| ++++|..++..++
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999987543
No 30
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.1e-33 Score=215.80 Aligned_cols=164 Identities=22% Similarity=0.434 Sum_probs=142.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+|+|++|||||||+++|..+.++..+.||.+..+. ..+.+++..+.+.+|||+|++.+..+++.+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999998889999876554 56678889999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 027382 96 DMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMETSALE 161 (224)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 161 (224)
|++++++++.+. .|...+.... .+.|++||+||+|+.+. ..++.+++..++++.++ +|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999995 5776665543 47999999999999542 13677889999999996 899999999
Q ss_pred CCC-HHHHHHHHHHHHHHHHh
Q 027382 162 ATN-VETAFLTVLTEIYRIIS 181 (224)
Q Consensus 162 ~~~-v~~~~~~i~~~i~~~~~ 181 (224)
+.+ |+++|..++...+....
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccC
Confidence 985 99999999987665443
No 31
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.5e-35 Score=203.57 Aligned_cols=180 Identities=34% Similarity=0.647 Sum_probs=166.0
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA 88 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 88 (224)
...+...+||+++|..-+|||||+-++..+.+......|.-..+..+.+.+.+....+++|||.|++.|.++-+.|+++.
T Consensus 7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS 86 (218)
T KOG0088|consen 7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS 86 (218)
T ss_pred ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence 34567899999999999999999999999999887777777788888888888899999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA 168 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 168 (224)
+++++|||++|++||+.++.|...++...+..+.+++|+||+|+++++.++.++++.++...++.|+++||+++.||.++
T Consensus 87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISEL 166 (218)
T ss_pred CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHH
Confidence 99999999999999999999999999888878999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCcC
Q 027382 169 FLTVLTEIYRIISKKSLTAN 188 (224)
Q Consensus 169 ~~~i~~~i~~~~~~~~~~~~ 188 (224)
|+.+...+.+..+..+....
T Consensus 167 Fe~Lt~~MiE~~s~~qr~~~ 186 (218)
T KOG0088|consen 167 FESLTAKMIEHSSQRQRTRS 186 (218)
T ss_pred HHHHHHHHHHHhhhcccccC
Confidence 99999999888766655443
No 32
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=7.8e-34 Score=210.01 Aligned_cols=165 Identities=32% Similarity=0.489 Sum_probs=147.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
.+||+++|.+|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999998877888876444 34567788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 95 YDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
||++++++++.+..|+..+.+.. ..++|+++|+||+|+.+.+.++.++..++++..+++|+++||++|.|++++|.+++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999988877653 35799999999999987777888899999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027382 174 TEIYRII 180 (224)
Q Consensus 174 ~~i~~~~ 180 (224)
..+.+..
T Consensus 161 ~~~~~~~ 167 (172)
T cd04141 161 REIRRKE 167 (172)
T ss_pred HHHHHhc
Confidence 8877643
No 33
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=5.8e-34 Score=210.79 Aligned_cols=159 Identities=33% Similarity=0.571 Sum_probs=143.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|+|||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999888999987655 455667888999999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCCCC----------CCCHHHHHHHHHHcCC-eEEEEcCCCCC
Q 027382 96 DMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGSLR----------AVPTEDAQEFAQRENL-FFMETSALEAT 163 (224)
Q Consensus 96 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 163 (224)
|++++++++.+ ..|+..+.+..+ +.|+++|+||+|+.+.+ .+..+++.++++.+++ +|++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 689999876654 79999999999996542 4788899999999998 59999999999
Q ss_pred CHHHHHHHHHHHH
Q 027382 164 NVETAFLTVLTEI 176 (224)
Q Consensus 164 ~v~~~~~~i~~~i 176 (224)
||+++|..++..+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999765
No 34
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=2.1e-33 Score=206.57 Aligned_cols=163 Identities=52% Similarity=0.863 Sum_probs=149.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
.+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999988888888888888878888888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382 95 YDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
||+++++++..+..|+..+.+....+.|+++++||.|+...+.+..+++..+++..+++++++||++|.|++++|..+.+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999988766557999999999999777778888899999999999999999999999999999988
Q ss_pred HHH
Q 027382 175 EIY 177 (224)
Q Consensus 175 ~i~ 177 (224)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 764
No 35
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.4e-33 Score=206.64 Aligned_cols=160 Identities=42% Similarity=0.735 Sum_probs=147.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888888888877777888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
|++++++++.+..|+..+......+.|+++|+||.|+.+.+.+..+++..+++..+++|+++||++|.|++++|.+|.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999998887665679999999999998777788889999999999999999999999999999999754
No 36
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=2.3e-33 Score=206.27 Aligned_cols=162 Identities=41% Similarity=0.753 Sum_probs=147.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888888887777777777788899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
|++++++++.+..|+..+.+......|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|+++...
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999877665679999999999998767777788889999999999999999999999999999876
Q ss_pred HH
Q 027382 176 IY 177 (224)
Q Consensus 176 i~ 177 (224)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 64
No 37
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2.1e-33 Score=209.25 Aligned_cols=167 Identities=38% Similarity=0.686 Sum_probs=149.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC----------CeEEEEEEEeCCChhhhhhhhH
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID----------HKTVKAQIWDTAGQERYRAVTS 82 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~D~~G~~~~~~~~~ 82 (224)
++.+||+++|++|||||||++++.++.+...+.++.+.++....+.+. +..+.+.+||+||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 356999999999999999999999999988888888877766665553 4568999999999999999999
Q ss_pred hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCC
Q 027382 83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALE 161 (224)
Q Consensus 83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 161 (224)
.+++++|++++|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++.+++++.+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999999999887654 24789999999999987777888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027382 162 ATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 162 ~~~v~~~~~~i~~~i~~~ 179 (224)
|.|++++|+.+++.+.++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999887654
No 38
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=211.23 Aligned_cols=167 Identities=37% Similarity=0.593 Sum_probs=147.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
..+||+++|.+|||||||++++.++.+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 358999999999999999999999988777878766555 4566778888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 172 (224)
|||++++++++.+..|+..+.+... .+.|+++|+||.|+.+.+.+...++..++..++.+++++||++|.|+.++|.++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999999988876543 578999999999997666777778888988888999999999999999999999
Q ss_pred HHHHHHHHh
Q 027382 173 LTEIYRIIS 181 (224)
Q Consensus 173 ~~~i~~~~~ 181 (224)
++.+.+...
T Consensus 163 ~~~l~~~~~ 171 (189)
T PTZ00369 163 VREIRKYLK 171 (189)
T ss_pred HHHHHHHhh
Confidence 988865544
No 39
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.9e-33 Score=205.93 Aligned_cols=161 Identities=38% Similarity=0.708 Sum_probs=153.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 96 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 96 (224)
||+++|++|||||||+++|.++.++..+.++.+.+.....+..++..+.+.+||++|++.+..+...+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 97 MTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
++++++++.+..|+..+......+.|+++++||.|+.+.+.++.+++++++++++.+|+++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999988876799999999999987788999999999999999999999999999999999999887
Q ss_pred H
Q 027382 177 Y 177 (224)
Q Consensus 177 ~ 177 (224)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 40
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.3e-33 Score=209.65 Aligned_cols=161 Identities=24% Similarity=0.487 Sum_probs=143.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
.+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+...+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 37999999999999999999999999888888876555 35677888999999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEcCC
Q 027382 95 YDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQRENL-FFMETSAL 160 (224)
Q Consensus 95 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~ 160 (224)
||++++++++.+ ..|+..+.+..+ +.|+++|+||.|+.+ .+.++.++++++++++++ +|+++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 789998887654 799999999999954 245888999999999997 79999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q 027382 161 EATN-VETAFLTVLTEIY 177 (224)
Q Consensus 161 ~~~~-v~~~~~~i~~~i~ 177 (224)
+|+| ++++|..++...+
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999988543
No 41
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=3.8e-33 Score=204.99 Aligned_cols=163 Identities=71% Similarity=1.132 Sum_probs=149.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
+.+||+++|.+|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 46899999999999999999999999888888888888888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
|||++++.++..+..|+..+.+....+.|+++|+||.|+...+....++...++...+++++++||++|.|++++|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999998887766799999999999987677788889999998899999999999999999999998
Q ss_pred HHH
Q 027382 174 TEI 176 (224)
Q Consensus 174 ~~i 176 (224)
..+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 42
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=3.3e-33 Score=205.51 Aligned_cols=162 Identities=33% Similarity=0.642 Sum_probs=148.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888999888888888888889999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCC-----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHAD-----KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
|++++++++.+..|+..+.+... .+.|+++|+||+|+.+......++.+.++...+++++++||++|.|+.++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999998877653 4699999999999976566778888889998899999999999999999999
Q ss_pred HHHHHHH
Q 027382 171 TVLTEIY 177 (224)
Q Consensus 171 ~i~~~i~ 177 (224)
++++.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998775
No 43
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=6.8e-33 Score=204.31 Aligned_cols=166 Identities=52% Similarity=0.928 Sum_probs=151.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
++.+||+++|.+|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..+...+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 56799999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 172 (224)
+|||+++++++..+..|+..+.+...++.|+++|+||.|+.+...+..++++.++...+++++++|+++++|++++|..+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887665689999999999997666778888999999999999999999999999999999
Q ss_pred HHHHHH
Q 027382 173 LTEIYR 178 (224)
Q Consensus 173 ~~~i~~ 178 (224)
.+.+++
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 887754
No 44
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.2e-33 Score=208.89 Aligned_cols=166 Identities=28% Similarity=0.459 Sum_probs=141.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
+||+|+|++|||||||+++|.++.+...+.++.+..+.. .+... +..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999887887776655543 34444 6788999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCCC----CCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHH
Q 027382 95 YDMTKRQSFDHMAR-WLDELRGHADKNIVIMLIGNKCDLGSL----RAVPTEDAQEFAQRENL-FFMETSALEATNVETA 168 (224)
Q Consensus 95 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~ 168 (224)
||++++++++.+.. |+..+.... .+.|+++|+||.|+... +.+..+++++++..+++ +++++||++|.|+.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 99999999999964 887776543 47999999999998543 24667889999999998 8999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 027382 169 FLTVLTEIYRIISKK 183 (224)
Q Consensus 169 ~~~i~~~i~~~~~~~ 183 (224)
|..+++.+.......
T Consensus 159 f~~l~~~~~~~~~~~ 173 (187)
T cd04132 159 FDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999998887655444
No 45
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=4.8e-33 Score=209.12 Aligned_cols=161 Identities=27% Similarity=0.509 Sum_probs=141.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
.+||+++|+.|||||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999999888888877554 34456788899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEcCC
Q 027382 95 YDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQREN-LFFMETSAL 160 (224)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~ 160 (224)
||++++++++.+. .|+..+.+.. .++|+++|+||.|+.+. +.+..+++++++++++ .+|+++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999997 5887776544 47999999999999653 2356778999999998 589999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027382 161 EATNVETAFLTVLTEIY 177 (224)
Q Consensus 161 ~~~~v~~~~~~i~~~i~ 177 (224)
+|.|++++|..+++.+.
T Consensus 161 ~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 161 NQDGVKEVFAEAVRAVL 177 (191)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998774
No 46
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.1e-32 Score=207.55 Aligned_cols=164 Identities=37% Similarity=0.613 Sum_probs=144.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
+||+|+|++|||||||+++|.++.+.. .+.++.+.++....+.+++..+.+.+||++|++.+..++..++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988864 5777877777777788888899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC----CCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382 95 YDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL----RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
||++++++++.+..|+..+.... .+.|+++|+||+|+.+. +.+..+++.+++...+++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999887653 37999999999998532 34556778888888899999999999999999999
Q ss_pred HHHHHHHHHH
Q 027382 171 TVLTEIYRII 180 (224)
Q Consensus 171 ~i~~~i~~~~ 180 (224)
.+.+.+.+..
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9998887544
No 47
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=8.1e-33 Score=206.17 Aligned_cols=162 Identities=28% Similarity=0.531 Sum_probs=142.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|+.|||||||++++.++.+...+.+|.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998889999988888788888888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC-----CCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL-----RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
|++++++++.+..|+..+.+......| ++|+||+|+... .....++++++++..+++++++||++|.|++++|.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999988876555566 678999998421 11224567788888899999999999999999999
Q ss_pred HHHHHHHH
Q 027382 171 TVLTEIYR 178 (224)
Q Consensus 171 ~i~~~i~~ 178 (224)
++...+.+
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99988764
No 48
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.5e-32 Score=200.69 Aligned_cols=162 Identities=49% Similarity=0.844 Sum_probs=146.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
..+||+++|++|+|||||++++..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988887788887777777778788888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVETAFLTV 172 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~i 172 (224)
|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.++++..+. .++++||++|.|++++|+.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999998876556899999999999987677778889999998886 68999999999999999998
Q ss_pred HHH
Q 027382 173 LTE 175 (224)
Q Consensus 173 ~~~ 175 (224)
.+.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 864
No 49
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=2.3e-32 Score=199.98 Aligned_cols=160 Identities=54% Similarity=0.873 Sum_probs=146.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888787787777888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
|+++++++..+..|+..+......+.|+++++||.|+...+.+..+++..+++..++.++++|++++.|+.++|.++...
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877666789999999999998767778889999999999999999999999999999998864
No 50
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.6e-32 Score=201.05 Aligned_cols=160 Identities=33% Similarity=0.553 Sum_probs=141.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|||||||++++..+.+...+.++.+ ......+.+++..+.+.+||+||++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888777777765 344556677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
|++++++++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..++...+++.++.+++++||++|.|+.++|.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999988876543 57999999999999766667777888888888899999999999999999999986
Q ss_pred HH
Q 027382 175 EI 176 (224)
Q Consensus 175 ~i 176 (224)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 51
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.6e-32 Score=203.51 Aligned_cols=159 Identities=25% Similarity=0.456 Sum_probs=139.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
.+||+++|++|||||||++++.++.+...+.|+.+..+. ..+.+++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999998888888765554 4456778889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEcCC
Q 027382 95 YDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQREN-LFFMETSAL 160 (224)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~ 160 (224)
||++++++++.+. .|+..+.... .++|+++|+||.|+.+. +.+..+++++++++.+ ..|+++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999997 4888887654 47999999999998543 4567788899998887 689999999
Q ss_pred CCCCHHHHHHHHHHH
Q 027382 161 EATNVETAFLTVLTE 175 (224)
Q Consensus 161 ~~~~v~~~~~~i~~~ 175 (224)
+|.|++++|+.++..
T Consensus 159 tg~~v~~~f~~~~~~ 173 (175)
T cd01874 159 TQKGLKNVFDEAILA 173 (175)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998864
No 52
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=2.6e-32 Score=209.10 Aligned_cols=164 Identities=30% Similarity=0.536 Sum_probs=146.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
...+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 77899999999999999999999999988888999888888777777788899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 172 (224)
+|||++++++++.+..|+..+.+.. .+.|+++|+||+|+.. +.+..+++ ++++..+++|+++||++|.|+.++|.++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999988765 4799999999999964 33445555 7788888999999999999999999999
Q ss_pred HHHHHHH
Q 027382 173 LTEIYRI 179 (224)
Q Consensus 173 ~~~i~~~ 179 (224)
+..+.+.
T Consensus 168 ~~~~~~~ 174 (219)
T PLN03071 168 ARKLAGD 174 (219)
T ss_pred HHHHHcC
Confidence 9888644
No 53
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=2.2e-32 Score=200.75 Aligned_cols=160 Identities=31% Similarity=0.544 Sum_probs=141.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998888777777766544 356677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
|++++++++.+.+|+..+.+.. ..+.|+++++||+|+.+...+..+++.++++..+++++++||++|.|++++|.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999998887643 357999999999999876667777888899888999999999999999999999987
Q ss_pred HH
Q 027382 175 EI 176 (224)
Q Consensus 175 ~i 176 (224)
.+
T Consensus 161 ~l 162 (164)
T cd04175 161 QI 162 (164)
T ss_pred Hh
Confidence 65
No 54
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=5.6e-32 Score=198.34 Aligned_cols=163 Identities=59% Similarity=0.940 Sum_probs=148.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999888788888888887778888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
|++++++++.+..|+..+......+.|+++++||+|+.....+..+.++++++.++++++++|++++.|++++|+.+.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999998887665689999999999997666777888999999999999999999999999999999987
Q ss_pred HHH
Q 027382 176 IYR 178 (224)
Q Consensus 176 i~~ 178 (224)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
No 55
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=8.6e-32 Score=198.70 Aligned_cols=162 Identities=35% Similarity=0.641 Sum_probs=143.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 96 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 96 (224)
||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988899998888877778888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 97 MTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRA--VPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
+++++++..+..|+..+.+.. +...|+++|+||.|+.+... ...+++..++.+++.+++++||++|.|++++|+.++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999998876543 34678999999999965433 345667788888889999999999999999999999
Q ss_pred HHHHH
Q 027382 174 TEIYR 178 (224)
Q Consensus 174 ~~i~~ 178 (224)
..+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 87754
No 56
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=6.3e-32 Score=197.79 Aligned_cols=158 Identities=35% Similarity=0.642 Sum_probs=142.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC--CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID--HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
+||+++|.+|+|||||++++.++.+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998888888888777766666666 778999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
|||++++++++.+..|+..+.... .++|+++|+||.|+.....+..+++.++++..+++++++|+++|.|++++|.++.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999998887654 3799999999999977677788889999999999999999999999999999886
Q ss_pred H
Q 027382 174 T 174 (224)
Q Consensus 174 ~ 174 (224)
.
T Consensus 160 ~ 160 (162)
T cd04106 160 E 160 (162)
T ss_pred H
Confidence 4
No 57
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-32 Score=184.00 Aligned_cols=179 Identities=49% Similarity=0.842 Sum_probs=169.2
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
++.+.+|-+++|+-|+|||.|++.+....+...-.+++|..+....+.+.+..+.+++||+.|+++++...+.+++.+-+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 46688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
.++|||++.+.++..+..|+...+...+++..+++++||.|++..+.+..+++++|+.++++.|.++|+++|.|+++.|-
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCcCc
Q 027382 171 TVLTEIYRIISKKSLTAND 189 (224)
Q Consensus 171 ~i~~~i~~~~~~~~~~~~~ 189 (224)
.....+++..+......+-
T Consensus 167 e~akkiyqniqdgsldlna 185 (215)
T KOG0097|consen 167 ETAKKIYQNIQDGSLDLNA 185 (215)
T ss_pred HHHHHHHHhhhcCcccccc
Confidence 9999999988887655543
No 58
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=1.2e-31 Score=197.94 Aligned_cols=163 Identities=39% Similarity=0.653 Sum_probs=144.9
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
.+..+||+++|++|||||||++++.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 35679999999999999999999999998887888878777777788889999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcC----CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHA----DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVE 166 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~ 166 (224)
++|||++++++++.+..|+..+.+.. ..++|+++++||+|+. .+.+..+++++++.+++. +++++||++|.|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 99999999999999999988776543 2468999999999996 356778889999998884 79999999999999
Q ss_pred HHHHHHHHH
Q 027382 167 TAFLTVLTE 175 (224)
Q Consensus 167 ~~~~~i~~~ 175 (224)
++|..+++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999998864
No 59
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.3e-31 Score=197.86 Aligned_cols=162 Identities=41% Similarity=0.761 Sum_probs=145.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-hhhHhHhcCCCEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR-AVTSAYYRGAVGAML 93 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-~~~~~~~~~~d~vi~ 93 (224)
.+||+++|++|||||||+++++...+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999998887888888888887888888889999999999999886 578889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCC---CCCHHHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALE---ATNVETAF 169 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~v~~~~ 169 (224)
|||+++++++..+..|+..+.... ..++|+++|+||+|+...+.+..+++.++++..+++|+++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999998887654 35799999999999987777888889999999999999999999 89999999
Q ss_pred HHHHHHH
Q 027382 170 LTVLTEI 176 (224)
Q Consensus 170 ~~i~~~i 176 (224)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9988655
No 60
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=2.2e-31 Score=195.10 Aligned_cols=162 Identities=51% Similarity=0.854 Sum_probs=147.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
.+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998777778878778778888888999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382 95 YDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
+|+++++++..+..|+..+........|+++++||+|+...+....++...++...+++++++|+++|.|+.++|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999988776568999999999999766677788899999999999999999999999999999987
Q ss_pred HH
Q 027382 175 EI 176 (224)
Q Consensus 175 ~i 176 (224)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 65
No 61
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.2e-31 Score=197.21 Aligned_cols=160 Identities=33% Similarity=0.603 Sum_probs=140.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988887778888887777777777788899999999999999888999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
|+++++++..+..|+..+.+... +.|+++|+||+|+.. .... .+..++++..+++++++||++|.|++++|++++..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999987765 799999999999963 3333 34556777778899999999999999999999988
Q ss_pred HHH
Q 027382 176 IYR 178 (224)
Q Consensus 176 i~~ 178 (224)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 754
No 62
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=1.1e-31 Score=198.94 Aligned_cols=158 Identities=28% Similarity=0.474 Sum_probs=138.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|.+|||||||+.++..+.+...+.++.+. .....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 69999999999999999999999988888888653 33445667888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 027382 96 DMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMETSALE 161 (224)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 161 (224)
|++++++++.+. .|+..+.... .+.|+++|+||+|+.+. +.+..+++.+++++++. +|+++||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999996 5888777654 47999999999999542 24778889999999985 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 027382 162 ATNVETAFLTVLTE 175 (224)
Q Consensus 162 ~~~v~~~~~~i~~~ 175 (224)
|.|++++|+.++..
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998753
No 63
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.7e-31 Score=195.46 Aligned_cols=160 Identities=32% Similarity=0.578 Sum_probs=139.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|.+|||||||++++.++.+.+.+.++.+.+.......+++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888777777666777667777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
|++++.+++.+..|+..+.+.. .+.|+++|+||+|+... ...+...++...+++++++||++|.|++++|+.++..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999887654 36899999999998531 2345567777788999999999999999999999987
Q ss_pred HHHH
Q 027382 176 IYRI 179 (224)
Q Consensus 176 i~~~ 179 (224)
+.++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 7653
No 64
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=2e-31 Score=194.98 Aligned_cols=160 Identities=41% Similarity=0.763 Sum_probs=145.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|||||||++++++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988888888788888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
|++++++++.+..|+..+......+.|+++++||+|+........++...+++..+++++++|++++.|++++|.++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998876655579999999999996656677888899998889999999999999999999998764
No 65
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.3e-31 Score=196.54 Aligned_cols=161 Identities=39% Similarity=0.627 Sum_probs=140.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|||||||++++.+..+...+.++.+ +.......+++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999888777777654 334456667788899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
|++++++++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|+++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999887765443 47899999999999776667778888899999999999999999999999999987
Q ss_pred HHH
Q 027382 175 EIY 177 (224)
Q Consensus 175 ~i~ 177 (224)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 654
No 66
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.2e-31 Score=196.64 Aligned_cols=161 Identities=30% Similarity=0.514 Sum_probs=141.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
.+||+++|.+|+|||||++++..+.+...+.++.+ .+....+.+++..+.+.+||+||++.+..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999988877777754 45556777788888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 95 YDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
||++++++++.+..|+..+.+... .+.|+++|+||+|+.+...+...+...++...+++++++||++|.|+.++|.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999888876543 5799999999999976566667778888888888999999999999999999988
Q ss_pred HHH
Q 027382 174 TEI 176 (224)
Q Consensus 174 ~~i 176 (224)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 643
No 67
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.4e-31 Score=196.81 Aligned_cols=158 Identities=31% Similarity=0.466 Sum_probs=138.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|||||||++++.++.+...+.++.+.++ ...+.++...+.+.+||+||++.+..++..+++.+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7899999999999999999999988777777765443 344556778899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHAD---KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 172 (224)
|++++++++.+..|+..+.+... .+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999887766432 579999999999997666777778888888888999999999999999999998
Q ss_pred HH
Q 027382 173 LT 174 (224)
Q Consensus 173 ~~ 174 (224)
+.
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 74
No 68
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=2.8e-31 Score=194.69 Aligned_cols=161 Identities=34% Similarity=0.535 Sum_probs=140.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
.+||+++|.+|+|||||++++++..+...+.++.+.. ......+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4899999999999999999999988776666765533 344566788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 95 YDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
||++++++++.+..|+..+.+.. ..+.|+++++||+|+.....+..++..++++..+++++++||++|.|++++|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998887653 35789999999999977666777788899998889999999999999999999998
Q ss_pred HHH
Q 027382 174 TEI 176 (224)
Q Consensus 174 ~~i 176 (224)
..+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 654
No 69
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.1e-30 Score=199.40 Aligned_cols=168 Identities=43% Similarity=0.707 Sum_probs=145.4
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
+....+||+|+|.+|||||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 455679999999999999999999998876 4566777777777777788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHH-HHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382 91 AMLVYDMTKRQSFDHMAR-WLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA 168 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 168 (224)
+++|||++++++++.+.. |...+.... ..+.|+++|+||+|+...+.+..++...++..++++|+++||+++.|++++
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l 168 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQC 168 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999976 555554332 246899999999999776777788888999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027382 169 FLTVLTEIYRI 179 (224)
Q Consensus 169 ~~~i~~~i~~~ 179 (224)
|.++...+.+.
T Consensus 169 ~~~l~~~~~~~ 179 (211)
T PLN03118 169 FEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHhh
Confidence 99999888664
No 70
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=3.8e-31 Score=193.38 Aligned_cols=159 Identities=35% Similarity=0.609 Sum_probs=138.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 6899999999999999999999988777777765443 455667788888999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
|++++++++.+..|+..+.+... .+.|+++|+||+|+.+ +.....++.++++..+++++++||++|.|++++|.++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999888876543 5789999999999965 455677888888888999999999999999999999886
Q ss_pred HH
Q 027382 175 EI 176 (224)
Q Consensus 175 ~i 176 (224)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 54
No 71
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-33 Score=194.32 Aligned_cols=179 Identities=36% Similarity=0.631 Sum_probs=162.8
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC---------CeEEEEEEEeCCChhhhhhhh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID---------HKTVKAQIWDTAGQERYRAVT 81 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~D~~G~~~~~~~~ 81 (224)
.+++.||.+.+|++|+|||||+.++..+.+......|+|+++..+.+-++ +..+.+++|||+|+++++++.
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 56788999999999999999999999999999999999999988877653 345889999999999999999
Q ss_pred HhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCC
Q 027382 82 SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSAL 160 (224)
Q Consensus 82 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (224)
..+++.|-+++++||+++..||-+++.|+..++.+.- .+.-+++++||+|+++.+.++.+++.+++.++++||+++||-
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 9999999999999999999999999999999987663 466699999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCcCc
Q 027382 161 EATNVETAFLTVLTEIYRIISKKSLTAND 189 (224)
Q Consensus 161 ~~~~v~~~~~~i~~~i~~~~~~~~~~~~~ 189 (224)
+|.|+.+..+.+++.+++++.+-.-+++-
T Consensus 165 tg~Nv~kave~LldlvM~Rie~~v~~s~~ 193 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVMKRIEQCVEKSEI 193 (219)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999988776544443
No 72
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.6e-31 Score=199.49 Aligned_cols=159 Identities=31% Similarity=0.528 Sum_probs=137.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 96 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 96 (224)
||+++|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||++|++.+..++..+++.+|++|+|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 7999999999999999999999988888888665543 455667788999999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcC-CeEEEEcCCCC
Q 027382 97 MTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSLR------------AVPTEDAQEFAQREN-LFFMETSALEA 162 (224)
Q Consensus 97 ~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~~~ 162 (224)
++++++++.+. .|+..+.... .+.|+++|+||+|+.+.+ .+..++..+++...+ ++|+++||++|
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 99999999886 5888887654 379999999999996533 345667788888877 68999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 027382 163 TNVETAFLTVLTEIY 177 (224)
Q Consensus 163 ~~v~~~~~~i~~~i~ 177 (224)
.|++++|.++.+.+.
T Consensus 160 ~~v~e~f~~l~~~~~ 174 (189)
T cd04134 160 RGVNEAFTEAARVAL 174 (189)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998775
No 73
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=1.1e-30 Score=190.96 Aligned_cols=161 Identities=40% Similarity=0.709 Sum_probs=143.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|.+|+|||||++++++..+...+.++.+.......+.+.+..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887766666666666666777778889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
|++++++++.+..|+..+......++|+++++||+|+...+.+..+++.+++...+.+++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999988887766679999999999998766777788888888899999999999999999999999876
Q ss_pred H
Q 027382 176 I 176 (224)
Q Consensus 176 i 176 (224)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 4
No 74
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=4.7e-31 Score=199.04 Aligned_cols=164 Identities=20% Similarity=0.263 Sum_probs=136.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhHhHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY--------RAVTSAYYRG 87 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~~~~ 87 (224)
+||+|+|.+|||||||++++.++.+...+.++.+.+.....+.+++..+.+.+|||||...+ .......++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999988888888776666666677888899999999995432 1123345789
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcC---CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEcCCCCC
Q 027382 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHA---DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-RENLFFMETSALEAT 163 (224)
Q Consensus 88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~ 163 (224)
+|++|+|||++++++++.+..|+..+.+.. ..++|+++|+||+|+...+.+..+++++++. ..+++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998877654 3579999999999997666667777777765 468999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027382 164 NVETAFLTVLTEIYRI 179 (224)
Q Consensus 164 ~v~~~~~~i~~~i~~~ 179 (224)
|++++|..++..++..
T Consensus 161 ~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 161 HILLLFKELLISATTR 176 (198)
T ss_pred CHHHHHHHHHHHhhcc
Confidence 9999999999877643
No 75
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=6.5e-31 Score=198.05 Aligned_cols=156 Identities=29% Similarity=0.552 Sum_probs=139.8
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCCh
Q 027382 21 IGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR 100 (224)
Q Consensus 21 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~ 100 (224)
+|.+|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888889988888888888888999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382 101 QSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 101 ~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~ 179 (224)
.++..+..|+..+.+.. .++|+++|+||+|+.. +.+..+. ..+++..++.|++|||++|.|+.++|.+++..+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998765 4799999999999864 3444443 467888899999999999999999999999888654
No 76
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=1.3e-30 Score=191.30 Aligned_cols=160 Identities=34% Similarity=0.596 Sum_probs=140.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC--CCCCCccCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN--EFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
+||+++|++|||||||++++.+. .+...+.++.+.++....+.+. +..+.+.+||+||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 5667788888877776666664 57799999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 172 (224)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+.+...+...+.+.+....+++++++||+++.|++++|+.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999998887664 468999999999997766677777778888888999999999999999999999
Q ss_pred HHHH
Q 027382 173 LTEI 176 (224)
Q Consensus 173 ~~~i 176 (224)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8764
No 77
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=5.7e-31 Score=194.19 Aligned_cols=163 Identities=21% Similarity=0.216 Sum_probs=141.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
++++||+++|.+|||||||+++++++.+. ..+.+|.+..+....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 57899999999999999999999999988 78888888777777777888888999999999999988999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVETAFL 170 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~ 170 (224)
++|||++++++++.+..|+..+... .+.|+++|+||+|+.+.......+.+++++.+++ .++++||+++.|++++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 9999999999999998988766432 3699999999999965454444556788888887 479999999999999999
Q ss_pred HHHHHHH
Q 027382 171 TVLTEIY 177 (224)
Q Consensus 171 ~i~~~i~ 177 (224)
.+.+.+.
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9988764
No 78
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.98 E-value=2.3e-30 Score=189.32 Aligned_cols=159 Identities=50% Similarity=0.859 Sum_probs=142.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777788787777777777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
|++++.+++.+..|+..+.+... .+.|+++++||+|+.. .....++..+++...+++++++|+++|.|++++|+.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 99999999999999998877653 6799999999999973 445677888999999999999999999999999999876
Q ss_pred H
Q 027382 175 E 175 (224)
Q Consensus 175 ~ 175 (224)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 4
No 79
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=4.8e-33 Score=187.77 Aligned_cols=169 Identities=43% Similarity=0.728 Sum_probs=154.6
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeC
Q 027382 19 VLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDM 97 (224)
Q Consensus 19 ~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 97 (224)
+++|++++|||.|+-++..+.+- .....++|+++..+.+++++..+.+++|||.|++++++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 37899999999999999887765 45678889999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382 98 TKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIY 177 (224)
Q Consensus 98 ~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~ 177 (224)
++..||++.+.|+..+.+.....+.+.+++||+|+..++.+..++.+++++.+++||+++||++|.|++-.|..|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999988778889999999999888999999999999999999999999999999999999998887
Q ss_pred HHHhcccCCc
Q 027382 178 RIISKKSLTA 187 (224)
Q Consensus 178 ~~~~~~~~~~ 187 (224)
+....-.+..
T Consensus 161 k~~~~~~~~~ 170 (192)
T KOG0083|consen 161 KLKMGAPPEG 170 (192)
T ss_pred HhccCCCCCC
Confidence 7655544433
No 80
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=8.4e-31 Score=194.12 Aligned_cols=158 Identities=29% Similarity=0.497 Sum_probs=137.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDM 97 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 97 (224)
|+|+|++|||||||++++.++.+...+.++.+.. ....+.+++..+.+.+|||||++.+..++..+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 5899999999999999999999888777775444 345566788889999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEcCCCCC
Q 027382 98 TKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMETSALEAT 163 (224)
Q Consensus 98 ~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 163 (224)
+++++++.+. .|+..+.... .+.|+++|+||+|+... ..+..+++.++++..++ .++++||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999986 4888887654 47999999999999642 23677888899999986 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027382 164 NVETAFLTVLTEIY 177 (224)
Q Consensus 164 ~v~~~~~~i~~~i~ 177 (224)
|++++|..+++.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 81
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=5e-30 Score=189.03 Aligned_cols=165 Identities=43% Similarity=0.788 Sum_probs=145.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
....++|+++|++|||||||++++..+.+...+.++.+.+.....+.+.+..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999998887777777777777777777888889999999999999999989999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT 171 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 171 (224)
++|||++++++++.+..|+..+......++|+++++||+|+.+.+.+..+..+.+.+....+++++|+++|.|++++|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999998887665567999999999999766777777778888877888999999999999999999
Q ss_pred HHHHH
Q 027382 172 VLTEI 176 (224)
Q Consensus 172 i~~~i 176 (224)
+...+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 98754
No 82
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.98 E-value=3.6e-30 Score=190.23 Aligned_cols=164 Identities=44% Similarity=0.720 Sum_probs=144.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887777788777777777778888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN-LFFMETSALEATNVETAFL 170 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~~~ 170 (224)
|++++++++.+..|...+..... .+.|+++|+||+|+...+....++.+.+++..+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999988888876654432 379999999999997556667788888888887 7899999999999999999
Q ss_pred HHHHHHHHH
Q 027382 171 TVLTEIYRI 179 (224)
Q Consensus 171 ~i~~~i~~~ 179 (224)
++.+.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999888765
No 83
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1.3e-30 Score=195.96 Aligned_cols=157 Identities=23% Similarity=0.394 Sum_probs=128.6
Q ss_pred eEEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCccCCcce-eeEEEE--------EEECCeEEEEEEEeCCChhhhhh
Q 027382 15 VFKVVLIGDSAVGKSQLLA-RFARNE-----FSVDSKATIGV-EFQTKT--------LSIDHKTVKAQIWDTAGQERYRA 79 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~G~~~~~~ 79 (224)
.+||+++|+.|||||||+. ++.++. +...+.||++. +.+... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 555443 34556777642 322222 24678899999999999875 3
Q ss_pred hhHhHhcCCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCC-------------------CCCCC
Q 027382 80 VTSAYYRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGS-------------------LRAVP 139 (224)
Q Consensus 80 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~-------------------~~~~~ 139 (224)
....+++++|++|+|||++++++++.+. .|+..+.... .+.|+++|+||+|+.+ .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566889999999999999999999997 5988887655 3789999999999864 36788
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382 140 TEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
.+++++++++++++|++|||++|.|++++|..+++
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 89999999999999999999999999999999875
No 84
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.98 E-value=2.7e-30 Score=200.65 Aligned_cols=160 Identities=25% Similarity=0.444 Sum_probs=139.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|.+|||||||+++++++.+...+.++.+ ++....+.+++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998877878765 555566778888999999999999999888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhc---------CCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEcCCCCCCH
Q 027382 96 DMTKRQSFDHMARWLDELRGH---------ADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-ENLFFMETSALEATNV 165 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v 165 (224)
|++++++++.+..|+..+.+. ...+.|+++|+||+|+...+.+..+++.+++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998887653 224799999999999976667778888888764 4678999999999999
Q ss_pred HHHHHHHHHHH
Q 027382 166 ETAFLTVLTEI 176 (224)
Q Consensus 166 ~~~~~~i~~~i 176 (224)
+++|.+|+...
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 85
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=3e-30 Score=191.05 Aligned_cols=157 Identities=28% Similarity=0.518 Sum_probs=136.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|+|||||++++.++.+...+.++. .+.....+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988877777774 4555566778888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 027382 96 DMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQRENL-FFMETSALE 161 (224)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~ 161 (224)
|++++++++.+. .|+..+.... .+.|+++++||.|+.. .+.+..+++.+++++.+. +++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999985 5888777543 3699999999999853 356778889999999987 899999999
Q ss_pred CCCHHHHHHHHHH
Q 027382 162 ATNVETAFLTVLT 174 (224)
Q Consensus 162 ~~~v~~~~~~i~~ 174 (224)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998763
No 86
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=6e-30 Score=186.00 Aligned_cols=158 Identities=56% Similarity=0.928 Sum_probs=144.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|||||||++++.+..+...+.++.+.++........+..+.+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
|+++++++..+..|+..+........|+++++||+|+........+++++++...+.+++++|++++.|++++|.++.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999998887656799999999999974566778889999999899999999999999999999876
No 87
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=1.7e-30 Score=190.87 Aligned_cols=160 Identities=33% Similarity=0.502 Sum_probs=136.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-hhhhhHhHhcCCCEEEEEE
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-YRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d~vi~v~ 95 (224)
||+++|++|||||||+++++.+.+...+.++.+.. ......+++..+.+.+||+||+.. .......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 58999999999999999999887766666664333 345566788889999999999885 3455778899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCC-CCHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHA--DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEA-TNVETAFLTV 172 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~v~~~~~~i 172 (224)
|++++++++.+..|+..+.+.. ..+.|+++|+||+|+...+.+..+++..+++..+.+|+++|++++ .|++++|..+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988887654 357999999999999766777788889999999999999999999 5999999999
Q ss_pred HHHHH
Q 027382 173 LTEIY 177 (224)
Q Consensus 173 ~~~i~ 177 (224)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 87664
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=5.2e-30 Score=196.59 Aligned_cols=163 Identities=26% Similarity=0.355 Sum_probs=139.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhc-CCCEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYR-GAVGAML 93 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~-~~d~vi~ 93 (224)
+||+++|++|||||||++++..+.+. ..+.++.+.++....+.+++..+.+.+||+||++ ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999988776 5666665556777778888889999999999987 233455666 9999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 172 (224)
|||++++.+++.+..|+..+.+... .+.|+++|+||+|+...+.+..++..+++...+++++++||+++.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988876542 579999999999997767777788888998889999999999999999999999
Q ss_pred HHHHHHHH
Q 027382 173 LTEIYRII 180 (224)
Q Consensus 173 ~~~i~~~~ 180 (224)
+..+....
T Consensus 159 ~~~~~~~~ 166 (221)
T cd04148 159 VRQIRLRR 166 (221)
T ss_pred HHHHHhhh
Confidence 98876433
No 89
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=6.1e-30 Score=188.54 Aligned_cols=161 Identities=32% Similarity=0.524 Sum_probs=141.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|.+|||||||++++.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 689999999999999999999998877777776544 3566677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEcCCCCCCHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN-LFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
|++++++++.+..|...+.+.. ..+.|+++++||.|+.+.+....++...+++..+ ++++++||+++.|++++|.+++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988887643 3579999999999997767777788888888887 7899999999999999999998
Q ss_pred HHHH
Q 027382 174 TEIY 177 (224)
Q Consensus 174 ~~i~ 177 (224)
..++
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 7664
No 90
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=3.8e-30 Score=187.59 Aligned_cols=153 Identities=20% Similarity=0.337 Sum_probs=129.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|+.|||||||+.+++.+.+...+.++ +..+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999998876665554 3333 45677888889999999999864 34678899999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLG--SLRAVPTEDAQEFAQRE-NLFFMETSALEATNVETAFLT 171 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~~~~ 171 (224)
|++++++++.+..|+..+..... .+.|+++|+||.|+. ..+.+..++++++++.. ++.|++|||++|.|++++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999998877653 578999999999984 34677888888999876 489999999999999999999
Q ss_pred HHHH
Q 027382 172 VLTE 175 (224)
Q Consensus 172 i~~~ 175 (224)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8754
No 91
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=9.6e-30 Score=188.43 Aligned_cols=159 Identities=27% Similarity=0.462 Sum_probs=136.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|+|||||++++..+.+...+.++.+ ......+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988777777654 333445667888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 027382 96 DMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMETSALE 161 (224)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 161 (224)
|++++++++.+. .|+..+... ..+.|+++++||+|+.+. +.++.+++..+++..+. +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999886 577777655 458999999999998542 35677888999998886 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027382 162 ATNVETAFLTVLTEI 176 (224)
Q Consensus 162 ~~~v~~~~~~i~~~i 176 (224)
|.|++++|+.++..+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=3.9e-29 Score=183.16 Aligned_cols=161 Identities=37% Similarity=0.584 Sum_probs=140.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|.+|||||||++++....+...+.++.+.. ......+++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999988877777765433 3455567888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
|++++.++..+..|+..+.+... .+.|+++|+||+|+.+.......+...++..++++++++|+++|.|++++|+.+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999888877643 57999999999999764556677788888888899999999999999999999987
Q ss_pred HHH
Q 027382 175 EIY 177 (224)
Q Consensus 175 ~i~ 177 (224)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 765
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=5.2e-29 Score=181.69 Aligned_cols=158 Identities=35% Similarity=0.585 Sum_probs=140.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 96 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 96 (224)
||+++|++|||||||++++++..+...+.++.+ +.........+..+.+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999999887777777655 5555666677778999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382 97 MTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
++++++++.+..|+..+.+... ...|+++++||+|+........+++.+++...+.+++++|++++.|++++|++|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888877654 579999999999998766677888999999988999999999999999999999865
No 94
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=3.9e-29 Score=186.24 Aligned_cols=159 Identities=19% Similarity=0.353 Sum_probs=126.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
+..+||+++|.++||||||++++..+.+. .+.+|.+.+.. . ++...+.+++||+||++.++.+|..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 44589999999999999999999877664 45677665543 2 3345688999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-----CeEEEEcCCCCCCHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN-----LFFMETSALEATNVE 166 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~ 166 (224)
+|||++++++++.+..++..+.... ..+.|+++++||.|+++. ...+++.+...... ..++++||++|+|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 9999999999999888777665432 247999999999999753 34445444433222 246689999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 167 TAFLTVLTEIYR 178 (224)
Q Consensus 167 ~~~~~i~~~i~~ 178 (224)
++|++|.+.+.+
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999887754
No 95
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=5.6e-29 Score=184.55 Aligned_cols=167 Identities=22% Similarity=0.385 Sum_probs=127.8
Q ss_pred CCCcccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027382 1 MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV 80 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 80 (224)
|.+..+.+.. +..+||+++|.+|||||||++++..+.+. .+.+|.+..+.. .. ...+.+.+||+||++.+..+
T Consensus 1 ~~~~~~~~~~--~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~--~~~~~l~l~D~~G~~~~~~~ 73 (175)
T smart00177 1 MGKLFSKLFG--NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VT--YKNISFTVWDVGGQDKIRPL 73 (175)
T ss_pred CchhhhhhcC--CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EE--ECCEEEEEEECCCChhhHHH
Confidence 4455443433 33589999999999999999999877663 466776655432 22 35688999999999999999
Q ss_pred hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeE
Q 027382 81 TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-----ENLFF 154 (224)
Q Consensus 81 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~ 154 (224)
+..+++++|++|+|||++++++++.+..|+..+.+.. ..+.|+++|+||.|+.+. ...+++.+.... ..+.+
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~ 151 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYI 151 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEE
Confidence 9999999999999999999999999998887765432 247899999999999642 233444433322 12347
Q ss_pred EEEcCCCCCCHHHHHHHHHHHH
Q 027382 155 METSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 155 ~~~s~~~~~~v~~~~~~i~~~i 176 (224)
+++||++|.|+.++|++|.+.+
T Consensus 152 ~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 152 QPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987664
No 96
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=2.4e-28 Score=181.94 Aligned_cols=164 Identities=34% Similarity=0.515 Sum_probs=140.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
.||+++|.+|+|||||++++.+..+...+.++.+..+ .....+.+..+.+.+||+||++.+...+..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999887666666654433 345566777889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
|+++.++++.+..|+..+.+.. ..+.|+++++||+|+...+.+..++...+++..+.+++++|++++.|+.++|.++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999887776654 357899999999999766666777788888888899999999999999999999998
Q ss_pred HHHHHH
Q 027382 175 EIYRII 180 (224)
Q Consensus 175 ~i~~~~ 180 (224)
.+....
T Consensus 161 ~~~~~~ 166 (180)
T cd04137 161 EIEKVE 166 (180)
T ss_pred HHHHhc
Confidence 876443
No 97
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=4.2e-29 Score=184.02 Aligned_cols=154 Identities=22% Similarity=0.401 Sum_probs=124.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
..+||+++|++|||||||+++|..+.+. .+.++.+.++.. + ....+.+.+||+||++.+..++..+++++|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--V--TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEE--E--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999877664 456666655432 2 2356889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEcCCCCCCHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-----ENLFFMETSALEATNVET 167 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v~~ 167 (224)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .+..+++++++.. ...+++++||++|.|+++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 999999999999988876665433 25789999999999864 3456777776532 224689999999999999
Q ss_pred HHHHHHH
Q 027382 168 AFLTVLT 174 (224)
Q Consensus 168 ~~~~i~~ 174 (224)
+|++|.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 98
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=1.3e-28 Score=183.89 Aligned_cols=166 Identities=19% Similarity=0.353 Sum_probs=132.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI-DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
.+||+++|++|||||||++++..+.+.. +.++.+.+.....+.. ++..+.+.+||+||++.+..++..+++++|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 5899999999999999999999887654 3566666665555444 4467899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH------cCCeEEEEcCCCCCCHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR------ENLFFMETSALEATNVE 166 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~v~ 166 (224)
|||+++++++..+..|+..+.... ..+.|+++++||+|+.+ ....+++..+... .+.+++++||++|.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 999999999998888887766543 24799999999999863 2344555555431 12468899999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 027382 167 TAFLTVLTEIYRIISKK 183 (224)
Q Consensus 167 ~~~~~i~~~i~~~~~~~ 183 (224)
++|++|++.+.+..+..
T Consensus 160 ~l~~~l~~~l~~~~~~~ 176 (183)
T cd04152 160 EGLEKLYEMILKRRKML 176 (183)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999998886655443
No 99
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=1.1e-29 Score=186.38 Aligned_cols=153 Identities=18% Similarity=0.310 Sum_probs=126.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 96 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 96 (224)
.|+++|++|||||||++++.+..+...+.++.+... ..+++..+.+.+||+||++.+..++..+++++|++++|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999999887777778876543 2345567899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCH----HHHHHHHHHcCCeEEEEcCCC------CCCHH
Q 027382 97 MTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPT----EDAQEFAQRENLFFMETSALE------ATNVE 166 (224)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~------~~~v~ 166 (224)
.+++.++..+..|+..+.... .++|+++|+||.|+...+.+.. .++..++++.+++++++||++ ++|++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999999888776543 4799999999999976543321 124556666778899998888 99999
Q ss_pred HHHHHHHH
Q 027382 167 TAFLTVLT 174 (224)
Q Consensus 167 ~~~~~i~~ 174 (224)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998874
No 100
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=6.1e-29 Score=185.39 Aligned_cols=160 Identities=23% Similarity=0.392 Sum_probs=124.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
..+||+++|++|||||||++++..+.+.. +.+|.+.++. .+ ....+.+.+||+||++.+..++..+++++|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TV--EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EE--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999998776643 5667665543 22 2356889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEcCCCCCCHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGH-ADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-----ENLFFMETSALEATNVET 167 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v~~ 167 (224)
|||+++++++..+..++..+... ...+.|+++|+||.|+.+ .....++...... ..+.++++||++|.|+++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 99999999999988877666432 224689999999999864 2233343332221 123567999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027382 168 AFLTVLTEIYRII 180 (224)
Q Consensus 168 ~~~~i~~~i~~~~ 180 (224)
+|++|.+.+.+.+
T Consensus 169 ~~~~l~~~i~~~~ 181 (182)
T PTZ00133 169 GLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998887654
No 101
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=9.8e-29 Score=184.89 Aligned_cols=164 Identities=35% Similarity=0.534 Sum_probs=152.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
..+||+++|.+|+|||+|..++.+..+...|.|+.+ +.+.+.+.+++..+.+.++||+|++++..+...++.++|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999976 7777888899999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 172 (224)
||+++++.||+.+..++..+.+... ..+|+++|+||+|+...+.+..++++.++..++++|+++||+.+.+++++|..+
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999988855443 568999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 027382 173 LTEIYR 178 (224)
Q Consensus 173 ~~~i~~ 178 (224)
++.+..
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 988866
No 102
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=1e-28 Score=182.14 Aligned_cols=155 Identities=21% Similarity=0.407 Sum_probs=126.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 96 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 96 (224)
||+++|.+|||||||++++.+..+. .+.+|.+.... . +....+.+.+||+||++.+...+..+++.+|+++||||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~--~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--T--VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--E--EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 6899999999999999999988664 36666655443 2 33356889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC------CeEEEEcCCCCCCHHHHH
Q 027382 97 MTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN------LFFMETSALEATNVETAF 169 (224)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~v~~~~ 169 (224)
++++++++.+..|+..+.+... .+.|+++++||.|+.+ .+..+++++++...+ +.++++||++|.|+.++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 9999999999999888765432 4689999999999964 356677777664322 258899999999999999
Q ss_pred HHHHHHHHH
Q 027382 170 LTVLTEIYR 178 (224)
Q Consensus 170 ~~i~~~i~~ 178 (224)
++|.+.+..
T Consensus 154 ~~l~~~~~~ 162 (169)
T cd04158 154 DWLSRQLVA 162 (169)
T ss_pred HHHHHHHhh
Confidence 999876644
No 103
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=3.1e-28 Score=184.03 Aligned_cols=160 Identities=28% Similarity=0.425 Sum_probs=133.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 96 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 96 (224)
||+++|++|||||||++++++..+...+.++.. ......+.+.+..+.+.+||+||+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888776666643 4455566677778899999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCC-CCCCCHHHHHHHHH-HcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 97 MTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGS-LRAVPTEDAQEFAQ-RENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
++++++++.+..|+..+.+... .+.|+++|+||+|+.. ...+..++..+... ..+.+++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888776554 5799999999999965 34455555554443 4567899999999999999999999
Q ss_pred HHHH
Q 027382 174 TEIY 177 (224)
Q Consensus 174 ~~i~ 177 (224)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8664
No 104
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=4.6e-28 Score=179.56 Aligned_cols=159 Identities=28% Similarity=0.485 Sum_probs=133.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
.||+++|++|||||||++++.++.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 58999999999999999999999888778787665443 45567788899999999999999888888999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEcCCC
Q 027382 96 DMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMETSALE 161 (224)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 161 (224)
|++++++++.+. .|+..+.+.. .+.|+++++||.|+.+. ..+...+.+++++..+. +++++||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998886 4777776543 37899999999998542 23445677888888774 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027382 162 ATNVETAFLTVLTEI 176 (224)
Q Consensus 162 ~~~v~~~~~~i~~~i 176 (224)
|.|++++|.++.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999988653
No 105
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=2.9e-28 Score=177.98 Aligned_cols=152 Identities=20% Similarity=0.391 Sum_probs=118.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|.+|||||||++++..+.+. .+.|+.+.... .+. ...+.+.+||+||++.+..++..+++++|++||||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877775 46677665543 222 35688999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGH-ADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEATNVETAF 169 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~~~ 169 (224)
|++++++++.+..|+..+... .....|+++++||.|+.+. ....++.+... ...+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999998877666432 2246899999999999642 22333332221 123457899999999999999
Q ss_pred HHHHH
Q 027382 170 LTVLT 174 (224)
Q Consensus 170 ~~i~~ 174 (224)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 98863
No 106
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=8.2e-28 Score=177.42 Aligned_cols=157 Identities=29% Similarity=0.533 Sum_probs=132.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|||||||+++|.+..+...+.++.. ..........+..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999988766666643 444455667788999999999999988888888899999999999
Q ss_pred eCCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCCCC-----------CCCHHHHHHHHHHcCC-eEEEEcCCCC
Q 027382 96 DMTKRQSFDHMAR-WLDELRGHADKNIVIMLIGNKCDLGSLR-----------AVPTEDAQEFAQRENL-FFMETSALEA 162 (224)
Q Consensus 96 d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~s~~~~ 162 (224)
|+++++++..... |+..+..... +.|+++|+||+|+.+.. .+..++..+++..++. +++++|+++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999999887755 7777665543 79999999999986543 2356778888888887 8999999999
Q ss_pred CCHHHHHHHHHH
Q 027382 163 TNVETAFLTVLT 174 (224)
Q Consensus 163 ~~v~~~~~~i~~ 174 (224)
.|+.++|+.+++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999998874
No 107
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=1.1e-27 Score=179.47 Aligned_cols=160 Identities=29% Similarity=0.512 Sum_probs=134.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
.||+|+|++|+|||||++++..+.+...+.++.+..+. ..+.+++..+.+.+||++|++.+.......+..+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 58999999999999999999988877666666544433 35566778889999999999888877777889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCC----------CCCCCHHHHHHHHHHcCC-eEEEEcCCCCC
Q 027382 96 DMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGS----------LRAVPTEDAQEFAQRENL-FFMETSALEAT 163 (224)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 163 (224)
|++++++++.+. .|+..+....+ +.|+++|+||+|+.+ .+.+..++...+++..+. +|+++||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999997 58888876554 699999999999843 234556788889999885 79999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027382 164 NVETAFLTVLTEIY 177 (224)
Q Consensus 164 ~v~~~~~~i~~~i~ 177 (224)
|++++|+++...++
T Consensus 160 ~v~~~f~~l~~~~~ 173 (187)
T cd04129 160 GVDDVFEAATRAAL 173 (187)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999997663
No 108
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=5.3e-28 Score=179.05 Aligned_cols=157 Identities=21% Similarity=0.338 Sum_probs=125.1
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
..+..++|+++|++|||||||++++.+... ..+.++.+... ..+.++ .+.+.+||+||++.++..+..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 445678999999999999999999998754 34556655333 333343 5789999999999999899999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEcCCCCCC
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGH-ADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-----ENLFFMETSALEATN 164 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~ 164 (224)
+++|||++++.++.....|+..+... ...+.|+++|+||+|+.+. ...+++.++.+. .+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 162 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEG 162 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence 99999999999999888888776543 2357999999999999643 245566666532 356899999999999
Q ss_pred HHHHHHHHHH
Q 027382 165 VETAFLTVLT 174 (224)
Q Consensus 165 v~~~~~~i~~ 174 (224)
++++|++++.
T Consensus 163 i~~l~~~l~~ 172 (173)
T cd04154 163 LLQGIDWLVD 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999998864
No 109
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.96 E-value=5.2e-30 Score=181.44 Aligned_cols=178 Identities=29% Similarity=0.514 Sum_probs=166.8
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA 88 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 88 (224)
...++..||++++|..++||||+|++++-+-+...|..++|.++....+.+...++.+.+||++|++++..+...|+++|
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga 93 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA 93 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA 168 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 168 (224)
.+.++||+.+|..||+...+|++.+....+ ++|.++|-||+|+.+...+...+++.++++.+..++.+|++...|+..+
T Consensus 94 qa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~v 172 (246)
T KOG4252|consen 94 QASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHV 172 (246)
T ss_pred cceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence 999999999999999999999999988776 7999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCc
Q 027382 169 FLTVLTEIYRIISKKSLTA 187 (224)
Q Consensus 169 ~~~i~~~i~~~~~~~~~~~ 187 (224)
|..+++.+.+++.+.....
T Consensus 173 F~YLaeK~~q~~kq~~~~~ 191 (246)
T KOG4252|consen 173 FAYLAEKLTQQKKQSLNAN 191 (246)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 9999999999887744333
No 110
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.5e-27 Score=179.71 Aligned_cols=147 Identities=25% Similarity=0.403 Sum_probs=125.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC-----CeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-----HKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
+||+++|+.|||||||++++.++.+...+.+|++.++....+.++ +..+.+.+||++|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888888877776666663 467899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcC-------------------CCCCcEEEEEeCCCCCCCCCCCHHH----HHHHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHA-------------------DKNIVIMLIGNKCDLGSLRAVPTED----AQEFA 147 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~ilv~nK~D~~~~~~~~~~~----~~~~~ 147 (224)
+|+|||++++++++.+..|+..+.+.. ..++|+++|+||.|+.+++.+..+. ...++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999886531 2469999999999997665554442 44677
Q ss_pred HHcCCeEEEEcCCCC
Q 027382 148 QRENLFFMETSALEA 162 (224)
Q Consensus 148 ~~~~~~~~~~s~~~~ 162 (224)
.+.+++.++.+++++
T Consensus 161 ~~~~~~~i~~~c~~~ 175 (202)
T cd04102 161 EQGNAEEINLNCTNG 175 (202)
T ss_pred HhcCCceEEEecCCc
Confidence 889999888887754
No 111
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=4.4e-27 Score=180.02 Aligned_cols=165 Identities=29% Similarity=0.534 Sum_probs=143.8
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
.....+||+++|++|||||||+++++.+.+...+.++.+.++....+..+...+.+.+||++|++.+...+..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 45567999999999999999999999888888889998888888777778889999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
+++|||+++..++..+..|+..+.+.. .++|+++++||+|+.+ +....+ ...++...++.++++|+++|.|+++.|.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 161 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPFL 161 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998887654 4799999999999864 333333 3467777888999999999999999999
Q ss_pred HHHHHHHH
Q 027382 171 TVLTEIYR 178 (224)
Q Consensus 171 ~i~~~i~~ 178 (224)
++.+.+..
T Consensus 162 ~ia~~l~~ 169 (215)
T PTZ00132 162 WLARRLTN 169 (215)
T ss_pred HHHHHHhh
Confidence 99987754
No 112
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=2.1e-27 Score=174.67 Aligned_cols=159 Identities=27% Similarity=0.362 Sum_probs=123.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|||||||+++|.++.+...+.++ ... ......+.+..+.+.+||+||.+.+...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999998886554332 222 2233445677889999999999888777888889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC--HHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHH
Q 027382 96 DMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSLRAVP--TEDAQEFAQREN--LFFMETSALEATNVETAFL 170 (224)
Q Consensus 96 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~~~ 170 (224)
|++++++++.+. .|+..+..... +.|+++|+||+|+.+..... .+++..+....+ .+++++||+++.|++++|.
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999985 58777776543 79999999999996544321 233334444332 3799999999999999999
Q ss_pred HHHHHHH
Q 027382 171 TVLTEIY 177 (224)
Q Consensus 171 ~i~~~i~ 177 (224)
.+...+.
T Consensus 158 ~~~~~~~ 164 (166)
T cd01893 158 YAQKAVL 164 (166)
T ss_pred HHHHHhc
Confidence 9887664
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=3.2e-27 Score=172.74 Aligned_cols=152 Identities=18% Similarity=0.342 Sum_probs=119.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEF-SVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+|+++|++|||||||+++|.+... ...+.++.+.+... +....+.+.+||+||++.+..++..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES----FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE----EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 44566776654332 2245688999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcC---CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHA---DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEATNVET 167 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~ 167 (224)
|++++.++..+..|+..+.+.. ..++|+++|+||+|+.+.. ...++.+... ....+++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999988888887775532 2479999999999996432 2333333222 1224589999999999999
Q ss_pred HHHHHHH
Q 027382 168 AFLTVLT 174 (224)
Q Consensus 168 ~~~~i~~ 174 (224)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=4.3e-27 Score=174.32 Aligned_cols=153 Identities=24% Similarity=0.394 Sum_probs=120.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
.++|+++|++|+|||||++++.++.+.. +.++.+.++.. .. ...+.+.+||+||++.+...+..+++.+|++++|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IV--YKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EE--ECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 5799999999999999999999877654 45665554432 22 2468899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEcCCCCCCHHHH
Q 027382 95 YDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFA-----QRENLFFMETSALEATNVETA 168 (224)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~ 168 (224)
+|+++++++.....++..+.+.. ..+.|+++++||+|+.+ ....+++.+.. +..+++++++||++|.|++++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence 99999999988887776665433 24699999999999864 23344433322 223457899999999999999
Q ss_pred HHHHHH
Q 027382 169 FLTVLT 174 (224)
Q Consensus 169 ~~~i~~ 174 (224)
|++|.+
T Consensus 168 ~~~l~~ 173 (174)
T cd04153 168 LDWIAS 173 (174)
T ss_pred HHHHhc
Confidence 999864
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=2.6e-27 Score=174.36 Aligned_cols=151 Identities=20% Similarity=0.320 Sum_probs=120.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 96 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 96 (224)
+|+++|.+|||||||++++.+. +...+.++.+.... .+. ...+.+.+||+||+..++.++..+++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLR--LDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE--EEE--ECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 55667777665432 333 356889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHH------HHHHHHcC--CeEEEEcCCCC-----
Q 027382 97 MTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDA------QEFAQREN--LFFMETSALEA----- 162 (224)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~------~~~~~~~~--~~~~~~s~~~~----- 162 (224)
++++.+++.+..|+..+.+... .+.|+++|+||.|+++.+. ..++ .+++++.+ ..++++||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 9999999999999988876532 5799999999999975432 2222 23333333 45788999998
Q ss_pred -CCHHHHHHHHHH
Q 027382 163 -TNVETAFLTVLT 174 (224)
Q Consensus 163 -~~v~~~~~~i~~ 174 (224)
.|+.+.|+||..
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999864
No 116
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=9.4e-27 Score=172.44 Aligned_cols=158 Identities=27% Similarity=0.450 Sum_probs=129.1
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
.+..++|+++|..|||||||++++..+... ...||.|..... +.+ ..+.+.+||.+|+..++..|..++.++|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~--i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEE--IKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEE--EEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccce--eee--CcEEEEEEeccccccccccceeecccccee
Confidence 378899999999999999999999976543 356666655443 333 557889999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc------CCeEEEEcCCCCCC
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE------NLFFMETSALEATN 164 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~------~~~~~~~s~~~~~~ 164 (224)
|||+|.++.+.+.+....+..+.... ..+.|+++++||.|+++ ....+++....... .+.++.+|+.+|+|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 99999999999999988887776543 25799999999999874 45667777655432 34588999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 165 VETAFLTVLTEI 176 (224)
Q Consensus 165 v~~~~~~i~~~i 176 (224)
+.+.|+||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999998764
No 117
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=6.9e-27 Score=174.69 Aligned_cols=164 Identities=18% Similarity=0.239 Sum_probs=125.8
Q ss_pred cccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHh
Q 027382 4 LYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSA 83 (224)
Q Consensus 4 ~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 83 (224)
++. |...+...++|+++|.+|||||||++++.+..+. .+.++.+.+.. .+.+ ..+.+.+||+||+..+...+..
T Consensus 7 ~~~-~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~ 80 (184)
T smart00178 7 ILA-SLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSE--ELAI--GNIKFTTFDLGGHQQARRLWKD 80 (184)
T ss_pred HHH-HhccccccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceE--EEEE--CCEEEEEEECCCCHHHHHHHHH
Confidence 344 3444455699999999999999999999987654 33445443332 2223 4578999999999999999999
Q ss_pred HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc------------
Q 027382 84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE------------ 150 (224)
Q Consensus 84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~------------ 150 (224)
++.++|++++|+|+++++++.....++..+.+.. ..+.|+++|+||+|++. .++.+++.+.....
T Consensus 81 ~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~ 158 (184)
T smart00178 81 YFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVR 158 (184)
T ss_pred HhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCc
Confidence 9999999999999999999988888877665432 24789999999999863 45566666544211
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382 151 NLFFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 151 ~~~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
...++++||+++.|+++++++|...
T Consensus 159 ~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 159 PLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eeEEEEeecccCCChHHHHHHHHhh
Confidence 2348999999999999999999754
No 118
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=1.5e-26 Score=170.19 Aligned_cols=152 Identities=24% Similarity=0.415 Sum_probs=118.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC------CCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEF------SVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
+|+++|++|||||||+++|.+... ...+.++.+.... .+.+ ....+.+||+||++.+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV--GNARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999986432 1233444444443 2233 36789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-------cCCeEEEEcCCCC
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-------ENLFFMETSALEA 162 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~ 162 (224)
+++|+|+++++++.....|+..+.+.. ..+.|+++++||+|+.+ ....+++.++... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999989998888887776543 25799999999999864 3345555555443 2357999999999
Q ss_pred CCHHHHHHHHHH
Q 027382 163 TNVETAFLTVLT 174 (224)
Q Consensus 163 ~~v~~~~~~i~~ 174 (224)
.|++++|++|.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 119
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=1.4e-27 Score=175.21 Aligned_cols=166 Identities=30% Similarity=0.493 Sum_probs=148.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
...+|++|+|+.++|||+|+..+..+.++..|.||+- +-+...+.++ +..+.+.+|||.|+++|..+++..++.+|.+
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999965 6666778884 9999999999999999999888899999999
Q ss_pred EEEEeCCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEE
Q 027382 92 MLVYDMTKRQSFDHMAR-WLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMET 157 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (224)
+++|++.++++++++.. |+..+..+++ ++|+++|++|.||.+. ..+..+++.+.+++.|+ .|+++
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 99999999999999765 9999998884 8999999999999642 36788899999999995 69999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHH
Q 027382 158 SALEATNVETAFLTVLTEIYRII 180 (224)
Q Consensus 158 s~~~~~~v~~~~~~i~~~i~~~~ 180 (224)
||++..|+.++|+..+...+...
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhccc
Confidence 99999999999999998876544
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=2.6e-26 Score=172.44 Aligned_cols=157 Identities=21% Similarity=0.319 Sum_probs=125.9
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
....++|+++|++|||||||++++.+..+. .+.++.+.+. ..+.+ ..+.+.+||+||+..+...+..+++.+|++
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~i 90 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTI--GNIKFKTFDLGGHEQARRLWKDYFPEVDGI 90 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 345789999999999999999999987763 4555554433 23333 347889999999999988899999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc----------------CCeE
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE----------------NLFF 154 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~----------------~~~~ 154 (224)
++|+|+++.++++....|+..+.+... .+.|+++++||+|+.. .+..++++.+...+ ...+
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence 999999999999888888877765433 5699999999999863 45667777766532 2358
Q ss_pred EEEcCCCCCCHHHHHHHHHHH
Q 027382 155 METSALEATNVETAFLTVLTE 175 (224)
Q Consensus 155 ~~~s~~~~~~v~~~~~~i~~~ 175 (224)
++|||++|.|+.++|.++.+.
T Consensus 169 ~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 169 FMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEeEecCCCChHHHHHHHHhh
Confidence 999999999999999999764
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=1.7e-26 Score=168.73 Aligned_cols=152 Identities=24% Similarity=0.427 Sum_probs=118.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 96 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 96 (224)
+|+++|++|||||||++++.+..+.. +.++.+.+.. .+.. ...+.+.+||+||++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999988753 3566554433 2333 345789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH------HHcCCeEEEEcCCCCCCHHHHH
Q 027382 97 MTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFA------QRENLFFMETSALEATNVETAF 169 (224)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~~v~~~~ 169 (224)
++++.++..+..|+..+.+.. ..+.|+++|+||+|+.+. ....++.... ...+++++++||++|+|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999999998888877765432 257999999999998642 2233333222 2234568999999999999999
Q ss_pred HHHHH
Q 027382 170 LTVLT 174 (224)
Q Consensus 170 ~~i~~ 174 (224)
++|..
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 98863
No 122
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=1e-25 Score=166.78 Aligned_cols=142 Identities=39% Similarity=0.722 Sum_probs=127.8
Q ss_pred CCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC
Q 027382 38 NEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA 117 (224)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~ 117 (224)
+.+...+.+|.|.++....+.+++..+.+.+|||||++.+..++..+++++|++|+|||++++++++.+..|+..+.+..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35667788999999988888888999999999999999999999999999999999999999999999999999887665
Q ss_pred CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382 118 DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 118 ~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~ 179 (224)
..+.|+++|+||+|+.+.+.+..+++..++..++..|+++||++|.|++++|.+|+..+.+.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 56789999999999976677788889999999999999999999999999999999887553
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=2.2e-26 Score=167.79 Aligned_cols=151 Identities=23% Similarity=0.396 Sum_probs=120.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 96 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 96 (224)
||+++|.+|||||||++++.+... ..+.++.+.+... ..+ ..+.+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999873 4455555544432 222 46789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEcCCCCCCHHHHHH
Q 027382 97 MTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-----ENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v~~~~~ 170 (224)
+++++++.....|+..+.... ..+.|+++++||+|+.... ..++..+.... ...+++++|+++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999988887766543 3579999999999986533 34444444332 345799999999999999999
Q ss_pred HHHH
Q 027382 171 TVLT 174 (224)
Q Consensus 171 ~i~~ 174 (224)
+|+.
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9874
No 124
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=5e-26 Score=165.96 Aligned_cols=151 Identities=23% Similarity=0.363 Sum_probs=114.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 96 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 96 (224)
||+++|++++|||||++++..+.+. .+.++.+.+.. . +++..+.+++||+||++.+..++..++..+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--T--VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--E--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999999877654 34555554443 2 23356789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHh-cCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHHH
Q 027382 97 MTKRQSFDHMARWLDELRG-HADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
++++.++.....++..+.+ ....+.|+++|+||+|+.+.. ...++.+... ..+.+++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9998888777666554433 222479999999999986422 2333322221 1234699999999999999999
Q ss_pred HHHH
Q 027382 171 TVLT 174 (224)
Q Consensus 171 ~i~~ 174 (224)
++.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9864
No 125
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.94 E-value=1.7e-25 Score=156.31 Aligned_cols=164 Identities=19% Similarity=0.329 Sum_probs=133.4
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA 88 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 88 (224)
++..++.++|+++|..|+||||++++|.+... ....|+.|..+.+ +....+++.+||.+|+...+..|+.||..+
T Consensus 10 ~k~kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~gf~Ikt----l~~~~~~L~iwDvGGq~~lr~~W~nYfest 84 (185)
T KOG0073|consen 10 QKLKEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLGFQIKT----LEYKGYTLNIWDVGGQKTLRSYWKNYFEST 84 (185)
T ss_pred HHhhhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccceeeEE----EEecceEEEEEEcCCcchhHHHHHHhhhcc
Confidence 34466799999999999999999999998663 4445555544444 345889999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHh-cCCCCCcEEEEEeCCCCCCCCCCCHHH------HHHHHHHcCCeEEEEcCCC
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRG-HADKNIVIMLIGNKCDLGSLRAVPTED------AQEFAQRENLFFMETSALE 161 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~------~~~~~~~~~~~~~~~s~~~ 161 (224)
|++|||+|.+|+..+++....+..+.. ..-...|+++++||.|++. .++.++ ++++++.++.+++.||+.+
T Consensus 85 dglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~t 162 (185)
T KOG0073|consen 85 DGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVT 162 (185)
T ss_pred CeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccc
Confidence 999999999999999888877765543 2235689999999999973 233333 4456677888999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027382 162 ATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 162 ~~~v~~~~~~i~~~i~~~ 179 (224)
|+++.+.|+|+++.+.++
T Consensus 163 ge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 163 GEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 999999999999998774
No 126
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=1.2e-25 Score=177.47 Aligned_cols=142 Identities=24% Similarity=0.489 Sum_probs=122.9
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC-------------CeEEEEEEEeCCChhhh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-------------HKTVKAQIWDTAGQERY 77 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~G~~~~ 77 (224)
+....+||+|+|+.|||||||+++|.++.+...+.+|+|.++....+.++ +..+.+.|||++|++.+
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 45577999999999999999999999999888888998888877766664 24688999999999999
Q ss_pred hhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC------------CCCcEEEEEeCCCCCCCC---C---CC
Q 027382 78 RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD------------KNIVIMLIGNKCDLGSLR---A---VP 139 (224)
Q Consensus 78 ~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ilv~nK~D~~~~~---~---~~ 139 (224)
..++..+++++|++|+|||+++..+++.+..|+..+..... .++|++||+||+|+...+ . +.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 99999999999999999999999999999999999986531 358999999999996542 2 35
Q ss_pred HHHHHHHHHHcCC
Q 027382 140 TEDAQEFAQRENL 152 (224)
Q Consensus 140 ~~~~~~~~~~~~~ 152 (224)
.+++++|++++++
T Consensus 177 ~e~a~~~A~~~g~ 189 (334)
T PLN00023 177 VDAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHHcCC
Confidence 7889999999885
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=6.1e-25 Score=163.35 Aligned_cols=154 Identities=23% Similarity=0.268 Sum_probs=114.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CCCCccC------CcceeeEEEEEEE-----CCeEEEEEEEeCCChhhhh
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE-------FSVDSKA------TIGVEFQTKTLSI-----DHKTVKAQIWDTAGQERYR 78 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~~~~~ 78 (224)
+|+++|++++|||||+++|++.. +...+.+ +.|.++......+ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 1112222 2234444443333 5677889999999999999
Q ss_pred hhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe---EE
Q 027382 79 AVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF---FM 155 (224)
Q Consensus 79 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~ 155 (224)
..+..+++.+|++|+|+|+++..+......|..... .++|+++|+||+|+.+.. ......++++..+++ ++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 999999999999999999998766665555543332 368999999999986422 223345666666653 89
Q ss_pred EEcCCCCCCHHHHHHHHHHHH
Q 027382 156 ETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 156 ~~s~~~~~~v~~~~~~i~~~i 176 (224)
++||++|.|++++|+++...+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999988654
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=5.8e-25 Score=159.75 Aligned_cols=151 Identities=25% Similarity=0.417 Sum_probs=120.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDM 97 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 97 (224)
|+++|++|||||||+++|.+..+...+.++.+..... +.. ..+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7999999999999999999998888888877655543 223 337899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEcCCCCCCHHHHHHH
Q 027382 98 TKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFA-----QRENLFFMETSALEATNVETAFLT 171 (224)
Q Consensus 98 ~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~~~~ 171 (224)
++++++.....|+..+.... ..+.|+++|+||+|+.+... ..+..+.. ....++++++|++++.|++++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 99999988888777665432 25789999999999864322 22222222 112357899999999999999999
Q ss_pred HHH
Q 027382 172 VLT 174 (224)
Q Consensus 172 i~~ 174 (224)
+.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 864
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=2e-24 Score=158.97 Aligned_cols=155 Identities=19% Similarity=0.214 Sum_probs=108.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh---------hhhHhHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR---------AVTSAYYRG 87 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~~~~~ 87 (224)
+|+++|.+|+|||||+++|.+........+. .+............+.+.+|||||..... .........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPF--TTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCC--cccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 6899999999999999999998764332221 11212222233456889999999973210 111112234
Q ss_pred CCEEEEEEeCCChhh--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382 88 AVGAMLVYDMTKRQS--FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 165 (224)
Q Consensus 88 ~d~vi~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 165 (224)
+|++++|+|+++..+ ++....|+..+.+.. .+.|+++|+||+|+.....+ .+..++....+.+++++||++|.|+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDL--SEIEEEEELEGEEVLKISTLTEEGV 156 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhH--HHHHHhhhhccCceEEEEecccCCH
Confidence 689999999998654 355667777776543 37899999999999653332 2255566656678999999999999
Q ss_pred HHHHHHHHHHH
Q 027382 166 ETAFLTVLTEI 176 (224)
Q Consensus 166 ~~~~~~i~~~i 176 (224)
+++|+++.+.+
T Consensus 157 ~~l~~~l~~~~ 167 (168)
T cd01897 157 DEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 130
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=9.4e-24 Score=153.00 Aligned_cols=158 Identities=34% Similarity=0.496 Sum_probs=125.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
.+||+++|.+|+|||||++++.+......+.++.+.+.....+..++..+.+.+||+||+..+...+..+++.+++++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999987777777777777666666766668999999999999999999999999999999
Q ss_pred EeCCCh-hhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382 95 YDMTKR-QSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172 (224)
Q Consensus 95 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 172 (224)
+|.... .++.... .|+..+.+....+.|+++++||.|+.... ........+......+++++||+++.|+.++|+.|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999876 6665555 56666655544478999999999996533 22333334444445679999999999999999876
Q ss_pred H
Q 027382 173 L 173 (224)
Q Consensus 173 ~ 173 (224)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 3
No 131
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=8.2e-24 Score=156.45 Aligned_cols=155 Identities=21% Similarity=0.330 Sum_probs=116.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
...++|+++|++|||||||++++.+.... .+.++.|.+.. .+... ...+.+||+||+..+...+..+++.+|+++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 45899999999999999999999987653 34455554433 23333 467899999999988888999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-----CeEEEEcCCCCCCHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN-----LFFMETSALEATNVE 166 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~ 166 (224)
+|+|+++..++.....++..+.... ..++|+++++||+|+.+.. ..+++.+...... .+++++||++|.|++
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~ 164 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ 164 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence 9999999888888877766654432 3479999999999986422 2233332222111 147899999999999
Q ss_pred HHHHHHHH
Q 027382 167 TAFLTVLT 174 (224)
Q Consensus 167 ~~~~~i~~ 174 (224)
++|++|.+
T Consensus 165 ~~~~~l~~ 172 (173)
T cd04155 165 EGMNWVCK 172 (173)
T ss_pred HHHHHHhc
Confidence 99999864
No 132
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=3.2e-23 Score=159.02 Aligned_cols=170 Identities=39% Similarity=0.559 Sum_probs=139.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
.+||+++|+.|||||||+++|....+...+.++.+..+...........+.+.+|||+|+++++.++..++.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 39999999999999999999999999999999888777777776666689999999999999999999999999999999
Q ss_pred EeCCC-hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHHc---CCeEEEEc
Q 027382 95 YDMTK-RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR------------AVPTEDAQEFAQRE---NLFFMETS 158 (224)
Q Consensus 95 ~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~s 158 (224)
+|.++ ..+.+....|+..+........|+++++||+|+.... .............. ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999 5556666779988888776679999999999997643 22222222222222 23389999
Q ss_pred CC--CCCCHHHHHHHHHHHHHHHHhccc
Q 027382 159 AL--EATNVETAFLTVLTEIYRIISKKS 184 (224)
Q Consensus 159 ~~--~~~~v~~~~~~i~~~i~~~~~~~~ 184 (224)
++ ++.++.++|..+...+........
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 192 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIEKLV 192 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence 99 999999999999999876655443
No 133
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.92 E-value=4.3e-24 Score=162.17 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=112.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhH
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER---------YRAVTS 82 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~ 82 (224)
.+..++|+|+|++|||||||++++.+........+..+.......+.+.+ ...+.+|||||... +...+
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 45678999999999999999999999764333222222222333333332 23789999999621 22221
Q ss_pred hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 027382 83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEA 162 (224)
Q Consensus 83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 162 (224)
..+..+|++++|+|++++.+......|...+......+.|+++|+||+|+.+... ...+....+.+++++||+++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~-----~~~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE-----LEERLEAGRPDAVFISAKTG 190 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH-----HHHHhhcCCCceEEEEcCCC
Confidence 2367899999999999988887777777777665445789999999999864322 11444555678999999999
Q ss_pred CCHHHHHHHHHHH
Q 027382 163 TNVETAFLTVLTE 175 (224)
Q Consensus 163 ~~v~~~~~~i~~~ 175 (224)
.|+++++++|...
T Consensus 191 ~gi~~l~~~L~~~ 203 (204)
T cd01878 191 EGLDELLEAIEEL 203 (204)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998754
No 134
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.92 E-value=4.8e-24 Score=157.16 Aligned_cols=157 Identities=15% Similarity=0.098 Sum_probs=109.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh----hhhhhhHh---HhcCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE----RYRAVTSA---YYRGAV 89 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----~~~~~~~~---~~~~~d 89 (224)
+|+++|.+|||||||+++|.+........+..........+... ....+.+|||||.. ....+... .+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 68999999999999999999765422221211111111112222 22489999999953 11122223 345699
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEcCCCCCCH
Q 027382 90 GAMLVYDMTKR-QSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-ENLFFMETSALEATNV 165 (224)
Q Consensus 90 ~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v 165 (224)
++++|+|++++ .+++.+..|.+.+.+... ...|+++|+||+|+.+.... .+....+... .+.+++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 788888888888776542 36899999999999654433 3445556655 3678999999999999
Q ss_pred HHHHHHHHHH
Q 027382 166 ETAFLTVLTE 175 (224)
Q Consensus 166 ~~~~~~i~~~ 175 (224)
+++|+++.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 135
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=1.5e-23 Score=169.06 Aligned_cols=162 Identities=13% Similarity=0.038 Sum_probs=117.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhHhcCC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSAYYRGA 88 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~ 88 (224)
-.|+|+|.|+||||||+++|.+........+..+.....-.+.+ .....+.+||+||..+ ....+...+..+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~-~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRV-DDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEe-CCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 45999999999999999999986644333333222222222222 1345689999999532 222334456689
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 166 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 166 (224)
+++++|+|+++.++++....|...+..... .+.|+++|+||+|+.+.........+.++...+.+++++||++++|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 999999999987788888889888876543 468999999999997544433344555666667889999999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 167 TAFLTVLTEIYR 178 (224)
Q Consensus 167 ~~~~~i~~~i~~ 178 (224)
++|+++.+.+.+
T Consensus 318 eL~~~L~~~l~~ 329 (335)
T PRK12299 318 ELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=9.8e-24 Score=154.44 Aligned_cols=151 Identities=17% Similarity=0.143 Sum_probs=103.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC---CCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNE---FSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
+.|+++|.+|||||||+++|.+.. +...+.+..+.+.......+.. ...+.+|||||++.+......++..+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999999743 2222222223333333333331 468999999999988777777889999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHH---cCCeEEEEcCCCCCC
Q 027382 93 LVYDMTK---RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--VPTEDAQEFAQR---ENLFFMETSALEATN 164 (224)
Q Consensus 93 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~s~~~~~~ 164 (224)
+|+|+++ +++.+ .+..+... . ..|+++++||+|+.+... ...+++.++... .+.+++++|++++.|
T Consensus 80 ~V~d~~~~~~~~~~~----~~~~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTRE----HLEILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHH----HHHHHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 33332 22222221 1 248999999999964321 112344454444 457899999999999
Q ss_pred HHHHHHHHH
Q 027382 165 VETAFLTVL 173 (224)
Q Consensus 165 v~~~~~~i~ 173 (224)
++++|+.+.
T Consensus 154 v~~l~~~l~ 162 (164)
T cd04171 154 IEELKEYLD 162 (164)
T ss_pred HHHHHHHHh
Confidence 999998875
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=3.8e-24 Score=153.25 Aligned_cols=134 Identities=21% Similarity=0.209 Sum_probs=99.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh-----hhhhhhHhHhcCCCEE
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE-----RYRAVTSAYYRGAVGA 91 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-----~~~~~~~~~~~~~d~v 91 (224)
||+++|++|||||||+++|.+.... +.++.+ +.+. -.+|||||.. .+..+. ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYN-----DGAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEc-----CeeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 8999999999999999999987642 223321 1121 1689999972 233333 357899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVETAFL 170 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~ 170 (224)
|+|||++++.++.. ..|...+ ..|+++|+||+|+.+ .....++++++++..+. +++++||++|.|++++|.
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999887654 3343322 248999999999964 34456777888888776 799999999999999998
Q ss_pred HHH
Q 027382 171 TVL 173 (224)
Q Consensus 171 ~i~ 173 (224)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 138
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.4e-24 Score=152.52 Aligned_cols=160 Identities=20% Similarity=0.374 Sum_probs=134.1
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
.....+|+++|-.++||||++.+|..++.... .||+|..+....+ ..+.+++||.+|++.++.+|..|+++.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence 44678999999999999999999998887555 7887877666443 589999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-----eEEEEcCCCCCCH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-----FFMETSALEATNV 165 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~~~v 165 (224)
|||+|.+|++.+.++++.+..+..+.. .+.|+++++||.|+++ ..+..++.+....+.+ .+..++|.+|+|+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence 999999999999999998877766654 6899999999999985 4455566555544333 4677899999999
Q ss_pred HHHHHHHHHHHHH
Q 027382 166 ETAFLTVLTEIYR 178 (224)
Q Consensus 166 ~~~~~~i~~~i~~ 178 (224)
.+.++++...+..
T Consensus 167 ~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 167 YEGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
No 139
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=2e-22 Score=144.73 Aligned_cols=153 Identities=46% Similarity=0.751 Sum_probs=120.7
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCC
Q 027382 20 LIGDSAVGKSQLLARFARNEF-SVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMT 98 (224)
Q Consensus 20 v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~ 98 (224)
++|++|+|||||++++.+... ...+.++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 44454553 5666666666677889999999999988888888999999999999999
Q ss_pred ChhhHHHHHHHH-HHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHH-HHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 99 KRQSFDHMARWL-DELRGHADKNIVIMLIGNKCDLGSLRAVPTED-AQEFAQRENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 99 ~~~s~~~~~~~~-~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
++.+......|. ...........|+++++||+|+.......... ...+......+++++|++++.|+.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999988888872 22333334579999999999986544332222 3455555678899999999999999999875
No 140
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=2.7e-23 Score=156.62 Aligned_cols=149 Identities=15% Similarity=0.189 Sum_probs=107.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc--CCCCCCc------------cCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhh
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR--NEFSVDS------------KATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVT 81 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 81 (224)
-+|+++|++++|||||+++|++ +.+...+ ..+.+.++......+.+..+.+.+|||||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999997 3433322 1234555655555666677899999999999999999
Q ss_pred HhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC-CCHHHHHHHHHH-------cCCe
Q 027382 82 SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA-VPTEDAQEFAQR-------ENLF 153 (224)
Q Consensus 82 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~~ 153 (224)
..+++.+|++++|||+++. .......++..+.. .++|+++++||+|+.+... ...+++.++... .+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 9999999999999999873 22333344444333 2689999999999964322 113344555432 3678
Q ss_pred EEEEcCCCCCCHHHH
Q 027382 154 FMETSALEATNVETA 168 (224)
Q Consensus 154 ~~~~s~~~~~~v~~~ 168 (224)
++++||++|.|+.+.
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999877443
No 141
>PRK04213 GTP-binding protein; Provisional
Probab=99.90 E-value=1.5e-23 Score=158.77 Aligned_cols=153 Identities=24% Similarity=0.256 Sum_probs=106.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC-----------hhhhhhh
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG-----------QERYRAV 80 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~~ 80 (224)
+...++|+++|.+|||||||+++|.+..+...+.+ +.++....+.+. .+.+||||| ++.++..
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence 44678999999999999999999998876544444 344444443332 589999999 5666666
Q ss_pred hHhHhc----CCCEEEEEEeCCChhhH-H---------HHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHH
Q 027382 81 TSAYYR----GAVGAMLVYDMTKRQSF-D---------HMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF 146 (224)
Q Consensus 81 ~~~~~~----~~d~vi~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 146 (224)
+..++. .++++++|+|.++.... + ....++..+.. .++|+++|+||+|+.+.. .+...++
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~---~~~~~~~ 153 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR---DEVLDEI 153 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH---HHHHHHH
Confidence 666654 45788889988653221 0 11122222322 369999999999986422 3455666
Q ss_pred HHHcCC---------eEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382 147 AQRENL---------FFMETSALEATNVETAFLTVLTEIY 177 (224)
Q Consensus 147 ~~~~~~---------~~~~~s~~~~~~v~~~~~~i~~~i~ 177 (224)
....++ +++++||++| |++++|++|.+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 666554 4799999999 99999999987764
No 142
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.90 E-value=1.1e-22 Score=147.92 Aligned_cols=147 Identities=16% Similarity=0.144 Sum_probs=108.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh------hhHhHhc--CCCEE
Q 027382 20 LIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA------VTSAYYR--GAVGA 91 (224)
Q Consensus 20 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~~--~~d~v 91 (224)
|+|.+|+|||||++++.+......+.+..+.+.....+.+++ ..+.+|||||+..+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765444444444455445555543 5789999999876543 3455564 99999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT 171 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 171 (224)
++|+|+++++... .++..+.+ .+.|+++++||+|+.+...+. .+.+.+....+.+++++|++++.|++++++.
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIK-IDLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999999865433 33333333 268999999999997544433 3356777778889999999999999999998
Q ss_pred HHHH
Q 027382 172 VLTE 175 (224)
Q Consensus 172 i~~~ 175 (224)
+...
T Consensus 152 l~~~ 155 (158)
T cd01879 152 IAEL 155 (158)
T ss_pred HHHH
Confidence 8765
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.90 E-value=1.2e-22 Score=149.30 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=107.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
.|+++|.+|+|||||+++|....+...+.++...+.....+... .....+.+|||||++.+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999887665443332223222222222 24678999999999999888888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC-HHHHHHHHH------HcCCeEEEEcCCCCCCHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP-TEDAQEFAQ------RENLFFMETSALEATNVETA 168 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~s~~~~~~v~~~ 168 (224)
|+++..... ....+..+.. .+.|+++|+||+|+.+..... ......+.. ....+++++|+++|.|+.++
T Consensus 82 d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 998743222 1222222332 368999999999986422100 111222211 11357999999999999999
Q ss_pred HHHHHHHH
Q 027382 169 FLTVLTEI 176 (224)
Q Consensus 169 ~~~i~~~i 176 (224)
++++.+..
T Consensus 158 ~~~l~~~~ 165 (168)
T cd01887 158 LEAILLLA 165 (168)
T ss_pred HHHHHHhh
Confidence 99988654
No 144
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.4e-22 Score=138.13 Aligned_cols=156 Identities=22% Similarity=0.452 Sum_probs=131.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
..++|+++|-.++||||++..|.-+.. ....||+|..+..+ .+..+.+.+||.+|++..+..|++|+....++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetV----tykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETV----TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEE----EeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 378999999999999999999987654 55667777666653 4588899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-----eEEEEcCCCCCCHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-----FFMETSALEATNVET 167 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~~~v~~ 167 (224)
|+|.++.+.+++++..+..+.++.+ .+.|+++.+||.|+++ ....+++..+.+-..+ .+.++++.+|.|+.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 9999999999999988777766654 6899999999999985 4567888877765433 367899999999999
Q ss_pred HHHHHHHHH
Q 027382 168 AFLTVLTEI 176 (224)
Q Consensus 168 ~~~~i~~~i 176 (224)
-|.++.+..
T Consensus 169 glswlsnn~ 177 (180)
T KOG0071|consen 169 GLSWLSNNL 177 (180)
T ss_pred HHHHHHhhc
Confidence 999988653
No 145
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.90 E-value=6.2e-22 Score=137.00 Aligned_cols=176 Identities=24% Similarity=0.359 Sum_probs=142.3
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC--CccCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhh-hhhhHhHhc
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSV--DSKATIGVEFQTKTLSI-DHKTVKAQIWDTAGQERY-RAVTSAYYR 86 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~-~~~~~~~~~ 86 (224)
+--...||+|+|..++|||+++++|+.++..+ .+.+|+. +++...+.- .+..-.++++||.|.... ..+-.+|+.
T Consensus 5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q 83 (198)
T KOG3883|consen 5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQ 83 (198)
T ss_pred hhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhc
Confidence 44567899999999999999999999876543 3455543 333343333 455668999999996655 677889999
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382 87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 165 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 165 (224)
-+|++++||+..+++||+.+..+-..+.++.. +.+|+++++||.|+.+.+++..+.+..|++...+.++++++.+...+
T Consensus 84 ~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL 163 (198)
T KOG3883|consen 84 FADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSL 163 (198)
T ss_pred cCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence 99999999999999999988776666665543 67999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCc
Q 027382 166 ETAFLTVLTEIYRIISKKSLTA 187 (224)
Q Consensus 166 ~~~~~~i~~~i~~~~~~~~~~~ 187 (224)
-+.|..+...+.....+.....
T Consensus 164 ~epf~~l~~rl~~pqskS~Fpl 185 (198)
T KOG3883|consen 164 YEPFTYLASRLHQPQSKSTFPL 185 (198)
T ss_pred hhHHHHHHHhccCCcccccCcc
Confidence 9999999888766555544433
No 146
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=4.7e-22 Score=161.56 Aligned_cols=155 Identities=18% Similarity=0.155 Sum_probs=110.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh---------hhhhhhhHh
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ---------ERYRAVTSA 83 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~~~ 83 (224)
+..++|+++|.+|+|||||+|+|.+........+..+.+.....+.+.+ ...+.+|||+|. +.+...+ .
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-E 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence 4568999999999999999999999775433333323344445555532 347899999996 2222222 3
Q ss_pred HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382 84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT 163 (224)
Q Consensus 84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (224)
.+.++|++++|+|++++.+.+....|...+......+.|+++|+||+|+.+.. +..... ....+++++||++|.
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~~-~~~~~~i~iSAktg~ 338 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERLE-EGYPEAVFVSAKTGE 338 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHHH-hCCCCEEEEEccCCC
Confidence 47899999999999998887777666666665443478999999999986421 222221 222468999999999
Q ss_pred CHHHHHHHHHHH
Q 027382 164 NVETAFLTVLTE 175 (224)
Q Consensus 164 ~v~~~~~~i~~~ 175 (224)
|++++++.|.+.
T Consensus 339 GI~eL~~~I~~~ 350 (351)
T TIGR03156 339 GLDLLLEAIAER 350 (351)
T ss_pred CHHHHHHHHHhh
Confidence 999999988653
No 147
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=4.8e-22 Score=160.17 Aligned_cols=159 Identities=14% Similarity=0.094 Sum_probs=112.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhHhcCC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSAYYRGA 88 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~ 88 (224)
..|+++|.++||||||+++|.+........+..+.....-.+.+. ....+.+||+||..+ ....+...+..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 469999999999999999999876433333322222222223332 236789999999632 222233345679
Q ss_pred CEEEEEEeCCCh---hhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382 89 VGAMLVYDMTKR---QSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT 163 (224)
Q Consensus 89 d~vi~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (224)
+++++|+|+++. ++++.+..|...+..... .+.|+++|+||+|+.+... ..+..+++.+..+.+++++||++++
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence 999999999986 677777777776665432 4689999999999965322 2334455666677889999999999
Q ss_pred CHHHHHHHHHHHH
Q 027382 164 NVETAFLTVLTEI 176 (224)
Q Consensus 164 ~v~~~~~~i~~~i 176 (224)
|+++++.++.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999988654
No 148
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=1e-22 Score=145.94 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=101.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh------hhhhhhHhHh--cC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE------RYRAVTSAYY--RG 87 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------~~~~~~~~~~--~~ 87 (224)
|+|+++|.|+||||||+|+|.+........|. .|.......+......+.++|+||-- ........++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG--~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPG--TTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTT--SSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCC--CCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 68999999999999999999999866555554 44444443343344789999999921 1123334443 68
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET 167 (224)
Q Consensus 88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 167 (224)
.|+++.|+|++..+.-- .....+.+. ++|+++++||+|....+.... +.+.+.+..++|++++||+++.|+++
T Consensus 79 ~D~ii~VvDa~~l~r~l---~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL---YLTLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHHH---HHHHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHHH---HHHHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 99999999998743222 222333333 699999999999865443322 47788888899999999999999999
Q ss_pred HHHHH
Q 027382 168 AFLTV 172 (224)
Q Consensus 168 ~~~~i 172 (224)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98765
No 149
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.89 E-value=2.7e-22 Score=158.36 Aligned_cols=153 Identities=18% Similarity=0.121 Sum_probs=103.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhHhHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY--------RAVTSAYYRGA 88 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~~~~~ 88 (224)
+|+++|.+|||||||+|+|.+......+..+ +++..............+.+|||||.... .......+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~-~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKA-QTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCC-CcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 6899999999999999999998764322221 12222111112223357899999995432 11234567899
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHH
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVET 167 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~ 167 (224)
|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+.+.. ........+....+. +++++||++|.|+++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKD-KLLPLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHH-HHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 9999999999866554 344444443 268999999999986321 112334455555554 799999999999999
Q ss_pred HHHHHHHHH
Q 027382 168 AFLTVLTEI 176 (224)
Q Consensus 168 ~~~~i~~~i 176 (224)
+++.+.+.+
T Consensus 155 L~~~l~~~l 163 (270)
T TIGR00436 155 LAAFIEVHL 163 (270)
T ss_pred HHHHHHHhC
Confidence 999887655
No 150
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=2.1e-22 Score=139.90 Aligned_cols=114 Identities=32% Similarity=0.603 Sum_probs=89.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFS--VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
||+|+|++|||||||+++|.+.... ..+.+..+.+.......+......+.+||++|++.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 22333445556655666777887899999999998988888889999999999
Q ss_pred EeCCChhhHHHHHHH---HHHHHhcCCCCCcEEEEEeCCC
Q 027382 95 YDMTKRQSFDHMARW---LDELRGHADKNIVIMLIGNKCD 131 (224)
Q Consensus 95 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ilv~nK~D 131 (224)
||+++++++..+.++ +..+.... .++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 999999999988655 55554433 4699999999998
No 151
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.89 E-value=9e-23 Score=140.17 Aligned_cols=154 Identities=23% Similarity=0.411 Sum_probs=127.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
..+.+.++|-.++|||||+|....+.+...-.|+.|..... ++...+.+.+||.||+..++++|..|.+.+++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 45778999999999999999999888877777887765554 56788999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--------CeEEEEcCCCCCC
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN--------LFFMETSALEATN 164 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~~~ 164 (224)
|+|+++++.++..+..+..+..... ..+|+++.+||.|+++ ..+..+ +..+.+ +-.|.+|+++..|
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~---li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIA---LIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHH---HHHHhCccccccceEEEEEEEEcCCcc
Confidence 9999999999998887776665443 6899999999999974 333333 333333 3478999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 165 VETAFLTVLTEI 176 (224)
Q Consensus 165 v~~~~~~i~~~i 176 (224)
++.+..|+++.-
T Consensus 170 id~~~~Wli~hs 181 (186)
T KOG0075|consen 170 IDITLDWLIEHS 181 (186)
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 152
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=9.4e-22 Score=164.12 Aligned_cols=156 Identities=20% Similarity=0.222 Sum_probs=114.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhH
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA--------VTS 82 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~ 82 (224)
.+..++|+++|.+|+|||||+|+|++.... ....+..+.+.....+.++ ...+.+|||||...+.. ...
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~--g~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN--GILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC--CEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 456789999999999999999999987542 2223332334444444454 45678999999754322 124
Q ss_pred hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 027382 83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEA 162 (224)
Q Consensus 83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 162 (224)
.+++.+|++++|||++++.+.+.. |+..+.. .+.|+++|+||+|+... +...+++..+.+++++|+++
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~- 345 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ- 345 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-
Confidence 578899999999999988776654 6555542 36899999999998642 23455666778899999998
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 027382 163 TNVETAFLTVLTEIYRIIS 181 (224)
Q Consensus 163 ~~v~~~~~~i~~~i~~~~~ 181 (224)
.|++++|+.+.+.+.+...
T Consensus 346 ~gI~~~~~~L~~~i~~~~~ 364 (442)
T TIGR00450 346 LKIKALVDLLTQKINAFYS 364 (442)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 6999999999998877653
No 153
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=1.6e-21 Score=168.06 Aligned_cols=156 Identities=20% Similarity=0.253 Sum_probs=117.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC-------CCCCccC------CcceeeEEEEEEE-----CCeEEEEEEEeCCChhh
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNE-------FSVDSKA------TIGVEFQTKTLSI-----DHKTVKAQIWDTAGQER 76 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~~~ 76 (224)
.-+|+++|+.++|||||+++|+... +...+.. ..|.++....+.+ ++..+.+.+|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998742 1122221 2356666554444 35568999999999999
Q ss_pred hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC---e
Q 027382 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL---F 153 (224)
Q Consensus 77 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 153 (224)
+...+..++..+|++|+|+|+++..+......|...+. .++|+++|+||+|+.... ......++....++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999998766666666654443 268999999999986422 12233455555555 3
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH
Q 027382 154 FMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 154 ~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
++++||++|.|++++|+.+.+.+
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhC
Confidence 89999999999999999988765
No 154
>PRK15494 era GTPase Era; Provisional
Probab=99.88 E-value=1.2e-21 Score=158.97 Aligned_cols=155 Identities=26% Similarity=0.329 Sum_probs=105.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-hhh-------hhHhH
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-YRA-------VTSAY 84 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~-------~~~~~ 84 (224)
...++|+++|.+|||||||+|+|.+..+.... +..+.+.......+......+.+|||||... +.. .....
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs-~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVT-PKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeecc-CCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 45679999999999999999999988764221 1112222222112223445789999999742 211 11234
Q ss_pred hcCCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEcCCC
Q 027382 85 YRGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN--LFFMETSALE 161 (224)
Q Consensus 85 ~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~ 161 (224)
+..+|++++|+|.++ ++.... .|+..+... +.|+++|+||+|+.+. ...++.+++...+ ..++++||++
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAkt 200 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALS 200 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccC
Confidence 789999999999765 333333 355555443 4677889999998642 2456666666554 5799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027382 162 ATNVETAFLTVLTEI 176 (224)
Q Consensus 162 ~~~v~~~~~~i~~~i 176 (224)
|.|++++|+++...+
T Consensus 201 g~gv~eL~~~L~~~l 215 (339)
T PRK15494 201 GKNIDGLLEYITSKA 215 (339)
T ss_pred ccCHHHHHHHHHHhC
Confidence 999999999987765
No 155
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.88 E-value=1.1e-21 Score=142.30 Aligned_cols=146 Identities=19% Similarity=0.201 Sum_probs=104.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhHhHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA--------VTSAYYR 86 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~ 86 (224)
++|+++|++|+|||||++++.+..... ...+............. ....+.+|||||...... .....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI--GGIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe--CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876432 22222222333333333 356789999999644321 2335677
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382 87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 166 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 166 (224)
.+|++++|+|++++.+......+.. ....|+++|+||+|+.+.... .....+.+++++|++++.|+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 9999999999998777666544332 236899999999998653322 334456789999999999999
Q ss_pred HHHHHHHHHH
Q 027382 167 TAFLTVLTEI 176 (224)
Q Consensus 167 ~~~~~i~~~i 176 (224)
+++.++...+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987643
No 156
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.88 E-value=3.4e-22 Score=147.97 Aligned_cols=155 Identities=20% Similarity=0.176 Sum_probs=104.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh----hh---hhHhHhcCCCEEE
Q 027382 20 LIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY----RA---VTSAYYRGAVGAM 92 (224)
Q Consensus 20 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~---~~~~~~~~~d~vi 92 (224)
++|++|||||||+++|.+........+..........+.+. ....+.+||+||.... .. .....++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 58999999999999999886422211111122222222222 1567899999996321 11 2234577899999
Q ss_pred EEEeCCCh------hhHHHHHHHHHHHHhcCC-------CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcC
Q 027382 93 LVYDMTKR------QSFDHMARWLDELRGHAD-------KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSA 159 (224)
Q Consensus 93 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (224)
+|+|++++ .++.....|...+..... ...|+++|+||+|+..................+..++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999987 477777777766654432 36899999999999654333222223444445677999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027382 160 LEATNVETAFLTVLTE 175 (224)
Q Consensus 160 ~~~~~v~~~~~~i~~~ 175 (224)
+++.|++++++++.+.
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999988754
No 157
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.88 E-value=1.5e-21 Score=146.05 Aligned_cols=156 Identities=19% Similarity=0.220 Sum_probs=111.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCc--------------ceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhH
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATI--------------GVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTS 82 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~ 82 (224)
+|+|+|.+|+|||||+++|++........... +.+.......+......+.+||+||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999877654432211 2222222233333467899999999998888899
Q ss_pred hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHHH-----------
Q 027382 83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTEDAQEFAQR----------- 149 (224)
Q Consensus 83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~----------- 149 (224)
.+++.+|++++|+|++++.... ...++..+.. .+.|+++++||+|+...... ..+++.+..+.
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 9999999999999998755433 2334444443 36999999999998642211 12333444433
Q ss_pred ---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 150 ---ENLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 150 ---~~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
...+++++|+++|.|++++|.++...+
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 246799999999999999999988764
No 158
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=8.6e-22 Score=148.16 Aligned_cols=158 Identities=16% Similarity=0.099 Sum_probs=101.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC----CCCCCc---c--CCcceeeEEEEEE----------ECCeEEEEEEEeCCChhh
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN----EFSVDS---K--ATIGVEFQTKTLS----------IDHKTVKAQIWDTAGQER 76 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~----~~~~~~---~--~~~~~~~~~~~~~----------~~~~~~~~~l~D~~G~~~ 76 (224)
++|+++|++++|||||+++|.+. .+...+ . .|.+.......+. ..+..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 111111 1 2222222222221 113367899999999876
Q ss_pred hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHH------
Q 027382 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--VPTEDAQEFAQ------ 148 (224)
Q Consensus 77 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~------ 148 (224)
+..........+|++++|+|+++.........+. +.... +.|+++++||+|+..... ...+++++...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 6444445567889999999998744333322222 11212 579999999999863221 11222322211
Q ss_pred -HcCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382 149 -RENLFFMETSALEATNVETAFLTVLTEIY 177 (224)
Q Consensus 149 -~~~~~~~~~s~~~~~~v~~~~~~i~~~i~ 177 (224)
..+++++++||++|.|++++++.+.+.+.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13568999999999999999999887763
No 159
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=1.5e-21 Score=142.22 Aligned_cols=141 Identities=13% Similarity=0.131 Sum_probs=99.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh----hhhhhhHhHhcCCCEEE
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE----RYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----~~~~~~~~~~~~~d~vi 92 (224)
+|+++|.+|+|||||+|+|.+... ....+ ..+.+... .+||+||.. .+.......++.+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cCccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999886432 11111 11222222 269999962 22222234478999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--eEEEEcCCCCCCHHHHHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL--FFMETSALEATNVETAFL 170 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~v~~~~~ 170 (224)
+|+|+++.++.. ..|+..+. .+.|+++++||+|+.+ ...+.+.+++.+.++ +++++||++|.|++++|+
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~~----~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDIG----VSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCccccc--CHHHHhcc----CCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 999999876542 23433321 2578999999999854 345667788888775 899999999999999999
Q ss_pred HHHHHHHHH
Q 027382 171 TVLTEIYRI 179 (224)
Q Consensus 171 ~i~~~i~~~ 179 (224)
.+.+.+.+.
T Consensus 141 ~l~~~~~~~ 149 (158)
T PRK15467 141 YLASLTKQE 149 (158)
T ss_pred HHHHhchhh
Confidence 988766443
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=9.6e-22 Score=166.34 Aligned_cols=155 Identities=23% Similarity=0.185 Sum_probs=106.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh--------hhhhhhHhHh
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE--------RYRAVTSAYY 85 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~ 85 (224)
...+|+|+|.+|||||||+|+|++....... .+.|.+.......+......+.+|||||.+ .+...+..++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 4578999999999999999999987653222 222444333333333344568899999965 2344566678
Q ss_pred cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCC
Q 027382 86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATN 164 (224)
Q Consensus 86 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 164 (224)
+.+|++|+|+|++++.+... ..+...+.. .+.|+++|+||+|+.... . +..++. ..++ .++++||++|.|
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~-~~~~~~-~~g~~~~~~iSA~~g~g 186 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---A-DAAALW-SLGLGEPHPVSALHGRG 186 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---h-hhHHHH-hcCCCCeEEEEcCCCCC
Confidence 99999999999998655432 334444443 369999999999986421 1 222222 2333 357999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027382 165 VETAFLTVLTEIYR 178 (224)
Q Consensus 165 v~~~~~~i~~~i~~ 178 (224)
++++|++++..+.+
T Consensus 187 i~eL~~~i~~~l~~ 200 (472)
T PRK03003 187 VGDLLDAVLAALPE 200 (472)
T ss_pred cHHHHHHHHhhccc
Confidence 99999999887744
No 161
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=1.1e-21 Score=142.48 Aligned_cols=146 Identities=16% Similarity=0.097 Sum_probs=98.4
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhHhHhcCCC
Q 027382 19 VLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA--------VTSAYYRGAV 89 (224)
Q Consensus 19 ~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~~d 89 (224)
+++|.+|+|||||+++|++..... ...+..+........ ......+.+|||||...+.. .+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEA--EWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEE--EECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999875321 112221222222222 23346799999999776432 3456678999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHH
Q 027382 90 GAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVETA 168 (224)
Q Consensus 90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~ 168 (224)
++++|+|+.++.+.... .+...+.+ .+.|+++|+||+|+.+... . .......+. +++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~----~-~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEED----E-AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHH----H-HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999875443322 22233332 2589999999999864221 1 233334555 6899999999999999
Q ss_pred HHHHHHH
Q 027382 169 FLTVLTE 175 (224)
Q Consensus 169 ~~~i~~~ 175 (224)
|+++++.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9998865
No 162
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.9e-21 Score=164.54 Aligned_cols=161 Identities=25% Similarity=0.195 Sum_probs=109.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCCh----------hhhhhhh
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ----------ERYRAVT 81 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~ 81 (224)
+..++|+++|.+|||||||+|+|++.... ....+..+.+.....+.+++. .+.+|||||. +.+..+.
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence 35799999999999999999999987643 233333333333444445443 5679999994 3333322
Q ss_pred -HhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHHHHH-HHHHcCCeEEEE
Q 027382 82 -SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTEDAQE-FAQRENLFFMET 157 (224)
Q Consensus 82 -~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~ 157 (224)
..+++.+|++++|+|++++.+..... ++..+.. .+.|+++|+||+|+.+.... ...++.+ +.....++++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 34678999999999999987776653 4444433 36899999999999642110 0111222 122234689999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHH
Q 027382 158 SALEATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 158 s~~~~~~v~~~~~~i~~~i~~~ 179 (224)
||++|.|++++|..+...+...
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998765433
No 163
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=2.1e-21 Score=147.20 Aligned_cols=159 Identities=18% Similarity=0.136 Sum_probs=102.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECC---------------------------------
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDH--------------------------------- 61 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------------------------- 61 (224)
++|+++|+.|+|||||+++|.+..... ......+.+.......+..
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 579999999999999999997642111 1111111121111111110
Q ss_pred eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--C
Q 027382 62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--P 139 (224)
Q Consensus 62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~ 139 (224)
....+.+|||||++.+...+...+..+|++++|+|++++.........+..+.... ..|+++|+||+|+.+.... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~--~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG--LKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC--CCcEEEEEEchhccCHHHHHHH
Confidence 12678999999999988888888899999999999987421112222223332221 2478999999998642111 1
Q ss_pred HHHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 140 TEDAQEFAQRE---NLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 140 ~~~~~~~~~~~---~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
.+++++++... +.+++++||++|+|++++|+.+.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 23344444433 56799999999999999999887644
No 164
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1.4e-20 Score=155.44 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=111.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCe-EEEEEEEeCCChhh-------hhhhhHhHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK-TVKAQIWDTAGQER-------YRAVTSAYYRGA 88 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~-------~~~~~~~~~~~~ 88 (224)
.|+++|.|+||||||+++|.+........+.. +.......+... ...+.+||+||... ....+...+..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfT--Tl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFT--TLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcc--eeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 79999999999999999999876443333322 222222222222 46799999999532 111222335579
Q ss_pred CEEEEEEeCCCh---hhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382 89 VGAMLVYDMTKR---QSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT 163 (224)
Q Consensus 89 d~vi~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (224)
+++++|+|+++. ++++....|...+..... .+.|+++|+||+|+.+ ..+.++++.+..+.+++++||+++.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 999999999864 566777777777765433 4689999999999843 2345667777777789999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027382 164 NVETAFLTVLTEIYRI 179 (224)
Q Consensus 164 ~v~~~~~~i~~~i~~~ 179 (224)
|++++++++.+.+.+.
T Consensus 314 GI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 314 GLDELLYAVAELLEET 329 (424)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999998776543
No 165
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.87 E-value=1.6e-20 Score=161.14 Aligned_cols=154 Identities=15% Similarity=0.173 Sum_probs=111.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
.+..+|+++|++++|||||+++|.+..+...+.+..+.+.....+.+.+. ..+.+|||||++.+..++...+..+|++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 35678999999999999999999988776555443334444444444222 27899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC---------CeEEEEcCCCCC
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN---------LFFMETSALEAT 163 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~ 163 (224)
+|+|+++...... .+.+..... .++|+++++||+|+.+ ...+++.+.+...+ .+++++||++|.
T Consensus 164 LVVda~dgv~~qT-~e~i~~~~~---~~vPiIVviNKiDl~~---~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 164 LVVAADDGVMPQT-IEAISHAKA---ANVPIIVAINKIDKPE---ANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEECCCCCCHhH-HHHHHHHHH---cCCCEEEEEECccccc---CCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 9999987322222 222222222 3689999999999864 23444444443332 469999999999
Q ss_pred CHHHHHHHHHH
Q 027382 164 NVETAFLTVLT 174 (224)
Q Consensus 164 ~v~~~~~~i~~ 174 (224)
|++++|+++..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999864
No 166
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=8e-21 Score=159.60 Aligned_cols=161 Identities=20% Similarity=0.182 Sum_probs=107.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh-----------hh
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA-----------VT 81 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----------~~ 81 (224)
...++|+++|.+++|||||+++|++........ ..+++.......+......+.+|||||...... ..
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~-~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSD-IAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCC-CCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 456899999999999999999999876432211 113333333333322344789999999543221 12
Q ss_pred HhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-H----cCCeEEE
Q 027382 82 SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-R----ENLFFME 156 (224)
Q Consensus 82 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~ 156 (224)
..+++.+|++|+|+|++++.+..... ++..+.+ .+.|+++|+||+|+.+ .....++..+... . ..+++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCceEE
Confidence 34688999999999999876655443 3333333 2689999999999962 1111222222222 2 2468999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHH
Q 027382 157 TSALEATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 157 ~s~~~~~~v~~~~~~i~~~i~~~ 179 (224)
+||++|.|+.++|+++.+.+.+.
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998766543
No 167
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.87 E-value=1.9e-20 Score=141.22 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=107.4
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh----------hhhhhh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ----------ERYRAV 80 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~ 80 (224)
..+..++|+++|.+|+|||||+++|.+..+...+.++.+.+........ ...+.+|||||. +.+..+
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 4567899999999999999999999987644444455555544333322 367999999993 344455
Q ss_pred hHhHhcCC---CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHHHcCCeEE
Q 027382 81 TSAYYRGA---VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTEDAQEFAQRENLFFM 155 (224)
Q Consensus 81 ~~~~~~~~---d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~ 155 (224)
...+++.+ +++++|+|.+++.+.... .+...+.. .+.|+++++||+|+.+.... ..+++.++......+++
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI 172 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 55566544 678888998775433221 11222222 26889999999998542221 12234444444467899
Q ss_pred EEcCCCCCCHHHHHHHHHHHH
Q 027382 156 ETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 156 ~~s~~~~~~v~~~~~~i~~~i 176 (224)
++|++++.|++++++.+...+
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHh
Confidence 999999999999999887654
No 168
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=7.3e-21 Score=141.54 Aligned_cols=151 Identities=17% Similarity=0.231 Sum_probs=101.2
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh----------hhhh
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ----------ERYR 78 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~ 78 (224)
+.+....++|+++|.+|+|||||+++|.+......+.++.+.+........+. .+.+||+||. ..+.
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence 34567888999999999999999999998764334444545555444343332 6899999994 2344
Q ss_pred hhhHhHhc---CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHcC--
Q 027382 79 AVTSAYYR---GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--VPTEDAQEFAQREN-- 151 (224)
Q Consensus 79 ~~~~~~~~---~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~-- 151 (224)
.+...+++ .++++++|+|++.+-+.... .++..+.. .+.|+++++||+|+.+... ...+++++.+...+
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~ 164 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD 164 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCC
Confidence 44445555 35799999999875443333 23333433 2689999999999864221 12344555555543
Q ss_pred CeEEEEcCCCCCCHH
Q 027382 152 LFFMETSALEATNVE 166 (224)
Q Consensus 152 ~~~~~~s~~~~~~v~ 166 (224)
..++++||++|+|++
T Consensus 165 ~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 165 PSVQLFSSLKKTGID 179 (179)
T ss_pred CceEEEECCCCCCCC
Confidence 479999999999973
No 169
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.87 E-value=3.7e-21 Score=161.35 Aligned_cols=149 Identities=19% Similarity=0.193 Sum_probs=107.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh--------hHhH
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV--------TSAY 84 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~ 84 (224)
..++|+++|.+|+|||||+|+|++.... ....+..+.+.....+.++ ...+.+|||||...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD--GIPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC--CeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999987642 2233332334444444453 456899999997543221 2346
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 027382 85 YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATN 164 (224)
Q Consensus 85 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (224)
+..+|++++|+|++++.+.+....|.. ..+.|+++|+||+|+.+..... ...+.+++++|+++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 789999999999999877665444432 2368999999999996432211 33456799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027382 165 VETAFLTVLTEIYR 178 (224)
Q Consensus 165 v~~~~~~i~~~i~~ 178 (224)
++++++++.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887643
No 170
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.86 E-value=1.9e-20 Score=136.94 Aligned_cols=156 Identities=17% Similarity=0.118 Sum_probs=103.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhHhHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY--------RAVTSAYYR 86 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~~~ 86 (224)
..+|+++|++|+|||||++++.+.......... ..+.......+......+.+||+||.... .......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP-QTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCC-CceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 568999999999999999999987654332222 12222222223344578899999995432 223455688
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEcCCCCCCH
Q 027382 87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN-LFFMETSALEATNV 165 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v 165 (224)
.+|++++|+|++++.+. ....+...+... +.|+++++||+|+........+....+....+ .+++++|++++.|+
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 99999999999986211 112222333322 58999999999986422222333344444443 57999999999999
Q ss_pred HHHHHHHHHH
Q 027382 166 ETAFLTVLTE 175 (224)
Q Consensus 166 ~~~~~~i~~~ 175 (224)
+++++.|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 171
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=2.1e-20 Score=137.71 Aligned_cols=154 Identities=21% Similarity=0.188 Sum_probs=100.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh----------h-hhhH
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY----------R-AVTS 82 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~-~~~~ 82 (224)
+++|+++|.+|+|||||++++++..... ...+.............+ ...+.+||+||.... . ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC--CeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5789999999999999999999876432 222221222222233333 345789999995322 1 1123
Q ss_pred hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-HHc----CCeEEEE
Q 027382 83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFA-QRE----NLFFMET 157 (224)
Q Consensus 83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-~~~----~~~~~~~ 157 (224)
..+..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+.+......+...+.. ... ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 356789999999999987665433 33333332 26899999999999654322222222222 222 3579999
Q ss_pred cCCCCCCHHHHHHHHHH
Q 027382 158 SALEATNVETAFLTVLT 174 (224)
Q Consensus 158 s~~~~~~v~~~~~~i~~ 174 (224)
|++++.|+.++++.+.+
T Consensus 156 Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 156 SALTGQGVDKLFDAIDE 172 (174)
T ss_pred eccCCCCHHHHHHHHHH
Confidence 99999999999998765
No 172
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.86 E-value=5.7e-21 Score=132.58 Aligned_cols=166 Identities=27% Similarity=0.517 Sum_probs=143.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
.-.+||.++|++..|||||+-.+.++...+.+..+.|..+..+++.+.+.++.+.+||.+|++++..+.+...+++-+++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 35689999999999999999999999998888888899999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC-----HHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP-----TEDAQEFAQRENLFFMETSALEATNVET 167 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 167 (224)
|+||++.++++..+..|+...+......+| ++|++|.|+--.-... ..+++.+++..++.++.+|+..+.|+..
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK 176 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence 999999999999999999988877665565 5679999962111111 1246678888999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 168 AFLTVLTEIYRI 179 (224)
Q Consensus 168 ~~~~i~~~i~~~ 179 (224)
+|.-+...+...
T Consensus 177 IFK~vlAklFnL 188 (205)
T KOG1673|consen 177 IFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHhCC
Confidence 999888777654
No 173
>PRK11058 GTPase HflX; Provisional
Probab=99.86 E-value=2e-20 Score=155.37 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=109.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh--hhhhh------HhHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER--YRAVT------SAYYR 86 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--~~~~~------~~~~~ 86 (224)
..+|+++|.+|||||||+|+|.+........++.+.+.....+.+.+ ...+.+|||+|... ....+ ...+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 36899999999999999999998765543333333444444444433 22678999999632 12222 23368
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEcCCCCCCH
Q 027382 87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNV 165 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v 165 (224)
.+|++++|+|++++.+...+..|...+......+.|+++|+||+|+.+... ..... ...+.+ ++.+||++|.|+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~~--~~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRIDR--DEENKPIRVWLSAQTGAGI 350 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHHH--HhcCCCceEEEeCCCCCCH
Confidence 999999999999988777766555555544444789999999999864211 11111 123445 588999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027382 166 ETAFLTVLTEIYRI 179 (224)
Q Consensus 166 ~~~~~~i~~~i~~~ 179 (224)
+++++++.+.+...
T Consensus 351 deL~e~I~~~l~~~ 364 (426)
T PRK11058 351 PLLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999887543
No 174
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=1.7e-20 Score=156.82 Aligned_cols=164 Identities=14% Similarity=0.076 Sum_probs=108.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhHhc
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSAYYR 86 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~ 86 (224)
....|+|+|.|+||||||+++|.+........+. +|.......+......+.+||+||... ........+.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypf--TTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPF--TTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCc--ccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 3457999999999999999999987654333332 222222222333446899999999421 1112233467
Q ss_pred CCCEEEEEEeCCCh----hhHHHHHHHHHHHHhcC-----------CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC
Q 027382 87 GAVGAMLVYDMTKR----QSFDHMARWLDELRGHA-----------DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN 151 (224)
Q Consensus 87 ~~d~vi~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~ 151 (224)
.+|++|+|+|+++. +.+..+..+...+.... ....|+++|+||+|+.+.... .+.........+
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g 314 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARG 314 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcC
Confidence 89999999999853 34444444443333221 136899999999999643322 223333444557
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382 152 LFFMETSALEATNVETAFLTVLTEIYRII 180 (224)
Q Consensus 152 ~~~~~~s~~~~~~v~~~~~~i~~~i~~~~ 180 (224)
.+++++||+++.|+++++.+|.+.+....
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 88999999999999999999988775543
No 175
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=4.5e-20 Score=160.81 Aligned_cols=157 Identities=18% Similarity=0.219 Sum_probs=111.6
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEE--EEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQT--KTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAV 89 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 89 (224)
.++..+|+|+|+.++|||||+++|....+.....+..+.+... .....++....+.+|||||++.|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 3466789999999999999999999877654433332222222 22223345688999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-------HHcC--CeEEEEcCC
Q 027382 90 GAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFA-------QREN--LFFMETSAL 160 (224)
Q Consensus 90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-------~~~~--~~~~~~s~~ 160 (224)
++|+|+|+++........ .+..+. ..++|+++++||+|+... ..+++.+.. ..++ ++++++||+
T Consensus 321 iaILVVDA~dGv~~QT~E-~I~~~k---~~~iPiIVViNKiDl~~~---~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk 393 (742)
T CHL00189 321 IAILIIAADDGVKPQTIE-AINYIQ---AANVPIIVAINKIDKANA---NTERIKQQLAKYNLIPEKWGGDTPMIPISAS 393 (742)
T ss_pred EEEEEEECcCCCChhhHH-HHHHHH---hcCceEEEEEECCCcccc---CHHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence 999999998743222222 222222 236899999999998642 233333222 2223 579999999
Q ss_pred CCCCHHHHHHHHHHH
Q 027382 161 EATNVETAFLTVLTE 175 (224)
Q Consensus 161 ~~~~v~~~~~~i~~~ 175 (224)
+|.|++++|+.+...
T Consensus 394 tG~GIdeLle~I~~l 408 (742)
T CHL00189 394 QGTNIDKLLETILLL 408 (742)
T ss_pred CCCCHHHHHHhhhhh
Confidence 999999999988765
No 176
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.85 E-value=3.7e-20 Score=159.55 Aligned_cols=157 Identities=15% Similarity=0.146 Sum_probs=112.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC---CCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNE---FSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
+.|+++|++++|||||+++|.+.. ++..+...++.+.....+..++ ..+.+||+||++.+...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 478999999999999999999743 3333334434444444444433 78999999999999888888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCC--CHHHHHHHHHHc----CCeEEEEcCCCCCCH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAV--PTEDAQEFAQRE----NLFFMETSALEATNV 165 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~s~~~~~~v 165 (224)
+|+|+++... ....+.+..+... ++| +++++||+|+.+.... ..+++++++... +.+++++|+++|.|+
T Consensus 79 LVVDa~~G~~-~qT~ehl~il~~l---gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI 154 (581)
T TIGR00475 79 LVVDADEGVM-TQTGEHLAVLDLL---GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGI 154 (581)
T ss_pred EEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCc
Confidence 9999997321 1222233333322 567 9999999999653321 123455666554 468999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027382 166 ETAFLTVLTEIYR 178 (224)
Q Consensus 166 ~~~~~~i~~~i~~ 178 (224)
++++..+...+..
T Consensus 155 ~eL~~~L~~l~~~ 167 (581)
T TIGR00475 155 GELKKELKNLLES 167 (581)
T ss_pred hhHHHHHHHHHHh
Confidence 9999988765543
No 177
>PRK00089 era GTPase Era; Reviewed
Probab=99.85 E-value=3.6e-20 Score=148.07 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=103.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhHhHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY--------RAVTSAYYR 86 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~~~ 86 (224)
.-.|+|+|.+|||||||+|+|++......+..+ .++..............+.+|||||.... .......+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~-~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP-QTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCC-CcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 456999999999999999999998764333222 11222111112224478999999995322 233445678
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEcCCCCCCH
Q 027382 87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN-LFFMETSALEATNV 165 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v 165 (224)
.+|++++|+|+++..+ ......+..+.. .+.|+++|+||+|+..........++.+....+ .+++++||+++.|+
T Consensus 84 ~~D~il~vvd~~~~~~-~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 84 DVDLVLFVVDADEKIG-PGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred cCCEEEEEEeCCCCCC-hhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 9999999999987211 112222333332 268999999999996322222334445555444 56999999999999
Q ss_pred HHHHHHHHHHH
Q 027382 166 ETAFLTVLTEI 176 (224)
Q Consensus 166 ~~~~~~i~~~i 176 (224)
+++++.+.+.+
T Consensus 160 ~~L~~~L~~~l 170 (292)
T PRK00089 160 DELLDVIAKYL 170 (292)
T ss_pred HHHHHHHHHhC
Confidence 99999988765
No 178
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.85 E-value=5.9e-20 Score=158.58 Aligned_cols=160 Identities=20% Similarity=0.242 Sum_probs=116.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCC-------CCc------cCCcceeeEEEEEEE-----CCeEEEEEEEeCCC
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFS-------VDS------KATIGVEFQTKTLSI-----DHKTVKAQIWDTAG 73 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~-------~~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~G 73 (224)
.+..-+++++|+.++|||||+.+|+...-. ..+ ....|.++....+.+ ++..+.+++|||||
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG 83 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG 83 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence 345668999999999999999999873211 111 112355555444433 34578999999999
Q ss_pred hhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027382 74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF 153 (224)
Q Consensus 74 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 153 (224)
+..+...+..++..+|++|+|+|+++.........|..... .++|+++|+||+|+.... ......++....++.
T Consensus 84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~ 157 (600)
T PRK05433 84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGID 157 (600)
T ss_pred cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCC
Confidence 99999999999999999999999998655555555544332 268999999999986422 122234454445553
Q ss_pred ---EEEEcCCCCCCHHHHHHHHHHHHH
Q 027382 154 ---FMETSALEATNVETAFLTVLTEIY 177 (224)
Q Consensus 154 ---~~~~s~~~~~~v~~~~~~i~~~i~ 177 (224)
++++||++|.|+.++++++.+.+.
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 899999999999999999887653
No 179
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.85 E-value=6.7e-21 Score=142.82 Aligned_cols=159 Identities=21% Similarity=0.249 Sum_probs=109.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc----------------cCCcceeeEEEEEEEC--CeEEEEEEEeCCChh
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDS----------------KATIGVEFQTKTLSID--HKTVKAQIWDTAGQE 75 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~ 75 (224)
..++|+++|+.++|||||+++|+........ ....+.+.......+. .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999999864422111 0011233333333333 677899999999999
Q ss_pred hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC-CCHHHHH-HHHHHc---
Q 027382 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA-VPTEDAQ-EFAQRE--- 150 (224)
Q Consensus 76 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~-~~~~~~--- 150 (224)
.+.......+..+|++|+|+|+.+.-.. ...+.+..+... ++|+++++||+|+...+. ...+++. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeeccccccc-cccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 9988888889999999999999875333 234444444443 688999999999862110 0011222 333333
Q ss_pred ---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 151 ---NLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 151 ---~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
.++++++||++|.|++++++.+.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 24799999999999999999888765
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.85 E-value=1.2e-19 Score=159.38 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=110.0
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
..+...|+|+|+.++|||||+++|....+.....+..+.+.....+.+ ....+.+|||||++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~--~~~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET--NGGKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE--CCEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 457788999999999999999999887765444333223333333333 346799999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHH-------HHHcC--CeEEEEcCCCC
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF-------AQREN--LFFMETSALEA 162 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~s~~~~ 162 (224)
|+|||+++...-.. .+.+.... ..++|+++++||+|+.+. +.+.+... ...++ ++++++||++|
T Consensus 365 ILVVdAddGv~~qT-~e~i~~a~---~~~vPiIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 365 VLVVAADDGVMPQT-IEAINHAK---AAGVPIIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEEEECCCCCCHhH-HHHHHHHH---hcCCcEEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 99999987322221 12222222 236999999999999642 22222221 22233 67999999999
Q ss_pred CCHHHHHHHHHHH
Q 027382 163 TNVETAFLTVLTE 175 (224)
Q Consensus 163 ~~v~~~~~~i~~~ 175 (224)
.|++++|+.+...
T Consensus 438 ~GI~eLle~I~~~ 450 (787)
T PRK05306 438 EGIDELLEAILLQ 450 (787)
T ss_pred CCchHHHHhhhhh
Confidence 9999999998753
No 181
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=8.7e-20 Score=149.96 Aligned_cols=160 Identities=15% Similarity=0.069 Sum_probs=110.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhHhcCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSAYYRGAV 89 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d 89 (224)
.|+|+|.|+||||||+|+|.+........+..+.....-.+.. .....+.++|+||... ........+..+|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~-~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRV-DDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEe-CCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 6999999999999999999987654333333222222222222 2234689999999532 1122234578999
Q ss_pred EEEEEEeCC---ChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEcCCCC
Q 027382 90 GAMLVYDMT---KRQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN--LFFMETSALEA 162 (224)
Q Consensus 90 ~vi~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~ 162 (224)
++++|+|++ +.+.++....|+..+..... .+.|+++|+||+|+.+...+ .+.++++....+ .+++++||+++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999998 44566767777777765432 36899999999998643222 234455555544 36899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 027382 163 TNVETAFLTVLTEIYR 178 (224)
Q Consensus 163 ~~v~~~~~~i~~~i~~ 178 (224)
.|++++++.|.+.+.+
T Consensus 319 ~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 319 LGVKELCWDLMTFIEE 334 (390)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 9999999999887754
No 182
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=5e-20 Score=154.99 Aligned_cols=146 Identities=22% Similarity=0.174 Sum_probs=102.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhHhHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER--------YRAVTSAYYR 86 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~ 86 (224)
.+|+++|.+|||||||+|+|.+.... ....+..+.+.......+++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 47999999999999999999987643 22222223333444444433 7899999999775 3334566788
Q ss_pred CCCEEEEEEeCCChhhH--HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCC
Q 027382 87 GAVGAMLVYDMTKRQSF--DHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEAT 163 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 163 (224)
.+|++++|+|++++.+. ..+..|+. +. +.|+++|+||+|+.+ ......++ ...++ .++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~~---~~piilv~NK~D~~~----~~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR---KS---NKPVILVVNKVDGPD----EEADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---Hc---CCcEEEEEECccCcc----chhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 99999999999874333 22334433 22 689999999999753 12233333 34455 38999999999
Q ss_pred CHHHHHHHHHH
Q 027382 164 NVETAFLTVLT 174 (224)
Q Consensus 164 ~v~~~~~~i~~ 174 (224)
|++++|+.+..
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999999886
No 183
>COG1159 Era GTPase [General function prediction only]
Probab=99.84 E-value=9.4e-20 Score=140.55 Aligned_cols=158 Identities=20% Similarity=0.151 Sum_probs=108.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh--------hhhhhhhHhHh
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ--------ERYRAVTSAYY 85 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--------~~~~~~~~~~~ 85 (224)
+.-.|+++|.|++|||||+|++.+......+.... +|+.....-+.....++.++||||- +.+.......+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~Q-TTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQ-TTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcc-hhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 45568999999999999999999998875554442 3333333334456889999999992 23344455667
Q ss_pred cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCC-eEEEEcCCCCC
Q 027382 86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-RENL-FFMETSALEAT 163 (224)
Q Consensus 86 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~-~~~~~s~~~~~ 163 (224)
..+|+++||+|++.+-.- ..+..++.+++ .+.|+++++||+|....... .....++.. .... .++++||++|.
T Consensus 84 ~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~-l~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 84 KDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTV-LLKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred ccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHH-HHHHHHHHHhhCCcceEEEeeccccC
Confidence 899999999999863222 22334444544 25899999999998653331 122333333 3333 58999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027382 164 NVETAFLTVLTEIY 177 (224)
Q Consensus 164 ~v~~~~~~i~~~i~ 177 (224)
|++.+.+.+...+.
T Consensus 159 n~~~L~~~i~~~Lp 172 (298)
T COG1159 159 NVDTLLEIIKEYLP 172 (298)
T ss_pred CHHHHHHHHHHhCC
Confidence 99988888776653
No 184
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=4.4e-19 Score=127.19 Aligned_cols=157 Identities=25% Similarity=0.399 Sum_probs=120.9
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC--------CccC----CcceeeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSV--------DSKA----TIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR 78 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~--------~~~~----~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 78 (224)
..-...||+|.|+.++||||+++++....... .+.. |+.+++.... + +.+..+++++||||+++.
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~--~-~~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE--L-DEDTGVHLFGTPGQERFK 82 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceE--E-cCcceEEEecCCCcHHHH
Confidence 34567899999999999999999999866421 1111 1122222211 1 334679999999999999
Q ss_pred hhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEEE
Q 027382 79 AVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE--NLFFME 156 (224)
Q Consensus 79 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~ 156 (224)
.+|..+.++++++|+++|.+.+..+ ..+..++.+.... .+|+++++||.|+.+ ..+.+++++..... +.+.++
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~ 157 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIE 157 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceee
Confidence 9999999999999999999998887 5566666665443 299999999999985 45677888877766 789999
Q ss_pred EcCCCCCCHHHHHHHHHHH
Q 027382 157 TSALEATNVETAFLTVLTE 175 (224)
Q Consensus 157 ~s~~~~~~v~~~~~~i~~~ 175 (224)
.++.++++..+.++.+...
T Consensus 158 ~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 158 IDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eecccchhHHHHHHHHHhh
Confidence 9999999999888777654
No 185
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=1.5e-19 Score=152.09 Aligned_cols=159 Identities=23% Similarity=0.241 Sum_probs=106.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh----------hh-hhh
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER----------YR-AVT 81 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~-~~~ 81 (224)
...++|+++|.+|+|||||+|+|++........ ..|.+.......+......+.+|||||... +. ...
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 457999999999999999999999866432221 124444444444434556788999999432 11 112
Q ss_pred HhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHH-HHHH----cCCeEEE
Q 027382 82 SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQE-FAQR----ENLFFME 156 (224)
Q Consensus 82 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~~ 156 (224)
..++..+|++|+|+|++++.+.... .++..+.+ .+.|+++++||+|+.+... ..+..+ +... ..+++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence 3467899999999999987665543 33333333 2689999999999863211 122221 1111 2468999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHH
Q 027382 157 TSALEATNVETAFLTVLTEIYR 178 (224)
Q Consensus 157 ~s~~~~~~v~~~~~~i~~~i~~ 178 (224)
+||++|.|++++|+.+......
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998865543
No 186
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=1.2e-19 Score=152.39 Aligned_cols=150 Identities=22% Similarity=0.190 Sum_probs=103.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh--------hhhhhhhHhHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ--------ERYRAVTSAYYRGA 88 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--------~~~~~~~~~~~~~~ 88 (224)
+|+++|.+|||||||+|+|.+....... ...|.+.......+...+..+.+|||||. +.+......+++.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVS-DTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceec-CCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 5899999999999999999987643221 12233333333333334557999999995 44556667788999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHH
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVET 167 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~ 167 (224)
|++++|+|+.++.+... ..+...+++ .+.|+++|+||+|+.+... ...++ ...++ +++++||++|.|+.+
T Consensus 80 d~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~----~~~~~-~~lg~~~~~~vSa~~g~gv~~ 150 (429)
T TIGR03594 80 DVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDA----VAAEF-YSLGFGEPIPISAEHGRGIGD 150 (429)
T ss_pred CEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCcccc----cHHHH-HhcCCCCeEEEeCCcCCChHH
Confidence 99999999987433322 122233333 2689999999999864332 12222 34565 699999999999999
Q ss_pred HHHHHHHHH
Q 027382 168 AFLTVLTEI 176 (224)
Q Consensus 168 ~~~~i~~~i 176 (224)
+++.+...+
T Consensus 151 ll~~i~~~l 159 (429)
T TIGR03594 151 LLDAILELL 159 (429)
T ss_pred HHHHHHHhc
Confidence 999988665
No 187
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.2e-20 Score=131.28 Aligned_cols=160 Identities=21% Similarity=0.333 Sum_probs=123.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCC------CC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhc
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNE------FS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYR 86 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~ 86 (224)
..+.|+++|..++|||||+.++...- .+ ....+++|.......+ ....+.+||.+|++..+++|..|+.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v----~~~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV----CNAPLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee----ccceeEEEEcCChHHHHHHHHHHHH
Confidence 45678999999999999999875421 11 2233455555444333 2567899999999999999999999
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH---H---cCCeEEEEcC
Q 027382 87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ---R---ENLFFMETSA 159 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~---~---~~~~~~~~s~ 159 (224)
.++++|+++|+++++-++.....++.+...- -.++|+++.+||.|+.+ .....+++.... . ...++.++||
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~--~~~~~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN--AMEAAELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh--hhhHHHHHHHhhhhhhcCCccCccccchh
Confidence 9999999999999999998888776665443 36899999999999874 334555655544 2 2357999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 027382 160 LEATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 160 ~~~~~v~~~~~~i~~~i~~~ 179 (224)
.+|+||.+...|++..+.+.
T Consensus 170 l~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 170 LTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhcccHHHHHHHHHHHHhhc
Confidence 99999999999998877554
No 188
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.83 E-value=1.3e-19 Score=156.39 Aligned_cols=145 Identities=19% Similarity=0.190 Sum_probs=105.4
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh------hHhHh--cCCCEEEE
Q 027382 22 GDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV------TSAYY--RGAVGAML 93 (224)
Q Consensus 22 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~------~~~~~--~~~d~vi~ 93 (224)
|.+|||||||+|++.+........+..+.+.....+.. .+..+++||+||...+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~--~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF--QGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE--CCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999988765555454344444444444 3456899999998766432 33333 37899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
|+|+++.+.. ..+...+. +.+.|+++++||+|+.+.+... .+.+++.+..+++++++||++|.|++++++.+.
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999874322 22222222 2369999999999986544443 457788888999999999999999999999998
Q ss_pred HH
Q 027382 174 TE 175 (224)
Q Consensus 174 ~~ 175 (224)
+.
T Consensus 152 ~~ 153 (591)
T TIGR00437 152 KA 153 (591)
T ss_pred HH
Confidence 65
No 189
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.4e-20 Score=133.69 Aligned_cols=161 Identities=31% Similarity=0.562 Sum_probs=140.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
..++++++|..|.||||++++++.+++...+.++.|.........-+...+.+..|||.|++.+..+...++=.+...|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 58999999999999999999999999999999999998887776666667999999999999999988888888889999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
+||++..-++.++.+|...+.+.++ ++|+++++||.|..... .....-.+.++.++.|+++|++.+-|...-|.++.
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La 165 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA 165 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHh
Confidence 9999999999999999999988776 69999999999986422 12234456667788999999999999999999998
Q ss_pred HHHH
Q 027382 174 TEIY 177 (224)
Q Consensus 174 ~~i~ 177 (224)
+.+.
T Consensus 166 rKl~ 169 (216)
T KOG0096|consen 166 RKLT 169 (216)
T ss_pred hhhc
Confidence 7763
No 190
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.82 E-value=2.6e-22 Score=143.27 Aligned_cols=170 Identities=35% Similarity=0.612 Sum_probs=145.6
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCe-EEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382 10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK-TVKAQIWDTAGQERYRAVTSAYYRGA 88 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~ 88 (224)
++.+..++++|+|.-|+|||+++.+++...+...|..++|.++..+...++.. .+++++||+.|++.+..+..-+++.+
T Consensus 20 ~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea 99 (229)
T KOG4423|consen 20 KKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEA 99 (229)
T ss_pred chhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCC
Confidence 34678999999999999999999999999999999999999988877766543 46889999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcC----CCCCcEEEEEeCCCCCCCCC-CCHHHHHHHHHHcCCe-EEEEcCCCC
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGHA----DKNIVIMLIGNKCDLGSLRA-VPTEDAQEFAQRENLF-FMETSALEA 162 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~-~~~~s~~~~ 162 (224)
.+.++|||++..-+++....|.+.+.... +..+|+++.+||+|...... .....+.+|++++++. ++++|+|.+
T Consensus 100 ~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ken 179 (229)
T KOG4423|consen 100 HGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKEN 179 (229)
T ss_pred cceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccc
Confidence 99999999999999999999998876544 25688999999999864222 2235688899999975 999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027382 163 TNVETAFLTVLTEIYRI 179 (224)
Q Consensus 163 ~~v~~~~~~i~~~i~~~ 179 (224)
.++.++...+++.+.-.
T Consensus 180 kni~Ea~r~lVe~~lvn 196 (229)
T KOG4423|consen 180 KNIPEAQRELVEKILVN 196 (229)
T ss_pred cChhHHHHHHHHHHHhh
Confidence 99999999888877543
No 191
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.82 E-value=7e-19 Score=155.24 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=115.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh----------hhHhH
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA----------VTSAY 84 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~~ 84 (224)
.++|+++|.+|||||||+|+|.+........ .|.++..+...+...+..+.+||+||...+.. ....+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 4689999999999999999999876543333 36666666666667778899999999765432 12233
Q ss_pred h--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 027382 85 Y--RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEA 162 (224)
Q Consensus 85 ~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 162 (224)
+ ..+|++++|+|+++.+... .+...+.+ .++|+++++||+|+.+.+.. ..+.+++.++.+++++++|++++
T Consensus 81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 3 4899999999999854422 23333433 26999999999998754444 35678888889999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027382 163 TNVETAFLTVLTEI 176 (224)
Q Consensus 163 ~~v~~~~~~i~~~i 176 (224)
+|++++.+.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999988877543
No 192
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.82 E-value=3.5e-19 Score=129.03 Aligned_cols=151 Identities=19% Similarity=0.158 Sum_probs=101.1
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-------hhhHhHhcCCCEE
Q 027382 20 LIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR-------AVTSAYYRGAVGA 91 (224)
Q Consensus 20 v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d~v 91 (224)
++|++|+|||||++++.+.... ....+............. .....+.+||+||..... .....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWEL-GPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEe-cCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987654 222222122222222222 125689999999965443 3445678999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHH---HHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTE---DAQEFAQRENLFFMETSALEATNVETA 168 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~v~~~ 168 (224)
++|+|++++....... +...... .+.|+++++||.|+......... .........+.+++++|++++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999876666554 3333322 37899999999998643322111 012223334578999999999999999
Q ss_pred HHHHHHH
Q 027382 169 FLTVLTE 175 (224)
Q Consensus 169 ~~~i~~~ 175 (224)
++.+.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998764
No 193
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=6.3e-19 Score=155.77 Aligned_cols=157 Identities=20% Similarity=0.178 Sum_probs=106.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChh----------hhhhh-h
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE----------RYRAV-T 81 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~-~ 81 (224)
..++|+++|.+|||||||+|+|++.... ....+..+.+.....+.+++. .+.+|||||.. .+..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4689999999999999999999998743 222232233333333444443 46799999942 22222 2
Q ss_pred HhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-H----cCCeEEE
Q 027382 82 SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-R----ENLFFME 156 (224)
Q Consensus 82 ~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~ 156 (224)
...++.+|++++|+|++++.+..... ++..+.+ .+.|+++|+||+|+.+... .+..++... . ...++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 34578999999999999877766654 3333333 3689999999999964221 222222222 1 1346799
Q ss_pred EcCCCCCCHHHHHHHHHHHHHH
Q 027382 157 TSALEATNVETAFLTVLTEIYR 178 (224)
Q Consensus 157 ~s~~~~~~v~~~~~~i~~~i~~ 178 (224)
+||++|.|++++|+.+.+.+.+
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999877654
No 194
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.82 E-value=1.8e-19 Score=123.20 Aligned_cols=155 Identities=24% Similarity=0.341 Sum_probs=116.8
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382 10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAV 89 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 89 (224)
.+..+.|+|+++|-.++|||||++.|.+.... .-.+|.|..... +.. ...+.+.+||.+|+...+..|..|+.+.|
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn~k~--v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd 87 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFNTKK--VEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVD 87 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcceEE--Eee-cCcEEEEEEecCCccccchhhhhhhhccc
Confidence 45678999999999999999999999876542 333444543333 322 45689999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--------CeEEEEcCC
Q 027382 90 GAMLVYDMTKRQSFDHMARWLDELRGH-ADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN--------LFFMETSAL 160 (224)
Q Consensus 90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~ 160 (224)
++|||+|.+|..-++++...+..+.+. .-..+|+++++||.|+.. +. ..++.+.+.+ ..+-++|+.
T Consensus 88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt--aa---~~eeia~klnl~~lrdRswhIq~csal 162 (185)
T KOG0074|consen 88 GLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT--AA---KVEEIALKLNLAGLRDRSWHIQECSAL 162 (185)
T ss_pred eEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh--hc---chHHHHHhcchhhhhhceEEeeeCccc
Confidence 999999999988888887765555443 336799999999999853 22 2333333332 246688999
Q ss_pred CCCCHHHHHHHHH
Q 027382 161 EATNVETAFLTVL 173 (224)
Q Consensus 161 ~~~~v~~~~~~i~ 173 (224)
+++|+.+-.+++.
T Consensus 163 s~eg~~dg~~wv~ 175 (185)
T KOG0074|consen 163 SLEGSTDGSDWVQ 175 (185)
T ss_pred cccCccCcchhhh
Confidence 9999888777765
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=6.9e-19 Score=155.52 Aligned_cols=155 Identities=23% Similarity=0.165 Sum_probs=106.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhHhHh
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER--------YRAVTSAYY 85 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~ 85 (224)
...+|+++|.++||||||+|+|++...... ....|.+..............+.+|||||.+. +......++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv-~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVV-EDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 457899999999999999999998764322 22335555544444444456789999999552 344456678
Q ss_pred cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCC
Q 027382 86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATN 164 (224)
Q Consensus 86 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 164 (224)
..+|++|||+|+++.-... -..|...++. .+.|+++|+||+|+... .....++.. .+. ..+++||++|.|
T Consensus 353 ~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~---~~~pvIlV~NK~D~~~~----~~~~~~~~~-lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTST-DERIVRMLRR---AGKPVVLAVNKIDDQAS----EYDAAEFWK-LGLGEPYPISAMHGRG 423 (712)
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHh---cCCCEEEEEECcccccc----hhhHHHHHH-cCCCCeEEEECCCCCC
Confidence 9999999999998632211 1234444443 37999999999998532 122233322 232 367999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027382 165 VETAFLTVLTEIYR 178 (224)
Q Consensus 165 v~~~~~~i~~~i~~ 178 (224)
++++|+++++.+..
T Consensus 424 I~eLl~~i~~~l~~ 437 (712)
T PRK09518 424 VGDLLDEALDSLKV 437 (712)
T ss_pred chHHHHHHHHhccc
Confidence 99999999887643
No 196
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=4.2e-19 Score=152.83 Aligned_cols=156 Identities=16% Similarity=0.230 Sum_probs=115.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC--CCCCCc------------cCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhH
Q 027382 17 KVVLIGDSAVGKSQLLARFARN--EFSVDS------------KATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTS 82 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~ 82 (224)
+|+++|+.++|||||+++|+.. .+.... ....|.++......+.+..+.+.+|||||+..|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999863 221111 12236677776666777789999999999999999999
Q ss_pred hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHH-------HcCCeE
Q 027382 83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV-PTEDAQEFAQ-------RENLFF 154 (224)
Q Consensus 83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~~ 154 (224)
.+++.+|++++|+|+++. .......|+..+... ++|+++|+||+|+.+.+.. ...++.++.. ...+++
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 999999999999999873 334455666655543 6899999999998653321 1233444442 235679
Q ss_pred EEEcCCCCC----------CHHHHHHHHHHHH
Q 027382 155 METSALEAT----------NVETAFLTVLTEI 176 (224)
Q Consensus 155 ~~~s~~~~~----------~v~~~~~~i~~~i 176 (224)
+.+||++|. |+..+|+.+++.+
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 999999996 7888888777665
No 197
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=1.7e-19 Score=146.41 Aligned_cols=150 Identities=22% Similarity=0.171 Sum_probs=107.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhHhHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER---------YRAVTSAYYR 86 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~~ 86 (224)
..|+++|.|+||||||.|+|.+.......+.+ |.|+........+.+..+.++||+|-+. ........+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~p-GvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTP-GVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCC-CCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 46999999999999999999998876554443 5555555545555666799999999432 2344566688
Q ss_pred CCCEEEEEEeCCChhh--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 027382 87 GAVGAMLVYDMTKRQS--FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATN 164 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (224)
.||++|||+|....-+ -+.+.+++ ++ .+.|+++|+||+|... ..+...+|...--..++.+||..|.|
T Consensus 83 eADvilfvVD~~~Git~~D~~ia~~L---r~---~~kpviLvvNK~D~~~----~e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 83 EADVILFVVDGREGITPADEEIAKIL---RR---SKKPVILVVNKIDNLK----AEELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHH---Hh---cCCCEEEEEEcccCch----hhhhHHHHHhcCCCCceEeehhhccC
Confidence 9999999999986322 23333333 32 2699999999999641 22334444443334699999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 165 VETAFLTVLTEI 176 (224)
Q Consensus 165 v~~~~~~i~~~i 176 (224)
+.++++.++..+
T Consensus 153 i~dLld~v~~~l 164 (444)
T COG1160 153 IGDLLDAVLELL 164 (444)
T ss_pred HHHHHHHHHhhc
Confidence 999999988765
No 198
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.81 E-value=9.1e-19 Score=132.62 Aligned_cols=117 Identities=21% Similarity=0.331 Sum_probs=87.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC-CEEEEEE
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA-VGAMLVY 95 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~-d~vi~v~ 95 (224)
+|+++|++|||||||+++|....+...+.++ .................+.+||+||+..++..+..+++.+ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999988765443322 2222221111123467899999999999999999999999 9999999
Q ss_pred eCCCh-hhHHHHHHHHHHHHh---cCCCCCcEEEEEeCCCCCC
Q 027382 96 DMTKR-QSFDHMARWLDELRG---HADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 96 d~~~~-~s~~~~~~~~~~~~~---~~~~~~p~ilv~nK~D~~~ 134 (224)
|+++. .++..+..|+..+.. .....+|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99997 677777666544322 1225799999999999864
No 199
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.81 E-value=4e-18 Score=131.61 Aligned_cols=151 Identities=24% Similarity=0.222 Sum_probs=101.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------hhhhHhHhcCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY-------RAVTSAYYRGAV 89 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~~d 89 (224)
+|+++|.+|+|||||+++|.+........+..+.+.....+.+ ....+++||+||.... ......+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY--KGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE--CCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 7899999999999999999987643332222222222222333 4568999999996422 223456789999
Q ss_pred EEEEEEeCCChh-hHHHHHHHHHHH-----------------------------------------Hh------------
Q 027382 90 GAMLVYDMTKRQ-SFDHMARWLDEL-----------------------------------------RG------------ 115 (224)
Q Consensus 90 ~vi~v~d~~~~~-s~~~~~~~~~~~-----------------------------------------~~------------ 115 (224)
++++|+|+++++ ....+.+.+..+ .+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998755 344333333211 00
Q ss_pred ------------cCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 116 ------------HADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 116 ------------~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
.....+|+++|+||+|+. ..+++..++.. ..++++||+++.|++++|+.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 001236899999999984 34556666544 3589999999999999999888654
No 200
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=3.6e-19 Score=135.44 Aligned_cols=149 Identities=23% Similarity=0.188 Sum_probs=98.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCc-----------------------------cCCcceeeEEEEEEECCeEEEEE
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDS-----------------------------KATIGVEFQTKTLSIDHKTVKAQ 67 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 67 (224)
||+++|++++|||||+++|+...-.... ....|.+.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999864322110 00024455555555556677899
Q ss_pred EEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC----CHHHH
Q 027382 68 IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV----PTEDA 143 (224)
Q Consensus 68 l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~~~~~ 143 (224)
+|||||+..+.......++.+|++++|+|++++..-. .......+... . ..++++|+||+|+...... ...++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 9999999888766777789999999999998743221 22222222222 1 2357889999998642211 12344
Q ss_pred HHHHHHcCC---eEEEEcCCCCCCHHHH
Q 027382 144 QEFAQRENL---FFMETSALEATNVETA 168 (224)
Q Consensus 144 ~~~~~~~~~---~~~~~s~~~~~~v~~~ 168 (224)
+++....+. +++++||++|.|+.+.
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 555566663 4899999999998743
No 201
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=1.8e-18 Score=148.93 Aligned_cols=159 Identities=14% Similarity=0.193 Sum_probs=115.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC--CCCCCc------------cCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARN--EFSVDS------------KATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA 79 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 79 (224)
...+|+++|+.++|||||+++|+.. .+...+ ..+.+.++......+.+..+.+.+|||||+..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 4568999999999999999999973 222211 23457777777777888889999999999999999
Q ss_pred hhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC-CCHHHHHHHHHH-------cC
Q 027382 80 VTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA-VPTEDAQEFAQR-------EN 151 (224)
Q Consensus 80 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~-~~~~~~~~~~~~-------~~ 151 (224)
.+..+++.+|++|+|+|+++..... .+.++..+.. .++|.++++||+|+...+. ...+++.++... ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 9999999999999999998743322 3333333333 2688999999999864332 112334444322 34
Q ss_pred CeEEEEcCCCCC----------CHHHHHHHHHHHH
Q 027382 152 LFFMETSALEAT----------NVETAFLTVLTEI 176 (224)
Q Consensus 152 ~~~~~~s~~~~~----------~v~~~~~~i~~~i 176 (224)
++++.+||++|. ++..+|+.+++.+
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 679999999998 4677776666554
No 202
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.81 E-value=3.2e-19 Score=149.45 Aligned_cols=157 Identities=18% Similarity=0.148 Sum_probs=107.0
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc-----------------------------cCCcceeeEEEEEEECCe
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS-----------------------------KATIGVEFQTKTLSIDHK 62 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 62 (224)
....++|+++|++++|||||+++|+...-.... ....|++.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 346799999999999999999999853221100 012366666666667777
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhH-HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC----
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSF-DHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA---- 137 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---- 137 (224)
.+.+.+|||||++.+.......+..+|++++|+|++++.++ .....++..+... . ..|+++++||+|+.+...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHHHH
Confidence 88999999999987766556667899999999999873122 1122222223222 1 246899999999964211
Q ss_pred CCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHH
Q 027382 138 VPTEDAQEFAQREN-----LFFMETSALEATNVETAFL 170 (224)
Q Consensus 138 ~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~~ 170 (224)
...+++.+++...+ .+++++||++|.|+.+.+.
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 11234556665554 4699999999999987543
No 203
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.81 E-value=5.2e-19 Score=148.18 Aligned_cols=157 Identities=15% Similarity=0.106 Sum_probs=108.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCC--CCCC---------------------------ccCCcceeeEEEEEEECCe
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNE--FSVD---------------------------SKATIGVEFQTKTLSIDHK 62 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 62 (224)
....++|+++|+.++|||||+.+|+... .... .....|.+.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 4567999999999999999999998621 1100 0011255555555666677
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC---
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFD--HMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--- 137 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--- 137 (224)
.+.+.+||+||++.+.......+..+|++++|+|+++.++.. ....++..... .. ..|+++++||+|+.+...
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-~~-~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART-LG-INQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-cC-CCeEEEEEEChhccCccHHHH
Confidence 789999999999988776777788999999999999864321 11122222222 22 357899999999964221
Q ss_pred -CCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHH
Q 027382 138 -VPTEDAQEFAQREN-----LFFMETSALEATNVETAFL 170 (224)
Q Consensus 138 -~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~~ 170 (224)
....+++++++..+ ++++++||++|.|+.+.+.
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 11345566776655 5799999999999987543
No 204
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.81 E-value=2.5e-18 Score=129.09 Aligned_cols=148 Identities=20% Similarity=0.165 Sum_probs=103.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCC------C--------CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFS------V--------DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV 80 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 80 (224)
.++|+++|+.++|||||+++|++.... . ......|.+.......+......+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 479999999999999999999864110 0 00112356666666667777788999999999988877
Q ss_pred hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHc-----C
Q 027382 81 TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAV---PTEDAQEFAQRE-----N 151 (224)
Q Consensus 81 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~-----~ 151 (224)
....+..+|++++|+|+...-. ...+..+..+... ++| +++++||+|+...... ..++++++.... +
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 8888899999999999986422 2233344444433 466 7789999998532211 122455555544 3
Q ss_pred CeEEEEcCCCCCCHH
Q 027382 152 LFFMETSALEATNVE 166 (224)
Q Consensus 152 ~~~~~~s~~~~~~v~ 166 (224)
++++++||++|.|+.
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 679999999998853
No 205
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.80 E-value=2.8e-18 Score=125.72 Aligned_cols=150 Identities=17% Similarity=0.245 Sum_probs=98.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh----------hhhhhhHhHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE----------RYRAVTSAYYR 86 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~~ 86 (224)
.|+++|.+|+|||||++.+.+........++.+.+........+. .+.+||+||.. .+......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996555554555555555444443433 88999999932 23444444444
Q ss_pred ---CCCEEEEEEeCCChh--hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHH--HcCCeEEEE
Q 027382 87 ---GAVGAMLVYDMTKRQ--SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTEDAQEFAQ--RENLFFMET 157 (224)
Q Consensus 87 ---~~d~vi~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~ 157 (224)
..+++++++|..... ....+..|+... +.|+++++||+|+...... .........+ ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 457889999997642 222333444322 4889999999998532211 1122222232 234578999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 027382 158 SALEATNVETAFLTVLTE 175 (224)
Q Consensus 158 s~~~~~~v~~~~~~i~~~ 175 (224)
|++++.++.++++.+.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 206
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.80 E-value=1.8e-18 Score=143.73 Aligned_cols=165 Identities=20% Similarity=0.186 Sum_probs=105.6
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc-cCCcceeeEEEEE--E------------------EC------Ce
Q 027382 10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTKTL--S------------------ID------HK 62 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~--~------------------~~------~~ 62 (224)
++.+..++|+++|+.++|||||+.+|.+....... ....|.+...... . ++ ..
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 45667799999999999999999999653211110 0011222221100 0 00 01
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CH
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PT 140 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~ 140 (224)
...+.+||+||++.+..........+|++++|+|++++.........+..+.... ..|+++|+||+|+.+.... ..
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIG--IKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEEeeccccchhHHHHH
Confidence 3678999999999887766667778899999999996431112222222333221 2468999999999653221 12
Q ss_pred HHHHHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 141 EDAQEFAQRE---NLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 141 ~~~~~~~~~~---~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
++++.++... +.+++++||++|.|++++++.|...+
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 3445555432 46899999999999999999887654
No 207
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.80 E-value=5.3e-18 Score=145.58 Aligned_cols=154 Identities=17% Similarity=0.144 Sum_probs=100.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccC----CcceeeEEEEE------------EECCeEEEEEEEeCCChhhhhhh
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKA----TIGVEFQTKTL------------SIDHKTVKAQIWDTAGQERYRAV 80 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~------------~~~~~~~~~~l~D~~G~~~~~~~ 80 (224)
-|+++|++++|||||+++|.+..+...... +.|.+...... .++.....+.+|||||++.+..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 489999999999999999998766432222 11221111100 00001123889999999999999
Q ss_pred hHhHhcCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC------------CHHHH--
Q 027382 81 TSAYYRGAVGAMLVYDMTK---RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV------------PTEDA-- 143 (224)
Q Consensus 81 ~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~------------~~~~~-- 143 (224)
+..++..+|++++|+|+++ +.+++.+. .+.. .++|+++++||+|+.+.... ....+
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 9999999999999999987 34433322 2222 26899999999998632100 00000
Q ss_pred ----------HHHHH------------Hc--CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382 144 ----------QEFAQ------------RE--NLFFMETSALEATNVETAFLTVLTEIY 177 (224)
Q Consensus 144 ----------~~~~~------------~~--~~~~~~~s~~~~~~v~~~~~~i~~~i~ 177 (224)
.++.. .. .++++++||++|+|+++++.++.....
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 01111 11 257999999999999999998875443
No 208
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=2.8e-18 Score=139.39 Aligned_cols=168 Identities=23% Similarity=0.230 Sum_probs=119.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh---------hh--hhH
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY---------RA--VTS 82 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~--~~~ 82 (224)
..++|+++|.|++|||||+|+|++..-...+.-+ |+++......+......+.++||.|-..- .+ -..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~a-GTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIA-GTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCC-CccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 5799999999999999999999998765444443 78888888888778888999999992221 11 123
Q ss_pred hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH----c-CCeEEEE
Q 027382 83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR----E-NLFFMET 157 (224)
Q Consensus 83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~----~-~~~~~~~ 157 (224)
..+..+|.+++|+|++.+-+-+.. +....+.+. +.++++++||+|+.+......++.++-... . .++.+.+
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~~---g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDL-RIAGLIEEA---GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHH-HHHHHHHHc---CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 446789999999999976544432 233333332 688999999999976543444444333222 2 3579999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcccCCc
Q 027382 158 SALEATNVETAFLTVLTEIYRIISKKSLTA 187 (224)
Q Consensus 158 s~~~~~~v~~~~~~i~~~i~~~~~~~~~~~ 187 (224)
||+++.+++++|+.+.. +++....+..++
T Consensus 332 SA~~~~~i~~l~~~i~~-~~~~~~~ri~Ts 360 (444)
T COG1160 332 SALTGQGLDKLFEAIKE-IYECATRRISTS 360 (444)
T ss_pred EecCCCChHHHHHHHHH-HHHHhccccCHH
Confidence 99999999999999774 444444443443
No 209
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.80 E-value=1.7e-18 Score=143.95 Aligned_cols=162 Identities=19% Similarity=0.164 Sum_probs=106.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc-cCCcceeeEEE--------------------EEEECC------eEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTK--------------------TLSIDH------KTVK 65 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~--------------------~~~~~~------~~~~ 65 (224)
...++|+++|++++|||||+++|.+....... ....+.+.... ...++. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 35689999999999999999999753221100 00001111111 000011 1467
Q ss_pred EEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHHH
Q 027382 66 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTEDA 143 (224)
Q Consensus 66 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~ 143 (224)
+.+||+||++.+...+......+|++++|+|++++.......+.+..+.... ..|+++++||+|+.+.... ..+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 8999999999998888888899999999999996431223333333333221 2468999999998642211 12344
Q ss_pred HHHHHHc---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 144 QEFAQRE---NLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 144 ~~~~~~~---~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
.++.... +.+++++||++|+|++++++.|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 4444433 56899999999999999999887654
No 210
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.79 E-value=4e-18 Score=119.62 Aligned_cols=134 Identities=24% Similarity=0.268 Sum_probs=97.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC----hhhhhhhhHhHhcCCCEEE
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG----QERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~vi 92 (224)
||+++|+.|||||||+++|.+... .+..|.... + .-.++|||| +..+.........+||.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~-------~-----~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIE-------Y-----YDNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeE-------e-----cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999998664 333332111 1 124599999 4445555556667999999
Q ss_pred EEEeCCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHH
Q 027382 93 LVYDMTKRQS-FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNVETAFL 170 (224)
Q Consensus 93 ~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~~~~ 170 (224)
+|.|++++.+ +.. .+... .+.|+|-|+||+|+.. .....+.++++.+.-|+. +|++|+.+|+|++++.+
T Consensus 69 ll~dat~~~~~~pP------~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 69 LLQDATEPRSVFPP------GFASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred EEecCCCCCccCCc------hhhcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence 9999998543 221 11222 2589999999999973 234567788888888874 89999999999999988
Q ss_pred HHH
Q 027382 171 TVL 173 (224)
Q Consensus 171 ~i~ 173 (224)
.|-
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 763
No 211
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.79 E-value=3.2e-18 Score=139.41 Aligned_cols=157 Identities=20% Similarity=0.194 Sum_probs=113.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh--------hHh
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV--------TSA 83 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~ 83 (224)
-+.-++++++|.||+|||||+|+|++........-+ |+|+......++-.++.++++||.|..+.... ...
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~-GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIA-GTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCC-CCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 456789999999999999999999998876554444 67777777777778889999999994433221 234
Q ss_pred HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382 84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT 163 (224)
Q Consensus 84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (224)
.+..||.++||+|.+.+.+-.... .+. ....+.|+++|.||.|+...... .......+.+++.+|+++++
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~-~~~----~~~~~~~~i~v~NK~DL~~~~~~-----~~~~~~~~~~~i~iSa~t~~ 362 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLA-LIE----LLPKKKPIIVVLNKADLVSKIEL-----ESEKLANGDAIISISAKTGE 362 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHH-HHH----hcccCCCEEEEEechhccccccc-----chhhccCCCceEEEEecCcc
Confidence 578999999999999852222111 111 23347899999999999753331 11111233468999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027382 164 NVETAFLTVLTEIYRI 179 (224)
Q Consensus 164 ~v~~~~~~i~~~i~~~ 179 (224)
|++.+.+.|...+...
T Consensus 363 Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 363 GLDALREAIKQLFGKG 378 (454)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999988888776554
No 212
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=1.2e-17 Score=129.21 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=84.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-------------c---cCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVD-------------S---KATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV 80 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 80 (224)
+|+++|+.|+|||||+++|+...-... + ....+.++......+.+....+.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999987421110 0 112244455555556667789999999999999888
Q ss_pred hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382 81 TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133 (224)
Q Consensus 81 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 133 (224)
+..+++.+|++++|+|+++.... ....++..+.+. ++|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence 89999999999999999985433 344555555443 68999999999985
No 213
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.78 E-value=1e-18 Score=133.91 Aligned_cols=148 Identities=18% Similarity=0.152 Sum_probs=98.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-----------------------------CccCCcceeeEEEEEEECCeEEEEE
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSV-----------------------------DSKATIGVEFQTKTLSIDHKTVKAQ 67 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (224)
+|+++|+.++|||||+.+|+...-.. ......|++.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999997531100 0001125556656666666778999
Q ss_pred EEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhh------HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC--CCCC
Q 027382 68 IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS------FDHMARWLDELRGHADKNIVIMLIGNKCDLGSL--RAVP 139 (224)
Q Consensus 68 l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~ 139 (224)
+||+||+..+...+...+..+|++|+|+|+++... .......+...... . ..|+++++||+|+... ....
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-G-VKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-C-CCeEEEEEEccccccccccHHH
Confidence 99999998887777777889999999999998421 11222222222222 1 3679999999999632 1111
Q ss_pred ----HHHHHHHHHHcC-----CeEEEEcCCCCCCHH
Q 027382 140 ----TEDAQEFAQREN-----LFFMETSALEATNVE 166 (224)
Q Consensus 140 ----~~~~~~~~~~~~-----~~~~~~s~~~~~~v~ 166 (224)
.++++.+....+ .+++++||++|.|++
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 122333444443 569999999999976
No 214
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.9e-19 Score=123.44 Aligned_cols=167 Identities=20% Similarity=0.313 Sum_probs=124.2
Q ss_pred cccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHh
Q 027382 4 LYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSA 83 (224)
Q Consensus 4 ~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 83 (224)
++..++.+. ...+|+++|-.|+||||++.++.-.+. ....|+.|..... +.++...+++||.+|+-..+..|+-
T Consensus 8 ~f~~L~g~e-~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRc 81 (182)
T KOG0072|consen 8 LFKALQGPE-REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRC 81 (182)
T ss_pred HHHHhcCCc-cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCccc----cccccccceeeEccCcccccHHHHH
Confidence 344555544 889999999999999999999876665 3445665655544 4458889999999999999999999
Q ss_pred HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHh-cCCCCCcEEEEEeCCCCCCCCCCCHHHHH-HH----HHHcCCeEEEE
Q 027382 84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRG-HADKNIVIMLIGNKCDLGSLRAVPTEDAQ-EF----AQRENLFFMET 157 (224)
Q Consensus 84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~~~ 157 (224)
|+.+.|++|||+|.+|.+.+.-....+-.+.+ ..-.+..+++++||.|....- ...|+. .+ .+..-..++++
T Consensus 82 Yy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~--t~~E~~~~L~l~~Lk~r~~~Iv~t 159 (182)
T KOG0072|consen 82 YYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL--TRSEVLKMLGLQKLKDRIWQIVKT 159 (182)
T ss_pred HhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh--hHHHHHHHhChHHHhhheeEEEee
Confidence 99999999999999998887777665544433 222457789999999985421 122221 11 11122468999
Q ss_pred cCCCCCCHHHHHHHHHHHHHH
Q 027382 158 SALEATNVETAFLTVLTEIYR 178 (224)
Q Consensus 158 s~~~~~~v~~~~~~i~~~i~~ 178 (224)
||.+|+|++.+++|+.+.+.+
T Consensus 160 SA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 160 SAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred ccccccCCcHHHHHHHHHHhc
Confidence 999999999999999987643
No 215
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.78 E-value=1.6e-17 Score=143.78 Aligned_cols=154 Identities=15% Similarity=0.096 Sum_probs=103.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC---CCCccCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEF---SVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
-|+++|+.++|||||+++|.+... ...... |++.......+. .....+.+||+||++.+.......+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~r--GiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKR--GMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccC--CceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 488999999999999999986432 222222 333332222221 12345899999999999877788889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCC--CHHHHHHHHHHcC---CeEEEEcCCCCCCHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAV--PTEDAQEFAQREN---LFFMETSALEATNVE 166 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~s~~~~~~v~ 166 (224)
+|+|+++.. .....+.+..+... ++| +++|+||+|+.+.... ..+++.+++...+ .+++++|+++|.|++
T Consensus 80 LVVda~eg~-~~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 80 LVVACDDGV-MAQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEEECCCCC-cHHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 999998732 12223333333322 345 5799999998642211 1234555555544 579999999999999
Q ss_pred HHHHHHHHHH
Q 027382 167 TAFLTVLTEI 176 (224)
Q Consensus 167 ~~~~~i~~~i 176 (224)
++++.|....
T Consensus 156 ~L~~~L~~~~ 165 (614)
T PRK10512 156 ALREHLLQLP 165 (614)
T ss_pred HHHHHHHHhh
Confidence 9998887543
No 216
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.77 E-value=4.1e-17 Score=140.58 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=100.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccC----CcceeeEEEEEE--ECCeE-----E-----EEEEEeCCChhhh
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKA----TIGVEFQTKTLS--IDHKT-----V-----KAQIWDTAGQERY 77 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~~~l~D~~G~~~~ 77 (224)
+...|+++|++++|||||+++|.+......... +.|.+....... ..+.. . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 334699999999999999999987654322221 112111111000 00111 1 2689999999999
Q ss_pred hhhhHhHhcCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--C----------HH-
Q 027382 78 RAVTSAYYRGAVGAMLVYDMTK---RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--P----------TE- 141 (224)
Q Consensus 78 ~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~----------~~- 141 (224)
..++...+..+|++++|+|+++ +.+++.+. .+.. .++|+++++||+|+...... . ..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9998888999999999999987 44444332 2222 26899999999998521110 0 00
Q ss_pred ----------HHHHHHHHc---------------CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 142 ----------DAQEFAQRE---------------NLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 142 ----------~~~~~~~~~---------------~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
++..+.... .++++++||++|.|+++++..+....
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 011111211 25689999999999999998876543
No 217
>PRK12735 elongation factor Tu; Reviewed
Probab=99.77 E-value=2e-17 Score=137.10 Aligned_cols=154 Identities=17% Similarity=0.171 Sum_probs=105.9
Q ss_pred CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCC-----C---------CCccCCcceeeEEEEEEECCeEEEEEEEeCC
Q 027382 7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEF-----S---------VDSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72 (224)
Q Consensus 7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 72 (224)
+..++....++|+++|++++|||||+++|++... . .......|.+.......+......+.++|||
T Consensus 4 ~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtP 83 (396)
T PRK12735 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCP 83 (396)
T ss_pred hhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECC
Confidence 3456678889999999999999999999986210 0 0011123566666666666667789999999
Q ss_pred ChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEE-EEEeCCCCCCCCCC---CHHHHHHHHH
Q 027382 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAV---PTEDAQEFAQ 148 (224)
Q Consensus 73 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~~---~~~~~~~~~~ 148 (224)
|+..+.......+..+|++++|+|+.+... ....+++..+... ++|.+ +++||+|+.+.... ...+++.+..
T Consensus 84 Gh~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~---gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 84 GHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 999887777777889999999999987322 2233444444432 57755 57999999642211 1124555665
Q ss_pred HcC-----CeEEEEcCCCCCC
Q 027382 149 REN-----LFFMETSALEATN 164 (224)
Q Consensus 149 ~~~-----~~~~~~s~~~~~~ 164 (224)
.++ ++++++|+++|.|
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HcCCCcCceeEEecchhcccc
Confidence 543 6799999999853
No 218
>PRK12736 elongation factor Tu; Reviewed
Probab=99.77 E-value=2.1e-17 Score=136.99 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=103.2
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC--------------CccCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSV--------------DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 76 (224)
.....++|+++|+.++|||||+++|++..... ......|.+.......+......+.++|+||++.
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence 45678999999999999999999998632100 0011235666666666666677889999999998
Q ss_pred hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCCC---HHHHHHHHHHcC-
Q 027382 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAVP---TEDAQEFAQREN- 151 (224)
Q Consensus 77 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~---~~~~~~~~~~~~- 151 (224)
|.......+..+|++++|+|+++... ....+++..+... ++| +++++||+|+.+..... .+++.+++...+
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 87777777889999999999986322 2233344444433 577 67889999986422211 234555555554
Q ss_pred ----CeEEEEcCCCCC
Q 027382 152 ----LFFMETSALEAT 163 (224)
Q Consensus 152 ----~~~~~~s~~~~~ 163 (224)
++++++|+++|.
T Consensus 164 ~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 164 PGDDIPVIRGSALKAL 179 (394)
T ss_pred CcCCccEEEeeccccc
Confidence 579999999983
No 219
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.76 E-value=1e-17 Score=128.01 Aligned_cols=113 Identities=22% Similarity=0.299 Sum_probs=80.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCc-----------------cCCcceeeEEEEEEE-----CCeEEEEEEEeCCCh
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDS-----------------KATIGVEFQTKTLSI-----DHKTVKAQIWDTAGQ 74 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~ 74 (224)
+|+++|+.|+|||||+++|+........ ....+.++......+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875433210 011233333222222 345689999999999
Q ss_pred hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133 (224)
Q Consensus 75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 133 (224)
..+......++..+|++++|+|+++..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9988888889999999999999987655432 344444332 258999999999974
No 220
>CHL00071 tufA elongation factor Tu
Probab=99.75 E-value=4.6e-17 Score=135.56 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=107.2
Q ss_pred CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC--------------CccCCcceeeEEEEEEECCeEEEEEEEeCC
Q 027382 7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSV--------------DSKATIGVEFQTKTLSIDHKTVKAQIWDTA 72 (224)
Q Consensus 7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 72 (224)
..+......++|+++|++++|||||+++|++..... ......|.+.......+......+.++|||
T Consensus 4 ~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtP 83 (409)
T CHL00071 4 EKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCP 83 (409)
T ss_pred hhccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECC
Confidence 344556778999999999999999999999742110 001113566665555666667788999999
Q ss_pred ChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHH
Q 027382 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAV---PTEDAQEFAQ 148 (224)
Q Consensus 73 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~ 148 (224)
|+..+.......+..+|++++|+|+..... ....+.+..+... ++| +++++||+|+.+.... ..+++..+.+
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~ 159 (409)
T CHL00071 84 GHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLS 159 (409)
T ss_pred ChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence 999887777778889999999999986422 2233344444332 577 7789999998642221 1134555555
Q ss_pred HcC-----CeEEEEcCCCCCCH
Q 027382 149 REN-----LFFMETSALEATNV 165 (224)
Q Consensus 149 ~~~-----~~~~~~s~~~~~~v 165 (224)
..+ ++++++|+.+|.++
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 160 KYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HhCCCCCcceEEEcchhhcccc
Confidence 543 57999999998754
No 221
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.75 E-value=2.5e-17 Score=127.56 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=109.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEE-EEEEEeCCChh-------hhhhhhHhHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTV-KAQIWDTAGQE-------RYRAVTSAYYRG 87 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~D~~G~~-------~~~~~~~~~~~~ 87 (224)
-.|.++|.|++|||||+++|..........++ +|.....-.+...+. .+.+-|+||.- ......-.-+..
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaF--TTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAF--TTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccce--eeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 35889999999999999999987765554444 223333223333333 48999999922 222223334568
Q ss_pred CCEEEEEEeCCCh---hhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEcCCC
Q 027382 88 AVGAMLVYDMTKR---QSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF-FMETSALE 161 (224)
Q Consensus 88 ~d~vi~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~ 161 (224)
++.++||+|++.+ ..|+.+..+...+..+.+ .+.|.++|+||+|+++ .....++++.+...-+ ++++||++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e---ae~~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE---AEKNLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh---HHHHHHHHHHHHcCCCcEEEeeecc
Confidence 9999999999997 777777766555544332 5789999999999853 1122357777776655 99999999
Q ss_pred CCCHHHHHHHHHH
Q 027382 162 ATNVETAFLTVLT 174 (224)
Q Consensus 162 ~~~v~~~~~~i~~ 174 (224)
++|+.++++.+.+
T Consensus 352 ~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 352 GEGLEELLNGLRE 364 (366)
T ss_pred ccchHHHHHHHhh
Confidence 9999999887764
No 222
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=5.5e-17 Score=134.60 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=103.2
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCCC------CC--------CccCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027382 10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEF------SV--------DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 75 (224)
++....++|+++|+.++|||||+++|++... .. ......|.+.......++.....+.+|||||++
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 4466789999999999999999999984310 00 001113566666666676677889999999999
Q ss_pred hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEE-EEEeCCCCCCCCCCC---HHHHHHHHHHcC
Q 027382 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAVP---TEDAQEFAQREN 151 (224)
Q Consensus 76 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~~~---~~~~~~~~~~~~ 151 (224)
.|..........+|++++|+|+.+.... ...+.+..+... ++|.+ +++||+|+.+..... .+++++++..++
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMP-QTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 8877677777889999999999873222 223333334332 46655 689999986422211 234666666654
Q ss_pred -----CeEEEEcCCCCC
Q 027382 152 -----LFFMETSALEAT 163 (224)
Q Consensus 152 -----~~~~~~s~~~~~ 163 (224)
++++++|+++|.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 689999999875
No 223
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=6.3e-17 Score=126.17 Aligned_cols=165 Identities=18% Similarity=0.155 Sum_probs=115.0
Q ss_pred cCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC---------hhh
Q 027382 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG---------QER 76 (224)
Q Consensus 6 ~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G---------~~~ 76 (224)
..++.-......|+|.|.||||||||++++.+......+.|+++..+. .-.+......++++|||| ++.
T Consensus 159 ~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~--vGhfe~~~~R~QvIDTPGlLDRPl~ErN~I 236 (346)
T COG1084 159 KKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIH--VGHFERGYLRIQVIDTPGLLDRPLEERNEI 236 (346)
T ss_pred hcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCcccccee--EeeeecCCceEEEecCCcccCCChHHhcHH
Confidence 344444557788999999999999999999998887777676333332 223455667899999999 111
Q ss_pred hhhhhHhHhcCCCEEEEEEeCCC--hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-
Q 027382 77 YRAVTSAYYRGAVGAMLVYDMTK--RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF- 153 (224)
Q Consensus 77 ~~~~~~~~~~~~d~vi~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~- 153 (224)
........-.-.++++|+||++. .-+.+....++..+.... +.|+++|.||+|..+... .+++..+....+..
T Consensus 237 E~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e~--~~~~~~~~~~~~~~~ 312 (346)
T COG1084 237 ERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEEK--LEEIEASVLEEGGEE 312 (346)
T ss_pred HHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchhH--HHHHHHHHHhhcccc
Confidence 12223333345788999999987 446677777778787765 489999999999874332 44555555555543
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH
Q 027382 154 FMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 154 ~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
+..+++..+.+++..-..+....
T Consensus 313 ~~~~~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 313 PLKISATKGCGLDKLREEVRKTA 335 (346)
T ss_pred ccceeeeehhhHHHHHHHHHHHh
Confidence 77788888888776666655543
No 224
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.74 E-value=1e-16 Score=126.03 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=83.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCcc--------------------CCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSK--------------------ATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 75 (224)
-+|+++|++|+|||||+++|+...-..... ...+.++......+.+..+.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999998632111100 011445555556677788999999999999
Q ss_pred hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 76 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
.+.......++.+|++|+|+|+++.... ....++..... .++|+++++||+|+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 8887777888999999999999874322 22334443332 3689999999999864
No 225
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.74 E-value=4.5e-17 Score=138.05 Aligned_cols=153 Identities=20% Similarity=0.181 Sum_probs=115.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh------hhhhhhHhHh--c
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE------RYRAVTSAYY--R 86 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------~~~~~~~~~~--~ 86 (224)
..+|+++|.||||||||.|+|.+.+......| |.|+..+...+.....+++++|.||-= .-....+.++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwp--GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWP--GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCC--CeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 35699999999999999999999888777766 466666666666677779999999911 1122233333 4
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382 87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 166 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 166 (224)
++|+++-|+|+++- ++.+....+..+-+.|++++.|++|....+-+ .-+.+++.+..++|+++++|++|.|++
T Consensus 81 ~~D~ivnVvDAtnL------eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNL------ERNLYLTLQLLELGIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchH------HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 67999999999973 33332223333347999999999998764444 345888999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027382 167 TAFLTVLTEI 176 (224)
Q Consensus 167 ~~~~~i~~~i 176 (224)
++...+.+..
T Consensus 154 ~l~~~i~~~~ 163 (653)
T COG0370 154 ELKRAIIELA 163 (653)
T ss_pred HHHHHHHHhc
Confidence 9998887543
No 226
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.9e-16 Score=130.49 Aligned_cols=196 Identities=16% Similarity=0.116 Sum_probs=147.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
++--|-++|+...|||||+..|-+..........++..+....+.+. ....++|.||||+..|.++...-...+|.+++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 45567899999999999999999877765555555555666666665 44789999999999999999999999999999
Q ss_pred EEeCCCh---hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC---------CeEEEEcCCC
Q 027382 94 VYDMTKR---QSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN---------LFFMETSALE 161 (224)
Q Consensus 94 v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~ 161 (224)
|+.++|. .+.+.+ ...+ ..++|+++.+||+|.++ .+.+.+.+-...++ ..++++||++
T Consensus 231 VVAadDGVmpQT~EaI----khAk---~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 231 VVAADDGVMPQTLEAI----KHAK---SANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred EEEccCCccHhHHHHH----HHHH---hcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 9999883 333322 2222 34799999999999864 34444444433333 3589999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccCCcCccccccCCccCCCCeeeeecCCCCCCCCCCcc
Q 027382 162 ATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASKRGC 220 (224)
Q Consensus 162 ~~~v~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 220 (224)
|+|++.+.+.++-...-+--+-....+-++-+..++..++.+.+-+-..+..+-+|++.
T Consensus 301 g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~v 359 (683)
T KOG1145|consen 301 GENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSV 359 (683)
T ss_pred CCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccE
Confidence 99999999888755544445555666778888889999888887777777777777654
No 227
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=4.5e-16 Score=128.62 Aligned_cols=178 Identities=17% Similarity=0.159 Sum_probs=127.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECC-eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH-KTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
..-|.++|+...|||||+..+-...........++.++....+..+. ..-.+.++|||||+.|..+...-..-+|.+|+
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL 84 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL 84 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence 34579999999999999999998877666555555556665555542 34578999999999999999999999999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC---------eEEEEcCCC
Q 027382 94 VYDMTK---RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL---------FFMETSALE 161 (224)
Q Consensus 94 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~---------~~~~~s~~~ 161 (224)
|++++| |.+.+.+ +..+. .++|+++.+||+|.++ .+......-..++++ .++++||++
T Consensus 85 VVa~dDGv~pQTiEAI----~hak~---a~vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~t 154 (509)
T COG0532 85 VVAADDGVMPQTIEAI----NHAKA---AGVPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKT 154 (509)
T ss_pred EEEccCCcchhHHHHH----HHHHH---CCCCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence 999998 3333332 22232 3799999999999974 334444444444443 589999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccCCcCccccccCCccCCCC
Q 027382 162 ATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKG 202 (224)
Q Consensus 162 ~~~v~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (224)
|+|+++++..++-..--...+...+..-..+.......++-
T Consensus 155 g~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~ 195 (509)
T COG0532 155 GEGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGL 195 (509)
T ss_pred CCCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCC
Confidence 99999999988754444433333444555555555544443
No 228
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.72 E-value=2.7e-16 Score=120.53 Aligned_cols=153 Identities=18% Similarity=0.191 Sum_probs=96.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCC------------cceee-----------EEE-------------EEEEC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKAT------------IGVEF-----------QTK-------------TLSID 60 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~------------~~~~~-----------~~~-------------~~~~~ 60 (224)
||+++|+.++|||||+++|..+.+....... .|.+. ... ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999976553321110 01110 000 00112
Q ss_pred CeEEEEEEEeCCChhhhhhhhHhHhc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC
Q 027382 61 HKTVKAQIWDTAGQERYRAVTSAYYR--GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV 138 (224)
Q Consensus 61 ~~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~ 138 (224)
.....+.++|+||++.+.......+. .+|++++|+|+..+.. .....++..+... ++|+++++||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence 23467899999999888665555554 6899999999986433 2234444444433 5889999999998542211
Q ss_pred --CHHHHHHHHHH--------------------------cCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 139 --PTEDAQEFAQR--------------------------ENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 139 --~~~~~~~~~~~--------------------------~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
...++.++.+. ..++++.+|+.+|+|++++...|.
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 11222333221 123799999999999998886653
No 229
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.72 E-value=3.4e-17 Score=135.67 Aligned_cols=164 Identities=24% Similarity=0.295 Sum_probs=121.0
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
.....+||+++|+.|+||||||-.|+...+.....+-. .......++.-..+...++|++.....+.....-++.||+
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl--~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL--PRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccC--CccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence 45678999999999999999999999988865433321 1111113333344558999998766666666888999999
Q ss_pred EEEEEeCCChhhHHHHHH-HHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHH-HHHHHHHcC-Ce-EEEEcCCCCCC
Q 027382 91 AMLVYDMTKRQSFDHMAR-WLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTED-AQEFAQREN-LF-FMETSALEATN 164 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~-~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~-~~~~~~~~~-~~-~~~~s~~~~~~ 164 (224)
++++|+.+++++++.+.. |+..+++..+ .++|+|+|+||+|..+....+.+. ...+..++. +. .++|||++-.+
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 999999999999999975 9999998774 589999999999997654443333 333333322 22 68999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 165 VETAFLTVLTEI 176 (224)
Q Consensus 165 v~~~~~~i~~~i 176 (224)
+.++|...-..+
T Consensus 163 ~~e~fYyaqKaV 174 (625)
T KOG1707|consen 163 VSELFYYAQKAV 174 (625)
T ss_pred hHhhhhhhhhee
Confidence 999997654433
No 230
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=8.3e-17 Score=132.53 Aligned_cols=162 Identities=20% Similarity=0.218 Sum_probs=123.3
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC--C-----------CccCCcceeeEEEEEEEC---CeEEEEEEEeCCCh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFS--V-----------DSKATIGVEFQTKTLSID---HKTVKAQIWDTAGQ 74 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~--~-----------~~~~~~~~~~~~~~~~~~---~~~~~~~l~D~~G~ 74 (224)
+.++.-|+.|+-+...|||||..+|+...-. . .-..-.|+++..++..+- +..+.++++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 4477888999999999999999999763221 0 111223677776666553 44499999999999
Q ss_pred hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHHcCCe
Q 027382 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV-PTEDAQEFAQRENLF 153 (224)
Q Consensus 75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~ 153 (224)
.+|.......+.-||++|+|+|++..-..+....++..+.. +.-+|.|+||+|++..+.. ...++.+.......+
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~ 211 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAE 211 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999987767777776666654 5779999999999754321 122334444444557
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH
Q 027382 154 FMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 154 ~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
.+.+||++|.|+.++++++++.+
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred eEEEEeccCccHHHHHHHHHhhC
Confidence 99999999999999999998877
No 231
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.72 E-value=9e-17 Score=126.39 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=83.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC----------------ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVD----------------SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV 80 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 80 (224)
+|+++|++++|||||+++|+...-... .....+.+.......+.+....+.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999975221100 0112255555555566667789999999999988888
Q ss_pred hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 81 TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 81 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
+...++.+|++++|+|+.+...-. ....+..+.. .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 999999999999999998743322 2333333433 2689999999999864
No 232
>COG2262 HflX GTPases [General function prediction only]
Probab=99.72 E-value=5.2e-16 Score=124.56 Aligned_cols=163 Identities=17% Similarity=0.118 Sum_probs=119.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh--hhhhhhH------h
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE--RYRAVTS------A 83 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--~~~~~~~------~ 83 (224)
......|.++|-.++|||||+|+|.+........-+.+.+.....+.+.+ ...+.+.||.|-- -...+.. .
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE 267 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE 267 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH
Confidence 35678899999999999999999998776655555545555566666644 5678899999911 1122222 2
Q ss_pred HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382 84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT 163 (224)
Q Consensus 84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (224)
....+|+++.|+|+++|+....+....+.+.+..-.+.|+|+|.||+|+..... .........-..+.+||++|.
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~ 342 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGE 342 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCc
Confidence 246899999999999998888888888888877656799999999999753222 112222221158999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 027382 164 NVETAFLTVLTEIYRII 180 (224)
Q Consensus 164 ~v~~~~~~i~~~i~~~~ 180 (224)
|++.+...|.+.+....
T Consensus 343 gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 343 GLDLLRERIIELLSGLR 359 (411)
T ss_pred CHHHHHHHHHHHhhhcc
Confidence 99999999888776544
No 233
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.71 E-value=3.2e-16 Score=131.34 Aligned_cols=152 Identities=14% Similarity=0.169 Sum_probs=108.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-----------------------------CccCCcceeeEEEEEEECCe
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSV-----------------------------DSKATIGVEFQTKTLSIDHK 62 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 62 (224)
....++|+++|+.++|||||+.+|+...-.. ......|.+.......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 4567999999999999999999997522100 00112256666666667778
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhH-------HHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCC
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSF-------DHMARWLDELRGHADKNIV-IMLIGNKCDLGS 134 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~ 134 (224)
.+.+.++|+||++.|.......+..+|++|+|+|+++. .+ ...++.+..+... ++| +++++||+|+.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCCc
Confidence 88999999999999999999999999999999999872 22 2334443333322 464 788999999852
Q ss_pred CC--C----CCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHH
Q 027382 135 LR--A----VPTEDAQEFAQREN-----LFFMETSALEATNVET 167 (224)
Q Consensus 135 ~~--~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~ 167 (224)
.. . ...++++.+++..+ ++|+++|+++|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 11 0 01345667777665 5799999999999854
No 234
>PLN03126 Elongation factor Tu; Provisional
Probab=99.71 E-value=3.1e-16 Score=132.04 Aligned_cols=150 Identities=16% Similarity=0.114 Sum_probs=104.8
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCC------CC--------CccCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEF------SV--------DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 76 (224)
.....++|+++|++++|||||+++|++... .. ......|.+.......+......+.++|+||++.
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 467789999999999999999999996211 11 1122235666655555666677899999999999
Q ss_pred hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHc--
Q 027382 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAV---PTEDAQEFAQRE-- 150 (224)
Q Consensus 77 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~-- 150 (224)
|.......+..+|++++|+|+.+.... ..++++..+... ++| +++++||+|+.+.... -.+++.++....
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 988788888899999999999874332 234444444433 577 7789999998642211 112445555553
Q ss_pred ---CCeEEEEcCCCCCC
Q 027382 151 ---NLFFMETSALEATN 164 (224)
Q Consensus 151 ---~~~~~~~s~~~~~~ 164 (224)
+++++++|+.++.+
T Consensus 233 ~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 233 PGDDIPIISGSALLALE 249 (478)
T ss_pred CcCcceEEEEEcccccc
Confidence 46799999998854
No 235
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.71 E-value=7.6e-16 Score=118.86 Aligned_cols=159 Identities=19% Similarity=0.185 Sum_probs=105.2
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh------hh------hh
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE------RY------RA 79 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------~~------~~ 79 (224)
.-+..+|+|+|.|++|||||.|.+++......+.... ++.......+.....++.++||||.- .+ -.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~-TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVH-TTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCcccccccccc-ceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 4578999999999999999999999998877666553 33334444456777899999999911 11 11
Q ss_pred hhHhHhcCCCEEEEEEeCCChhh--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC-------------CCCH---H
Q 027382 80 VTSAYYRGAVGAMLVYDMTKRQS--FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR-------------AVPT---E 141 (224)
Q Consensus 80 ~~~~~~~~~d~vi~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-------------~~~~---~ 141 (224)
.....+..||.+++|+|+++... -..+.+.+.... .+|-++|+||.|....+ .++. +
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys-----~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS-----KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh-----cCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 23445678999999999996221 122222222222 58899999999975321 1211 1
Q ss_pred HHHHHHHHc---------CC----eEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 142 DAQEFAQRE---------NL----FFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 142 ~~~~~~~~~---------~~----~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
..++|.... +. .+|.+||++|+|++++-++|+...
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 111222111 11 278999999999999988877544
No 236
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=1.1e-15 Score=112.06 Aligned_cols=159 Identities=16% Similarity=0.203 Sum_probs=107.7
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC----------hhhhhhh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG----------QERYRAV 80 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~ 80 (224)
+.+...-|+++|.++||||||||+|+++..-.-...+.|.|.......++.. +.++|.|| .+.+..+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 3446678999999999999999999997743333444477777666666554 88999999 4555666
Q ss_pred hHhHhc---CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC----Ce
Q 027382 81 TSAYYR---GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN----LF 153 (224)
Q Consensus 81 ~~~~~~---~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~----~~ 153 (224)
...|+. +..++++++|+..+-...+ .+.++.+.+. ++|+++++||+|.....+. ...+...++... ..
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D-~em~~~l~~~---~i~~~vv~tK~DKi~~~~~-~k~l~~v~~~l~~~~~~~ 171 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLD-REMIEFLLEL---GIPVIVVLTKADKLKKSER-NKQLNKVAEELKKPPPDD 171 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEccccCChhHH-HHHHHHHHHHhcCCCCcc
Confidence 666664 3567888889876332211 1334444443 6999999999998653332 222333333322 22
Q ss_pred --EEEEcCCCCCCHHHHHHHHHHHHH
Q 027382 154 --FMETSALEATNVETAFLTVLTEIY 177 (224)
Q Consensus 154 --~~~~s~~~~~~v~~~~~~i~~~i~ 177 (224)
++.+|+.++.|++++...|.+.+.
T Consensus 172 ~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 172 QWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ceEEEEecccccCHHHHHHHHHHHhh
Confidence 677899999999998888877654
No 237
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.71 E-value=2.5e-16 Score=133.00 Aligned_cols=154 Identities=21% Similarity=0.174 Sum_probs=101.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc------------cC-------------------CcceeeEEEEEEEC
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS------------KA-------------------TIGVEFQTKTLSID 60 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~------------~~-------------------~~~~~~~~~~~~~~ 60 (224)
....++|+++|+.++|||||+++|+...-.... .. ..|++.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 467799999999999999999999865321110 00 11444555455556
Q ss_pred CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCH
Q 027382 61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPT 140 (224)
Q Consensus 61 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 140 (224)
.....+.++||||++.+.......+..+|++++|+|+.....-.. .+.+..+... . ..|+++++||+|+.+......
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~l-g-~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIATLL-G-IKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHh-C-CCceEEEEEeeccccchhHHH
Confidence 667789999999999887666666899999999999986422111 1111112221 1 246899999999864222112
Q ss_pred HH----HHHHHHHc----CCeEEEEcCCCCCCHHHH
Q 027382 141 ED----AQEFAQRE----NLFFMETSALEATNVETA 168 (224)
Q Consensus 141 ~~----~~~~~~~~----~~~~~~~s~~~~~~v~~~ 168 (224)
++ +..+.... ..+++++||++|.|+.+.
T Consensus 181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 22 22333333 367999999999998764
No 238
>PRK00049 elongation factor Tu; Reviewed
Probab=99.71 E-value=7.4e-16 Score=127.76 Aligned_cols=152 Identities=17% Similarity=0.169 Sum_probs=104.2
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCC------C--------CccCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFS------V--------DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 74 (224)
.++....++|+++|+.++|||||+++|++.... . ......|.+.......+......+.++||||+
T Consensus 6 ~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~ 85 (396)
T PRK00049 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGH 85 (396)
T ss_pred ccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCH
Confidence 345677899999999999999999999873110 0 00113366666666666666778999999999
Q ss_pred hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEE-EEEeCCCCCCCCCC---CHHHHHHHHHHc
Q 027382 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM-LIGNKCDLGSLRAV---PTEDAQEFAQRE 150 (224)
Q Consensus 75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~~---~~~~~~~~~~~~ 150 (224)
..+.......+..+|++++|+|+..+.. ....+++..+... ++|.+ +++||+|+.+.... -..++..+....
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~ 161 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhc
Confidence 8887777777899999999999987422 2333444444433 57875 58999998642211 112344454443
Q ss_pred -----CCeEEEEcCCCCCC
Q 027382 151 -----NLFFMETSALEATN 164 (224)
Q Consensus 151 -----~~~~~~~s~~~~~~ 164 (224)
+++++++|++++.+
T Consensus 162 ~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 162 DFPGDDTPIIRGSALKALE 180 (396)
T ss_pred CCCccCCcEEEeecccccC
Confidence 36799999998753
No 239
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.70 E-value=4.6e-16 Score=118.82 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=79.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcc--------------CCcceeeEEE--EEEEC--------CeEEEEEEEeCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSK--------------ATIGVEFQTK--TLSID--------HKTVKAQIWDTA 72 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~~~~~~~~~~--~~~~~--------~~~~~~~l~D~~ 72 (224)
+|+++|+.++|||||+.+|+...-..... ...|.+.... ...+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 68999999999999999998643211000 0112222222 22222 337889999999
Q ss_pred ChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133 (224)
Q Consensus 73 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 133 (224)
|+..+......+++.+|++++|+|+++...... +..+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcc
Confidence 999999999999999999999999998655443 233333322 258999999999985
No 240
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.70 E-value=6.7e-16 Score=121.94 Aligned_cols=142 Identities=13% Similarity=0.189 Sum_probs=91.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCC----------ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-----
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVD----------SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR----- 78 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----- 78 (224)
..++|+|+|.+|+|||||+|+|++...... ..++.+.......+..++..+.+.+|||||-....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999999876543 22333344444455556777899999999932110
Q ss_pred ---------------------hhhHhHhc--CCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 79 ---------------------AVTSAYYR--GAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 79 ---------------------~~~~~~~~--~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
......+. .+|+++|+++.+. ..+... ...+..+.. .+|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~~----~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLSK----RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHhc----cCCEEEEEECCCcCC
Confidence 00001222 4678888888765 222111 333344432 589999999999854
Q ss_pred CC--CCCHHHHHHHHHHcCCeEEEEcCC
Q 027382 135 LR--AVPTEDAQEFAQRENLFFMETSAL 160 (224)
Q Consensus 135 ~~--~~~~~~~~~~~~~~~~~~~~~s~~ 160 (224)
.. ......+.+.+..+++.++.....
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 22 223445667777889988877653
No 241
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.70 E-value=4.7e-16 Score=129.36 Aligned_cols=149 Identities=22% Similarity=0.189 Sum_probs=98.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCc-------------------------------cCCcceeeEEEEEEECCeEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDS-------------------------------KATIGVEFQTKTLSIDHKTV 64 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 64 (224)
++|+++|+.++|||||+.+|+...-.... ....|.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999999753221100 01124445555555666677
Q ss_pred EEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCH----
Q 027382 65 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPT---- 140 (224)
Q Consensus 65 ~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~---- 140 (224)
.+.++||||++.|.......+..+|++++|+|+.....-. .++.+..+.... ..++++++||+|+.+......
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence 8999999999988777777889999999999998643222 222222222221 235889999999864222111
Q ss_pred HHHHHHHHHcC---CeEEEEcCCCCCCHHH
Q 027382 141 EDAQEFAQREN---LFFMETSALEATNVET 167 (224)
Q Consensus 141 ~~~~~~~~~~~---~~~~~~s~~~~~~v~~ 167 (224)
+++..+....+ ++++++||++|+|+.+
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 22333444443 4699999999999875
No 242
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.69 E-value=6.8e-16 Score=129.45 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=105.0
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCC--CC---------------------------CccCCcceeeEEEEEEECCe
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEF--SV---------------------------DSKATIGVEFQTKTLSIDHK 62 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~ 62 (224)
....++|+++|+.++|||||+.+|+...- .. ......|.+.......+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 45678999999999999999999986211 00 00012256666666667778
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhh------HHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCC-
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS------FDHMARWLDELRGHADKNIV-IMLIGNKCDLGS- 134 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~- 134 (224)
...+.++|+||+..|.......+..+|++++|+|++.... -...++.+..+... ++| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccc
Confidence 8899999999999998888888999999999999986421 12333333333332 455 678999999532
Q ss_pred -CCCCC----HHHHHHHHHHc-----CCeEEEEcCCCCCCHHH
Q 027382 135 -LRAVP----TEDAQEFAQRE-----NLFFMETSALEATNVET 167 (224)
Q Consensus 135 -~~~~~----~~~~~~~~~~~-----~~~~~~~s~~~~~~v~~ 167 (224)
..+.. .+++.++.... +++++++|+.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11111 23344444443 35799999999999864
No 243
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=8.8e-16 Score=121.28 Aligned_cols=143 Identities=18% Similarity=0.193 Sum_probs=91.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcc------CC----------cceeeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSK------AT----------IGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV 80 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~------~~----------~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 80 (224)
+|+++|++|+|||||+++|+......... .+ .+.+.......+.+..+.+.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999998643211110 00 122223333334445678999999999888888
Q ss_pred hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEE--EEc
Q 027382 81 TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFM--ETS 158 (224)
Q Consensus 81 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~s 158 (224)
+..++..+|++++|+|+++.........| ..+.. .++|+++++||+|+.... ..+...++....+.+++ .+.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip 154 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLP 154 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEec
Confidence 88899999999999999986544332222 23332 268999999999986431 12334444444444333 334
Q ss_pred CCCCCCH
Q 027382 159 ALEATNV 165 (224)
Q Consensus 159 ~~~~~~v 165 (224)
..++.++
T Consensus 155 ~~~~~~~ 161 (268)
T cd04170 155 IGEGDDF 161 (268)
T ss_pred ccCCCce
Confidence 4554443
No 244
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.69 E-value=1.6e-15 Score=114.44 Aligned_cols=158 Identities=12% Similarity=0.156 Sum_probs=93.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcce---eeEEEEEEECCeEEEEEEEeCCChhhhhh-----hhHhHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGV---EFQTKTLSIDHKTVKAQIWDTAGQERYRA-----VTSAYYR 86 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----~~~~~~~ 86 (224)
+++|+++|.+|+|||||+|+|++.........+.+. +.....+.. .....+.+||+||...... +....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 478999999999999999999986654322222221 111111111 1134689999999643221 1222367
Q ss_pred CCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC----C---CH----HHHHHHH----HHc
Q 027382 87 GAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGSLRA----V---PT----EDAQEFA----QRE 150 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~---~~----~~~~~~~----~~~ 150 (224)
.+|++++|.+. .+... ..++..+.+. +.|+++|+||+|+..... . .. +++++.+ ...
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 78988887432 12222 3345555543 578999999999842111 0 01 1222222 222
Q ss_pred C---CeEEEEcCC--CCCCHHHHHHHHHHHHHHHH
Q 027382 151 N---LFFMETSAL--EATNVETAFLTVLTEIYRII 180 (224)
Q Consensus 151 ~---~~~~~~s~~--~~~~v~~~~~~i~~~i~~~~ 180 (224)
+ -+++.+|+. .+.++..+.+.++..+.+..
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 2 258999998 57888988888888776543
No 245
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=2.3e-16 Score=111.03 Aligned_cols=156 Identities=16% Similarity=0.228 Sum_probs=114.2
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
+...-|++++|-.++|||||++.|.+.... +..||.-.+.. . +.-...+++.+|.+|+...+..|..++..+|++
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTSE--~--l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~i 91 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSE--E--LSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAI 91 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCChH--H--heecCceEEEEccccHHHHHHHHHHHHhhhcee
Confidence 345568999999999999999999987653 33344222212 2 223667899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH---H---c--------CC---e
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ---R---E--------NL---F 153 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~---~---~--------~~---~ 153 (224)
++.+|+.|.+.+.+.+..++.+..... .++|+++.+||+|.+. ..+.++.+-... . . ++ .
T Consensus 92 v~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~--a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~e 169 (193)
T KOG0077|consen 92 VYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY--AASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLE 169 (193)
T ss_pred EeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC--cccHHHHHHHHHHHHHhcccccccccCCCCCeEE
Confidence 999999999999999888777654432 5899999999999874 334555442221 1 1 11 3
Q ss_pred EEEEcCCCCCCHHHHHHHHHH
Q 027382 154 FMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 154 ~~~~s~~~~~~v~~~~~~i~~ 174 (224)
.+-||...+.+..+.|.++-.
T Consensus 170 vfmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 170 VFMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred EEEEEEEccCccceeeeehhh
Confidence 566777777777777776654
No 246
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.68 E-value=1.6e-15 Score=118.05 Aligned_cols=157 Identities=21% Similarity=0.197 Sum_probs=112.3
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSA 83 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~ 83 (224)
..+...+|+++|.|++|||||+++|.+........++ +|.....-.+++++..++++|+||.-. -......
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~F--TTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vls 136 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPF--TTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLS 136 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCc--eecccccceEeecCceEEEEcCcccccCcccCCCCcceeee
Confidence 3556778999999999999999999998766555554 334444445677889999999998221 1244566
Q ss_pred HhcCCCEEEEEEeCCChhh-HHHHHHHHHH-----------------------------------------HHhc-----
Q 027382 84 YYRGAVGAMLVYDMTKRQS-FDHMARWLDE-----------------------------------------LRGH----- 116 (224)
Q Consensus 84 ~~~~~d~vi~v~d~~~~~s-~~~~~~~~~~-----------------------------------------~~~~----- 116 (224)
..++||++++|+|+..... .+.+.+.+.. +.+.
T Consensus 137 v~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA 216 (365)
T COG1163 137 VARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNA 216 (365)
T ss_pred eeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccc
Confidence 7899999999999986554 4444332111 0000
Q ss_pred -------------------CCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 117 -------------------ADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 117 -------------------~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
...-+|.+.|.||+|+.. .+++..+.+.. ..+.+||+.+.|++++.+.+.+.+
T Consensus 217 ~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 217 DVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred eEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 011478999999999863 55566666655 679999999999999998888654
No 247
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=5.2e-16 Score=118.46 Aligned_cols=163 Identities=15% Similarity=0.171 Sum_probs=111.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh-------hhhhhhHhH
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE-------RYRAVTSAY 84 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-------~~~~~~~~~ 84 (224)
...+++|+++|..|+|||||||+|+++...+......+.+...... ..+..-.+.+||+||-. +++.....+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~-~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR-LSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH-hhccccceEEecCCCcccchhhhHHHHHHHHHH
Confidence 5578999999999999999999999877766554443333332222 12333678999999933 378889999
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC-------CCCHHHHHHHHHH--------
Q 027382 85 YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR-------AVPTEDAQEFAQR-------- 149 (224)
Q Consensus 85 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-------~~~~~~~~~~~~~-------- 149 (224)
+...|+++++.++.|+.--.....|.+.+.... +.++++++|.+|....- ......+++|..+
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~--~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILGL--DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHHHHHhcc--CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999998654333333434333322 47899999999975321 1111122222221
Q ss_pred c--CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382 150 E--NLFFMETSALEATNVETAFLTVLTEIY 177 (224)
Q Consensus 150 ~--~~~~~~~s~~~~~~v~~~~~~i~~~i~ 177 (224)
. --|++.++...++|++.+...++..+.
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 1 126788888999999999999887764
No 248
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.67 E-value=3.3e-16 Score=119.68 Aligned_cols=162 Identities=16% Similarity=0.243 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhh-----hhhHhHhcCCCE
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI-DHKTVKAQIWDTAGQERYR-----AVTSAYYRGAVG 90 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~-----~~~~~~~~~~d~ 90 (224)
||+++|+.+|||||+.+.++.+-.+.... ..+.|.......+ ....+.+.+||+||+..+- ......++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~-~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTL-RLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGG-G-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhcc-ccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999999999765543322 2223333333333 2455689999999986442 346778999999
Q ss_pred EEEEEeCCChhhHH---HHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC--CCC----HHHHHHHHHHcC---CeEEEEc
Q 027382 91 AMLVYDMTKRQSFD---HMARWLDELRGHADKNIVIMLIGNKCDLGSLR--AVP----TEDAQEFAQREN---LFFMETS 158 (224)
Q Consensus 91 vi~v~d~~~~~s~~---~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~----~~~~~~~~~~~~---~~~~~~s 158 (224)
+|||+|+.+.+-.+ .+...+..+.+.. ++..+.++++|+|+..+. ... .+.+.+.+...+ +.++.||
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 99999998544333 3334444444443 488899999999985321 111 122333344445 6799999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Q 027382 159 ALEATNVETAFLTVLTEIYRIIS 181 (224)
Q Consensus 159 ~~~~~~v~~~~~~i~~~i~~~~~ 181 (224)
..+ +.+-++|..+++.+.....
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~~ 180 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNLS 180 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTHC
T ss_pred CcC-cHHHHHHHHHHHHHcccHH
Confidence 998 5788888888877765443
No 249
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.67 E-value=1.7e-15 Score=132.71 Aligned_cols=154 Identities=21% Similarity=0.165 Sum_probs=101.0
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc------------cC-------------------CcceeeEEEEEEE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS------------KA-------------------TIGVEFQTKTLSI 59 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~------------~~-------------------~~~~~~~~~~~~~ 59 (224)
+.+..++|+++|++++|||||+++|+...-.... .. ..|.+.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 4556789999999999999999999974322110 00 0133444444455
Q ss_pred CCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC
Q 027382 60 DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP 139 (224)
Q Consensus 60 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 139 (224)
......+.++||||++.+.......+..+|++++|+|+.....-. ..+.+..+.... ..++++++||+|+.+.....
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLLG--IRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHhC--CCeEEEEEEecccccchhHH
Confidence 566678899999999988766666788999999999997643221 122222222221 25688999999986422111
Q ss_pred H----HHHHHHHHHcC---CeEEEEcCCCCCCHHH
Q 027382 140 T----EDAQEFAQREN---LFFMETSALEATNVET 167 (224)
Q Consensus 140 ~----~~~~~~~~~~~---~~~~~~s~~~~~~v~~ 167 (224)
. .++.++....+ .+++++||++|.|+.+
T Consensus 177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1 22334444544 3599999999999874
No 250
>PLN03127 Elongation factor Tu; Provisional
Probab=99.66 E-value=3.4e-15 Score=125.13 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=98.7
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcC------CCCCC--------ccCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARN------EFSVD--------SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 76 (224)
.....++|+++|+.++|||||+++|.+. ..... .....|++.......++.....+.++||||+..
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 4567899999999999999999999732 10000 111135666666667777778899999999988
Q ss_pred hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCCC---HHHHHHHHHHc--
Q 027382 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAVP---TEDAQEFAQRE-- 150 (224)
Q Consensus 77 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~---~~~~~~~~~~~-- 150 (224)
+-......+..+|++++|+|+.+... ...++.+..+... ++| +++++||+|+.+..... ..++.++....
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 86666666778999999999986432 2233344444433 578 57889999986422211 11233443332
Q ss_pred ---CCeEEEEcCC---CCCC
Q 027382 151 ---NLFFMETSAL---EATN 164 (224)
Q Consensus 151 ---~~~~~~~s~~---~~~~ 164 (224)
.++++++|+. +|.|
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n 232 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTN 232 (447)
T ss_pred CCCcceEEEeccceeecCCC
Confidence 3578888875 4554
No 251
>PRK13351 elongation factor G; Reviewed
Probab=99.66 E-value=2.7e-15 Score=132.64 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=87.3
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC--------C-----cc---CCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSV--------D-----SK---ATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~--------~-----~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 74 (224)
+.+...+|+|+|+.++|||||+++|+...-.. . +. ...+.+.......+.+..+.+.+|||||+
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 34567899999999999999999998632100 0 00 01233444444445556789999999999
Q ss_pred hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
..+...+..+++.+|++++|+|+++.........| ..+.. .++|+++++||+|+..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 99988899999999999999999986665544333 33333 2689999999999853
No 252
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.66 E-value=5.7e-15 Score=111.40 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=93.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------hhh----hHhH
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY-------RAV----TSAY 84 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~----~~~~ 84 (224)
++|+++|.+|+|||||+|.+++...........+.+..............+.++||||-... ... ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 47999999999999999999997654333212223333222222234568999999993322 111 1222
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCC------CHHHHHHHHHHcCCeEEE
Q 027382 85 YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAV------PTEDAQEFAQRENLFFME 156 (224)
Q Consensus 85 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~~~ 156 (224)
..++|++++|+++.. .+. .....++.+.+..+ .-.+++++.|+.|......+ ....++...++.+..++.
T Consensus 81 ~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 467899999999876 221 12233344443322 12568888999986432211 124456666666666666
Q ss_pred EcCC-----CCCCHHHHHHHHHHHHH
Q 027382 157 TSAL-----EATNVETAFLTVLTEIY 177 (224)
Q Consensus 157 ~s~~-----~~~~v~~~~~~i~~~i~ 177 (224)
.+.+ .+.++.++++.+.+.+.
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~ 184 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVK 184 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHH
Confidence 6543 44556666666554443
No 253
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.66 E-value=2.4e-15 Score=103.83 Aligned_cols=106 Identities=21% Similarity=0.223 Sum_probs=66.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhHhHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER---------YRAVTSAYYR 86 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~~ 86 (224)
+|+|+|.+|+|||||+|+|++.... ....+..+.......+.++... +.++||||-.. ........+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999986432 2222222222222333444444 46999999321 1112333348
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 027382 87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNK 129 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK 129 (224)
.+|++++|+|++++.. +.....+..++ ...|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999999877322 22333444443 37999999998
No 254
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.65 E-value=3.2e-15 Score=127.43 Aligned_cols=122 Identities=16% Similarity=0.216 Sum_probs=88.0
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-------------c-------cCCcceeeEEEEEEECCeEEEEEE
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD-------------S-------KATIGVEFQTKTLSIDHKTVKAQI 68 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-------------~-------~~~~~~~~~~~~~~~~~~~~~~~l 68 (224)
+...+...+|+|+|++++|||||+++|+...-... . ....|.++......+.+..+.+.+
T Consensus 4 ~~~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inl 83 (526)
T PRK00741 4 AQEVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINL 83 (526)
T ss_pred cchhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEE
Confidence 34556778999999999999999999974211100 0 011244555555566667789999
Q ss_pred EeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 69 WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 69 ~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
|||||+..+.......+..+|++|+|+|+++.... ....++..... .++|+++++||+|+..
T Consensus 84 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 84 LDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred EECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence 99999998888778889999999999999874322 23344444333 3799999999999864
No 255
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.65 E-value=3.8e-15 Score=127.02 Aligned_cols=123 Identities=15% Similarity=0.215 Sum_probs=89.2
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------ccCCcceeeEEEEEEECCeEEEEE
Q 027382 8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD--------------------SKATIGVEFQTKTLSIDHKTVKAQ 67 (224)
Q Consensus 8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~ 67 (224)
+........+|+|+|++++|||||+++|+...-... .....|.++......+++..+.+.
T Consensus 4 ~~~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~in 83 (527)
T TIGR00503 4 LLKEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVN 83 (527)
T ss_pred hhhhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEE
Confidence 455667788999999999999999999864211100 001125556666666777889999
Q ss_pred EEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 68 IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 68 l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
+|||||+..+.......+..+|++|+|+|+++.-. .....++..... .++|+++++||+|+..
T Consensus 84 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 84 LLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred EEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 99999999888777778899999999999987321 223344444333 3689999999999863
No 256
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=7.6e-15 Score=119.38 Aligned_cols=159 Identities=20% Similarity=0.237 Sum_probs=120.3
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-------C------ccCCcceeeEEEEEEE-----CCeEEEEEEEeCC
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSV-------D------SKATIGVEFQTKTLSI-----DHKTVKAQIWDTA 72 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-------~------~~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~ 72 (224)
+.++.-|..++-+-..|||||..||+...... + -....|+++....+.+ ++..+.++++|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 34556677889999999999999997632111 0 0112256666555544 3467999999999
Q ss_pred ChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHH-HHHHHcC
Q 027382 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQ-EFAQREN 151 (224)
Q Consensus 73 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~-~~~~~~~ 151 (224)
||-.|......-+..|.++++|+|++..-..+.+...+..+.+ +.-++-|+||+||+.. ..+..+ ++-.-.|
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~A---dpervk~eIe~~iG 157 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAA---DPERVKQEIEDIIG 157 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCC---CHHHHHHHHHHHhC
Confidence 9999999999999999999999999987777777887777766 5679999999999742 333333 3444456
Q ss_pred Ce---EEEEcCCCCCCHHHHHHHHHHHH
Q 027382 152 LF---FMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 152 ~~---~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
++ .+.+|||+|.|++++++.|++.+
T Consensus 158 id~~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 158 IDASDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred CCcchheeEecccCCCHHHHHHHHHhhC
Confidence 53 78999999999999999988776
No 257
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.63 E-value=5.6e-15 Score=123.71 Aligned_cols=163 Identities=17% Similarity=0.135 Sum_probs=103.1
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCC---CCccCCcceeeEEEEE---------------EEC-------------
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFS---VDSKATIGVEFQTKTL---------------SID------------- 60 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~---------------~~~------------- 60 (224)
....++|+++|+...|||||+.+|.+.... +.-....+.+...... ...
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 356789999999999999999999974321 1111100000000000 000
Q ss_pred ---CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC
Q 027382 61 ---HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA 137 (224)
Q Consensus 61 ---~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 137 (224)
.....+.++|+||++.+.......+..+|++++|+|+.++.......+.+..+.... -.++++++||+|+.+...
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHHH
Confidence 002468999999999998887888889999999999987421222233333332221 246899999999864221
Q ss_pred --CCHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 138 --VPTEDAQEFAQR---ENLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 138 --~~~~~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
...++++++... .+.+++++||++|.|++.+++.|.+.+
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 112334444333 356899999999999998888877543
No 258
>PRK12739 elongation factor G; Reviewed
Probab=99.62 E-value=2.2e-14 Score=126.75 Aligned_cols=120 Identities=14% Similarity=0.124 Sum_probs=86.7
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-----c-----------cCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD-----S-----------KATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 74 (224)
..+...+|+++|++++|||||+++|+...-... . ....|++.......+.+....+.++||||+
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~ 83 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGH 83 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCH
Confidence 355778999999999999999999975311100 0 012245555555555567788999999999
Q ss_pred hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
..+...+...+..+|++++|+|+.+...... +..+..+.. .++|+++++||+|+..
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 8888888999999999999999987543322 233333433 2589999999999863
No 259
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=4.3e-15 Score=121.30 Aligned_cols=169 Identities=22% Similarity=0.235 Sum_probs=115.2
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-----h----hhhH
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY-----R----AVTS 82 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-----~----~~~~ 82 (224)
....++|+++|.||+|||||+|.|........+.-+ |+|.......++-..+.+.+.||+|-.+. . ....
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~-GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP-GTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC-CcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence 445699999999999999999999998775444333 77787777777778889999999994431 1 1123
Q ss_pred hHhcCCCEEEEEEeC--CChhhHHHHHHHHHHHHhcCC------CCCcEEEEEeCCCCCCC-CCCCHHHHHHHHHHc---
Q 027382 83 AYYRGAVGAMLVYDM--TKRQSFDHMARWLDELRGHAD------KNIVIMLIGNKCDLGSL-RAVPTEDAQEFAQRE--- 150 (224)
Q Consensus 83 ~~~~~~d~vi~v~d~--~~~~s~~~~~~~~~~~~~~~~------~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~~--- 150 (224)
..+..+|++++|+|+ ++-++...+.+.+........ ...|++++.||.|+... .+.... ...+....
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~~ 422 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGRS 422 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccCc
Confidence 446789999999999 444444444444444433222 24789999999999643 111111 11122211
Q ss_pred CCe-EEEEcCCCCCCHHHHHHHHHHHHHHHHhc
Q 027382 151 NLF-FMETSALEATNVETAFLTVLTEIYRIISK 182 (224)
Q Consensus 151 ~~~-~~~~s~~~~~~v~~~~~~i~~~i~~~~~~ 182 (224)
..+ +.++|+++++|+..+.+.+.+.+...-..
T Consensus 423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~ 455 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEGCERLSTALLNIVERLVVS 455 (531)
T ss_pred ccceEEEeeechhhhHHHHHHHHHHHHHHhhcC
Confidence 233 45699999999999999998877666543
No 260
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=6.5e-15 Score=118.27 Aligned_cols=156 Identities=19% Similarity=0.173 Sum_probs=109.4
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------------------------ccCCcceeeEEEEEEECC
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD-----------------------------SKATIGVEFQTKTLSIDH 61 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 61 (224)
.....++++++|+..+|||||+-+|+...-... ...-.|.++......+..
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 345779999999999999999999987321110 011127777777777888
Q ss_pred eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhh------HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC
Q 027382 62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS------FDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135 (224)
Q Consensus 62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 135 (224)
..+.+.++|+||+..|-.....-...||+.|+|+|+.+.+. ..+.++ ...+.+..+ -..+++++||+|+.+.
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tlG-i~~lIVavNKMD~v~w 160 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTLG-IKQLIVAVNKMDLVSW 160 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHhcC-CceEEEEEEccccccc
Confidence 88899999999999999989999999999999999998531 111222 222232222 2347889999999864
Q ss_pred CCCCHHHHH----HHHHHc-----CCeEEEEcCCCCCCHHHH
Q 027382 136 RAVPTEDAQ----EFAQRE-----NLFFMETSALEATNVETA 168 (224)
Q Consensus 136 ~~~~~~~~~----~~~~~~-----~~~~~~~s~~~~~~v~~~ 168 (224)
++..++++. .+.+.. +++|+++|+..|.|+.+.
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 443444433 233332 257999999999987653
No 261
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.61 E-value=1.6e-15 Score=111.12 Aligned_cols=115 Identities=23% Similarity=0.334 Sum_probs=72.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhHhH---hcCCCEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI-DHKTVKAQIWDTAGQERYRAVTSAY---YRGAVGA 91 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~---~~~~d~v 91 (224)
-.|+++|+.|+|||+|..+|.++...... ..+... ....+ ......+.++|+||+...+...... ...+.++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~-tS~e~n---~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTV-TSMENN---IAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B----SSEE---EECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCee-ccccCC---ceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 35899999999999999999998543222 111111 11111 2344578999999999887655444 8889999
Q ss_pred EEEEeCCC-hhhHHHHHHHH-HHHHhc--CCCCCcEEEEEeCCCCCC
Q 027382 92 MLVYDMTK-RQSFDHMARWL-DELRGH--ADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 92 i~v~d~~~-~~s~~~~~~~~-~~~~~~--~~~~~p~ilv~nK~D~~~ 134 (224)
|||+|.+. +..+..+.+++ ..+... ....+|++|++||.|+..
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 99999975 44555555543 333322 235799999999999864
No 262
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.61 E-value=1.6e-14 Score=127.63 Aligned_cols=120 Identities=14% Similarity=0.106 Sum_probs=87.2
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-----Ccc-----------CCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSV-----DSK-----------ATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 74 (224)
+.+...+|+|+|++++|||||+++|+...-.. ... ...|++.......+.+.+..+.+|||||+
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~ 85 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH 85 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence 35567799999999999999999997532111 000 01245555555556667789999999999
Q ss_pred hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
..+...+...+..+|++++|+|+.+....... .++..+.. .++|+++++||+|+..
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 88877888999999999999999875444322 33333333 2689999999999874
No 263
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.61 E-value=1.5e-14 Score=113.56 Aligned_cols=159 Identities=15% Similarity=0.102 Sum_probs=103.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhHhcCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSAYYRGAV 89 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d 89 (224)
.|.++|.|++|||||++++.+........++++..-.--.+.+ ...-.+.+-|+||.-+ ..-..-..+.++.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 4889999999999999999998776655555333222222223 3445688999999221 1112233356788
Q ss_pred EEEEEEeCCChh---hHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH----HcCCe-EEEEcC
Q 027382 90 GAMLVYDMTKRQ---SFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ----RENLF-FMETSA 159 (224)
Q Consensus 90 ~vi~v~d~~~~~---s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~----~~~~~-~~~~s~ 159 (224)
+++.|+|++..+ ..+........+..+.. .+.|.++|+||+|+.. +.++++++.+ ..+.. ++.+|+
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~----~~e~~~~~~~~l~~~~~~~~~~~ISa 315 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL----DEEELEELKKALAEALGWEVFYLISA 315 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc----CHHHHHHHHHHHHHhcCCCcceeeeh
Confidence 999999998644 24444444444444332 5789999999999653 3344444333 33332 222999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 027382 160 LEATNVETAFLTVLTEIYRII 180 (224)
Q Consensus 160 ~~~~~v~~~~~~i~~~i~~~~ 180 (224)
.+++|++++...+.+.+.+..
T Consensus 316 ~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 316 LTREGLDELLRALAELLEETK 336 (369)
T ss_pred hcccCHHHHHHHHHHHHHHhh
Confidence 999999999999887776664
No 264
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.60 E-value=7.5e-14 Score=111.95 Aligned_cols=82 Identities=21% Similarity=0.317 Sum_probs=53.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCccC------CcceeeEEEE---------------EEECC-eEEEEEEEeCCCh-
Q 027382 18 VVLIGDSAVGKSQLLARFARNEFSVDSKA------TIGVEFQTKT---------------LSIDH-KTVKAQIWDTAGQ- 74 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~~~~~~~------~~~~~~~~~~---------------~~~~~-~~~~~~l~D~~G~- 74 (224)
|+++|.++||||||+|+|.+........| ..|....... ...++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998775432222 2222221110 00122 4478999999996
Q ss_pred ---hhhhhhhH---hHhcCCCEEEEEEeCCC
Q 027382 75 ---ERYRAVTS---AYYRGAVGAMLVYDMTK 99 (224)
Q Consensus 75 ---~~~~~~~~---~~~~~~d~vi~v~d~~~ 99 (224)
.....+.. ..++.+|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 33333333 35899999999999973
No 265
>PRK09866 hypothetical protein; Provisional
Probab=99.59 E-value=2.3e-13 Score=115.63 Aligned_cols=109 Identities=12% Similarity=0.123 Sum_probs=73.6
Q ss_pred EEEEEEeCCChhh-----hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC
Q 027382 64 VKAQIWDTAGQER-----YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV 138 (224)
Q Consensus 64 ~~~~l~D~~G~~~-----~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~ 138 (224)
..+.++||||-.. ........+..+|+++||+|+....+... ...++.+.+. +...|+++|+||+|+.+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccc
Confidence 4578999999532 23345567999999999999987433222 2233444433 223699999999998643333
Q ss_pred CHHHHHHHHHH----cC---CeEEEEcCCCCCCHHHHHHHHHH
Q 027382 139 PTEDAQEFAQR----EN---LFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 139 ~~~~~~~~~~~----~~---~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
..+.+..+... .. ..++++||+.|.|++.+++.+..
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 35555555432 22 25999999999999999988875
No 266
>PRK00007 elongation factor G; Reviewed
Probab=99.57 E-value=9.1e-14 Score=122.82 Aligned_cols=146 Identities=13% Similarity=0.094 Sum_probs=96.4
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC---C--Ccc-----------CCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFS---V--DSK-----------ATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~---~--~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 74 (224)
..+...+|+|+|++++|||||+++|+...-. . ... ...|++.......+.+....+.++||||+
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~ 85 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH 85 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc
Confidence 3566789999999999999999999742111 0 000 12245555555555566789999999999
Q ss_pred hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--
Q 027382 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-- 152 (224)
Q Consensus 75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 152 (224)
..+.......+..+|++++|+|+...-.... ...+..+... ++|+++++||+|+.+.. .....+++....+.
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~---~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~~ 159 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY---KVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGANP 159 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc---CCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCe
Confidence 8887777888899999999999887543333 2233333332 58899999999987533 12233344333333
Q ss_pred --eEEEEcCCCC
Q 027382 153 --FFMETSALEA 162 (224)
Q Consensus 153 --~~~~~s~~~~ 162 (224)
..+++|+.++
T Consensus 160 ~~~~ipisa~~~ 171 (693)
T PRK00007 160 VPIQLPIGAEDD 171 (693)
T ss_pred eeEEecCccCCc
Confidence 2455555544
No 267
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.57 E-value=8.3e-15 Score=129.75 Aligned_cols=129 Identities=15% Similarity=0.103 Sum_probs=89.6
Q ss_pred CCCcccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCC---------------CCC---ccCCcceeeEEEEEEECCe
Q 027382 1 MSNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEF---------------SVD---SKATIGVEFQTKTLSIDHK 62 (224)
Q Consensus 1 ~~~~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~---------------~~~---~~~~~~~~~~~~~~~~~~~ 62 (224)
|-+++..++++.+...||+++|+.++|||||+++|+...- ... +..|+..........+++.
T Consensus 5 ~~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~ 84 (720)
T TIGR00490 5 MIDKIKELMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGN 84 (720)
T ss_pred HHHHHHHHhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCC
Confidence 4455667777888889999999999999999999985311 000 1112222222222335677
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 133 (224)
.+.+.+|||||+..+.......+..+|++++|+|+.+.-.......| ..+.+ .+.|+++++||+|..
T Consensus 85 ~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 85 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK---ENVKPVLFINKVDRL 151 (720)
T ss_pred ceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH---cCCCEEEEEEChhcc
Confidence 89999999999998888888899999999999999874322222222 22222 257889999999985
No 268
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.54 E-value=2.2e-13 Score=113.39 Aligned_cols=163 Identities=20% Similarity=0.261 Sum_probs=124.0
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA 88 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 88 (224)
++..+.++++.|+|+.++|||.|++.++++.+...+..+....+....+.+.+....+.+-|.+-. ....+...- ..|
T Consensus 419 ~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~c 496 (625)
T KOG1707|consen 419 KQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AAC 496 (625)
T ss_pred ccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-cee
Confidence 345679999999999999999999999999988766666666666666666777788888888754 222222222 779
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEcCCCCCCHHH
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF-FMETSALEATNVET 167 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~ 167 (224)
|+++++||.+++.++......++..... ...|+++|++|+|+++..+...-...+++.+++++ .+.+|.++... .+
T Consensus 497 Dv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~ 573 (625)
T KOG1707|consen 497 DVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NE 573 (625)
T ss_pred eeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-ch
Confidence 9999999999999999888877655544 47999999999999875543333348999999985 77788775323 77
Q ss_pred HHHHHHHHH
Q 027382 168 AFLTVLTEI 176 (224)
Q Consensus 168 ~~~~i~~~i 176 (224)
+|..|....
T Consensus 574 lf~kL~~~A 582 (625)
T KOG1707|consen 574 LFIKLATMA 582 (625)
T ss_pred HHHHHHHhh
Confidence 888877654
No 269
>PRK12740 elongation factor G; Reviewed
Probab=99.53 E-value=2.6e-13 Score=119.92 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=77.9
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCc------c----------CCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhH
Q 027382 21 IGDSAVGKSQLLARFARNEFSVDS------K----------ATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAY 84 (224)
Q Consensus 21 ~G~~~~GKSsli~~l~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 84 (224)
+|++++|||||+++|+...-.... . ...|.+.......+.+..+.+.+|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999653221000 0 012444444444555567899999999999888888889
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382 85 YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133 (224)
Q Consensus 85 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 133 (224)
+..+|++++|+|++..........| ..+.. .++|+++|+||+|+.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 9999999999999886555433323 33332 268999999999985
No 270
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.53 E-value=2.5e-13 Score=107.26 Aligned_cols=129 Identities=11% Similarity=0.109 Sum_probs=76.8
Q ss_pred cccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-CCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh--
Q 027382 4 LYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-ATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV-- 80 (224)
Q Consensus 4 ~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-- 80 (224)
.++.+.+...+.++|+++|.+|+||||++|+|++........ .+.+.+....... .....+.+|||||.......
T Consensus 27 ~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~--~~G~~l~VIDTPGL~d~~~~~e 104 (313)
T TIGR00991 27 LLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT--RAGFTLNIIDTPGLIEGGYIND 104 (313)
T ss_pred HHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE--ECCeEEEEEECCCCCchHHHHH
Confidence 345566677789999999999999999999999876532221 1112222222222 24578999999995433111
Q ss_pred -----hHhHh--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCC
Q 027382 81 -----TSAYY--RGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGS 134 (224)
Q Consensus 81 -----~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~ 134 (224)
...++ ...|+++||..++.....+.-...++.+.+..+ .-.+.+++.|+.|..+
T Consensus 105 ~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 105 QAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 11112 268999999665432111111223333333322 1246899999999753
No 271
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.52 E-value=3.6e-13 Score=108.58 Aligned_cols=121 Identities=20% Similarity=0.229 Sum_probs=88.7
Q ss_pred CCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhcCC-CCCcEEEEEe
Q 027382 60 DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR----------QSFDHMARWLDELRGHAD-KNIVIMLIGN 128 (224)
Q Consensus 60 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ilv~n 128 (224)
....+.+.+||++|+...+..|..++.+++++|||+|+++. ..+.+....+..+.+... .+.|+++++|
T Consensus 157 ~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~N 236 (317)
T cd00066 157 TIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLN 236 (317)
T ss_pred EecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEcc
Confidence 34567899999999999999999999999999999999974 345555555555444332 5799999999
Q ss_pred CCCCCCC--------------C--CCCHHHHHHHHHH----------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382 129 KCDLGSL--------------R--AVPTEDAQEFAQR----------ENLFFMETSALEATNVETAFLTVLTEIYRII 180 (224)
Q Consensus 129 K~D~~~~--------------~--~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~ 180 (224)
|.|+..+ . ..+.+.+..|... ..+..+.++|.+..++..+|+.+.+.|.+..
T Consensus 237 K~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 237 KKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred ChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 9996211 0 2234555544432 1234677899999999999999999887754
No 272
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.52 E-value=3.4e-13 Score=104.79 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=76.4
Q ss_pred CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh------h-
Q 027382 7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR------A- 79 (224)
Q Consensus 7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~- 79 (224)
+..+.....++|+|+|.+|+|||||+|+|++.......... +.+..............+.+|||||-.... .
T Consensus 23 ~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~-~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~ 101 (249)
T cd01853 23 KGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQ-SETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRK 101 (249)
T ss_pred HhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCC-CceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHH
Confidence 34556778999999999999999999999997654332111 122222222333345678999999944331 0
Q ss_pred ---hhHhHhc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCC--CCcEEEEEeCCCCCC
Q 027382 80 ---VTSAYYR--GAVGAMLVYDMTKRQSFDHMARWLDELRGHADK--NIVIMLIGNKCDLGS 134 (224)
Q Consensus 80 ---~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~D~~~ 134 (224)
....++. ..|+++||..++....-......++.+.+..+. -.++++|.||+|...
T Consensus 102 ~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 102 ILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 1222332 578888887666422111112333334433221 256899999999853
No 273
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=3.3e-13 Score=99.23 Aligned_cols=114 Identities=19% Similarity=0.256 Sum_probs=79.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhc---CCCEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYR---GAVGAM 92 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~---~~d~vi 92 (224)
-.|+++|..+||||+|.-+|..+.....+ +........+....-.++++|.||+.+.+.-...+++ .+-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv-----tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTV-----TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCee-----eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 46899999999999999999987432221 1122222222223334899999999999888888887 789999
Q ss_pred EEEeCCC-hhhHHHHHH-HHHHHHhc--CCCCCcEEEEEeCCCCCC
Q 027382 93 LVYDMTK-RQSFDHMAR-WLDELRGH--ADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 93 ~v~d~~~-~~s~~~~~~-~~~~~~~~--~~~~~p~ilv~nK~D~~~ 134 (224)
||+|... ......+.+ ++..+... ....+|++++.||.|+..
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 9999865 233444444 44444444 246789999999999853
No 274
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.52 E-value=1.3e-13 Score=92.85 Aligned_cols=136 Identities=18% Similarity=0.173 Sum_probs=96.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC----hhhhhhhhHhHhcCCCEEE
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG----QERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~vi 92 (224)
||+++|..|+|||||.+.|.+... -|..|. -+.++.. -.+|||| +..+..........+|.++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQ-------Ave~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQ-------AVEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccc-------eeeccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 789999999999999999987653 232331 1222111 1479999 3444444555678999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHHHHHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVETAFLT 171 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~ 171 (224)
+|-.++++++.-. ..+... ...|+|-+++|.|+++ ....+..++|..+-|. ++|++|+.++.|+++++..
T Consensus 70 ~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccCC-----cccccc--cccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 9999998754221 111111 2456999999999985 2345678888888887 4899999999999999987
Q ss_pred HHH
Q 027382 172 VLT 174 (224)
Q Consensus 172 i~~ 174 (224)
+..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 753
No 275
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.50 E-value=3.5e-13 Score=109.55 Aligned_cols=159 Identities=15% Similarity=0.214 Sum_probs=114.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC--C------------CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFS--V------------DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA 79 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 79 (224)
..-+|+++-+...|||||+..|+...-. . .-....|+++-.+..-+.++++.++++|||||..|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 3458999999999999999999874321 1 0112237888888888888999999999999999999
Q ss_pred hhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHH-------cC
Q 027382 80 VTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV-PTEDAQEFAQR-------EN 151 (224)
Q Consensus 80 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~-------~~ 151 (224)
.....++-.|++++++|+.+ ..+.+.+..+..... .+.+.|+|+||+|.++.+.. -.++...+.-. +.
T Consensus 84 EVERvl~MVDgvlLlVDA~E-GpMPQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASE-GPMPQTRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhhcceEEEEEEccc-CCCCchhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 99999999999999999998 333344444333322 25778899999999865531 12333343333 45
Q ss_pred CeEEEEcCCCC----------CCHHHHHHHHHHHH
Q 027382 152 LFFMETSALEA----------TNVETAFLTVLTEI 176 (224)
Q Consensus 152 ~~~~~~s~~~~----------~~v~~~~~~i~~~i 176 (224)
+|++..|+++| .++.-+|+.|++.+
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 68888898876 34566666665554
No 276
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.50 E-value=1.3e-12 Score=107.89 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=54.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcce--eeEEEEEE-------------------EC-CeEEEEEEEeCCC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGV--EFQTKTLS-------------------ID-HKTVKAQIWDTAG 73 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~-------------------~~-~~~~~~~l~D~~G 73 (224)
++|+++|.|+||||||+|+|.+........+..+. +.....+. .+ .....+.+||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987765432222221 11111110 11 2346789999999
Q ss_pred h----hhhhhh---hHhHhcCCCEEEEEEeCC
Q 027382 74 Q----ERYRAV---TSAYYRGAVGAMLVYDMT 98 (224)
Q Consensus 74 ~----~~~~~~---~~~~~~~~d~vi~v~d~~ 98 (224)
. .....+ ....++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3 122222 333488999999999997
No 277
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.49 E-value=1.5e-12 Score=101.68 Aligned_cols=164 Identities=18% Similarity=0.337 Sum_probs=118.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEE--CCeEEEEEEEeCCChhhhhhhhHhHhcCC--
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI--DHKTVKAQIWDTAGQERYRAVTSAYYRGA-- 88 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~~-- 88 (224)
+.--+|+|+|+.++||||||.+|.+.. .+.+..|..+.+..+.- .....++.+|-..|...+..+....+...
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ 126 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSL 126 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCc
Confidence 355689999999999999999998765 33444455555444433 23345788898888776666666655433
Q ss_pred --CEEEEEEeCCCh-hhHHHHHHHHHHHHhcCC-----------------------------------------------
Q 027382 89 --VGAMLVYDMTKR-QSFDHMARWLDELRGHAD----------------------------------------------- 118 (224)
Q Consensus 89 --d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~----------------------------------------------- 118 (224)
-++|++.|+++| .-++.+.+|...+.++..
T Consensus 127 aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de 206 (473)
T KOG3905|consen 127 AETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADE 206 (473)
T ss_pred cceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccc
Confidence 358889999998 445777777665554410
Q ss_pred --------------CCCcEEEEEeCCCC----CCCCCCC-------HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 119 --------------KNIVIMLIGNKCDL----GSLRAVP-------TEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 119 --------------~~~p~ilv~nK~D~----~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
-++|+++|++|+|. +.+.+.. ...++.||.++|+.++.+|+++..|++-+...|.
T Consensus 207 ~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 207 HVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred ccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHH
Confidence 15899999999998 2222211 2347789999999999999999999999999998
Q ss_pred HHHHHH
Q 027382 174 TEIYRI 179 (224)
Q Consensus 174 ~~i~~~ 179 (224)
+.++..
T Consensus 287 hr~yG~ 292 (473)
T KOG3905|consen 287 HRSYGF 292 (473)
T ss_pred HHhcCc
Confidence 887654
No 278
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.49 E-value=1.9e-13 Score=122.90 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=88.3
Q ss_pred cccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-----------C---CcceeeEEEEEEEC---------
Q 027382 4 LYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-----------A---TIGVEFQTKTLSID--------- 60 (224)
Q Consensus 4 ~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-----------~---~~~~~~~~~~~~~~--------- 60 (224)
+...++++.+...+|+|+|+.++|||||+++|+...-..... + ..|.++....+.+.
T Consensus 8 ~~~~~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~ 87 (843)
T PLN00116 8 ELRRIMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLK 87 (843)
T ss_pred HHHHHhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccc
Confidence 344567788899999999999999999999998644210000 0 01233332222221
Q ss_pred -------CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382 61 -------HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133 (224)
Q Consensus 61 -------~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 133 (224)
...+.+.++||||+..|.......++.+|++|+|+|+.+.-......-| ..+.. .++|+++++||+|+.
T Consensus 88 ~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 88 DFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred ccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHH---CCCCEEEEEECCccc
Confidence 2367889999999999988889999999999999999975444433333 22322 368999999999985
No 279
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.48 E-value=4.3e-13 Score=119.21 Aligned_cols=128 Identities=14% Similarity=0.142 Sum_probs=87.3
Q ss_pred CCcccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-----------C---CcceeeEEEEE----EECCeE
Q 027382 2 SNLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-----------A---TIGVEFQTKTL----SIDHKT 63 (224)
Q Consensus 2 ~~~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-----------~---~~~~~~~~~~~----~~~~~~ 63 (224)
.+.+..++.+.+...+|+++|+.++|||||+++|+...-..... + ..++++....+ ..++..
T Consensus 7 ~~~~~~~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~ 86 (731)
T PRK07560 7 VEKILELMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKE 86 (731)
T ss_pred HHHHHHHhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCc
Confidence 34455667778888899999999999999999998632111100 0 01222222211 124457
Q ss_pred EEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382 64 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133 (224)
Q Consensus 64 ~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 133 (224)
+.+.++||||+..+.......++.+|++++|+|+...........| ....+. +.|.++++||+|+.
T Consensus 87 ~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 87 YLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred EEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHHc---CCCeEEEEECchhh
Confidence 8899999999998888888899999999999999875333322223 222222 46789999999975
No 280
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.48 E-value=3.7e-13 Score=110.30 Aligned_cols=165 Identities=18% Similarity=0.171 Sum_probs=114.1
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh----hhh-----hH
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY----RAV-----TS 82 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~~-----~~ 82 (224)
-+..-.++|+|.|++|||||++.+........+.++.+.....- .++.....++++||||.-.. +.. ..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 45666789999999999999999998887777666543333322 23456778999999992111 111 11
Q ss_pred hHhcCCCEEEEEEeCCC--hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHH---HHHHHHHcCCeEEEE
Q 027382 83 AYYRGAVGAMLVYDMTK--RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTED---AQEFAQRENLFFMET 157 (224)
Q Consensus 83 ~~~~~~d~vi~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (224)
...+--.+|+|+.|++. ..|......++..++.... +.|+|+|+||+|+.....++.+. +......-+++++++
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 12222346999999987 4566666667766665543 79999999999986544444432 334444455899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHH
Q 027382 158 SALEATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 158 s~~~~~~v~~~~~~i~~~i~~~ 179 (224)
|..+.+|+-++-....+.++..
T Consensus 322 S~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred cccchhceeeHHHHHHHHHHHH
Confidence 9999999998888777766544
No 281
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.47 E-value=2e-12 Score=105.02 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=87.5
Q ss_pred CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhcC-CCCCcEEEEEeC
Q 027382 61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR----------QSFDHMARWLDELRGHA-DKNIVIMLIGNK 129 (224)
Q Consensus 61 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK 129 (224)
.....+.+||.+|+...+..|..++.+++++|||+|+++. ..+.+....+..+.+.. -.+.|+++++||
T Consensus 181 ~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK 260 (342)
T smart00275 181 VKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNK 260 (342)
T ss_pred ECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEec
Confidence 3456789999999999999999999999999999999973 24555555555554432 257999999999
Q ss_pred CCCCCC--------------C-CCCHHHHHHHHHH-----c------CCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 027382 130 CDLGSL--------------R-AVPTEDAQEFAQR-----E------NLFFMETSALEATNVETAFLTVLTEIYRIIS 181 (224)
Q Consensus 130 ~D~~~~--------------~-~~~~~~~~~~~~~-----~------~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~ 181 (224)
.|+..+ . ..+.+.+..|... . .+..+.++|.+-.++..+|+.+.+.|.+...
T Consensus 261 ~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 261 IDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL 338 (342)
T ss_pred HHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence 997311 0 1233444444322 1 1345778899999999999999988877653
No 282
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.47 E-value=9e-13 Score=103.88 Aligned_cols=152 Identities=24% Similarity=0.232 Sum_probs=109.9
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCC----------Cc---------------------cCCcceeeEEEEEEEC
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSV----------DS---------------------KATIGVEFQTKTLSID 60 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~----------~~---------------------~~~~~~~~~~~~~~~~ 60 (224)
....++.+.+|+..=||||||-+|+...... .+ ..-.|+++......+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 4567899999999999999999998743211 00 0112777777777777
Q ss_pred CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCH
Q 027382 61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPT 140 (224)
Q Consensus 61 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 140 (224)
....+|.+-|||||+.|...+..-..-||++|+++|+-.. -+++.++ ...+....+ =..+++.+||+||.+..+...
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrR-Hs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRR-HSFIASLLG-IRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHH-HHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence 8889999999999999999888889999999999999542 2222222 222222222 245899999999987655444
Q ss_pred HH----HHHHHHHcCC---eEEEEcCCCCCCHH
Q 027382 141 ED----AQEFAQRENL---FFMETSALEATNVE 166 (224)
Q Consensus 141 ~~----~~~~~~~~~~---~~~~~s~~~~~~v~ 166 (224)
++ ...|+..+++ .++++||..|+|+-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 43 3467777775 59999999998764
No 283
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.47 E-value=7.8e-13 Score=100.86 Aligned_cols=158 Identities=15% Similarity=0.140 Sum_probs=84.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCccee--eEEEEEEECCeEEEEEEEeCCChh-------hhhhhh----H
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVE--FQTKTLSIDHKTVKAQIWDTAGQE-------RYRAVT----S 82 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~G~~-------~~~~~~----~ 82 (224)
.+|+|+|..|+||||++|.+++.............+ .......+ ....+.++||||-. ...... .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~--~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV--DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE--TTEEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee--cceEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 489999999999999999999988754432222222 22222334 44678999999921 111111 1
Q ss_pred hHhcCCCEEEEEEeCCCh-hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC----C---HHHHHHHHHHcCCeE
Q 027382 83 AYYRGAVGAMLVYDMTKR-QSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV----P---TEDAQEFAQRENLFF 154 (224)
Q Consensus 83 ~~~~~~d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----~---~~~~~~~~~~~~~~~ 154 (224)
...++.++++||+.+... +.-..+.+++..+.... .-..++|+.|..|......+ . ...++++.++.+-.|
T Consensus 79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~ 157 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRY 157 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEE
Confidence 234578999999999832 11222222332222111 12347888888876443321 0 123556667777778
Q ss_pred EEEcCC------CCCCHHHHHHHHHHHH
Q 027382 155 METSAL------EATNVETAFLTVLTEI 176 (224)
Q Consensus 155 ~~~s~~------~~~~v~~~~~~i~~~i 176 (224)
+.++.+ ....+.++|..+-+.+
T Consensus 158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv 185 (212)
T PF04548_consen 158 HVFNNKTKDKEKDESQVSELLEKIEEMV 185 (212)
T ss_dssp EECCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccchhhhHHHHHHHHHHHHHHH
Confidence 887766 2234555555544433
No 284
>PTZ00258 GTP-binding protein; Provisional
Probab=99.44 E-value=3.7e-12 Score=104.26 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=62.1
Q ss_pred CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCe---------------EEEEEEEeC
Q 027382 7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK---------------TVKAQIWDT 71 (224)
Q Consensus 7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~ 71 (224)
.+.+.....++|+++|.|+||||||+|+|.+........|..+.......+.+... ...+.++|+
T Consensus 13 ~~~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDt 92 (390)
T PTZ00258 13 VLLGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDI 92 (390)
T ss_pred hhhccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEEC
Confidence 34456678899999999999999999999887665444444333333333333211 335899999
Q ss_pred CChh-------hhhhhhHhHhcCCCEEEEEEeCC
Q 027382 72 AGQE-------RYRAVTSAYYRGAVGAMLVYDMT 98 (224)
Q Consensus 72 ~G~~-------~~~~~~~~~~~~~d~vi~v~d~~ 98 (224)
||-. .........++.+|++++|+|..
T Consensus 93 pGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 93 AGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 9932 12223344578899999999974
No 285
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.43 E-value=9.7e-12 Score=112.47 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=94.5
Q ss_pred CHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeE----------------EEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 27 GKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKT----------------VKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 27 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
+||||+.++.+..........++.++....+..+... -.+.+|||||++.+..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999999887765544444444444444433110 128999999999998888888889999
Q ss_pred EEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC----------------HHHHH----HH-
Q 027382 91 AMLVYDMTK---RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP----------------TEDAQ----EF- 146 (224)
Q Consensus 91 vi~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~----------------~~~~~----~~- 146 (224)
+++|+|+++ +.+.+.+ ..+... ++|+++++||+|+....... .+++. +.
T Consensus 553 vlLVVDa~~Gi~~qT~e~I----~~lk~~---~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAI----NILRQY---KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHH----HHHHHc---CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999987 3333332 223332 58999999999985321100 11111 01
Q ss_pred --HHHc---------------CCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382 147 --AQRE---------------NLFFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 147 --~~~~---------------~~~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
..++ .++++++||++|+|+++++..+...
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 1111 3478999999999999999877643
No 286
>PTZ00416 elongation factor 2; Provisional
Probab=99.43 E-value=6.8e-13 Score=119.18 Aligned_cols=125 Identities=19% Similarity=0.231 Sum_probs=86.0
Q ss_pred ccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc--------------CCcceeeEEE--EEEEC--------
Q 027382 5 YGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK--------------ATIGVEFQTK--TLSID-------- 60 (224)
Q Consensus 5 ~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~~~~~~~~~~--~~~~~-------- 60 (224)
.+.++++.+...+|+++|+.++|||||+++|+...-..... ...|+++... ...+.
T Consensus 9 ~~~~~~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~ 88 (836)
T PTZ00416 9 IREIMDNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDD 88 (836)
T ss_pred HHHHhhCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccC
Confidence 34456667788899999999999999999998733211000 0012222222 22222
Q ss_pred CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382 61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133 (224)
Q Consensus 61 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 133 (224)
.....+.++||||+..+.......++.+|++|+|+|+.+.-.... +..+..+.+. ++|+++++||+|+.
T Consensus 89 ~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~---~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 89 KQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQE---RIRPVLFINKVDRA 157 (836)
T ss_pred CCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHc---CCCEEEEEEChhhh
Confidence 126779999999999998888889999999999999987533332 3333444332 58999999999985
No 287
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.42 E-value=2.9e-12 Score=96.54 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=66.1
Q ss_pred EEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHH
Q 027382 64 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDA 143 (224)
Q Consensus 64 ~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~ 143 (224)
....++++.|......... . -+|.+|.|+|+.+.+.... .+...+ ...-++++||+|+.+......+.+
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 5667888888432222222 2 2688999999987655322 111112 112388999999974323334444
Q ss_pred HHHHHH--cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 144 QEFAQR--ENLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 144 ~~~~~~--~~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
.+..+. .+.+++++|+++|+|++++|+++.+.+
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 555554 457899999999999999999988654
No 288
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=9.3e-13 Score=102.61 Aligned_cols=162 Identities=21% Similarity=0.159 Sum_probs=111.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc---cCCcce------------------eeEEEEEEEC------CeEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDS---KATIGV------------------EFQTKTLSID------HKTVK 65 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~------------------~~~~~~~~~~------~~~~~ 65 (224)
...++|.++|+...|||||..+|.+--....+ ...+.+ ..+...-.+. .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 46899999999999999999999872211000 000000 0011111111 22367
Q ss_pred EEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHHH
Q 027382 66 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--VPTEDA 143 (224)
Q Consensus 66 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~ 143 (224)
+.++|.||++-.-+..-.-..-.|++++|++++.+..-.+.++.+..+.=.. -..++++-||+|+..... .+++++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 8899999999776666666667899999999998766666666555543322 244899999999964322 355677
Q ss_pred HHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 144 QEFAQR---ENLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 144 ~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
++|.+- .++|++++||..+.|++.+++.|...+
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 777765 457899999999999999988887776
No 289
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.40 E-value=7.5e-12 Score=101.55 Aligned_cols=153 Identities=17% Similarity=0.227 Sum_probs=97.7
Q ss_pred CcccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcC----CCCC----------CccCCcc---eeeEEE-------EEE
Q 027382 3 NLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARN----EFSV----------DSKATIG---VEFQTK-------TLS 58 (224)
Q Consensus 3 ~~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~----~~~~----------~~~~~~~---~~~~~~-------~~~ 58 (224)
|.+++++++....+-|+|+|+.++|||||+|+|.+. .... -.....| +|...+ .+.
T Consensus 5 ~iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~ 84 (492)
T TIGR02836 5 DIYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEIN 84 (492)
T ss_pred hHHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEe
Confidence 567888999999999999999999999999999987 3320 0111113 222222 222
Q ss_pred E-CCeEEEEEEEeCCChhhh--------hh---------------------hhHhHhc-CCCEEEEEE-eCC--C--hhh
Q 027382 59 I-DHKTVKAQIWDTAGQERY--------RA---------------------VTSAYYR-GAVGAMLVY-DMT--K--RQS 102 (224)
Q Consensus 59 ~-~~~~~~~~l~D~~G~~~~--------~~---------------------~~~~~~~-~~d~vi~v~-d~~--~--~~s 102 (224)
. ++....+.++||+|-... .. -....+. .+|..|+|. |.+ + ++.
T Consensus 85 ~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~ 164 (492)
T TIGR02836 85 INEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPRED 164 (492)
T ss_pred ccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCcccccccc
Confidence 2 355678999999992211 11 0334455 899999888 664 1 233
Q ss_pred HHH-HHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCC
Q 027382 103 FDH-MARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSAL 160 (224)
Q Consensus 103 ~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (224)
+.. -.+++..+++. ++|+++++|+.|.... ...+..+++..+++.+++.+|+.
T Consensus 165 y~~aEe~~i~eLk~~---~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~ 218 (492)
T TIGR02836 165 YVEAEERVIEELKEL---NKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVE 218 (492)
T ss_pred chHHHHHHHHHHHhc---CCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHH
Confidence 333 34566666654 7999999999994321 13444556666677776666653
No 290
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.38 E-value=1.6e-11 Score=102.98 Aligned_cols=164 Identities=20% Similarity=0.346 Sum_probs=111.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC--CeEEEEEEEeCCChhhhhhhhHhHhcCC--
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID--HKTVKAQIWDTAGQERYRAVTSAYYRGA-- 88 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~-- 88 (224)
...-.|+|+|..++||||||.+|.+.. .+.++.+..+....+.-. ....++.+|...|...+..+....+...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 345689999999999999999997654 234444544444433222 2335689999988766766665555422
Q ss_pred --CEEEEEEeCCChhhH-HHHHHHHHHHHhcC------------------------------------------------
Q 027382 89 --VGAMLVYDMTKRQSF-DHMARWLDELRGHA------------------------------------------------ 117 (224)
Q Consensus 89 --d~vi~v~d~~~~~s~-~~~~~~~~~~~~~~------------------------------------------------ 117 (224)
-++|+|+|.+.|..+ +.+..|+..++++.
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 358899999987553 45555543332220
Q ss_pred --------------CCCCcEEEEEeCCCCCC----CCC-------CCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382 118 --------------DKNIVIMLIGNKCDLGS----LRA-------VPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172 (224)
Q Consensus 118 --------------~~~~p~ilv~nK~D~~~----~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 172 (224)
+-++|++||++|+|... +.. .-.+.++.||..+|+.++.+|++...+++-++..|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 01379999999999621 111 11234778899999999999999999999888888
Q ss_pred HHHHHHH
Q 027382 173 LTEIYRI 179 (224)
Q Consensus 173 ~~~i~~~ 179 (224)
.+.++..
T Consensus 260 ~h~l~~~ 266 (472)
T PF05783_consen 260 LHRLYGF 266 (472)
T ss_pred HHHhccC
Confidence 8777654
No 291
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.37 E-value=1.1e-11 Score=86.16 Aligned_cols=114 Identities=32% Similarity=0.347 Sum_probs=82.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-CCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSK-ATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998777654443 3322 333345567788999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382 95 YDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 166 (224)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 166 (224)
++.++.++++.+ |...+....+.++|.++++||.|+.+...+..++.. .++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 999999988765 776666555567889999999998543333333333 34567788888874
No 292
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.37 E-value=2.6e-12 Score=99.91 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=77.6
Q ss_pred hhhhhhhHhHhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027382 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQ-SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF 153 (224)
Q Consensus 75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 153 (224)
+++..+.+.+++++|++++|||++++. ++..+.+|+..+.. .++|+++|+||+|+.+...+..+.++.+ ...+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 566777888999999999999999877 89999999987654 3699999999999965444333444444 457889
Q ss_pred EEEEcCCCCCCHHHHHHHHHH
Q 027382 154 FMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 154 ~~~~s~~~~~~v~~~~~~i~~ 174 (224)
++++||++|.|++++|..+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999988753
No 293
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.4e-11 Score=107.52 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=93.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc---c-------------CCcceeeEEEEEEECCe-EEEEEEEeCCCh
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS---K-------------ATIGVEFQTKTLSIDHK-TVKAQIWDTAGQ 74 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~---~-------------~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~ 74 (224)
.+..-+|.++|+..+|||||..+|+...-.... . ...|+++......+.+. ++.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 677889999999999999999999874322111 0 11277777777777777 599999999999
Q ss_pred hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
-+|.......++-+|++++|+|+.+.-....-.-|....+. ++|.++++||+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~----~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY----GVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc----CCCeEEEEECccccc
Confidence 99999999999999999999999986555544445444433 799999999999854
No 294
>PRK13768 GTPase; Provisional
Probab=99.36 E-value=8e-12 Score=97.67 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=68.1
Q ss_pred EEEEEeCCChhhh---hhhhHhHhc---C--CCEEEEEEeCCChhhHHHH--HHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 65 KAQIWDTAGQERY---RAVTSAYYR---G--AVGAMLVYDMTKRQSFDHM--ARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 65 ~~~l~D~~G~~~~---~~~~~~~~~---~--~d~vi~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
.+.+||+||+.+. +..+..+++ . .+++++|+|+......... ..|+...... ..+.|+++|+||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 6899999997653 223322322 2 8999999999754322222 1222222211 13689999999999865
Q ss_pred CCCCCHHHHHH----------------------------HHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 135 LRAVPTEDAQE----------------------------FAQREN--LFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 135 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
.... ++... .....+ .+++++|++++.|++++++++.+.+
T Consensus 177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 3221 11111 122223 4689999999999999999887665
No 295
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.35 E-value=1.1e-11 Score=94.20 Aligned_cols=152 Identities=11% Similarity=0.115 Sum_probs=84.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC--C----------CccCCcceeeEEEEEEE-C-------------------
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFS--V----------DSKATIGVEFQTKTLSI-D------------------- 60 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~--~----------~~~~~~~~~~~~~~~~~-~------------------- 60 (224)
..+..|+++|+.|+|||||+++++..... . ..+...-.......+.+ +
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 35788999999999999999999864110 0 00000000000000000 0
Q ss_pred CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCH
Q 027382 61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPT 140 (224)
Q Consensus 61 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 140 (224)
.....+.++|+.|.-... ..+....+..+.|+|+.+.+... ..... . ...|.++++||+|+.+......
T Consensus 100 ~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~--~~~~~-~-----~~~a~iiv~NK~Dl~~~~~~~~ 168 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP--LKYPG-M-----FKEADLIVINKADLAEAVGFDV 168 (207)
T ss_pred cCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh--hhhHh-H-----HhhCCEEEEEHHHccccchhhH
Confidence 012356677777721000 01112234455677776533211 11111 1 1356799999999965333234
Q ss_pred HHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHH
Q 027382 141 EDAQEFAQREN--LFFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 141 ~~~~~~~~~~~--~~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
.+..+..++.+ .+++++|++++.|++++|+++.+.
T Consensus 169 ~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 169 EKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44555555543 789999999999999999998764
No 296
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.35 E-value=2.4e-11 Score=97.32 Aligned_cols=131 Identities=19% Similarity=0.237 Sum_probs=91.2
Q ss_pred eEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhh-------HHHHHHHHHHHHhcCC----CC
Q 027382 52 FQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS-------FDHMARWLDELRGHAD----KN 120 (224)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s-------~~~~~~~~~~~~~~~~----~~ 120 (224)
.....+.+......+.++|.+||...+.-|.+++.+++++|||+++++-+. ...+.+-+..+...++ .+
T Consensus 183 ~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~ 262 (354)
T KOG0082|consen 183 TGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFAN 262 (354)
T ss_pred CCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccccc
Confidence 333444455566889999999999999999999999999999999987322 2233333333333332 67
Q ss_pred CcEEEEEeCCCCCCC--------------C-CCCHHHHHHHHHH----------cCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382 121 IVIMLIGNKCDLGSL--------------R-AVPTEDAQEFAQR----------ENLFFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 121 ~p~ilv~nK~D~~~~--------------~-~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
.++++++||.|+-++ . .-..+++..+... ..+.++.+.|.+-.+|+.+|..+.+.
T Consensus 263 tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~ 342 (354)
T KOG0082|consen 263 TSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDT 342 (354)
T ss_pred CcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHH
Confidence 999999999998321 1 1234455444322 12446677899999999999999999
Q ss_pred HHHHHhc
Q 027382 176 IYRIISK 182 (224)
Q Consensus 176 i~~~~~~ 182 (224)
|.+...+
T Consensus 343 Ii~~nlk 349 (354)
T KOG0082|consen 343 IIQNNLK 349 (354)
T ss_pred HHHHHHH
Confidence 8776543
No 297
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.4e-11 Score=93.75 Aligned_cols=175 Identities=17% Similarity=0.131 Sum_probs=116.7
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCC-------------C-CCccCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027382 8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEF-------------S-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73 (224)
Q Consensus 8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 73 (224)
.+.....-+||..+|+..-|||||..++..--. . .......|+++....+.+......+..+|+||
T Consensus 5 kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPG 84 (394)
T COG0050 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPG 84 (394)
T ss_pred hhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCC
Confidence 455677889999999999999999887754110 0 11123447888888888888888999999999
Q ss_pred hhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCC---CCHHHHHHHHHH
Q 027382 74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRA---VPTEDAQEFAQR 149 (224)
Q Consensus 74 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~---~~~~~~~~~~~~ 149 (224)
+..|-.....-...+|+.|+|+++++..-- +.++.+-..++. .+| +++++||+|+.+..+ .-..+++++..+
T Consensus 85 HaDYvKNMItgAaqmDgAILVVsA~dGpmP-qTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~ 160 (394)
T COG0050 85 HADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred hHHHHHHHhhhHHhcCccEEEEEcCCCCCC-cchhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence 999988888888899999999999983322 233322222322 454 788899999976432 223457788888
Q ss_pred cCC-----eEEEEcCCCC-CCHHHHHHHHHHHHHHHHhcccCCc
Q 027382 150 ENL-----FFMETSALEA-TNVETAFLTVLTEIYRIISKKSLTA 187 (224)
Q Consensus 150 ~~~-----~~~~~s~~~~-~~v~~~~~~i~~~i~~~~~~~~~~~ 187 (224)
+++ |++.-|+... +|-.. +..-+..++........++
T Consensus 161 y~f~gd~~Pii~gSal~ale~~~~-~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 161 YGFPGDDTPIIRGSALKALEGDAK-WEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred cCCCCCCcceeechhhhhhcCCcc-hHHHHHHHHHHHHhcCCCC
Confidence 876 4566665432 22222 3333444555544444443
No 298
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.33 E-value=1.1e-10 Score=94.55 Aligned_cols=83 Identities=17% Similarity=0.144 Sum_probs=55.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCe---------------EEEEEEEeCCChh-----
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK---------------TVKAQIWDTAGQE----- 75 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~----- 75 (224)
++|+++|.|+||||||+|+|.+........|..+.+...-.+.+... ...+.++|+||-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999997754333333232222222333221 1358999999932
Q ss_pred --hhhhhhHhHhcCCCEEEEEEeCC
Q 027382 76 --RYRAVTSAYYRGAVGAMLVYDMT 98 (224)
Q Consensus 76 --~~~~~~~~~~~~~d~vi~v~d~~ 98 (224)
.........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 12223344468999999999984
No 299
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.2e-11 Score=100.04 Aligned_cols=138 Identities=18% Similarity=0.216 Sum_probs=99.8
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc--------------------CCcceeeEEEEEEECCeEEEEEEE
Q 027382 10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK--------------------ATIGVEFQTKTLSIDHKTVKAQIW 69 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~ 69 (224)
+...+.-..+|+-+|.+|||||-.+|+--.-..... ...|+.+.+..+.+++.+..+++.
T Consensus 7 ~Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLL 86 (528)
T COG4108 7 QEVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLL 86 (528)
T ss_pred HHHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEecc
Confidence 334455567899999999999999986532211111 112788888888889999999999
Q ss_pred eCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027382 70 DTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR 149 (224)
Q Consensus 70 D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~ 149 (224)
||||++.+..-....+..+|.++.|+|+...-. ....++++.++- .++|++-++||.|.+.. .+.+.+.+.-++
T Consensus 87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE-~qT~KLfeVcrl---R~iPI~TFiNKlDR~~r--dP~ELLdEiE~~ 160 (528)
T COG4108 87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIE-PQTLKLFEVCRL---RDIPIFTFINKLDREGR--DPLELLDEIEEE 160 (528)
T ss_pred CCCCccccchhHHHHHHhhheeeEEEecccCcc-HHHHHHHHHHhh---cCCceEEEeeccccccC--ChHHHHHHHHHH
Confidence 999999998888888999999999999986322 223344444443 37999999999998642 235556666666
Q ss_pred cCCe
Q 027382 150 ENLF 153 (224)
Q Consensus 150 ~~~~ 153 (224)
+++.
T Consensus 161 L~i~ 164 (528)
T COG4108 161 LGIQ 164 (528)
T ss_pred hCcc
Confidence 6543
No 300
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.4e-10 Score=91.54 Aligned_cols=166 Identities=15% Similarity=0.149 Sum_probs=100.3
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCC----CCCCccC-CcceeeEE--EEEEE-------CCeEEEEEEEeCCChhh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNE----FSVDSKA-TIGVEFQT--KTLSI-------DHKTVKAQIWDTAGQER 76 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~----~~~~~~~-~~~~~~~~--~~~~~-------~~~~~~~~l~D~~G~~~ 76 (224)
..+..+++.++|+..+|||||.++|..-. ++..... ..|++... ..+.+ .+...++.++|+||+..
T Consensus 3 ~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas 82 (522)
T KOG0461|consen 3 SPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS 82 (522)
T ss_pred CCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH
Confidence 34567999999999999999999997532 2111111 11222221 11111 24567889999999876
Q ss_pred hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHH-HHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH------
Q 027382 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWL-DELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR------ 149 (224)
Q Consensus 77 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~------ 149 (224)
.-..........|..++|+|+...-.-+.++-++ ..+. -...++|+||+|...+.+. ...+++.+++
T Consensus 83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~lpE~qr-~ski~k~~kk~~KtLe 156 (522)
T KOG0461|consen 83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVLPENQR-ASKIEKSAKKVRKTLE 156 (522)
T ss_pred HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccccchhh-hhHHHHHHHHHHHHHH
Confidence 6555555556679999999998755544444432 2222 1236788899887543221 1222222222
Q ss_pred -----cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhc
Q 027382 150 -----ENLFFMETSALEATNVETAFLTVLTEIYRIISK 182 (224)
Q Consensus 150 -----~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~~ 182 (224)
-+.|++++|++.|.--.+.+..+.+.+.++...
T Consensus 157 ~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 157 STGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred hcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 136899999999955555555555555555443
No 301
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.32 E-value=5.3e-11 Score=91.55 Aligned_cols=141 Identities=15% Similarity=0.125 Sum_probs=84.6
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
......|+++|.+|+|||||++.+.+...........|. ..+ .......+.++||||.. .......+.+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH---HHHHHHHHhcCEE
Confidence 345678999999999999999999875321111111121 111 22356678999999864 2233446889999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcE-EEEEeCCCCCCCCCCC---HHHHHH-HHHH--cCCeEEEEcCCCCCC
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVI-MLIGNKCDLGSLRAVP---TEDAQE-FAQR--ENLFFMETSALEATN 164 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~~~---~~~~~~-~~~~--~~~~~~~~s~~~~~~ 164 (224)
++|+|++....... ...+..+... +.|. ++|+||+|+......- ..++++ +..+ .+.+++.+||++...
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 99999986433222 2333444332 4664 4599999985322110 112222 2222 235799999998743
No 302
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.32 E-value=3.2e-11 Score=97.05 Aligned_cols=106 Identities=11% Similarity=0.064 Sum_probs=68.3
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CH
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PT 140 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~ 140 (224)
.+.+.++||+|..... ......+|.+++|.+...++.+..... .+.+ ..-++|+||+|+.+.... ..
T Consensus 148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHH
Confidence 4778999999965222 224667999999987555555544332 1111 224899999998643211 11
Q ss_pred HHHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382 141 EDAQEFAQR-------ENLFFMETSALEATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 141 ~~~~~~~~~-------~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~ 179 (224)
.+++..... +..+++.+|++++.|++++++.+.+.+...
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 223322222 225799999999999999999998876533
No 303
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=6.5e-12 Score=104.79 Aligned_cols=155 Identities=21% Similarity=0.221 Sum_probs=108.5
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-----------------------------CccCCcceeeEEEEEEECC
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSV-----------------------------DSKATIGVEFQTKTLSIDH 61 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 61 (224)
+....+.++++|+..+|||||+-+|+..--.. ......|.+.......++.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 34477899999999999999999987632111 1112236777777777778
Q ss_pred eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHH-------HHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDH-------MARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
....+.++|.||+..|......-...+|+.++|+|++- ..|+. .++....++.. + -..+++++||.|+.+
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~L-g-i~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSL-G-ISQLIVAINKMDLVS 329 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHc-C-cceEEEEeecccccC
Confidence 88899999999999998888888889999999999975 22222 22222223322 2 244788999999987
Q ss_pred CCCCCHHHHH----HHH-HHcC-----CeEEEEcCCCCCCHHHH
Q 027382 135 LRAVPTEDAQ----EFA-QREN-----LFFMETSALEATNVETA 168 (224)
Q Consensus 135 ~~~~~~~~~~----~~~-~~~~-----~~~~~~s~~~~~~v~~~ 168 (224)
..+...++++ .|. +..| +.|+++|+.+|+|+-..
T Consensus 330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 5555555544 333 2223 46999999999986544
No 304
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.30 E-value=8.2e-11 Score=86.38 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=44.7
Q ss_pred EEEEeCCChh----hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 027382 66 AQIWDTAGQE----RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKC 130 (224)
Q Consensus 66 ~~l~D~~G~~----~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 130 (224)
+.|+|+||-. .....+..+++.+|++|+|.+++...+-.....+....... ...+++|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 7899999943 23466788889999999999999866655555565555543 23388888884
No 305
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.29 E-value=7.7e-13 Score=102.21 Aligned_cols=111 Identities=15% Similarity=0.091 Sum_probs=57.8
Q ss_pred EEEEEeCCChhhhhhhhHhHh--------cCCCEEEEEEeCCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC
Q 027382 65 KAQIWDTAGQERYRAVTSAYY--------RGAVGAMLVYDMTKRQS-FDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135 (224)
Q Consensus 65 ~~~l~D~~G~~~~~~~~~~~~--------~~~d~vi~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 135 (224)
.+.++|||||.++...+.... ...-++++++|..-... ...+..++-.+.-....+.|.+.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 689999999998876665554 44567888999764322 222222222222111237999999999999641
Q ss_pred CC-------CC------------HHHHHHHHHH---cC-C-eEEEEcCCCCCCHHHHHHHHHHH
Q 027382 136 RA-------VP------------TEDAQEFAQR---EN-L-FFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 136 ~~-------~~------------~~~~~~~~~~---~~-~-~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
.. .. ....++.+.- .+ . .++++|+.+++++.+++..+-+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 10 00 0001112221 22 3 69999999999999998876543
No 306
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.28 E-value=5.3e-12 Score=94.09 Aligned_cols=145 Identities=19% Similarity=0.289 Sum_probs=90.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECC-eEEEEEEEeCCChhhh-----hhhhHhHhcC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDH-KTVKAQIWDTAGQERY-----RAVTSAYYRG 87 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~-----~~~~~~~~~~ 87 (224)
.-||+++|.+|+||||+-..++.+...- ...+ |.++....-.+.. +...+.+||++|++.+ .......+.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rl--g~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRL--GATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhcc--CCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 4589999999999999988877543221 1122 2323333322322 3478899999998854 3345667899
Q ss_pred CCEEEEEEeCCChhhHHHHHHH---HHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHH----HHHHHHHcCCeEEEEc
Q 027382 88 AVGAMLVYDMTKRQSFDHMARW---LDELRGHADKNIVIMLIGNKCDLGSLRA--VPTED----AQEFAQRENLFFMETS 158 (224)
Q Consensus 88 ~d~vi~v~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~----~~~~~~~~~~~~~~~s 158 (224)
.+++++|||++..+-..++..+ ++.+.+.. +...+.+..+|.|+..... ...++ +..+....++.++++|
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 9999999999986655554443 33444433 3566888899999954322 11222 2222233345577777
Q ss_pred CCCC
Q 027382 159 ALEA 162 (224)
Q Consensus 159 ~~~~ 162 (224)
..+.
T Consensus 161 iwDe 164 (295)
T KOG3886|consen 161 IWDE 164 (295)
T ss_pred hhhH
Confidence 7644
No 307
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.28 E-value=1.5e-11 Score=89.83 Aligned_cols=148 Identities=16% Similarity=0.117 Sum_probs=88.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCC-cceeeEE-------------EEEEE--------------------
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKAT-IGVEFQT-------------KTLSI-------------------- 59 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~-------------~~~~~-------------------- 59 (224)
..+.|.|.|++|||||+|+.+++..-... |... +..+.++ ..+.+
T Consensus 12 ~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l 90 (202)
T COG0378 12 PMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEEL 90 (202)
T ss_pred ceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHH
Confidence 36999999999999999999987533211 1111 0011111 00000
Q ss_pred --CCeEEEEEEEeCCChhhhhhhhHhHhcCCC-EEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCC
Q 027382 60 --DHKTVKAQIWDTAGQERYRAVTSAYYRGAV-GAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSL 135 (224)
Q Consensus 60 --~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d-~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~ 135 (224)
......+.+++..|+ ...... +.-.| .-|+|+|.+..+-.. ++..+ -...=++|+||.|+.+.
T Consensus 91 ~~~~~~~Dll~iEs~GN--L~~~~s--p~L~d~~~v~VidvteGe~~P---------~K~gP~i~~aDllVInK~DLa~~ 157 (202)
T COG0378 91 VLDFPDLDLLFIESVGN--LVCPFS--PDLGDHLRVVVIDVTEGEDIP---------RKGGPGIFKADLLVINKTDLAPY 157 (202)
T ss_pred hhcCCcCCEEEEecCcc--eecccC--cchhhceEEEEEECCCCCCCc---------ccCCCceeEeeEEEEehHHhHHH
Confidence 011245566666661 111111 11123 667777777643222 11011 01134889999999877
Q ss_pred CCCCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHH
Q 027382 136 RAVPTEDAQEFAQREN--LFFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 136 ~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
...+.+.+.+-+++.+ .+++++|.++|+|+++++.++...
T Consensus 158 v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 158 VGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred hCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 7777788888877754 789999999999999998887654
No 308
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2.9e-11 Score=103.31 Aligned_cols=163 Identities=18% Similarity=0.205 Sum_probs=107.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC----------------CeEEEEEEEeCCChhhhhhh
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID----------------HKTVKAQIWDTAGQERYRAV 80 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~D~~G~~~~~~~ 80 (224)
=+||+|+..+|||-|+..+.+.+........+...+....+... ..---+.++||||++.|..+
T Consensus 477 IcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnl 556 (1064)
T KOG1144|consen 477 ICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNL 556 (1064)
T ss_pred eEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhh
Confidence 38999999999999999999876655444433222222222111 11123789999999999999
Q ss_pred hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC------CC----------CHHH--
Q 027382 81 TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR------AV----------PTED-- 142 (224)
Q Consensus 81 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------~~----------~~~~-- 142 (224)
.......||.+|+|+|+...-.-. ...-++.++.. +.|+|+.+||+|..-.. .+ ...+
T Consensus 557 RsrgsslC~~aIlvvdImhGlepq-tiESi~lLR~r---ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~ 632 (1064)
T KOG1144|consen 557 RSRGSSLCDLAILVVDIMHGLEPQ-TIESINLLRMR---KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFK 632 (1064)
T ss_pred hhccccccceEEEEeehhccCCcc-hhHHHHHHHhc---CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHH
Confidence 999999999999999997521111 12233444443 79999999999973211 00 0011
Q ss_pred ------HHHHHHH-cC-------------CeEEEEcCCCCCCHHHHHHHHHHHHHHHHhcc
Q 027382 143 ------AQEFAQR-EN-------------LFFMETSALEATNVETAFLTVLTEIYRIISKK 183 (224)
Q Consensus 143 ------~~~~~~~-~~-------------~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~~~ 183 (224)
+.+|+.. ++ +.++++||.+|+||.+++.+|++.....+..+
T Consensus 633 ~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k 693 (1064)
T KOG1144|consen 633 ERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK 693 (1064)
T ss_pred HHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 1122221 11 13678999999999999999998776665543
No 309
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.28 E-value=2.2e-10 Score=90.68 Aligned_cols=135 Identities=16% Similarity=0.286 Sum_probs=74.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc----------cCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDS----------KATIGVEFQTKTLSIDHKTVKAQIWDTAGQER------- 76 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~------- 76 (224)
..++|+|+|.+|+|||||||.|++....... ..+.........+.-++..+.+.++||||-..
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4689999999999999999999996543321 11112222333334467889999999999110
Q ss_pred hh-------hhhHhHh-------------cCCCEEEEEEeCCChhhHHH-HHHHHHHHHhcCCCCCcEEEEEeCCCCCCC
Q 027382 77 YR-------AVTSAYY-------------RGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCDLGSL 135 (224)
Q Consensus 77 ~~-------~~~~~~~-------------~~~d~vi~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 135 (224)
+. .....++ ...|+++|+++++. ..+.. -...+..+.+ .+++|-|+.|+|..
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~Di~~mk~Ls~----~vNvIPvIaKaD~l-- 155 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPLDIEFMKRLSK----RVNVIPVIAKADTL-- 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HHHHHHHHHHTT----TSEEEEEESTGGGS--
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHHHHHHHHHhcc----cccEEeEEeccccc--
Confidence 00 0001111 36789999999876 22221 2234455544 57799999999974
Q ss_pred CCCCHHHHHH-------HHHHcCCeEEEEc
Q 027382 136 RAVPTEDAQE-------FAQRENLFFMETS 158 (224)
Q Consensus 136 ~~~~~~~~~~-------~~~~~~~~~~~~s 158 (224)
+.+++.. -...+++.++...
T Consensus 156 ---t~~el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 156 ---TPEELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp ----HHHHHHHHHHHHHHHHHTT--S----
T ss_pred ---CHHHHHHHHHHHHHHHHHcCceeeccc
Confidence 3444433 3445677665543
No 310
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.6e-11 Score=102.55 Aligned_cols=124 Identities=22% Similarity=0.276 Sum_probs=91.5
Q ss_pred ccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCC---------------cceeeEEEEE-----EECCeEE
Q 027382 5 YGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKAT---------------IGVEFQTKTL-----SIDHKTV 64 (224)
Q Consensus 5 ~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~---------------~~~~~~~~~~-----~~~~~~~ 64 (224)
+-.++...+...+|+++|+-++|||+|+..|....-+..+... .|.++..... +.+++.+
T Consensus 118 l~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~ 197 (971)
T KOG0468|consen 118 LAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSY 197 (971)
T ss_pred HHHhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCcee
Confidence 3456778899999999999999999999999876543321111 1333322222 2256788
Q ss_pred EEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 027382 65 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132 (224)
Q Consensus 65 ~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 132 (224)
-++++||||+-.+.......++.+|++++|+|+.+.-.+..- +.++... ..+.|+++|+||.|.
T Consensus 198 l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhai---q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 198 LMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAI---QNRLPIVVVINKVDR 261 (971)
T ss_pred eeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHH---hccCcEEEEEehhHH
Confidence 999999999999988899999999999999999986665533 3332222 237999999999996
No 311
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.26 E-value=3.7e-11 Score=91.95 Aligned_cols=171 Identities=15% Similarity=0.133 Sum_probs=95.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCC---Cc----cCCcceeeEEEEEEE-------------------------
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSV---DS----KATIGVEFQTKTLSI------------------------- 59 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~---~~----~~~~~~~~~~~~~~~------------------------- 59 (224)
.+.++-|+|+|..|||||||+++|....... .| +|.+..--+...+++
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 4567789999999999999999997632211 11 111100000000100
Q ss_pred ----------------CCeEEEEEEEeCCChhhh------hhhhHhHhc--CCCEEEEEEeCCChhh-HHHHHHHHHHHH
Q 027382 60 ----------------DHKTVKAQIWDTAGQERY------RAVTSAYYR--GAVGAMLVYDMTKRQS-FDHMARWLDELR 114 (224)
Q Consensus 60 ----------------~~~~~~~~l~D~~G~~~~------~~~~~~~~~--~~d~vi~v~d~~~~~s-~~~~~~~~~~~~ 114 (224)
......+.++||||+-+. .+++...+. ..-++++|+|.....+ ...+...+-...
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 022466889999996543 222222222 2345777887654222 122222222222
Q ss_pred hcCCCCCcEEEEEeCCCCCCCCCC-----CHHHHHHHHH--------------------H-cCCeEEEEcCCCCCCHHHH
Q 027382 115 GHADKNIVIMLIGNKCDLGSLRAV-----PTEDAQEFAQ--------------------R-ENLFFMETSALEATNVETA 168 (224)
Q Consensus 115 ~~~~~~~p~ilv~nK~D~~~~~~~-----~~~~~~~~~~--------------------~-~~~~~~~~s~~~~~~v~~~ 168 (224)
-.+...+|+|++.||.|+.+.... +.+..++..+ . .++..+.+|+.+|.|.+++
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf 255 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDF 255 (366)
T ss_pred HHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHH
Confidence 223347999999999999653210 0111111111 1 2356889999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 027382 169 FLTVLTEIYRIISK 182 (224)
Q Consensus 169 ~~~i~~~i~~~~~~ 182 (224)
|..+-..+-+....
T Consensus 256 ~~av~~~vdEy~~~ 269 (366)
T KOG1532|consen 256 FTAVDESVDEYEEE 269 (366)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998877555433
No 312
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.23 E-value=6e-11 Score=96.26 Aligned_cols=157 Identities=11% Similarity=0.148 Sum_probs=75.0
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCC--cceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHh-----
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKAT--IGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSA----- 83 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~----- 83 (224)
.+..++|+|+|.+|+|||||||+|.+-... +...++ +.++.....+.. -..-.+.+||.||..........
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 457899999999999999999999773322 222221 112222222211 12225899999994433222222
Q ss_pred HhcCCCEEEEEEeCCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCC-------CCCCCCH----HHHHHHHHH--
Q 027382 84 YYRGAVGAMLVYDMTKRQSFDHMAR-WLDELRGHADKNIVIMLIGNKCDLG-------SLRAVPT----EDAQEFAQR-- 149 (224)
Q Consensus 84 ~~~~~d~vi~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~D~~-------~~~~~~~----~~~~~~~~~-- 149 (224)
-+...|.+|++.+-. +....- ....+.+. +.|+++|-+|+|.. ..+..+. +++++.+.+
T Consensus 111 ~~~~yD~fiii~s~r----f~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 111 KFYRYDFFIIISSER----FTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp TGGG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred cccccCEEEEEeCCC----CchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 356789777766532 222222 22333332 68899999999961 1122232 233333333
Q ss_pred --cCC---eEEEEcCCCCCC--HHHHHHHHHHHH
Q 027382 150 --ENL---FFMETSALEATN--VETAFLTVLTEI 176 (224)
Q Consensus 150 --~~~---~~~~~s~~~~~~--v~~~~~~i~~~i 176 (224)
.++ ++|-+|..+-.. +..+.+.+...+
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL 217 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDL 217 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence 233 488889877544 555555555444
No 313
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.23 E-value=5e-11 Score=95.59 Aligned_cols=160 Identities=18% Similarity=0.106 Sum_probs=92.2
Q ss_pred CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCC----CC-------CCccCCcc----e-----------eeEEEEEEE-
Q 027382 7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNE----FS-------VDSKATIG----V-----------EFQTKTLSI- 59 (224)
Q Consensus 7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~----~~-------~~~~~~~~----~-----------~~~~~~~~~- 59 (224)
.+.........|+|+|++|+|||||++.+.... .. +.+..+.+ . .........
T Consensus 26 ~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (300)
T TIGR00750 26 RIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTR 105 (300)
T ss_pred hCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCcc
Confidence 344455667888999999999999999976521 00 00100000 0 000000000
Q ss_pred -----------------CCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc
Q 027382 60 -----------------DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV 122 (224)
Q Consensus 60 -----------------~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 122 (224)
+...+.+.++||+|.... ....+..+|.++++.... +.+++..+...+. ..|
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~-----~~~ 174 (300)
T TIGR00750 106 GHLGGLSQATRELILLLDAAGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPG---TGDDLQGIKAGLM-----EIA 174 (300)
T ss_pred ccccchhHHHHHHHHHHHhCCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCC---ccHHHHHHHHHHh-----hhc
Confidence 112578899999985422 223566788888885443 3333333333332 467
Q ss_pred EEEEEeCCCCCCCCCCCH--H----HHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382 123 IMLIGNKCDLGSLRAVPT--E----DAQEFAQR---ENLFFMETSALEATNVETAFLTVLTEIY 177 (224)
Q Consensus 123 ~ilv~nK~D~~~~~~~~~--~----~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~i~ 177 (224)
.++++||+|+........ . ....+..+ +..+++++|++++.|++++++++.+...
T Consensus 175 ~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 175 DIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred cEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 799999999864321100 0 01111111 2246899999999999999999987643
No 314
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.20 E-value=5.7e-10 Score=95.61 Aligned_cols=123 Identities=12% Similarity=0.123 Sum_probs=73.2
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh----------hhh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY----------RAV 80 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~ 80 (224)
+-...++|+|+|.+|+||||++|.|++...........+++.. ...........+.++||||-... ...
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~ 192 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSS 192 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHH
Confidence 3456789999999999999999999997643332211122221 12211123467999999994422 111
Q ss_pred hHhHhc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCC--CCcEEEEEeCCCCCC
Q 027382 81 TSAYYR--GAVGAMLVYDMTKRQSFDHMARWLDELRGHADK--NIVIMLIGNKCDLGS 134 (224)
Q Consensus 81 ~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~D~~~ 134 (224)
...++. .+|++|||..++.......-..+++.+.+..+. -..+|||.|+.|...
T Consensus 193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 222333 589999998876432221222444444444431 244788899999753
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.19 E-value=4.8e-10 Score=86.40 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=43.5
Q ss_pred EEEEEEeCCChh-------------hhhhhhHhHhc-CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 027382 64 VKAQIWDTAGQE-------------RYRAVTSAYYR-GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNK 129 (224)
Q Consensus 64 ~~~~l~D~~G~~-------------~~~~~~~~~~~-~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK 129 (224)
..+.++|+||-. ....+...+++ ..+.+++|+|+...-.-....++...+.. ...++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence 468899999942 12345666777 44689999988652222222233333332 36889999999
Q ss_pred CCCCC
Q 027382 130 CDLGS 134 (224)
Q Consensus 130 ~D~~~ 134 (224)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99864
No 316
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.19 E-value=7.8e-10 Score=83.80 Aligned_cols=155 Identities=22% Similarity=0.195 Sum_probs=100.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-------hhhhHhHh
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY-------RAVTSAYY 85 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~ 85 (224)
...-+|+++|.|.+|||||+..+..-........+ ++.....-.+.+.+-.+++.|.||.-+- ........
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeF--TTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEF--TTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceee--eEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEe
Confidence 34568999999999999999999875543332222 2222222223445667899999993221 33345567
Q ss_pred cCCCEEEEEEeCCChhhHHH-HHHHHHHHHhc------------------------------------------------
Q 027382 86 RGAVGAMLVYDMTKRQSFDH-MARWLDELRGH------------------------------------------------ 116 (224)
Q Consensus 86 ~~~d~vi~v~d~~~~~s~~~-~~~~~~~~~~~------------------------------------------------ 116 (224)
+.||++++|.|++..+.-.. +++.+..+.-.
T Consensus 138 rtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naev 217 (364)
T KOG1486|consen 138 RTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEV 217 (364)
T ss_pred ecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceE
Confidence 88999999999987554432 22222221100
Q ss_pred -----------------CCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 117 -----------------ADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 117 -----------------~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
...-++++.|-||+|. ++.+++.+++...+--+ +|+....|++.+++.+.+.+
T Consensus 218 l~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~-----vs~eevdrlAr~PnsvV--iSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 218 LFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ-----VSIEEVDRLARQPNSVV--ISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred EEecCCChHHHHHHHhccceEEEEEEEeeccce-----ecHHHHHHHhcCCCcEE--EEeccccCHHHHHHHHHHHh
Confidence 0112567777888884 57888999988877544 56666789998888888765
No 317
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.18 E-value=3.7e-10 Score=90.05 Aligned_cols=166 Identities=14% Similarity=0.207 Sum_probs=97.3
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC----------ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh--
Q 027382 10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD----------SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY-- 77 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-- 77 (224)
.+....++|+++|+.|+|||||+|.|++...... ..++..+......+.-++..+.+.++||||-.+.
T Consensus 18 ~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~id 97 (373)
T COG5019 18 SKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFID 97 (373)
T ss_pred HhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccc
Confidence 3457789999999999999999999998743322 1233334444444444677889999999991111
Q ss_pred ------------hhhhHhHh--------------cCCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCC
Q 027382 78 ------------RAVTSAYY--------------RGAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKC 130 (224)
Q Consensus 78 ------------~~~~~~~~--------------~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~ 130 (224)
......|+ .++++++|.+.++. +++..+. ..+..+.. .+-+|-|+.|+
T Consensus 98 Ns~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~----~vNlIPVI~Ka 172 (373)
T COG5019 98 NSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK----RVNLIPVIAKA 172 (373)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc----ccCeeeeeecc
Confidence 11122222 36788999998876 4444333 34444544 35578888999
Q ss_pred CCCCCCC--CCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhc
Q 027382 131 DLGSLRA--VPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISK 182 (224)
Q Consensus 131 D~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~~ 182 (224)
|.....+ ...+.+.+....+++++|. ..+.+..+.-.-.....+.+.++.
T Consensus 173 D~lT~~El~~~K~~I~~~i~~~nI~vf~--pyd~e~~~~e~~e~~~~l~~~~PF 224 (373)
T COG5019 173 DTLTDDELAEFKERIREDLEQYNIPVFD--PYDPEDDEDESLEENQDLRSLIPF 224 (373)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCceeC--CCCccccchhhHHHHHHHhhcCCe
Confidence 9743111 1122344455667888774 344444332222333344444433
No 318
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=7.4e-10 Score=90.17 Aligned_cols=157 Identities=14% Similarity=0.025 Sum_probs=109.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVD-SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
-|+..|+-..|||||++.+.+.....- ...-.|++...........+..+.++|.||++++-......+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 478899999999999999998654321 1222355555555556666678999999999999888888888999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR---ENLFFMETSALEATNVETAFLTV 172 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i 172 (224)
++++.-.....+. +..+.-.. ....++|++|+|..++.. ..+.+++.... .+++++.+|+++|.|++++-+.|
T Consensus 82 ~~deGl~~qtgEh-L~iLdllg--i~~giivltk~D~~d~~r-~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l 157 (447)
T COG3276 82 AADEGLMAQTGEH-LLILDLLG--IKNGIIVLTKADRVDEAR-IEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNEL 157 (447)
T ss_pred eCccCcchhhHHH-HHHHHhcC--CCceEEEEeccccccHHH-HHHHHHHHHhhcccccccccccccccCCCHHHHHHHH
Confidence 9976433333333 22222211 233599999999875321 12233333333 24578999999999999999998
Q ss_pred HHHHH
Q 027382 173 LTEIY 177 (224)
Q Consensus 173 ~~~i~ 177 (224)
.+...
T Consensus 158 ~~L~~ 162 (447)
T COG3276 158 IDLLE 162 (447)
T ss_pred HHhhh
Confidence 87763
No 319
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.14 E-value=7e-11 Score=92.84 Aligned_cols=54 Identities=17% Similarity=0.103 Sum_probs=39.4
Q ss_pred CcEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHH
Q 027382 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRE--NLFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 121 ~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
.+-++|+||+|+.+......+.+.+..+.. .++++++|+++|+|+++++++|..
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999643222344444444443 467999999999999999999876
No 320
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.06 E-value=5.2e-10 Score=87.60 Aligned_cols=157 Identities=14% Similarity=0.104 Sum_probs=102.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh---------hhhhhhhH
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ---------ERYRAVTS 82 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~~ 82 (224)
.+..--|.|+|-.++|||||+++|......+...-+.+.+.......+.. .-.+.+.||.|- ..|.+. -
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~AT-L 252 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQAT-L 252 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHHH-H
Confidence 44556789999999999999999997666555444333333334444422 235678899881 122222 2
Q ss_pred hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc----EEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEc
Q 027382 83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV----IMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETS 158 (224)
Q Consensus 83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (224)
.....+|+++-|.|++.|..-......+..+.+..-...| ++=|=||+|..+.... ..+++ -+.+|
T Consensus 253 eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--------~E~n~--~v~is 322 (410)
T KOG0410|consen 253 EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--------EEKNL--DVGIS 322 (410)
T ss_pred HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------cccCC--ccccc
Confidence 2346899999999999988777777777777665433333 4455677776432211 11222 57789
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q 027382 159 ALEATNVETAFLTVLTEIYRII 180 (224)
Q Consensus 159 ~~~~~~v~~~~~~i~~~i~~~~ 180 (224)
+++|+|.+++.+.+-..+....
T Consensus 323 altgdgl~el~~a~~~kv~~~t 344 (410)
T KOG0410|consen 323 ALTGDGLEELLKAEETKVASET 344 (410)
T ss_pred cccCccHHHHHHHHHHHhhhhh
Confidence 9999999999988877775554
No 321
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=3.6e-09 Score=79.67 Aligned_cols=186 Identities=16% Similarity=0.221 Sum_probs=103.5
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC---------ccCCcceeeEEEEEEECCeEEEEEEEeCCChh------
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD---------SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE------ 75 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------ 75 (224)
+.-..++|+|+|.+|.|||||+|.|+....... +..|..+......+.-++...++.++||||-.
T Consensus 42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ 121 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINND 121 (336)
T ss_pred hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCcc
Confidence 455789999999999999999999987543321 11222333333444446777889999999911
Q ss_pred ------------hhhh--------hhHhHhc--CCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCC
Q 027382 76 ------------RYRA--------VTSAYYR--GAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDL 132 (224)
Q Consensus 76 ------------~~~~--------~~~~~~~--~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~ 132 (224)
.+.+ .....+. .++.++|.+.++. +++..+. +.+..+-+ -+.++-|+.|.|.
T Consensus 122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDt 196 (336)
T KOG1547|consen 122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADT 196 (336)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeeccc
Confidence 1111 1111122 4567777777765 4443332 23333333 3447777889996
Q ss_pred CC--CCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhcccCCcCccccccCCccCCCCee
Q 027382 133 GS--LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTR 204 (224)
Q Consensus 133 ~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (224)
.. ++..-.+.+++-...+++.+|+--..+...=+..++ +.+.+.++..---+.++-...+.-...++++
T Consensus 197 lTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN---~kvR~~iPFAVVGsd~e~~vnG~~vlGRktr 267 (336)
T KOG1547|consen 197 LTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLN---DKVRESIPFAVVGSDKEIQVNGRRVLGRKTR 267 (336)
T ss_pred ccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHH---HHHHhhCCeEEecccceEEEcCeEeeccccc
Confidence 31 122222334444556788777765554433333333 3444555554444455555555555554443
No 322
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.05 E-value=1.5e-09 Score=90.32 Aligned_cols=115 Identities=19% Similarity=0.247 Sum_probs=79.6
Q ss_pred eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhh----------HHHHHHHHHHHHhcC-CCCCcEEEEEeCC
Q 027382 62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS----------FDHMARWLDELRGHA-DKNIVIMLIGNKC 130 (224)
Q Consensus 62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s----------~~~~~~~~~~~~~~~-~~~~p~ilv~nK~ 130 (224)
....+.++|.+|+...+.-|..++.++++||||+++++-+. +.+....+..+.+.. -.+.|++|+.||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 56678999999999999999999999999999999875222 333344444443332 2579999999999
Q ss_pred CCC------CC----------C--CCCHHHHHHHHHH------------cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 131 DLG------SL----------R--AVPTEDAQEFAQR------------ENLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 131 D~~------~~----------~--~~~~~~~~~~~~~------------~~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
|+- .. . .-..+.+..|... ..+.++.++|.+..++..+|+.+.+.|
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 961 10 0 1234555555443 112466888998899999998887654
No 323
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=4.7e-09 Score=84.33 Aligned_cols=162 Identities=14% Similarity=0.214 Sum_probs=94.0
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC---------ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh----
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD---------SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY---- 77 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---- 77 (224)
+....+.++++|+.|.|||||+|.|+....... ...+.........+.-++..+.++++||||-.+.
T Consensus 17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns 96 (366)
T KOG2655|consen 17 KKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNS 96 (366)
T ss_pred hcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccc
Confidence 344669999999999999999999998744322 1112233333333444677889999999991111
Q ss_pred ----------hhhhHhH-----------hc--CCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382 78 ----------RAVTSAY-----------YR--GAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLG 133 (224)
Q Consensus 78 ----------~~~~~~~-----------~~--~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~ 133 (224)
......| +. .+++++|.+.++. +++..+. ..+..+.. .+.+|-|+.|+|..
T Consensus 97 ~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~~----~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 97 NCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKLSK----KVNLIPVIAKADTL 171 (366)
T ss_pred ccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHHhc----cccccceeeccccC
Confidence 1111222 22 7788999998876 4333332 23333433 46688888999974
Q ss_pred CCCC--CCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382 134 SLRA--VPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRII 180 (224)
Q Consensus 134 ~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~ 180 (224)
...+ .-...+.+-+..+++++|....-.. +..+......+....
T Consensus 172 T~~El~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~~~ 217 (366)
T KOG2655|consen 172 TKDELNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKSSI 217 (366)
T ss_pred CHHHHHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhhcC
Confidence 3211 1112233445567777666554433 444444444554443
No 324
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.5e-09 Score=81.72 Aligned_cols=163 Identities=18% Similarity=0.204 Sum_probs=102.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh---hhhhHhHhcCCCEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY---RAVTSAYYRGAVGAM 92 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---~~~~~~~~~~~d~vi 92 (224)
-+|+++|...+||||+.+..+..-.+.. .-....+.....-.+....+.+.+||.||+-.+ ..-....++.+.++|
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPne-TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCc-eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 4599999999999999888775443222 111111111111123345678999999997654 223566789999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCCCC--CCCHHHHHHHHH---------HcCCeEEEEcC
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHA--DKNIVIMLIGNKCDLGSLR--AVPTEDAQEFAQ---------RENLFFMETSA 159 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~--~~~~~~~~~~~~---------~~~~~~~~~s~ 159 (224)
||+|+.+ +-.+.+.++...+.+.. ++++.+-+++.|.|...+. .....++.+..+ ...+.|+-+|.
T Consensus 107 fvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 107 FVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 9999987 45555555555555444 3678899999999974321 111111221111 12345777777
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh
Q 027382 160 LEATNVETAFLTVLTEIYRIIS 181 (224)
Q Consensus 160 ~~~~~v~~~~~~i~~~i~~~~~ 181 (224)
. .+.+-++|..+++.+..+.+
T Consensus 186 y-DHSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 186 Y-DHSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred c-chHHHHHHHHHHHHHhhhch
Confidence 6 56789999999988876643
No 325
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=8.1e-09 Score=82.94 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=58.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEE----------------CCeEEEEEEEeCCC-----
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI----------------DHKTVKAQIWDTAG----- 73 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~D~~G----- 73 (224)
.+++.++|.|+||||||.|++..........|+.+++-..-...+ ......+.++|++|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 368999999999999999999988755444444332222211111 12346788999998
Q ss_pred --hhhhhhhhHhHhcCCCEEEEEEeCC
Q 027382 74 --QERYRAVTSAYYRGAVGAMLVYDMT 98 (224)
Q Consensus 74 --~~~~~~~~~~~~~~~d~vi~v~d~~ 98 (224)
.+......-.-++.+|+++-|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 3344555666688999999999976
No 326
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.03 E-value=1.4e-09 Score=90.45 Aligned_cols=166 Identities=19% Similarity=0.329 Sum_probs=121.4
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382 10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAV 89 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 89 (224)
...=..+|+.|+|..++|||+|+++++.+.+.....+. +.. ....+.+++....+.+.|.+|.. ...|...+|
T Consensus 25 srsipelk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~-~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvd 97 (749)
T KOG0705|consen 25 SRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGR-FKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVD 97 (749)
T ss_pred ecccchhheeeeecccCCceeeeeeeccceeccccCCc-Ccc-ceeeEEeeccceEeeeecccCCc-----hhhhhhhcc
Confidence 34446789999999999999999999998875544443 333 33455567888899999999843 234566799
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCC--CCCCCHHHHHHHHH-HcCCeEEEEcCCCCCCH
Q 027382 90 GAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGS--LRAVPTEDAQEFAQ-RENLFFMETSALEATNV 165 (224)
Q Consensus 90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v 165 (224)
++||||.+.+..+++.+..+...+-... ...+|+++++++.-... .+.....+..+++. -..+.+|++++.+|.++
T Consensus 98 avIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv 177 (749)
T KOG0705|consen 98 AVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNV 177 (749)
T ss_pred ceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhH
Confidence 9999999999999998887765554333 35688888887754422 23333344444443 35578999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 027382 166 ETAFLTVLTEIYRIISK 182 (224)
Q Consensus 166 ~~~~~~i~~~i~~~~~~ 182 (224)
...|..+...+....++
T Consensus 178 ~rvf~~~~~k~i~~~~~ 194 (749)
T KOG0705|consen 178 ERVFQEVAQKIVQLRKY 194 (749)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999888777444
No 327
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.02 E-value=1.6e-10 Score=88.54 Aligned_cols=159 Identities=15% Similarity=0.098 Sum_probs=90.4
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCC-----------CCCccCCc---------------ceeeEEEEEEEC--
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEF-----------SVDSKATI---------------GVEFQTKTLSID-- 60 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~-----------~~~~~~~~---------------~~~~~~~~~~~~-- 60 (224)
.+...+.+.|.|.|+||+|||||+++|...-. .+++..+- ....+....--.
T Consensus 23 ~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~ 102 (266)
T PF03308_consen 23 YPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGS 102 (266)
T ss_dssp GGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SS
T ss_pred HhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCC
Confidence 34445678999999999999999999865211 11111010 011111111111
Q ss_pred ----------------CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEE
Q 027382 61 ----------------HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIM 124 (224)
Q Consensus 61 ----------------~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i 124 (224)
...+.+.+++|.|-- +.-.....-+|.+++|..+.-.+..+.++.-+..+. =+
T Consensus 103 lGGls~~t~~~v~ll~aaG~D~IiiETVGvG---QsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di 171 (266)
T PF03308_consen 103 LGGLSRATRDAVRLLDAAGFDVIIIETVGVG---QSEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DI 171 (266)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEEEEESSS---THHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SE
T ss_pred CCCccHhHHHHHHHHHHcCCCEEEEeCCCCC---ccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cE
Confidence 113678899998732 112335667999999999987777666555333333 38
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHH-------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382 125 LIGNKCDLGSLRAVPTEDAQEFAQR-------ENLFFMETSALEATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 125 lv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~ 179 (224)
+|+||.|.+.... ...+++..... +..+++.+||.++.|++++++.|.+.....
T Consensus 172 ~vVNKaD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 172 FVVNKADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp EEEE--SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEeCCChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 8999999643211 12233333322 124799999999999999999988755433
No 328
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.02 E-value=1.8e-09 Score=83.95 Aligned_cols=165 Identities=15% Similarity=0.104 Sum_probs=100.7
Q ss_pred CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCC-----------CCCccCCcceee----------------EEEEEE-
Q 027382 7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEF-----------SVDSKATIGVEF----------------QTKTLS- 58 (224)
Q Consensus 7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~-----------~~~~~~~~~~~~----------------~~~~~~- 58 (224)
.+.+...+...|.+.|.||+|||||+.+|...-. .+++..| |-.+ +.....
T Consensus 43 ~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~T-GGsiLGDRiRM~~~~~~~~vFiRs~~s 121 (323)
T COG1703 43 ALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFT-GGSILGDRIRMQRLAVDPGVFIRSSPS 121 (323)
T ss_pred HHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCC-CccccccHhhHHhhccCCCeEEeecCC
Confidence 3445566778999999999999999999865211 1111111 1111 000000
Q ss_pred -----------------ECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCC
Q 027382 59 -----------------IDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNI 121 (224)
Q Consensus 59 -----------------~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 121 (224)
++...+.+.+++|.|--.. -.....-+|.+++|.-+.-.+..+.++.-+..+..
T Consensus 122 rG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD------ 192 (323)
T COG1703 122 RGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD------ 192 (323)
T ss_pred CccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcc---hhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh------
Confidence 0122467889999884322 23345668999998877767777776664444442
Q ss_pred cEEEEEeCCCCCCCCCCCHHHHHHHHHH---------cCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhccc
Q 027382 122 VIMLIGNKCDLGSLRAVPTEDAQEFAQR---------ENLFFMETSALEATNVETAFLTVLTEIYRIISKKS 184 (224)
Q Consensus 122 p~ilv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~~~~ 184 (224)
++|+||.|..+.. ....++...... +..+++.+||.+|+|++++++.+.+...-......
T Consensus 193 --i~vINKaD~~~A~-~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg~ 261 (323)
T COG1703 193 --IIVINKADRKGAE-KAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESGL 261 (323)
T ss_pred --eeeEeccChhhHH-HHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhccc
Confidence 8899999964321 111111111111 22468999999999999999999887655544443
No 329
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.01 E-value=1.5e-09 Score=85.35 Aligned_cols=81 Identities=15% Similarity=0.125 Sum_probs=53.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCe---------------EEEEEEEeCCChh-------
Q 027382 18 VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK---------------TVKAQIWDTAGQE------- 75 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~------- 75 (224)
|+++|.|+||||||+|+|.+........+..+.......+.+... ...+.++|+||-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999998765444444333333333333222 2358999999922
Q ss_pred hhhhhhHhHhcCCCEEEEEEeCC
Q 027382 76 RYRAVTSAYYRGAVGAMLVYDMT 98 (224)
Q Consensus 76 ~~~~~~~~~~~~~d~vi~v~d~~ 98 (224)
.........++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 22223334467899999999874
No 330
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=7.1e-09 Score=81.83 Aligned_cols=147 Identities=18% Similarity=0.120 Sum_probs=106.3
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhc---C-CC------C----CCccCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027382 10 QKIDYVFKVVLIGDSAVGKSQLLARFAR---N-EF------S----VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~---~-~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 75 (224)
.....-+||.-+|+..-|||||--++.. . .. . .......|+++....+.++.....+--.|+||+.
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA 128 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence 3456778999999999999999776643 1 10 0 1122345888888888888888899999999999
Q ss_pred hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC---CCHHHHHHHHHHcCC
Q 027382 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA---VPTEDAQEFAQRENL 152 (224)
Q Consensus 76 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~~ 152 (224)
+|-.....-....|+.|+|+.++| ..+.+.++.+-..++.. -..+++++||.|+.++.+ .-..+++++..++++
T Consensus 129 DYIKNMItGaaqMDGaILVVaatD-G~MPQTrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATD-GPMPQTREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCC-CCCcchHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 998888888889999999999998 34444555544444443 244888999999974332 234467788888764
Q ss_pred -----eEEEEcC
Q 027382 153 -----FFMETSA 159 (224)
Q Consensus 153 -----~~~~~s~ 159 (224)
|++.-||
T Consensus 206 ~Gd~~PvI~GSA 217 (449)
T KOG0460|consen 206 DGDNTPVIRGSA 217 (449)
T ss_pred CCCCCCeeecch
Confidence 6776554
No 331
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.98 E-value=4.2e-09 Score=78.96 Aligned_cols=96 Identities=18% Similarity=0.078 Sum_probs=66.6
Q ss_pred hhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----H
Q 027382 74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFA-----Q 148 (224)
Q Consensus 74 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~ 148 (224)
.+.+...+..+++.+|++++|+|++++..- |...+... ..+.|+++|+||+|+.+.. ........+. .
T Consensus 21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~ 93 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAA 93 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHh
Confidence 334577888899999999999999875321 11111111 1358999999999996432 2344444444 2
Q ss_pred HcCC---eEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 149 RENL---FFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 149 ~~~~---~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
..+. .++.+||+++.|+++++..+.+.+
T Consensus 94 ~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 94 GLGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred hcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3333 589999999999999999988765
No 332
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.90 E-value=1.1e-08 Score=74.30 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=64.9
Q ss_pred hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 027382 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFME 156 (224)
Q Consensus 77 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (224)
++.+..+.++++|++++|+|++++..... ..+...+.. .+.|+++|+||+|+.+... ......+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE---LGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh---CCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence 45678888999999999999987543222 122222222 2589999999999853111 11222333445678999
Q ss_pred EcCCCCCCHHHHHHHHHHHHH
Q 027382 157 TSALEATNVETAFLTVLTEIY 177 (224)
Q Consensus 157 ~s~~~~~~v~~~~~~i~~~i~ 177 (224)
+|++++.|++++++.+.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999998887653
No 333
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.7e-09 Score=87.42 Aligned_cols=140 Identities=19% Similarity=0.225 Sum_probs=103.9
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc----------------cCCcceeeEEEEEEECCeEEEEEEEeC
Q 027382 8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS----------------KATIGVEFQTKTLSIDHKTVKAQIWDT 71 (224)
Q Consensus 8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~D~ 71 (224)
++......-+|.++.+..+||||.-.++++..-.... ....|+++....+.++++..++.++||
T Consensus 30 ~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidt 109 (753)
T KOG0464|consen 30 INPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDT 109 (753)
T ss_pred CCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecC
Confidence 3445556678999999999999999999873321111 112278888889999999999999999
Q ss_pred CChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC
Q 027382 72 AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN 151 (224)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~ 151 (224)
||+-.|+-....+++-.|+++.|||.+-.-..+.+..| ++....++|-.+++||+|...... ...+...-++.+
T Consensus 110 pghvdf~leverclrvldgavav~dasagve~qtltvw----rqadk~~ip~~~finkmdk~~anf--e~avdsi~ekl~ 183 (753)
T KOG0464|consen 110 PGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVW----RQADKFKIPAHCFINKMDKLAANF--ENAVDSIEEKLG 183 (753)
T ss_pred CCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeee----hhccccCCchhhhhhhhhhhhhhh--hhHHHHHHHHhC
Confidence 99999999999999999999999999976555555555 444445799999999999753221 223444455566
Q ss_pred Ce
Q 027382 152 LF 153 (224)
Q Consensus 152 ~~ 153 (224)
+.
T Consensus 184 ak 185 (753)
T KOG0464|consen 184 AK 185 (753)
T ss_pred Cc
Confidence 53
No 334
>PRK12289 GTPase RsgA; Reviewed
Probab=98.85 E-value=1.4e-08 Score=82.82 Aligned_cols=92 Identities=17% Similarity=0.127 Sum_probs=67.2
Q ss_pred hhhhHhHhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 027382 78 RAVTSAYYRGAVGAMLVYDMTKRQ-SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFME 156 (224)
Q Consensus 78 ~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (224)
..+.+..+.++|.+++|+|+.++. ....+.+|+..+.. .++|+++|+||+|+.+... .+...+.....+..++.
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~ 154 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLF 154 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEE
Confidence 344555689999999999999865 44456777765533 3689999999999953211 12223334567788999
Q ss_pred EcCCCCCCHHHHHHHHHH
Q 027382 157 TSALEATNVETAFLTVLT 174 (224)
Q Consensus 157 ~s~~~~~~v~~~~~~i~~ 174 (224)
+||+++.|+++++..+..
T Consensus 155 iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 155 ISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEcCCCCCHHHHhhhhcc
Confidence 999999999999988764
No 335
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.83 E-value=4.3e-08 Score=74.80 Aligned_cols=89 Identities=25% Similarity=0.207 Sum_probs=60.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhHhcCC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSAYYRGA 88 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~ 88 (224)
-+|.++|.|.+||||++..|.+.......... .+.....-....+.-.+++.|.||.-+ -........+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyef--ttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEF--TTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccc--eeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 38999999999999999999976544333222 233333323344566789999999321 233455567789
Q ss_pred CEEEEEEeCCChhhHHHH
Q 027382 89 VGAMLVYDMTKRQSFDHM 106 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~ 106 (224)
+.+++|.|+-.|-+...+
T Consensus 138 nli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred cEEEEEeeccCcccHHHH
Confidence 999999998876655444
No 336
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.82 E-value=2.2e-08 Score=79.82 Aligned_cols=88 Identities=13% Similarity=0.005 Sum_probs=67.9
Q ss_pred HhHhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCC
Q 027382 82 SAYYRGAVGAMLVYDMTKRQ-SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSAL 160 (224)
Q Consensus 82 ~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (224)
...+.++|.+++|+|+.++. ++..+.+|+..+... ++|+++|+||+|+.+.. .......+....+.+++.+|++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence 44588999999999999987 888888888776643 68999999999996431 1122233445567889999999
Q ss_pred CCCCHHHHHHHHHH
Q 027382 161 EATNVETAFLTVLT 174 (224)
Q Consensus 161 ~~~~v~~~~~~i~~ 174 (224)
++.|+++++..+..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999998887653
No 337
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.82 E-value=1.2e-08 Score=72.79 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=39.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 74 (224)
+++++|.+|+|||||+|++.+........ ..+.+.....+.++. .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999877643222 224455555555543 5799999994
No 338
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=4.6e-08 Score=78.19 Aligned_cols=119 Identities=20% Similarity=0.258 Sum_probs=79.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCc-ceeeEEEEEEEC------Ce-----------------------
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATI-GVEFQTKTLSID------HK----------------------- 62 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~------~~----------------------- 62 (224)
...--|+++|....||||||+.|+...++.-...+. ++++....+.-+ +.
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 345568999999999999999999988763222111 122222222111 00
Q ss_pred ----------EEEEEEEeCCCh---------h--hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCC
Q 027382 63 ----------TVKAQIWDTAGQ---------E--RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNI 121 (224)
Q Consensus 63 ----------~~~~~l~D~~G~---------~--~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 121 (224)
--.+.++||||. . .+.....++..++|.+|++||+..-+--++....+..++.+ .-
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---Ed 212 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---ED 212 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---cc
Confidence 124889999991 1 23556788899999999999998765555666666666654 34
Q ss_pred cEEEEEeCCCCCC
Q 027382 122 VIMLIGNKCDLGS 134 (224)
Q Consensus 122 p~ilv~nK~D~~~ 134 (224)
-+-+|.||.|..+
T Consensus 213 kiRVVLNKADqVd 225 (532)
T KOG1954|consen 213 KIRVVLNKADQVD 225 (532)
T ss_pred eeEEEeccccccC
Confidence 4778899999753
No 339
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.82 E-value=1.3e-08 Score=74.97 Aligned_cols=57 Identities=28% Similarity=0.386 Sum_probs=41.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 73 (224)
+..++++++|.||+|||||+|+|.+....... +..|++.....+.+. ..+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~---~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLD---KKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeC---CCEEEEECcC
Confidence 44589999999999999999999987653332 223566655555443 2588999998
No 340
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.81 E-value=1.7e-08 Score=73.37 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=39.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 73 (224)
..++|+++|.+|+|||||+|+|.+........ ..|.+.....+.... .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEEcCC---CEEEEECcC
Confidence 46789999999999999999999866533322 225555444444322 378999999
No 341
>PRK00098 GTPase RsgA; Reviewed
Probab=98.77 E-value=2.7e-08 Score=79.71 Aligned_cols=86 Identities=16% Similarity=0.104 Sum_probs=64.5
Q ss_pred HhcCCCEEEEEEeCCChhhHHH-HHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 027382 84 YYRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEA 162 (224)
Q Consensus 84 ~~~~~d~vi~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 162 (224)
...++|++++|+|+.+++.... +.+|+..+.. .++|+++|+||+|+.+... ...+..++.+..+.+++++|++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4689999999999988765444 4667766654 3689999999999953221 122344555667889999999999
Q ss_pred CCHHHHHHHHH
Q 027382 163 TNVETAFLTVL 173 (224)
Q Consensus 163 ~~v~~~~~~i~ 173 (224)
.|+++++..+.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 99999988764
No 342
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=3.4e-08 Score=85.16 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=89.8
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------ccCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027382 8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD--------------SKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73 (224)
Q Consensus 8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 73 (224)
.+++.+..-+++++-+...|||||...|+..+--.. ...+.|++...-.+..-..++.++++|+||
T Consensus 2 ~~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspg 81 (887)
T KOG0467|consen 2 LQKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPG 81 (887)
T ss_pred CCCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCC
Confidence 467788899999999999999999999977442111 112336666666666666889999999999
Q ss_pred hhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 027382 74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132 (224)
Q Consensus 74 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 132 (224)
|-+|.+.......-+|++++++|+...-.-+...-..+.+.+ +.-+++|+||+|.
T Consensus 82 hvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~----~~~~~lvinkidr 136 (887)
T KOG0467|consen 82 HVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE----GLKPILVINKIDR 136 (887)
T ss_pred ccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc----cCceEEEEehhhh
Confidence 999999999999999999999999874333322222222332 4557899999994
No 343
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.76 E-value=3e-08 Score=75.73 Aligned_cols=123 Identities=18% Similarity=0.203 Sum_probs=80.4
Q ss_pred ECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCCh-------hhHHHHHHHHHHHHhcC----CCCCcEEEEE
Q 027382 59 IDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR-------QSFDHMARWLDELRGHA----DKNIVIMLIG 127 (224)
Q Consensus 59 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~-------~s~~~~~~~~~~~~~~~----~~~~p~ilv~ 127 (224)
+.-..+.++.+|.+|+...+.-|..++.+.-++|||+..++. .+-..+++.+..++... -..+.+|+++
T Consensus 197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFL 276 (379)
T KOG0099|consen 197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFL 276 (379)
T ss_pred EeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEe
Confidence 334556799999999999999999999999999999988751 12223333333333222 2467899999
Q ss_pred eCCCCCCC----------------------------CCCCHH--HHHHHHH----H---------cCCeEEEEcCCCCCC
Q 027382 128 NKCDLGSL----------------------------RAVPTE--DAQEFAQ----R---------ENLFFMETSALEATN 164 (224)
Q Consensus 128 nK~D~~~~----------------------------~~~~~~--~~~~~~~----~---------~~~~~~~~s~~~~~~ 164 (224)
||.|+..+ ...+.. .++-|.+ + +-+.+..+.|.+-++
T Consensus 277 NKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTen 356 (379)
T KOG0099|consen 277 NKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTEN 356 (379)
T ss_pred cHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHH
Confidence 99997311 011111 1111111 1 123456788999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027382 165 VETAFLTVLTEIYRIIS 181 (224)
Q Consensus 165 v~~~~~~i~~~i~~~~~ 181 (224)
+..+|+...+.|.++..
T Consensus 357 IrrVFnDcrdiIqr~hl 373 (379)
T KOG0099|consen 357 IRRVFNDCRDIIQRMHL 373 (379)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998887766543
No 344
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=8.2e-08 Score=81.10 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=88.3
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc----------------cCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS----------------KATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 74 (224)
+.+..-+|.+.-+-.+||||+-++++....-... ....|++....-..+.+..+.+.++||||+
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGH 114 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGH 114 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCc
Confidence 4456678999999999999999998774321100 011266777666677788999999999999
Q ss_pred hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 027382 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132 (224)
Q Consensus 75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 132 (224)
-.|.-.....++-.|++++|++....-.-+...-|.+.-+ -++|.+.++||.|.
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r----y~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR----YNVPRICFINKMDR 168 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh----cCCCeEEEEehhhh
Confidence 9998888999999999999999887544444444533322 27999999999996
No 345
>PRK12288 GTPase RsgA; Reviewed
Probab=98.73 E-value=9.1e-08 Score=78.00 Aligned_cols=87 Identities=13% Similarity=0.063 Sum_probs=66.5
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382 85 YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV-PTEDAQEFAQRENLFFMETSALEAT 163 (224)
Q Consensus 85 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (224)
..++|.+++|++.....++..+.+|+..+.. .++|+++|+||+|+.+.... ...+..+.....+.+++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999888889999999876543 36899999999999642211 1122333445667899999999999
Q ss_pred CHHHHHHHHHH
Q 027382 164 NVETAFLTVLT 174 (224)
Q Consensus 164 ~v~~~~~~i~~ 174 (224)
|+++++..+..
T Consensus 195 GideL~~~L~~ 205 (347)
T PRK12288 195 GLEELEAALTG 205 (347)
T ss_pred CHHHHHHHHhh
Confidence 99999988764
No 346
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.72 E-value=8.8e-08 Score=78.74 Aligned_cols=95 Identities=17% Similarity=0.219 Sum_probs=68.5
Q ss_pred hhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHH----HHHH
Q 027382 74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQE----FAQR 149 (224)
Q Consensus 74 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~----~~~~ 149 (224)
.+.+..+...+.+.++++++|+|+.+.. ..|...+.+... +.|+++|+||+|+.. +....+++.+ ++++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence 5678888888899999999999997743 112223332222 578999999999965 3333444443 4566
Q ss_pred cCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 027382 150 ENL---FFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 150 ~~~---~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
.++ .++.+||+++.|++++|..+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 38999999999999999988653
No 347
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.68 E-value=4.6e-07 Score=74.09 Aligned_cols=153 Identities=16% Similarity=0.249 Sum_probs=92.4
Q ss_pred CcccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCC--------------CCccCCcceee----------EEEEEE
Q 027382 3 NLYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFS--------------VDSKATIGVEF----------QTKTLS 58 (224)
Q Consensus 3 ~~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~----------~~~~~~ 58 (224)
|.++++.++....|-|.|+|+..+||||||++|...-.- +-+....|.++ ....+.
T Consensus 5 ~iykDIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~ 84 (492)
T PF09547_consen 5 DIYKDIAERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEIT 84 (492)
T ss_pred hHHHHHHHhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEE
Confidence 567888899999999999999999999999999762110 00111112111 222334
Q ss_pred E-CCeEEEEEEEeCCCh-------------hhh-hhhh---------------HhHh--cCCCEEEEEEeCC--C--hhh
Q 027382 59 I-DHKTVKAQIWDTAGQ-------------ERY-RAVT---------------SAYY--RGAVGAMLVYDMT--K--RQS 102 (224)
Q Consensus 59 ~-~~~~~~~~l~D~~G~-------------~~~-~~~~---------------~~~~--~~~d~vi~v~d~~--~--~~s 102 (224)
+ ++..++++++|+.|- +++ ..-| +..+ +..=|+++.-|-+ + ++.
T Consensus 85 l~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~ 164 (492)
T PF09547_consen 85 LDDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPREN 164 (492)
T ss_pred ecCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHH
Confidence 4 467789999999880 000 0000 0001 1223455555543 2 455
Q ss_pred HHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCC
Q 027382 103 FDHMAR-WLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSAL 160 (224)
Q Consensus 103 ~~~~~~-~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (224)
+..+++ ....+++. +.|+++++|-.+... ....+...++..+++++++++++.
T Consensus 165 Y~eAEervI~ELk~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~ 218 (492)
T PF09547_consen 165 YVEAEERVIEELKEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCE 218 (492)
T ss_pred HHHHHHHHHHHHHHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehH
Confidence 555543 55556554 799999999988542 233455667777788887777654
No 348
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.67 E-value=3.9e-08 Score=73.88 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=82.8
Q ss_pred CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhh----------HHHHHHHHHHHHhcC-CCCCcEEEEEeC
Q 027382 61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS----------FDHMARWLDELRGHA-DKNIVIMLIGNK 129 (224)
Q Consensus 61 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s----------~~~~~~~~~~~~~~~-~~~~p~ilv~nK 129 (224)
-..+.+.+.|.+|+...+.-|.+++.+.-.++|++.++..+. +++..-++.-+.... -.+.++|+++||
T Consensus 196 l~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNK 275 (359)
T KOG0085|consen 196 LQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK 275 (359)
T ss_pred hhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEech
Confidence 345668899999999999999999999988998887765322 222222222222221 157889999999
Q ss_pred CCCCCC----------------CCCCHHHHHHHHHHc----C-----C-eEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 027382 130 CDLGSL----------------RAVPTEDAQEFAQRE----N-----L-FFMETSALEATNVETAFLTVLTEIYRIIS 181 (224)
Q Consensus 130 ~D~~~~----------------~~~~~~~~~~~~~~~----~-----~-~~~~~s~~~~~~v~~~~~~i~~~i~~~~~ 181 (224)
.|+.++ ...+.+.+++|..+. + + .-..+.|.+-+|+.-+|..+.+.+++...
T Consensus 276 kDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 276 KDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred hhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence 998542 233445566676552 1 1 23457788899999999999999887643
No 349
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.66 E-value=8.5e-08 Score=70.67 Aligned_cols=58 Identities=22% Similarity=0.280 Sum_probs=42.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 74 (224)
+..++++++|.+|+|||||+|++.+...... ....+.+.....+.+. ..+.++||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4557999999999999999999998776322 2222455555555443 45789999993
No 350
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1e-06 Score=75.64 Aligned_cols=144 Identities=14% Similarity=0.164 Sum_probs=84.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeE---------------------------------------
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQ--------------------------------------- 53 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--------------------------------------- 53 (224)
+...||++.|..++||||++|+++-...-+........-+-
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 45689999999999999999999875543332211100000
Q ss_pred ----EEEEEECCe-----EEEEEEEeCCChh---hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCC
Q 027382 54 ----TKTLSIDHK-----TVKAQIWDTAGQE---RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNI 121 (224)
Q Consensus 54 ----~~~~~~~~~-----~~~~~l~D~~G~~---~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 121 (224)
...+..+.. .=.+.++|.||-+ +..+....+...+|++|||.++.+..+..+ .+.+....+. +.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---KP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---CC
Confidence 000000010 0146789999943 456666777889999999999987544443 3333333322 34
Q ss_pred cEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--------eEEEEcCC
Q 027382 122 VIMLIGNKCDLGSLRAVPTEDAQEFAQRENL--------FFMETSAL 160 (224)
Q Consensus 122 p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~ 160 (224)
.+.|+.||+|.....+.-.+++.+...++.. .++.||++
T Consensus 263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 4777788899853333223444433333321 37888865
No 351
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.65 E-value=8.9e-08 Score=75.99 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=42.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 74 (224)
...++++++|.+|+|||||+|+|.+........ ..|.|.....+.+.. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEEeCC---CEEEEECCCc
Confidence 356899999999999999999999876433322 235566655555532 4789999995
No 352
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.65 E-value=4.5e-06 Score=59.57 Aligned_cols=147 Identities=15% Similarity=0.151 Sum_probs=79.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCC-C------------------
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTA-G------------------ 73 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-G------------------ 73 (224)
+..+||++.|+||||||||+.++...-....+.. .-+.+..+.-++..+-|.++|+. |
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv---gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKV---GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCcee---eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 4578999999999999999998875432222211 12333444445566666666665 3
Q ss_pred ---hh----hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHH
Q 027382 74 ---QE----RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF 146 (224)
Q Consensus 74 ---~~----~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 146 (224)
-+ .........+..||++| +|--.+-.+. .......+.+......|++.++.+.+.. --++++
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr~-------P~v~~i 149 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSRH-------PLVQRI 149 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccCC-------hHHHHh
Confidence 11 11122344455678444 4554433222 1223344444444578888888776642 123333
Q ss_pred HHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 147 AQRENLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 147 ~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
....++.++ .|.+|-+.+++.+++.+
T Consensus 150 k~~~~v~v~----lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 150 KKLGGVYVF----LTPENRNRILNEILSVL 175 (179)
T ss_pred hhcCCEEEE----EccchhhHHHHHHHHHh
Confidence 333333333 44556567777766544
No 353
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.65 E-value=1.2e-07 Score=75.60 Aligned_cols=58 Identities=24% Similarity=0.386 Sum_probs=43.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 74 (224)
+..++++++|.+|||||||+|+|.+....... +..|.|.....+.++. .+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 45789999999999999999999987653332 2335666655555533 4789999994
No 354
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.64 E-value=1.4e-07 Score=75.78 Aligned_cols=154 Identities=14% Similarity=0.144 Sum_probs=93.5
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCc--------------ceeeEEEEEEEC--------------
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATI--------------GVEFQTKTLSID-------------- 60 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~-------------- 60 (224)
.+..+.-+.|.++|+.+.|||||+-.|..+........+. ..+.....+-++
T Consensus 111 ~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a 190 (527)
T COG5258 111 TEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA 190 (527)
T ss_pred ccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHH
Confidence 3456678899999999999999999887765543322221 111111111111
Q ss_pred -------CeEEEEEEEeCCChhhhhhhh-Hh-HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 027382 61 -------HKTVKAQIWDTAGQERYRAVT-SA-YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD 131 (224)
Q Consensus 61 -------~~~~~~~l~D~~G~~~~~~~~-~~-~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 131 (224)
..+.-+.++|+.|++.|-... +. +-.+.|..++++.+++.-+.- .++.+....- ..+|++++++|+|
T Consensus 191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a---~~lPviVvvTK~D 266 (527)
T COG5258 191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALA---MELPVIVVVTKID 266 (527)
T ss_pred HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhh---hcCCEEEEEEecc
Confidence 123457899999999874433 32 335789999999998743332 2333332222 2699999999999
Q ss_pred CCCCCCC--CHHHHHHHHH----------------------Hc---CCeEEEEcCCCCCCHH
Q 027382 132 LGSLRAV--PTEDAQEFAQ----------------------RE---NLFFMETSALEATNVE 166 (224)
Q Consensus 132 ~~~~~~~--~~~~~~~~~~----------------------~~---~~~~~~~s~~~~~~v~ 166 (224)
+.+...+ ..+++....+ +. -.|++.+|+.+|+|.+
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld 328 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD 328 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH
Confidence 8542211 1122222221 11 1478999999999976
No 355
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=2.2e-08 Score=78.09 Aligned_cols=163 Identities=17% Similarity=0.102 Sum_probs=99.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCC---CCCccCCc--------------------------------ceeeEEEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEF---SVDSKATI--------------------------------GVEFQTKT 56 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~--------------------------------~~~~~~~~ 56 (224)
..-.++|.-+|+...||||+++++.+-.. ...-...+ ........
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 34679999999999999999999876211 00000000 00000000
Q ss_pred EEECC---eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382 57 LSIDH---KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133 (224)
Q Consensus 57 ~~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 133 (224)
..+.+ --..+.++|+||++..-+....-..-.|++++++..+++....+..+.+..+.-.. -..++++-||+|+.
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli 192 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLI 192 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhh
Confidence 00011 12457899999999776555555556788999888876333333333332222111 24589999999996
Q ss_pred CCCCC--CHHHHHHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 134 SLRAV--PTEDAQEFAQR---ENLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 134 ~~~~~--~~~~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
.+.+. ..+++..|.+. .++|++++||.-.-|++.+.+.|+..+
T Consensus 193 ~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 193 KESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred hHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 54432 23445666655 356899999999999998887777665
No 356
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.1e-06 Score=74.10 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=75.9
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA 88 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 88 (224)
.+..+.++=++|+|+||+||||||+.|..+-........ ....++ +.++...++++++|. ...+ .....+.+
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i----~GPiTv-vsgK~RRiTflEcp~--Dl~~-miDvaKIa 134 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEI----RGPITV-VSGKTRRITFLECPS--DLHQ-MIDVAKIA 134 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhcc----CCceEE-eecceeEEEEEeChH--HHHH-HHhHHHhh
Confidence 345667788899999999999999998764321111111 111121 467889999999993 2333 45567889
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCC
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGS 134 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~ 134 (224)
|++++++|.+-.-.++.++ +++.+..+. .| ++-|+++.|+-.
T Consensus 135 DLVlLlIdgnfGfEMETmE-FLnil~~HG---mPrvlgV~ThlDlfk 177 (1077)
T COG5192 135 DLVLLLIDGNFGFEMETME-FLNILISHG---MPRVLGVVTHLDLFK 177 (1077)
T ss_pred heeEEEeccccCceehHHH-HHHHHhhcC---CCceEEEEeeccccc
Confidence 9999999998654444333 445555443 44 678899999854
No 357
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.60 E-value=9.7e-08 Score=71.58 Aligned_cols=57 Identities=19% Similarity=0.362 Sum_probs=40.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCC-------CccCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSV-------DSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 73 (224)
...+++++|.+|+|||||+|+|.+..... ......|++.....+.+.. .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 34689999999999999999999854311 1122225666666665543 579999999
No 358
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.59 E-value=1.2e-07 Score=76.65 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=46.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 74 (224)
...++++|+|-|+||||||||+|.+.........+ |.|.....+.+... +.++||||-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P-G~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP-GTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC-ceecceEEEEcCCC---eEEecCCCc
Confidence 34588999999999999999999998874433333 78888887777554 889999993
No 359
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.58 E-value=2e-07 Score=67.56 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=40.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 73 (224)
....+++++|.+++|||||+|++.+... ..+.++.+.+.....+..+. .+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 3567899999999999999999997553 33344445554433333322 689999998
No 360
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.57 E-value=1.5e-07 Score=72.52 Aligned_cols=154 Identities=20% Similarity=0.219 Sum_probs=91.0
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc-cCCcceeeEEEEEEECCeEEEEEEEeCCC----------hhhhhhh
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS-KATIGVEFQTKTLSIDHKTVKAQIWDTAG----------QERYRAV 80 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~ 80 (224)
......+++.|.+++|||+|||.++........ .+..|.+...... ...-.+.++|.|| ...+..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f---~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF---HVGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee---eccceEEEEecCCcccccCCccCcchHhHh
Confidence 567789999999999999999999875543222 1132333333333 3344678899999 3344455
Q ss_pred hHhHhcCC---CEEEEEEeCCChh-hH-HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC----CCHHHHHH------
Q 027382 81 TSAYYRGA---VGAMLVYDMTKRQ-SF-DHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA----VPTEDAQE------ 145 (224)
Q Consensus 81 ~~~~~~~~---d~vi~v~d~~~~~-s~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----~~~~~~~~------ 145 (224)
...|+.+- --+++++|++.+- .. .....| +.+ .++|+.+|.||+|...... -....++.
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~---~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAW---LGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHH---Hhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 55554322 2355566666421 11 112223 233 2799999999999742110 00111222
Q ss_pred -HHHHcCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382 146 -FAQRENLFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 146 -~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
-+.....+|+-+|+.++.|++.++..+.+
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhh
Confidence 22223457889999999999988766543
No 361
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.56 E-value=2.8e-07 Score=66.89 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=57.0
Q ss_pred hHhcCCCEEEEEEeCCChhh--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCC
Q 027382 83 AYYRGAVGAMLVYDMTKRQS--FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSAL 160 (224)
Q Consensus 83 ~~~~~~d~vi~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (224)
..+..+|++++|+|+.++.. ...+.+++ ... ..+.|+++|+||+|+.+... ....+..+.+.+....+.+||+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~~-~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYL---KKE-KPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHH---Hhc-cCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeecc
Confidence 34678999999999998632 33333333 322 23589999999999953211 0111222222222335789999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027382 161 EATNVETAFLTVLTEI 176 (224)
Q Consensus 161 ~~~~v~~~~~~i~~~i 176 (224)
++.|++++++.+.+..
T Consensus 79 ~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 79 NPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999988886543
No 362
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.56 E-value=3.7e-07 Score=74.43 Aligned_cols=83 Identities=17% Similarity=0.041 Sum_probs=56.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCccCCcceeeEEEEEEECC---------------eEEEEEEEeCCChh----
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEF-SVDSKATIGVEFQTKTLSIDH---------------KTVKAQIWDTAGQE---- 75 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~D~~G~~---- 75 (224)
++++++|.|++|||||++.|.+... .....|+.+.......+.+.. ....+.+.|+||..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999876 443334322222222223322 12467899999932
Q ss_pred ---hhhhhhHhHhcCCCEEEEEEeCC
Q 027382 76 ---RYRAVTSAYYRGAVGAMLVYDMT 98 (224)
Q Consensus 76 ---~~~~~~~~~~~~~d~vi~v~d~~ 98 (224)
.........++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 23344556688999999999985
No 363
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.56 E-value=1e-06 Score=71.03 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=83.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc-------cC--------------CcceeeEEEEEE-------------E
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDS-------KA--------------TIGVEFQTKTLS-------------I 59 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~-------~~--------------~~~~~~~~~~~~-------------~ 59 (224)
..-.|+++|++|+||||++..|......... +. -.+..+...... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999988663211100 00 001111111000 0
Q ss_pred CCeEEEEEEEeCCChhhh--------hhhhHh---H-hcCCCEEEEEEeCCCh-hhHHHHHHHHHHHHhcCCCCCcEEEE
Q 027382 60 DHKTVKAQIWDTAGQERY--------RAVTSA---Y-YRGAVGAMLVYDMTKR-QSFDHMARWLDELRGHADKNIVIMLI 126 (224)
Q Consensus 60 ~~~~~~~~l~D~~G~~~~--------~~~~~~---~-~~~~d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv 126 (224)
....+.+.++||||.... ..+... . -...+..++|+|++.. +.+..+.. +.+.. -+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~----f~~~~---~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA----FHEAV---GLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH----HHhhC---CCCEEE
Confidence 123468999999995321 111111 1 1246789999999853 23333222 22211 234788
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 127 GNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 127 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
+||.|... ....+...+...++|+..++ +|++++++-..=-+.+
T Consensus 266 lTKlD~t~----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~~~~~~ 309 (318)
T PRK10416 266 LTKLDGTA----KGGVVFAIADELGIPIKFIG--VGEGIDDLQPFDAEEF 309 (318)
T ss_pred EECCCCCC----CccHHHHHHHHHCCCEEEEe--CCCChhhCccCCHHHH
Confidence 89999542 23456666677799988887 6888776644333333
No 364
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.53 E-value=3.2e-06 Score=64.99 Aligned_cols=87 Identities=20% Similarity=0.060 Sum_probs=54.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcC--CCCCCcc---CCcceeeEEEEEEECCeEEEEEEEeCCChhhh------hhh
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARN--EFSVDSK---ATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY------RAV 80 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~------~~~ 80 (224)
..+..-|.|+|++++|||+|+|.|++. .+..... .|.|+-....... .+....+.++||+|.... ...
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc-CCCcceEEEEecCCcCccccCchhhhh
Confidence 346778999999999999999999998 5543322 2223222222211 124578999999994432 112
Q ss_pred hHhHhc--CCCEEEEEEeCCC
Q 027382 81 TSAYYR--GAVGAMLVYDMTK 99 (224)
Q Consensus 81 ~~~~~~--~~d~vi~v~d~~~ 99 (224)
....+. -+|.+||..+...
T Consensus 83 ~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHHhCEEEEeccCcc
Confidence 223333 3888888877765
No 365
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.53 E-value=4.9e-07 Score=66.60 Aligned_cols=99 Identities=13% Similarity=0.019 Sum_probs=64.2
Q ss_pred CCChh-hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027382 71 TAGQE-RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR 149 (224)
Q Consensus 71 ~~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~ 149 (224)
.||+- ..-......+.++|.+++|+|++++..... ..++..+ .+.|+++|+||+|+.+... .....++.+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHh
Confidence 45543 334455677899999999999987543221 1122222 1478999999999853211 1122233334
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382 150 ENLFFMETSALEATNVETAFLTVLTEIY 177 (224)
Q Consensus 150 ~~~~~~~~s~~~~~~v~~~~~~i~~~i~ 177 (224)
....++.+|++++.|++++...+...+.
T Consensus 74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 74 KGEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 4456899999999999999988887653
No 366
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.51 E-value=6.7e-06 Score=69.22 Aligned_cols=136 Identities=18% Similarity=0.277 Sum_probs=87.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCc-------------------------------------------
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATI------------------------------------------- 48 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~------------------------------------------- 48 (224)
.++.-+|+|+|+..+||||.+..+......+-....+
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 3466789999999999999999886643221111000
Q ss_pred ---------ceeeEEEEE--EECCeE-EEEEEEeCCC-------------hhhhhhhhHhHhcCCCEEEEEEeCCChhhH
Q 027382 49 ---------GVEFQTKTL--SIDHKT-VKAQIWDTAG-------------QERYRAVTSAYYRGAVGAMLVYDMTKRQSF 103 (224)
Q Consensus 49 ---------~~~~~~~~~--~~~~~~-~~~~l~D~~G-------------~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~ 103 (224)
|.++....+ .+.+.. -+..++|.|| -+....+...++.+.+++|+|+--- |.
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SV 461 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SV 461 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---Cc
Confidence 333333222 233322 3578999999 3345667889999999999998432 22
Q ss_pred HHHHHHHHHHHh-cCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc
Q 027382 104 DHMARWLDELRG-HADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE 150 (224)
Q Consensus 104 ~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~ 150 (224)
+.-+.....+.. .-+.+...|+|++|.|+.+....++..++++..-.
T Consensus 462 DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGK 509 (980)
T KOG0447|consen 462 DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGK 509 (980)
T ss_pred chhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcC
Confidence 222222333332 22346778999999999887778888888887653
No 367
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.50 E-value=9e-07 Score=82.97 Aligned_cols=111 Identities=23% Similarity=0.276 Sum_probs=68.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCc----cC--CcceeeEEEEEEECCeEEEEEEEeCCC----hh----hhhhhhHh
Q 027382 18 VVLIGDSAVGKSQLLARFARNEFSVDS----KA--TIGVEFQTKTLSIDHKTVKAQIWDTAG----QE----RYRAVTSA 83 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~----~~~~~~~~ 83 (224)
-+|+|++|+||||+|.+- +..++... .. ..+.+.. ..-.+. -+-.++|++| ++ .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~---~~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFT---DEAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEec---CCEEEEcCCCccccCCCcccccHHHHHH
Confidence 489999999999999988 43443221 11 1111111 111122 2345899999 21 22334555
Q ss_pred Hh---------cCCCEEEEEEeCCCh-----hh----HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382 84 YY---------RGAVGAMLVYDMTKR-----QS----FDHMARWLDELRGHADKNIVIMLIGNKCDLG 133 (224)
Q Consensus 84 ~~---------~~~d~vi~v~d~~~~-----~s----~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 133 (224)
++ +..||||+++|+++- +. ...++..+..+.+..+..+||.+++||+|+.
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 54 358999999998752 11 1344455566666666789999999999985
No 368
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.49 E-value=3.8e-07 Score=66.06 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=39.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 73 (224)
....+++++|.+|+|||||+|.|.+..... ...+ +.+.....+.+. ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~--~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVP--GTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCC--CcccceEEEEec---CCEEEEECCC
Confidence 456889999999999999999999866422 2222 333333333332 3589999998
No 369
>PRK14974 cell division protein FtsY; Provisional
Probab=98.47 E-value=7.9e-07 Score=72.05 Aligned_cols=101 Identities=13% Similarity=-0.008 Sum_probs=58.8
Q ss_pred EEEEEEEeCCChhhhhh----hhHhH--hcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC
Q 027382 63 TVKAQIWDTAGQERYRA----VTSAY--YRGAVGAMLVYDMTKRQ-SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~----~~~~~--~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 135 (224)
.+.+.++||+|...... ....+ ....|.+++|+|+.... ....+ ..+.+.. -+--++.||.|...
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~---~~~giIlTKlD~~~- 293 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV---GIDGVILTKVDADA- 293 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC---CCCEEEEeeecCCC-
Confidence 35699999999543211 11111 12578899999997633 22222 2222211 22467789999753
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 136 RAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
..-.+-..+...+.|+..++ +|++++++...=-+.+
T Consensus 294 ---~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~~ 329 (336)
T PRK14974 294 ---KGGAALSIAYVIGKPILFLG--VGQGYDDLIPFDPDWF 329 (336)
T ss_pred ---CccHHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHH
Confidence 23345555566788887776 6888877654433333
No 370
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.47 E-value=7.8e-07 Score=70.51 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=64.0
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC---------------CeEEEEEEEeCCC-
Q 027382 10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID---------------HKTVKAQIWDTAG- 73 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~D~~G- 73 (224)
.+..+.+++.++|.|++|||||.|.|..........|+.+++-....+.+. .....+.++|++|
T Consensus 15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred cCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 345577899999999999999999999988776666654444433333331 2346789999998
Q ss_pred ------hhhhhhhhHhHhcCCCEEEEEEeCC
Q 027382 74 ------QERYRAVTSAYYRGAVGAMLVYDMT 98 (224)
Q Consensus 74 ------~~~~~~~~~~~~~~~d~vi~v~d~~ 98 (224)
.+......-.-++.+|+++-|+++.
T Consensus 95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 2334444556678999999998865
No 371
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=2.1e-06 Score=66.45 Aligned_cols=126 Identities=21% Similarity=0.368 Sum_probs=77.6
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCc--ceeeEEEEEEE--CCeEEEEEEEeCCCh-------hhh---
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATI--GVEFQTKTLSI--DHKTVKAQIWDTAGQ-------ERY--- 77 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~l~D~~G~-------~~~--- 77 (224)
.-..++|+.+|..|.|||||++.|++..+.....+.. +......++.+ .+..+.+.+.||.|- +.+
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i 118 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI 118 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence 4578999999999999999999999987754433221 23333333334 456678899999981 111
Q ss_pred ----hhhhHhHh---------------cCCCEEEEEEeCCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCCCCC
Q 027382 78 ----RAVTSAYY---------------RGAVGAMLVYDMTKRQSFDHMAR-WLDELRGHADKNIVIMLIGNKCDLGSLRA 137 (224)
Q Consensus 78 ----~~~~~~~~---------------~~~d~vi~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 137 (224)
.+....|+ ...++++|.+.++. +++..+.- .+..+.. .+.+|-++.|.|..
T Consensus 119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Lds----kVNIIPvIAKaDti---- 189 (406)
T KOG3859|consen 119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLDS----KVNIIPVIAKADTI---- 189 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHhh----hhhhHHHHHHhhhh----
Confidence 11122221 35678888888876 66655443 2233333 35567777888853
Q ss_pred CCHHHHHHHH
Q 027382 138 VPTEDAQEFA 147 (224)
Q Consensus 138 ~~~~~~~~~~ 147 (224)
+..++..|.
T Consensus 190 -sK~eL~~FK 198 (406)
T KOG3859|consen 190 -SKEELKRFK 198 (406)
T ss_pred -hHHHHHHHH
Confidence 345555443
No 372
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.45 E-value=1e-06 Score=63.86 Aligned_cols=85 Identities=13% Similarity=0.018 Sum_probs=54.2
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA 168 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 168 (224)
|++++|+|+.++.+... .++.. ......+.|+++|+||+|+.+...+ ...+..+.......++.+|++++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988655432 12221 1111236899999999998532110 11112232333456899999999999999
Q ss_pred HHHHHHHHH
Q 027382 169 FLTVLTEIY 177 (224)
Q Consensus 169 ~~~i~~~i~ 177 (224)
++.+.+...
T Consensus 77 ~~~i~~~~~ 85 (155)
T cd01849 77 ESAFTKQTN 85 (155)
T ss_pred HHHHHHHhH
Confidence 998876644
No 373
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.44 E-value=2.4e-06 Score=67.58 Aligned_cols=97 Identities=13% Similarity=0.066 Sum_probs=58.5
Q ss_pred eEEEEEEEeCCChhhhhhhhH-------hHh-----cCCCEEEEEEeCCCh-hhHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 027382 62 KTVKAQIWDTAGQERYRAVTS-------AYY-----RGAVGAMLVYDMTKR-QSFDHMARWLDELRGHADKNIVIMLIGN 128 (224)
Q Consensus 62 ~~~~~~l~D~~G~~~~~~~~~-------~~~-----~~~d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~n 128 (224)
..+.+.++||||......... ... ..+|.+++|+|++.. +.+..+ ..+.+.. -+.-+|.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~---~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV---GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC---CCCEEEEE
Confidence 347899999999543322211 111 237899999999752 233332 2222221 13577889
Q ss_pred CCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382 129 KCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT 171 (224)
Q Consensus 129 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 171 (224)
|.|... ....+.......++|+..++ +|++++++-..
T Consensus 226 KlDe~~----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~ 262 (272)
T TIGR00064 226 KLDGTA----KGGIILSIAYELKLPIKFIG--VGEKIDDLAPF 262 (272)
T ss_pred ccCCCC----CccHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence 999743 33455666667788887776 67777665433
No 374
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.42 E-value=6.1e-06 Score=68.82 Aligned_cols=135 Identities=14% Similarity=0.058 Sum_probs=71.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc------CCCC-CCccC--------------CcceeeEEEEEEEC-----------
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFAR------NEFS-VDSKA--------------TIGVEFQTKTLSID----------- 60 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~------~~~~-~~~~~--------------~~~~~~~~~~~~~~----------- 60 (224)
..+..|+++|.+||||||++..|.. .... ...++ -.+..+......-+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 3456799999999999999998863 1111 00000 01112111100000
Q ss_pred --CeEEEEEEEeCCChhhhhhh----hHhH--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 027382 61 --HKTVKAQIWDTAGQERYRAV----TSAY--YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132 (224)
Q Consensus 61 --~~~~~~~l~D~~G~~~~~~~----~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 132 (224)
...+.+.++||+|....... ...+ ....|.+++|+|++-..... .....+.+. --+--+|+||.|.
T Consensus 178 ~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~ 251 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDG 251 (429)
T ss_pred HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccC
Confidence 12578999999994433211 1111 22568899999987532222 222333322 1346788999997
Q ss_pred CCCCCCCHHHHHHHHHHcCCeEEEE
Q 027382 133 GSLRAVPTEDAQEFAQRENLFFMET 157 (224)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (224)
.. ..-.+.......+.|+..+
T Consensus 252 ~a----rgG~aLs~~~~t~~PI~fi 272 (429)
T TIGR01425 252 HA----KGGGALSAVAATKSPIIFI 272 (429)
T ss_pred CC----CccHHhhhHHHHCCCeEEE
Confidence 42 2233444555556554444
No 375
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.40 E-value=1.1e-06 Score=62.64 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=52.5
Q ss_pred hHhHhcCCCEEEEEEeCCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEc
Q 027382 81 TSAYYRGAVGAMLVYDMTKRQSFD--HMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETS 158 (224)
Q Consensus 81 ~~~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (224)
....+..+|++++|+|+.++.+.. .+.+++... . .+.|+++++||+|+.+.. ...+..++.+..+..++++|
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~--~~~~~~~~~~~~~~~ii~iS 78 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEE--QRKAWAEYFKKEGIVVVFFS 78 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHH--HHHHHHHHHHhcCCeEEEEE
Confidence 345578999999999998865533 344444322 1 368999999999985322 12334455666667899999
Q ss_pred CCCCC
Q 027382 159 ALEAT 163 (224)
Q Consensus 159 ~~~~~ 163 (224)
++++.
T Consensus 79 a~~~~ 83 (141)
T cd01857 79 ALKEN 83 (141)
T ss_pred ecCCC
Confidence 98775
No 376
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=5.1e-06 Score=63.38 Aligned_cols=163 Identities=20% Similarity=0.257 Sum_probs=97.9
Q ss_pred EEEEEcCCCC--CHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECC--eEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 17 KVVLIGDSAV--GKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH--KTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 17 ~i~v~G~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
-++|+|..|+ ||.+|+.+|....+.........+.+...++.-.+ .++.+.+.-.. +++.--.........+++
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic--de~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC--DEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc--chhccCCcccccceeeEE
Confidence 4689999999 99999999988776544433333344433332222 22333333222 112111222233456799
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC---------------------------C---------
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL---------------------------R--------- 136 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---------------------------~--------- 136 (224)
+|||.+...++..+..|+..-.- .. --..+.++||.|.... .
T Consensus 84 mvfdlse~s~l~alqdwl~htdi-ns-fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss 161 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTDI-NS-FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS 161 (418)
T ss_pred EEEeccchhhhHHHHhhcccccc-cc-chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence 99999999999999999753211 11 1225677899986310 0
Q ss_pred -----C---CCHHHHHHHHHHcCCeEEEEcCCCC------------CCHHHHHHHHHHHHHHHHhcc
Q 027382 137 -----A---VPTEDAQEFAQRENLFFMETSALEA------------TNVETAFLTVLTEIYRIISKK 183 (224)
Q Consensus 137 -----~---~~~~~~~~~~~~~~~~~~~~s~~~~------------~~v~~~~~~i~~~i~~~~~~~ 183 (224)
. .......+|+.++++.|++.++.+. .|+..+|..+-..+..-+--+
T Consensus 162 llgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmilk 228 (418)
T KOG4273|consen 162 LLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMILK 228 (418)
T ss_pred ccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccceec
Confidence 0 1112356889999999999988532 578888888776665444333
No 377
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=1.7e-06 Score=69.54 Aligned_cols=149 Identities=21% Similarity=0.273 Sum_probs=91.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccC----------------Cc-------ceeeEEEEEEE----------C
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKA----------------TI-------GVEFQTKTLSI----------D 60 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~-------~~~~~~~~~~~----------~ 60 (224)
..++++|+|.-.+|||||+-.|..+........ |. |.+.....+.+ +
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 578999999999999999998877554322111 10 11111111111 1
Q ss_pred CeEEEEEEEeCCChhhhhhhhHhHhc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC--
Q 027382 61 HKTVKAQIWDTAGQERYRAVTSAYYR--GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR-- 136 (224)
Q Consensus 61 ~~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-- 136 (224)
.....+.++|.+|+..|.......+. -.|..++|+++...-.+. .++.+..+... ++|++++++|+|+.+..
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL---NIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh---CCCeEEEEEeeccccchhH
Confidence 12245889999999888665544443 347788999887654444 34444444433 79999999999996531
Q ss_pred ----------------------CCCHHHHHHHHHH----cCCeEEEEcCCCCCCHH
Q 027382 137 ----------------------AVPTEDAQEFAQR----ENLFFMETSALEATNVE 166 (224)
Q Consensus 137 ----------------------~~~~~~~~~~~~~----~~~~~~~~s~~~~~~v~ 166 (224)
..+..++-..+++ +-.|++-+|..+|+|++
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ 377 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLR 377 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchh
Confidence 1112222222222 22478899999999865
No 378
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.35 E-value=4.8e-07 Score=65.32 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=33.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCcc---C-Ccc--eeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSK---A-TIG--VEFQTKTLSIDHKTVKAQIWDTAGQERY 77 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~---~-~~~--~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 77 (224)
-.++++|++|||||||+|.|.+........ . ..| ++.....+.+.. ...++||||-..+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECCCCCcc
Confidence 357999999999999999999874322110 0 111 222223333322 2478999995444
No 379
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.33 E-value=4.8e-06 Score=60.53 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027382 18 VVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (224)
++++|..|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999999875
No 380
>PRK12288 GTPase RsgA; Reviewed
Probab=98.33 E-value=1.1e-06 Score=71.80 Aligned_cols=58 Identities=19% Similarity=0.378 Sum_probs=36.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC-ccCC---cc--eeeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027382 18 VVLIGDSAVGKSQLLARFARNEFSVD-SKAT---IG--VEFQTKTLSIDHKTVKAQIWDTAGQERYR 78 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~---~~--~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 78 (224)
++++|.+|||||||||+|++...... ..+. .| +|.....+.+.+. ..++||||-..+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 78999999999999999998654321 1111 11 2333333444332 2489999965443
No 381
>PRK12289 GTPase RsgA; Reviewed
Probab=98.33 E-value=1.1e-06 Score=71.83 Aligned_cols=55 Identities=25% Similarity=0.305 Sum_probs=34.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCccCC----cc--eeeEEEEEEECCeEEEEEEEeCCChh
Q 027382 18 VVLIGDSAVGKSQLLARFARNEFSVDSKAT----IG--VEFQTKTLSIDHKTVKAQIWDTAGQE 75 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~l~D~~G~~ 75 (224)
++|+|++|||||||||+|++.......... .| +|.....+.+.... .++||||-.
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~ 235 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFN 235 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcc
Confidence 799999999999999999976533221111 01 23333344443322 689999954
No 382
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.31 E-value=5.4e-06 Score=65.84 Aligned_cols=101 Identities=13% Similarity=0.043 Sum_probs=65.7
Q ss_pred CCChh-hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027382 71 TAGQE-RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR 149 (224)
Q Consensus 71 ~~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~ 149 (224)
.|||- .........+..+|++++|+|+.++.+... ......+ .+.|+++|+||+|+.+... .....++.+.
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHH
Confidence 46654 223456677889999999999987644322 1111222 1578999999999853211 1122222333
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382 150 ENLFFMETSALEATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 150 ~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~ 179 (224)
.+.+++.+|++++.|+.++.+.+.+.+.+.
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 456789999999999999988887766443
No 383
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.29 E-value=4.7e-06 Score=66.55 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=66.3
Q ss_pred CCChhh-hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027382 71 TAGQER-YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR 149 (224)
Q Consensus 71 ~~G~~~-~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~ 149 (224)
.|||-. ........+..+|++++|+|+.++.+... .++..+.. +.|+++|+||+|+.+... .+...++..+
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~----~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG----NKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC----CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 577542 23345667889999999999987644322 11111221 578999999999853210 1122233334
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382 150 ENLFFMETSALEATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 150 ~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~ 179 (224)
.+.+++.+|++++.|++++.+.+...+.+.
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 456789999999999999998887766543
No 384
>PRK13796 GTPase YqeH; Provisional
Probab=98.27 E-value=8.7e-06 Score=67.16 Aligned_cols=93 Identities=17% Similarity=0.268 Sum_probs=60.5
Q ss_pred hhhhhhhHhHhcCCC-EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHH----HHH
Q 027382 75 ERYRAVTSAYYRGAV-GAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF----AQR 149 (224)
Q Consensus 75 ~~~~~~~~~~~~~~d-~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~----~~~ 149 (224)
+.+....... ...| .+++|+|+.+.. ..|...+.+... +.|+++|+||+|+.+ .....+.+.++ ++.
T Consensus 57 ~~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 57 DDFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKE 128 (365)
T ss_pred HHHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHh
Confidence 3455444443 4444 899999998733 112233333222 578999999999964 33334444444 555
Q ss_pred cCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 027382 150 ENL---FFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 150 ~~~---~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
.++ .++.+||+++.|++++++.+.+.
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 665 58999999999999999998654
No 385
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.22 E-value=3.1e-06 Score=66.00 Aligned_cols=55 Identities=22% Similarity=0.202 Sum_probs=34.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCc-cC-----CcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDS-KA-----TIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 75 (224)
.++++|.+|||||||+|+|.+....... .+ ...+|.....+.+.+ ..++||||-.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~ 182 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFN 182 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcc
Confidence 5789999999999999999986432211 11 111333333344422 2799999954
No 386
>PRK13796 GTPase YqeH; Provisional
Probab=98.22 E-value=2.8e-06 Score=70.05 Aligned_cols=56 Identities=23% Similarity=0.407 Sum_probs=38.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC----CCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEF----SVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 74 (224)
.+++++|.+|||||||+|+|+.... .....+..|+|.....+.++.. ..++||||-
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence 4799999999999999999986431 1111222355666555555332 379999995
No 387
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.19 E-value=4.3e-06 Score=68.84 Aligned_cols=57 Identities=21% Similarity=0.401 Sum_probs=38.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC----CCccCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFS----VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 75 (224)
.+++++|.+|||||||+|+|++.... .......|+|.....+.+.. .+.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence 58999999999999999999985421 11112224555554444422 25799999943
No 388
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.19 E-value=3e-06 Score=70.60 Aligned_cols=61 Identities=21% Similarity=0.221 Sum_probs=45.8
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 75 (224)
.....+.|++||-|+|||||+||.|.+...-..+ .|.|.|..-.++.+.. .+.+.|+||.-
T Consensus 310 ~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 310 RYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred CCCceeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 3445899999999999999999999998764333 3446666666665533 57889999943
No 389
>PRK01889 GTPase RsgA; Reviewed
Probab=98.16 E-value=9.5e-06 Score=66.68 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=59.1
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEcCCCCC
Q 027382 85 YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-RENLFFMETSALEAT 163 (224)
Q Consensus 85 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~ 163 (224)
..++|.+++|+++..+-....+.+++..+... +++.++|+||+|+.+.. .+..+.+.. ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence 57899999999997544555667777666554 57789999999996421 112222222 345688999999999
Q ss_pred CHHHHHHHHH
Q 027382 164 NVETAFLTVL 173 (224)
Q Consensus 164 ~v~~~~~~i~ 173 (224)
|++++...+.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9998887763
No 390
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.15 E-value=2.3e-05 Score=57.74 Aligned_cols=84 Identities=15% Similarity=0.016 Sum_probs=46.9
Q ss_pred EEEEEEEeCCChhhh----hhhhHhHh--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382 63 TVKAQIWDTAGQERY----RAVTSAYY--RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~----~~~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 136 (224)
...+.++|++|.... -.....+. ...|.+++|+|+..... ..++...+.+..+ ..-+|.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~-- 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDA-- 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCC--
Confidence 456888999996322 11111112 24899999999865332 2233333333222 2566779999753
Q ss_pred CCCHHHHHHHHHHcCCeEEE
Q 027382 137 AVPTEDAQEFAQRENLFFME 156 (224)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~ 156 (224)
....+...+...++|+..
T Consensus 154 --~~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 154 --RGGAALSIRAVTGKPIKF 171 (173)
T ss_pred --CcchhhhhHHHHCcCeEe
Confidence 223344477777776543
No 391
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.15 E-value=1.6e-05 Score=64.21 Aligned_cols=116 Identities=17% Similarity=0.228 Sum_probs=67.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCC------------------ccCCccee--------------------eEEE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVD------------------SKATIGVE--------------------FQTK 55 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~--------------------~~~~ 55 (224)
..++|+|+|...+|||||+-.|........ ...++|.+ ....
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 568999999999999999876654332211 11111111 1111
Q ss_pred EEEECCeEEEEEEEeCCChhhhhhhhHhHh--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382 56 TLSIDHKTVKAQIWDTAGQERYRAVTSAYY--RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133 (224)
Q Consensus 56 ~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 133 (224)
.+ ++....-+.++|..|++.|-...-.-+ .-.|..++++-++- .-+...++.+..... -.+|+++|++|+|..
T Consensus 212 kI-ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNa-GIiGmTKEHLgLALa---L~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 212 KI-CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANA-GIIGMTKEHLGLALA---LHVPVFVVVTKIDMC 286 (641)
T ss_pred ee-ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccc-cceeccHHhhhhhhh---hcCcEEEEEEeeccC
Confidence 11 122334578999999998855433222 34576777776543 222222333322222 269999999999985
Q ss_pred C
Q 027382 134 S 134 (224)
Q Consensus 134 ~ 134 (224)
.
T Consensus 287 P 287 (641)
T KOG0463|consen 287 P 287 (641)
T ss_pred c
Confidence 4
No 392
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.10 E-value=2.6e-05 Score=64.02 Aligned_cols=140 Identities=16% Similarity=0.130 Sum_probs=74.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCC-C--ccCCc--------------------ceeeEEEEEE-------ECCeEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSV-D--SKATI--------------------GVEFQTKTLS-------IDHKTV 64 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~-~--~~~~~--------------------~~~~~~~~~~-------~~~~~~ 64 (224)
.-.++++|++|+||||++.+|....... . ....+ +..+...... -.....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3467899999999999999997632110 0 00000 1111110000 012345
Q ss_pred EEEEEeCCChhhhhhh----hHhH--hcCCCEEEEEEeCCC-hhhHHHHHHHHHHHHhcCCCC--CcEEEEEeCCCCCCC
Q 027382 65 KAQIWDTAGQERYRAV----TSAY--YRGAVGAMLVYDMTK-RQSFDHMARWLDELRGHADKN--IVIMLIGNKCDLGSL 135 (224)
Q Consensus 65 ~~~l~D~~G~~~~~~~----~~~~--~~~~d~vi~v~d~~~-~~s~~~~~~~~~~~~~~~~~~--~p~ilv~nK~D~~~~ 135 (224)
.+.++||+|....... .... .....-.++|++++. .+.+..+...+.......... -+--+|.||.|..
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt-- 294 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA-- 294 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC--
Confidence 7899999995432221 1111 122345688999876 444444433333332111000 1235677999964
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEc
Q 027382 136 RAVPTEDAQEFAQRENLFFMETS 158 (224)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~s 158 (224)
...-.+-.+....++|+..++
T Consensus 295 --~~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 295 --SNLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred --CCccHHHHHHHHHCcCeEEEe
Confidence 345667788888888866664
No 393
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=9.2e-06 Score=67.77 Aligned_cols=139 Identities=17% Similarity=0.208 Sum_probs=92.5
Q ss_pred cCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc--------------CCcceeeEEEEEEE------------
Q 027382 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK--------------ATIGVEFQTKTLSI------------ 59 (224)
Q Consensus 6 ~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~------------ 59 (224)
+.++.+..+.-++-|+-+...|||||-..|....-..... ...++++....+.+
T Consensus 10 r~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~ 89 (842)
T KOG0469|consen 10 RELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFI 89 (842)
T ss_pred HHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHh
Confidence 4567778888899999999999999999987643211100 01134443333322
Q ss_pred ----CCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC-C
Q 027382 60 ----DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG-S 134 (224)
Q Consensus 60 ----~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~ 134 (224)
++..+.++++|.||+-.|.+.....++-.|+.+.|+|..+.-..+.-..+.+.+.+ .+.-++++||.|.. -
T Consensus 90 k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlL 165 (842)
T KOG0469|consen 90 KQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALL 165 (842)
T ss_pred cCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHH
Confidence 24568899999999999999999999999999999999875444433333333333 34457788999963 1
Q ss_pred CCCCCHHHHHHHHH
Q 027382 135 LRAVPTEDAQEFAQ 148 (224)
Q Consensus 135 ~~~~~~~~~~~~~~ 148 (224)
+-+.+.+++-+..+
T Consensus 166 ELq~~~EeLyqtf~ 179 (842)
T KOG0469|consen 166 ELQLSQEELYQTFQ 179 (842)
T ss_pred hhcCCHHHHHHHHH
Confidence 13455555544333
No 394
>PRK13695 putative NTPase; Provisional
Probab=98.08 E-value=0.00012 Score=53.95 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=44.2
Q ss_pred HhHhcCCCEEEEEEeC---CChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEc
Q 027382 82 SAYYRGAVGAMLVYDM---TKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETS 158 (224)
Q Consensus 82 ~~~~~~~d~vi~v~d~---~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (224)
...+..++. +++|- .+..+ ....+.+..+. ..+.|++++.+|... .....++....+..+++++
T Consensus 91 ~~~l~~~~~--lllDE~~~~e~~~-~~~~~~l~~~~---~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~~ 157 (174)
T PRK13695 91 ERALEEADV--IIIDEIGKMELKS-PKFVKAVEEVL---DSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYELT 157 (174)
T ss_pred HhccCCCCE--EEEECCCcchhhh-HHHHHHHHHHH---hCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEEc
Confidence 334556775 57773 32222 12222332232 336889999987432 2345566666677777774
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 027382 159 ALEATNVETAFLTVLTEI 176 (224)
Q Consensus 159 ~~~~~~v~~~~~~i~~~i 176 (224)
.+|-+++.+.+++.+
T Consensus 158 ---~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 158 ---PENRDSLPFEILNRL 172 (174)
T ss_pred ---chhhhhHHHHHHHHH
Confidence 456667777776644
No 395
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=7.2e-05 Score=63.81 Aligned_cols=137 Identities=18% Similarity=0.177 Sum_probs=74.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCC------CCccCC-----------------cceeeEEEEEE------E-CCeEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFS------VDSKAT-----------------IGVEFQTKTLS------I-DHKTV 64 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~------~~~~~~-----------------~~~~~~~~~~~------~-~~~~~ 64 (224)
.-.|+|+|+.|+||||++..|...-.. .....+ .+..+...... + ....+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 456889999999999999888652110 000000 01111110000 0 01347
Q ss_pred EEEEEeCCChhhhhhh-------hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC
Q 027382 65 KAQIWDTAGQERYRAV-------TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA 137 (224)
Q Consensus 65 ~~~l~D~~G~~~~~~~-------~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 137 (224)
.+.|+||+|....... .... . ....++|++.+. +...+...+..+... .+.-+|+||.|..
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa-~-~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt---- 497 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAA-R-QVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDET---- 497 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHh-h-cCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCc----
Confidence 8999999994322111 1111 1 234567777763 233333444444332 3567889999964
Q ss_pred CCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382 138 VPTEDAQEFAQRENLFFMETSALEATNV 165 (224)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v 165 (224)
.....+.......+.++..++. |..|
T Consensus 498 ~~lG~aLsv~~~~~LPI~yvt~--GQ~V 523 (559)
T PRK12727 498 GRFGSALSVVVDHQMPITWVTD--GQRV 523 (559)
T ss_pred cchhHHHHHHHHhCCCEEEEeC--CCCc
Confidence 3456777777888888766643 5555
No 396
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.06 E-value=8e-06 Score=64.46 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=35.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC------CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSV------DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY 77 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 77 (224)
-.+++|++|||||||+|+|....... ......-+|.....+.+.+. -.++||||-..+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCcc
Confidence 35899999999999999998743221 11111113334444444322 257999995443
No 397
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.06 E-value=2.5e-05 Score=58.72 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=73.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCcc---------------------CCcceeeEEEEEE-------------ECC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSK---------------------ATIGVEFQTKTLS-------------IDH 61 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~-------------~~~ 61 (224)
-.|+++|++||||||.+-+|.......... ...+..+...... ...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 358999999999999998876532111000 0002222111000 001
Q ss_pred eEEEEEEEeCCChhhhhh----hhHhHh--cCCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 62 KTVKAQIWDTAGQERYRA----VTSAYY--RGAVGAMLVYDMTKRQ-SFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 62 ~~~~~~l~D~~G~~~~~~----~~~~~~--~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
..+.+.++||+|...... .+..++ ...+-+++|.+++... ....+...+..+ + +--++.||.|..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~----~---~~~lIlTKlDet- 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF----G---IDGLILTKLDET- 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS----S---TCEEEEESTTSS-
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc----c---CceEEEEeecCC-
Confidence 225699999999332211 111111 1567899999998633 333333322211 1 124568999964
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382 135 LRAVPTEDAQEFAQRENLFFMETSALEATNV 165 (224)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 165 (224)
.....+-.++.+.+.|+-.++. |.++
T Consensus 154 ---~~~G~~l~~~~~~~~Pi~~it~--Gq~V 179 (196)
T PF00448_consen 154 ---ARLGALLSLAYESGLPISYITT--GQRV 179 (196)
T ss_dssp ---STTHHHHHHHHHHTSEEEEEES--SSST
T ss_pred ---CCcccceeHHHHhCCCeEEEEC--CCCh
Confidence 3455677888888888766653 4444
No 398
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=7e-05 Score=62.51 Aligned_cols=152 Identities=18% Similarity=0.161 Sum_probs=81.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-----CC-CccC--C---------------cceeeEEEEEE-------ECCeEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEF-----SV-DSKA--T---------------IGVEFQTKTLS-------IDHKTV 64 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~-----~~-~~~~--~---------------~~~~~~~~~~~-------~~~~~~ 64 (224)
.-.|+++|+.|+||||++..|.+... .. .... + .+.......-. ......
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 45799999999999999998875311 00 0000 0 01111100000 012235
Q ss_pred EEEEEeCCChhhh----hhhhHhHh--cCCCEEEEEEeCCC-hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC
Q 027382 65 KAQIWDTAGQERY----RAVTSAYY--RGAVGAMLVYDMTK-RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA 137 (224)
Q Consensus 65 ~~~l~D~~G~~~~----~~~~~~~~--~~~d~vi~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 137 (224)
.+.++||+|.... ......+. ....-.++|+|++. ...+. +++..+... -+--++.||.|..
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~---~~~~~f~~~----~~~~~I~TKlDEt---- 339 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD---EVISAYQGH----GIHGCIITKVDEA---- 339 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH---HHHHHhcCC----CCCEEEEEeeeCC----
Confidence 6889999993321 12222221 12345788889884 33333 333333321 2235678999964
Q ss_pred CCHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHHHHHHHHHHHH
Q 027382 138 VPTEDAQEFAQRENLFFMETSALEATNV-ETAFLTVLTEIYRI 179 (224)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v-~~~~~~i~~~i~~~ 179 (224)
...-.+-.++...++|+..++ +|.+| +++...=.+.+.+.
T Consensus 340 ~~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~a~~~~lv~~ 380 (420)
T PRK14721 340 ASLGIALDAVIRRKLVLHYVT--NGQKVPEDLHEANSRYLLHR 380 (420)
T ss_pred CCccHHHHHHHHhCCCEEEEE--CCCCchhhhhhCCHHHHHHH
Confidence 345667888888888877664 46666 44443333333333
No 399
>PRK00098 GTPase RsgA; Reviewed
Probab=98.04 E-value=1.1e-05 Score=64.79 Aligned_cols=56 Identities=27% Similarity=0.298 Sum_probs=34.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCC----cc--eeeEEEEEEECCeEEEEEEEeCCChh
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKAT----IG--VEFQTKTLSIDHKTVKAQIWDTAGQE 75 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~l~D~~G~~ 75 (224)
.++++|++|+|||||+|.|++.......... .| ++.....+.+... ..++||||-.
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~ 227 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFS 227 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcC
Confidence 5889999999999999999986543221111 11 2222233333322 3789999954
No 400
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=3.7e-05 Score=71.05 Aligned_cols=114 Identities=25% Similarity=0.308 Sum_probs=65.3
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceee-EEEEEEECCeEEEEEEEeCCC----h----hhhhhhhHhHh---
Q 027382 19 VLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEF-QTKTLSIDHKTVKAQIWDTAG----Q----ERYRAVTSAYY--- 85 (224)
Q Consensus 19 ~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G----~----~~~~~~~~~~~--- 85 (224)
+|+|++|+||||++..--- .++ .......+... .+..++. +-.-.-.++||.| + +.....|..++
T Consensus 129 ~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~gT~~cdw-wf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 129 MVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPGTRNCDW-WFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred EEecCCCCCcchHHhcccc-cCcchhhhccccccCCCCcccCc-ccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 7899999999999876432 121 11100001100 0111111 1223457889988 2 13344565553
Q ss_pred ------cCCCEEEEEEeCCChhh---------HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 86 ------RGAVGAMLVYDMTKRQS---------FDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 86 ------~~~d~vi~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
+..||||+.+|+++--+ ...++.-+..+.+......|+++++||.|+..
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 47799999999875111 11223334555555557899999999999853
No 401
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.02 E-value=0.00019 Score=60.38 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=54.6
Q ss_pred EEEEEEEeCCChhhhh----hhhHhHhc---CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC
Q 027382 63 TVKAQIWDTAGQERYR----AVTSAYYR---GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL 135 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~----~~~~~~~~---~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 135 (224)
.+.+.++||+|..... .....++. ...-+++|++++- ....+...+..+... . +--++.||.|..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~~~f~~~---~-~~~vI~TKlDet-- 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIYKHFSRL---P-LDGLIFTKLDET-- 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHHHHhCCC---C-CCEEEEeccccc--
Confidence 4678999999953221 12233333 2345678888863 223333333333321 1 225778999964
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHH
Q 027382 136 RAVPTEDAQEFAQRENLFFMETSALEATNV-ETAF 169 (224)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v-~~~~ 169 (224)
.....+..+....++|+..++ +|.+| +++.
T Consensus 371 --~~~G~i~~~~~~~~lPv~yit--~Gq~VpdDl~ 401 (424)
T PRK05703 371 --SSLGSILSLLIESGLPISYLT--NGQRVPDDIK 401 (424)
T ss_pred --ccccHHHHHHHHHCCCEEEEe--CCCCChhhhh
Confidence 234567888888888876664 36665 3443
No 402
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=3e-05 Score=63.80 Aligned_cols=140 Identities=17% Similarity=0.179 Sum_probs=75.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCC-------CccC--------------CcceeeEEEEE--EE-------C-CeE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSV-------DSKA--------------TIGVEFQTKTL--SI-------D-HKT 63 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~-------~~~~--------------~~~~~~~~~~~--~~-------~-~~~ 63 (224)
.-.|+++|+.||||||++..|...-... ..++ ..+..+....- .+ . ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3579999999999999999986421100 0000 00111110000 00 0 013
Q ss_pred EEEEEEeCCChhhhhh----hhHhHh--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC
Q 027382 64 VKAQIWDTAGQERYRA----VTSAYY--RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA 137 (224)
Q Consensus 64 ~~~~l~D~~G~~~~~~----~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 137 (224)
+.+.++||+|...... ....++ ...+.+++|+|++-. ...+...+..+... -+--++.||.|...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~----~idglI~TKLDET~--- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETA--- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence 5889999999533211 122222 245778899988632 22233344444331 12356689999643
Q ss_pred CCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382 138 VPTEDAQEFAQRENLFFMETSALEATNVE 166 (224)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 166 (224)
..-.+-.++...++|+..++ +|.+|.
T Consensus 392 -k~G~iLni~~~~~lPIsyit--~GQ~VP 417 (436)
T PRK11889 392 -SSGELLKIPAVSSAPIVLMT--DGQDVK 417 (436)
T ss_pred -CccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 45567777888888866654 244443
No 403
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.01 E-value=2.6e-05 Score=56.02 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=37.9
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD 131 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 131 (224)
.+.+.++||+|.. .....++..+|.+++|..++-.+.+..++- ..+. ..-++++||+|
T Consensus 91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~------~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAIKA--GIME------IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHhhh--hHhh------hcCEEEEeCCC
Confidence 4678999999854 223458888999999998874444433222 1122 22478889987
No 404
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.01 E-value=1.3e-05 Score=63.94 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=37.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccC------CcceeeEEEEEEECCeEEEEEEEeCCChhhh
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKA------TIGVEFQTKTLSIDHKTVKAQIWDTAGQERY 77 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 77 (224)
-.++++|++|+|||||+|.|++......... ...++.....+.+... ..++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 4689999999999999999998654322111 1112333333434322 258999996543
No 405
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.00 E-value=6.4e-05 Score=63.22 Aligned_cols=136 Identities=20% Similarity=0.110 Sum_probs=72.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCC----CCC------CccCC-----------cceeeEEEEEEE-----------C
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNE----FSV------DSKAT-----------IGVEFQTKTLSI-----------D 60 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~----~~~------~~~~~-----------~~~~~~~~~~~~-----------~ 60 (224)
..+..|+++|.+|+||||++..|...- ... .+.+. .+..+....... .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 346789999999999999998875411 100 00010 011111110000 0
Q ss_pred CeEEEEEEEeCCChhhhhhhh----H--hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 61 HKTVKAQIWDTAGQERYRAVT----S--AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 61 ~~~~~~~l~D~~G~~~~~~~~----~--~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
.....+.++||+|........ . ..+-.+|.+++|+|++... .+.+....+.+.. -..-+|.||.|...
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a 246 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA 246 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC
Confidence 112478999999954332111 1 1133678899999987642 2222223333221 12367789999642
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEEc
Q 027382 135 LRAVPTEDAQEFAQRENLFFMETS 158 (224)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~s 158 (224)
..-.+.......+.|+..++
T Consensus 247 ----~~G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 247 ----KGGGALSAVAETGAPIKFIG 266 (437)
T ss_pred ----cccHHHHHHHHHCcCEEEEe
Confidence 33456666667777655443
No 406
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.00 E-value=4.2e-05 Score=56.07 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=63.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeC-CC----------------------
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDT-AG---------------------- 73 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~G---------------------- 73 (224)
+|++.|++|+|||||+++++..-... ..+. .-+.+..+.-++...-+.+.|. .|
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v--~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPV--GGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGE--EEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCcc--ceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999988543111 1111 1122233333444445555555 22
Q ss_pred hhhhhh----hhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCC-CCCCCCCCCHHHHHHHHH
Q 027382 74 QERYRA----VTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKC-DLGSLRAVPTEDAQEFAQ 148 (224)
Q Consensus 74 ~~~~~~----~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~-D~~~~~~~~~~~~~~~~~ 148 (224)
.+.+.. .....+..+| ++|+|--.+-.+. ...+...+......+.|++.++.+. +. .-++++..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~-~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK-SPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC--CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc-CHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence 011111 1222234566 6666743321110 0112222222222468888887666 32 13667777
Q ss_pred HcCCeEEEEcCCCCCC
Q 027382 149 RENLFFMETSALEATN 164 (224)
Q Consensus 149 ~~~~~~~~~s~~~~~~ 164 (224)
..++.+++++..+...
T Consensus 147 ~~~~~i~~vt~~NRd~ 162 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDA 162 (168)
T ss_dssp TTTSEEEE--TTTCCC
T ss_pred CCCcEEEEeChhHHhh
Confidence 7788889887665443
No 407
>PRK10867 signal recognition particle protein; Provisional
Probab=97.98 E-value=8.2e-05 Score=62.44 Aligned_cols=86 Identities=15% Similarity=0.003 Sum_probs=48.0
Q ss_pred EEEEEEEeCCChhhhh----hhhHhH--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382 63 TVKAQIWDTAGQERYR----AVTSAY--YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~----~~~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 136 (224)
.+.+.++||+|..... .....+ .-..+.+++|+|+... ..+.+....+.+.. + ..-+|.||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~--~-i~giIlTKlD~~~-- 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL--G-LTGVILTKLDGDA-- 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC--C-CCEEEEeCccCcc--
Confidence 4679999999943221 111111 1256788999998653 22333333333321 1 2356679999642
Q ss_pred CCCHHHHHHHHHHcCCeEEEEc
Q 027382 137 AVPTEDAQEFAQRENLFFMETS 158 (224)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~s 158 (224)
..-.+.......++|+..++
T Consensus 255 --rgG~alsi~~~~~~PI~fig 274 (433)
T PRK10867 255 --RGGAALSIRAVTGKPIKFIG 274 (433)
T ss_pred --cccHHHHHHHHHCcCEEEEe
Confidence 23346667777777755554
No 408
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.95 E-value=0.00013 Score=59.06 Aligned_cols=85 Identities=11% Similarity=0.097 Sum_probs=48.1
Q ss_pred EEEEEEeCCChhhhhhhhHhHhc--------CCCEEEEEEeCCChhhH-HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 64 VKAQIWDTAGQERYRAVTSAYYR--------GAVGAMLVYDMTKRQSF-DHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 64 ~~~~l~D~~G~~~~~~~~~~~~~--------~~d~vi~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
....++++.|-.....+...++. ..++++.|+|+.+.... +........+.. -=++++||+|+.+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence 55678999996655554444322 24789999999763221 111111122221 1278889999875
Q ss_pred CCCCCHHHHHHHHHHcC--CeEEEEc
Q 027382 135 LRAVPTEDAQEFAQREN--LFFMETS 158 (224)
Q Consensus 135 ~~~~~~~~~~~~~~~~~--~~~~~~s 158 (224)
+ .+.+++..+..+ ++++.+.
T Consensus 165 ~----~~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 E----AEKLRERLARINARAPVYTVV 186 (318)
T ss_pred H----HHHHHHHHHHhCCCCEEEEec
Confidence 2 245666665544 4566543
No 409
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.94 E-value=0.00017 Score=60.60 Aligned_cols=86 Identities=15% Similarity=0.027 Sum_probs=49.5
Q ss_pred EEEEEEEeCCChhhhhh----hhHhH--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382 63 TVKAQIWDTAGQERYRA----VTSAY--YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~----~~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 136 (224)
.+.+.++||+|...... ....+ .-..|.+++|+|+.... .+..+...+....+ ..-+|.||.|...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v~---i~giIlTKlD~~~-- 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERLG---LTGVVLTKLDGDA-- 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhCC---CCEEEEeCccCcc--
Confidence 46789999999432211 11111 23578899999987532 33333333332221 2366689999642
Q ss_pred CCCHHHHHHHHHHcCCeEEEEc
Q 027382 137 AVPTEDAQEFAQRENLFFMETS 158 (224)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~s 158 (224)
....+...+...++|+..+.
T Consensus 254 --~~G~~lsi~~~~~~PI~fi~ 273 (428)
T TIGR00959 254 --RGGAALSVRSVTGKPIKFIG 273 (428)
T ss_pred --cccHHHHHHHHHCcCEEEEe
Confidence 23347777777788765554
No 410
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=1.2e-05 Score=65.39 Aligned_cols=159 Identities=19% Similarity=0.125 Sum_probs=96.8
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC-------------------CCc----c------CCcceeeEEEEEEECC
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFS-------------------VDS----K------ATIGVEFQTKTLSIDH 61 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~-------------------~~~----~------~~~~~~~~~~~~~~~~ 61 (224)
+....+++.++|+..+||||+-..++..... ..| - ...|.+...-...+..
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 3467899999999999999987766441110 000 0 1113333333444555
Q ss_pred eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChh---hHHHHH--HHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382 62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQ---SFDHMA--RWLDELRGHADKNIVIMLIGNKCDLGSLR 136 (224)
Q Consensus 62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~~~~--~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 136 (224)
...++.+.|.||+..|......-..+||..++|+++...+ .|+.-. +....+..... -...++++||+|-+...
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-v~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-VKHLIVLINKMDDPTVN 233 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-cceEEEEEEeccCCccC
Confidence 6678999999999988887777788999999999885421 222211 11111222111 34578889999965321
Q ss_pred --CCCHHH----HHHHHHHcC------CeEEEEcCCCCCCHHHHHH
Q 027382 137 --AVPTED----AQEFAQREN------LFFMETSALEATNVETAFL 170 (224)
Q Consensus 137 --~~~~~~----~~~~~~~~~------~~~~~~s~~~~~~v~~~~~ 170 (224)
...+++ +..|....+ ..|+++|..+|.++.+...
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 112222 223333322 3599999999999887653
No 411
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.90 E-value=0.00015 Score=61.59 Aligned_cols=142 Identities=20% Similarity=0.200 Sum_probs=75.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCC-c--------cCC--------------cceeeEEEEEE-------ECCeEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVD-S--------KAT--------------IGVEFQTKTLS-------IDHKTVK 65 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~-~--------~~~--------------~~~~~~~~~~~-------~~~~~~~ 65 (224)
--++++|+.||||||++..|.+...... . ++. .+......... ..-....
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 4589999999999999999876321100 0 000 01111000000 0012346
Q ss_pred EEEEeCCChhhhhh---hhHhHhcC---CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC
Q 027382 66 AQIWDTAGQERYRA---VTSAYYRG---AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP 139 (224)
Q Consensus 66 ~~l~D~~G~~~~~~---~~~~~~~~---~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 139 (224)
+.++||+|...... .....+.. ..-.++|+|++.. ...+.+....+.. ...--+|+||.|.. ..
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~~----~~~~g~IlTKlDet----~~ 406 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYRG----PGLAGCILTKLDEA----AS 406 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhcc----CCCCEEEEeCCCCc----cc
Confidence 88999999332211 11111221 2236788888742 2223333333322 12345678999964 34
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCCH-HHHH
Q 027382 140 TEDAQEFAQRENLFFMETSALEATNV-ETAF 169 (224)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~s~~~~~~v-~~~~ 169 (224)
...+-.+....++++..++ +|++| +++.
T Consensus 407 ~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~ 435 (484)
T PRK06995 407 LGGALDVVIRYKLPLHYVS--NGQRVPEDLH 435 (484)
T ss_pred chHHHHHHHHHCCCeEEEe--cCCCChhhhc
Confidence 5677888888888877664 46666 4443
No 412
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.88 E-value=5.2e-05 Score=44.40 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=30.2
Q ss_pred HhcCCCEEEEEEeCCCh--hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 027382 84 YYRGAVGAMLVYDMTKR--QSFDHMARWLDELRGHADKNIVIMLIGNKCD 131 (224)
Q Consensus 84 ~~~~~d~vi~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 131 (224)
.-.-.++++|++|++.. .+.+.....+..++.... +.|+++|.||+|
T Consensus 10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 33457889999999974 456666667777776654 799999999998
No 413
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.88 E-value=4.3e-05 Score=54.24 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=63.1
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEE--CCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382 19 VLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSI--DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 96 (224)
Q Consensus 19 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 96 (224)
+.-|.+|+|||++--.+...-.. . |...-....+. ....+.+.++|+|+.. .......+..+|.++++.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~-~-----~~~~~~vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~ 75 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAK-L-----GKRVLLLDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTT 75 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHH-C-----CCcEEEEECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcC
Confidence 45678899999997666432110 0 10001111110 1112789999999753 3334567889999999998
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382 97 MTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133 (224)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 133 (224)
.+- .++......++.+.+.. ...++.+++|+.+..
T Consensus 76 ~~~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 76 PEP-TSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred CCh-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 864 55555555555554433 245678999999853
No 414
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.85 E-value=0.00013 Score=57.83 Aligned_cols=95 Identities=13% Similarity=0.061 Sum_probs=68.5
Q ss_pred hhhhHhHhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 027382 78 RAVTSAYYRGAVGAMLVYDMTKRQ-SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFME 156 (224)
Q Consensus 78 ~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (224)
..+.+....+.|-+++|+.+.+|+ +...+.+++-..... ++..++++||+|+.+.......+........+.+++.
T Consensus 70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~ 146 (301)
T COG1162 70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLF 146 (301)
T ss_pred CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEE
Confidence 344455556688888888898875 566666676655543 5667888999999764433224566677778889999
Q ss_pred EcCCCCCCHHHHHHHHHHH
Q 027382 157 TSALEATNVETAFLTVLTE 175 (224)
Q Consensus 157 ~s~~~~~~v~~~~~~i~~~ 175 (224)
+|++++.+++++...+...
T Consensus 147 ~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 147 VSAKNGDGLEELAELLAGK 165 (301)
T ss_pred ecCcCcccHHHHHHHhcCC
Confidence 9999999998887776544
No 415
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=0.00025 Score=63.23 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=81.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCC-Cc-c-------CC--------------cceeeEEEEE--E----E-CCeEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSV-DS-K-------AT--------------IGVEFQTKTL--S----I-DHKTVK 65 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~-~~-~-------~~--------------~~~~~~~~~~--~----~-~~~~~~ 65 (224)
--|+++|+.|+||||++..|....... .. . .. .+..+....- . + ....+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 357999999999999999988643111 00 0 00 0111110000 0 0 012357
Q ss_pred EEEEeCCChhhh----hhhhHhH--hcCCCEEEEEEeCCC-hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC
Q 027382 66 AQIWDTAGQERY----RAVTSAY--YRGAVGAMLVYDMTK-RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV 138 (224)
Q Consensus 66 ~~l~D~~G~~~~----~~~~~~~--~~~~d~vi~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~ 138 (224)
+.++||+|.... ....... ....+-.++|+|++. .+.+.++. ..+...... -+--+|+||.|.. .
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~~-~i~glIlTKLDEt----~ 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAGE-DVDGCIITKLDEA----T 337 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhcccC-CCCEEEEeccCCC----C
Confidence 899999993211 1111111 123456889999874 33344333 333322110 1235678999964 2
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHHHHHHHHHHH
Q 027382 139 PTEDAQEFAQRENLFFMETSALEATNV-ETAFLTVLTEIYR 178 (224)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~s~~~~~~v-~~~~~~i~~~i~~ 178 (224)
..-.+-.+....++|+..++ +|++| +++...=-+.+.+
T Consensus 338 ~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~a~~~~lv~ 376 (767)
T PRK14723 338 HLGPALDTVIRHRLPVHYVS--TGQKVPEHLELAQADELVD 376 (767)
T ss_pred CccHHHHHHHHHCCCeEEEe--cCCCChhhcccCCHHHHHH
Confidence 45567788888888877664 46666 4444333333333
No 416
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.84 E-value=3.4e-05 Score=57.22 Aligned_cols=83 Identities=20% Similarity=0.134 Sum_probs=43.4
Q ss_pred EEEEEEEeCCChhhhhhh---h--HhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC
Q 027382 63 TVKAQIWDTAGQERYRAV---T--SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA 137 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~---~--~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 137 (224)
.....++++.|......+ . ....-..+.+|.|+|+............+..-.+.. =++++||+|+.+..
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A-----DvIvlnK~D~~~~~- 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA-----DVIVLNKIDLVSDE- 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH-
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc-----CEEEEeccccCChh-
Confidence 356778888884433333 0 111235688999999977543444444333222222 27888999986422
Q ss_pred CCHHHHHHHHHHcC
Q 027382 138 VPTEDAQEFAQREN 151 (224)
Q Consensus 138 ~~~~~~~~~~~~~~ 151 (224)
...+..++..++.+
T Consensus 158 ~~i~~~~~~ir~ln 171 (178)
T PF02492_consen 158 QKIERVREMIRELN 171 (178)
T ss_dssp --HHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHC
Confidence 12245555555543
No 417
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.84 E-value=0.00063 Score=55.03 Aligned_cols=135 Identities=19% Similarity=0.210 Sum_probs=74.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCC------CccCCccee----------------eEEEEEEEC-------------Ce
Q 027382 18 VVLIGDSAVGKSQLLARFARNEFSV------DSKATIGVE----------------FQTKTLSID-------------HK 62 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~----------------~~~~~~~~~-------------~~ 62 (224)
.++-|.=|||||||++.++.+.... +.-..++++ -.+.-+++. ..
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 3678999999999999998754310 000011111 011111110 12
Q ss_pred EEEEEEEeCCChhhhhhhhHhHh--------cCCCEEEEEEeCCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYY--------RGAVGAMLVYDMTKRQS-FDHMARWLDELRGHADKNIVIMLIGNKCDLG 133 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~--------~~~d~vi~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 133 (224)
.....++++.|-.........+. -..|+++-|+|+..-.. .....+.+..-...+ =++++||.|+.
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-----D~ivlNK~Dlv 158 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-----DVIVLNKTDLV 158 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-----cEEEEecccCC
Confidence 25677899988444433333222 24578999999987333 222233222211222 28889999997
Q ss_pred CCCCCCHHHHHHHHHHcC--CeEEEEcC
Q 027382 134 SLRAVPTEDAQEFAQREN--LFFMETSA 159 (224)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~~~~s~ 159 (224)
+... .+.++...++.+ +++++++.
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence 6332 455666666655 56888776
No 418
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.84 E-value=0.00013 Score=48.97 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=51.6
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382 18 VVLIG-DSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 96 (224)
Q Consensus 18 i~v~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 96 (224)
|.+.| ..|+||||+...+...-.. . +... ..++.+.. +.+.++|+|+..... ....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~-----~~~v--l~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-R-----GKRV--LLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-C-----CCcE--EEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 55666 5699999998877543221 1 1111 11222211 788999999864332 3367778999999998
Q ss_pred CCChhhHHHHHHHHH
Q 027382 97 MTKRQSFDHMARWLD 111 (224)
Q Consensus 97 ~~~~~s~~~~~~~~~ 111 (224)
.+. .++..+.++++
T Consensus 71 ~~~-~s~~~~~~~~~ 84 (104)
T cd02042 71 PSP-LDLDGLEKLLE 84 (104)
T ss_pred CCH-HHHHHHHHHHH
Confidence 754 66666666655
No 419
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00063 Score=56.44 Aligned_cols=154 Identities=12% Similarity=0.068 Sum_probs=82.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC--------CCC--c-cC--------------CcceeeEEEEEE-------ECC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEF--------SVD--S-KA--------------TIGVEFQTKTLS-------IDH 61 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~--------~~~--~-~~--------------~~~~~~~~~~~~-------~~~ 61 (224)
..-.|+++|+.|+||||.+..|...-. ... . ++ -.+..+...... -..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 345789999999999999988864211 000 0 00 001111111100 012
Q ss_pred eEEEEEEEeCCChhhhhh----hhHhHhcC--CC-EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 62 KTVKAQIWDTAGQERYRA----VTSAYYRG--AV-GAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 62 ~~~~~~l~D~~G~~~~~~----~~~~~~~~--~d-~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
..+.+.++||+|...... ....++.. .+ -.++|+|++.. ...+.+.+..+... -+--++.||.|..
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet- 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDET- 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCC-
Confidence 346799999999432211 12222332 13 58899999863 33333444444321 1235678999964
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH-HHHHHHHHHHHHHH
Q 027382 135 LRAVPTEDAQEFAQRENLFFMETSALEATNV-ETAFLTVLTEIYRI 179 (224)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v-~~~~~~i~~~i~~~ 179 (224)
...-.+-.++...+.|+..++ +|.++ +++...=.+.+.+.
T Consensus 326 ---~~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~~~~~~~~~~ 366 (388)
T PRK12723 326 ---TCVGNLISLIYEMRKEVSYVT--DGQIVPHNISIAEPLTFIKK 366 (388)
T ss_pred ---CcchHHHHHHHHHCCCEEEEe--CCCCChhhhhhCCHHHHHHH
Confidence 345567778888888876664 36666 44433333333333
No 420
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.78 E-value=0.00051 Score=56.51 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=74.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcc-eeeEEEE-----------------EEE------------CCeEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIG-VEFQTKT-----------------LSI------------DHKTV 64 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~-----------------~~~------------~~~~~ 64 (224)
.-.|+++|+.||||||-+-.|...-........++ ++..+.. +.+ ....+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 55689999999999999988876443111111110 0111000 000 02346
Q ss_pred EEEEEeCCChhhhhhh----hHhHhcCC--CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC
Q 027382 65 KAQIWDTAGQERYRAV----TSAYYRGA--VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV 138 (224)
Q Consensus 65 ~~~l~D~~G~~~~~~~----~~~~~~~~--d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~ 138 (224)
.+.++||.|...++.. ...++..+ .-+.+|++++. ....+...+..+.... + --++.||.|.. .
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~~---i-~~~I~TKlDET----~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLFP---I-DGLIFTKLDET----T 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccCC---c-ceeEEEccccc----C
Confidence 7999999995444322 33333322 33666777764 3444555555554321 1 24567999964 3
Q ss_pred CHHHHHHHHHHcCCeEEEEc
Q 027382 139 PTEDAQEFAQRENLFFMETS 158 (224)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~s 158 (224)
+...+-....+.+.|+-.++
T Consensus 353 s~G~~~s~~~e~~~PV~YvT 372 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYVT 372 (407)
T ss_pred chhHHHHHHHHhCCCeEEEe
Confidence 56667777777777755553
No 421
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00013 Score=59.18 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=60.2
Q ss_pred CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCC---------------------cceeeEEEEEEE------
Q 027382 7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKAT---------------------IGVEFQTKTLSI------ 59 (224)
Q Consensus 7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~---------------------~~~~~~~~~~~~------ 59 (224)
+++.....+=-|+++|-.|+||||.+-.|........+.+. .++.++......
T Consensus 93 ~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia 172 (483)
T KOG0780|consen 93 ALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIA 172 (483)
T ss_pred ccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHH
Confidence 34455556667899999999999999888653222211111 022222221111
Q ss_pred -------CCeEEEEEEEeCCChhhhhh-hhHh---H--hcCCCEEEEEEeCCChhhHHHHHHHH
Q 027382 60 -------DHKTVKAQIWDTAGQERYRA-VTSA---Y--YRGAVGAMLVYDMTKRQSFDHMARWL 110 (224)
Q Consensus 60 -------~~~~~~~~l~D~~G~~~~~~-~~~~---~--~~~~d~vi~v~d~~~~~s~~~~~~~~ 110 (224)
..+.+.+.+.||+|...... +... . .-..|-+|||.|++-........+.+
T Consensus 173 ~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 173 SEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred HHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 14458899999999442221 1111 1 22578999999998765544444433
No 422
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00025 Score=58.27 Aligned_cols=140 Identities=19% Similarity=0.187 Sum_probs=74.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCC----------CccC-C----------cceeeEEEEE--EE-------C-CeE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSV----------DSKA-T----------IGVEFQTKTL--SI-------D-HKT 63 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~----------~~~~-~----------~~~~~~~~~~--~~-------~-~~~ 63 (224)
.-.++++|+.||||||++..|....... .+.. . .+..+....- .+ . ...
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~ 285 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC 285 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence 4458999999999999999886421100 0000 0 0111110000 00 0 024
Q ss_pred EEEEEEeCCChhhhh----hhhHhHhc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC
Q 027382 64 VKAQIWDTAGQERYR----AVTSAYYR--GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA 137 (224)
Q Consensus 64 ~~~~l~D~~G~~~~~----~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 137 (224)
+.+.++||+|..... .....+.. ..+.+++|.++. .....+...+..+.. --+--++.||.|..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~~----l~i~glI~TKLDET---- 355 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLAE----IPIDGFIITKMDET---- 355 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcCc----CCCCEEEEEcccCC----
Confidence 689999999963221 11222222 346667777664 223333333333322 12246678999964
Q ss_pred CCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382 138 VPTEDAQEFAQRENLFFMETSALEATNVE 166 (224)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 166 (224)
...-.+-..+...+.|+..++. |.++.
T Consensus 356 ~~~G~~Lsv~~~tglPIsylt~--GQ~Vp 382 (407)
T PRK12726 356 TRIGDLYTVMQETNLPVLYMTD--GQNIT 382 (407)
T ss_pred CCccHHHHHHHHHCCCEEEEec--CCCCC
Confidence 3456677888888888766653 44444
No 423
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.69 E-value=2.9e-05 Score=57.84 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
+-++|+|+.||||||+.+.+..
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHH
Confidence 5578999999999999998865
No 424
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.68 E-value=3.9e-05 Score=62.27 Aligned_cols=58 Identities=24% Similarity=0.414 Sum_probs=43.5
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG 73 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 73 (224)
-...|+++|+|-|++||||+||.|..+.. ....+..|.|.....+.++ -.+.|+|.||
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~-C~vg~~pGvT~smqeV~Ld---k~i~llDsPg 306 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKA-CNVGNVPGVTRSMQEVKLD---KKIRLLDSPG 306 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhcc-ccCCCCccchhhhhheecc---CCceeccCCc
Confidence 46789999999999999999999998765 3333344566555555443 3678999999
No 425
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.00069 Score=56.46 Aligned_cols=135 Identities=19% Similarity=0.235 Sum_probs=72.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC-CCCC-------cc--------------CCcceeeEEEE-E-----EECCeEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNE-FSVD-------SK--------------ATIGVEFQTKT-L-----SIDHKTVKA 66 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~-~~~~-------~~--------------~~~~~~~~~~~-~-----~~~~~~~~~ 66 (224)
..-++++|++||||||++.+|.... .... .+ ...+....... . .+....+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3468899999999999999987521 1000 00 00011111100 0 001135678
Q ss_pred EEEeCCChhhh----hhhhHhHhc-----CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC
Q 027382 67 QIWDTAGQERY----RAVTSAYYR-----GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA 137 (224)
Q Consensus 67 ~l~D~~G~~~~----~~~~~~~~~-----~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 137 (224)
.++||+|.... -..+..++. ...-.++|+|++.. .+.+...+..+... -+--+|.||.|..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~~~----~~~glIlTKLDEt---- 372 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAYESL----NYRRILLTKLDEA---- 372 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhcCC----CCCEEEEEcccCC----
Confidence 99999994321 111222222 23357889998753 22233333333221 1235678999964
Q ss_pred CCHHHHHHHHHHcCCeEEEEcC
Q 027382 138 VPTEDAQEFAQRENLFFMETSA 159 (224)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~s~ 159 (224)
...-.+-......+.|+..++.
T Consensus 373 ~~~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 373 DFLGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred CCccHHHHHHHHHCCCEEEEec
Confidence 2345577777788888666643
No 426
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.67 E-value=0.00046 Score=54.44 Aligned_cols=139 Identities=17% Similarity=0.165 Sum_probs=75.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC----CC-----------------ccCCcceeeEEEEE--E-------E-CCeEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFS----VD-----------------SKATIGVEFQTKTL--S-------I-DHKTV 64 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~----~~-----------------~~~~~~~~~~~~~~--~-------~-~~~~~ 64 (224)
-+++++|++|+||||++..+...... .. +....+..+....- . + ....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 58999999999999999887553110 00 00001111111000 0 0 01246
Q ss_pred EEEEEeCCChhhhh----hhhHhHh--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC
Q 027382 65 KAQIWDTAGQERYR----AVTSAYY--RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV 138 (224)
Q Consensus 65 ~~~l~D~~G~~~~~----~~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~ 138 (224)
.+.++||+|..... ..+..++ ...+-+++|+|++. ....+..++..+... -+--++.||.|...
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~--~~~d~~~~~~~f~~~----~~~~~I~TKlDet~---- 225 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM--KSKDMIEIITNFKDI----HIDGIVFTKFDETA---- 225 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc--CHHHHHHHHHHhCCC----CCCEEEEEeecCCC----
Confidence 89999999954221 1112222 24567899999873 122233333334331 22356789999653
Q ss_pred CHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382 139 PTEDAQEFAQRENLFFMETSALEATNVE 166 (224)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 166 (224)
..-.+-.++...+.|+..++ +|.++.
T Consensus 226 ~~G~~l~~~~~~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 226 SSGELLKIPAVSSAPIVLMT--DGQDVK 251 (270)
T ss_pred CccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 34567777778888866664 244444
No 427
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.65 E-value=0.00046 Score=52.50 Aligned_cols=78 Identities=24% Similarity=0.196 Sum_probs=49.1
Q ss_pred EEEEEEeC-CChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHH
Q 027382 64 VKAQIWDT-AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTED 142 (224)
Q Consensus 64 ~~~~l~D~-~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~ 142 (224)
..+.++|| +|.+.+ -+.....+|.+|.|+|++- .++..+++.-+...+.. -.++.+|+||.|-. ...
T Consensus 134 ~e~VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~-~sl~taeri~~L~~elg--~k~i~~V~NKv~e~------e~~ 201 (255)
T COG3640 134 YEVVIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEELG--IKRIFVVLNKVDEE------EEL 201 (255)
T ss_pred CcEEEEecccchhhh---ccccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC--CceEEEEEeeccch------hHH
Confidence 33555554 233322 2445678999999999986 77777766554444432 26799999999953 334
Q ss_pred HHHHHHHcCCe
Q 027382 143 AQEFAQRENLF 153 (224)
Q Consensus 143 ~~~~~~~~~~~ 153 (224)
+...+...+.+
T Consensus 202 ~~~~~~~~~~~ 212 (255)
T COG3640 202 LRELAEELGLE 212 (255)
T ss_pred HHhhhhccCCe
Confidence 55555555543
No 428
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.62 E-value=5.8e-05 Score=59.50 Aligned_cols=61 Identities=25% Similarity=0.414 Sum_probs=39.9
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC----ccCCcceeeEEEE-EEECCeEEEEEEEeCCC
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVD----SKATIGVEFQTKT-LSIDHKTVKAQIWDTAG 73 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~G 73 (224)
.+..++++|+|-||+|||||+|++........ ..+-.|.+..... +.+... -.+.++||||
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPG 205 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPG 205 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCC
Confidence 45778999999999999999999876443222 1122244444433 333222 2478999999
No 429
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.59 E-value=0.00063 Score=44.47 Aligned_cols=76 Identities=22% Similarity=0.160 Sum_probs=48.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh-hHhHhcCCCEEEEEEe
Q 027382 18 VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV-TSAYYRGAVGAMLVYD 96 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-~~~~~~~~d~vi~v~d 96 (224)
+++.|..|+||||+...+...-... +... ..++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g~~v----~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR------GKRV----LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC------CCeE----EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 6788999999999998887543211 1111 1111 7899999985433221 2456678899999998
Q ss_pred CCChhhHHHHHH
Q 027382 97 MTKRQSFDHMAR 108 (224)
Q Consensus 97 ~~~~~s~~~~~~ 108 (224)
... .+......
T Consensus 68 ~~~-~~~~~~~~ 78 (99)
T cd01983 68 PEA-LAVLGARR 78 (99)
T ss_pred Cch-hhHHHHHH
Confidence 865 44444443
No 430
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.59 E-value=0.0027 Score=46.99 Aligned_cols=87 Identities=17% Similarity=0.115 Sum_probs=48.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEE--EEeCC-ChhhhhhhhHhHhcCCCEEEE
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQ--IWDTA-GQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~D~~-G~~~~~~~~~~~~~~~d~vi~ 93 (224)
.++++|+.|+|||||++.+.+...+.. |. +.+++..+.+. ..+.+ |+...-.+....+.+.+.+++
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~-----G~------i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNG-----DN------DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCC-----cE------EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 579999999999999999987543221 11 11112111111 11134 344445566677777775444
Q ss_pred E--EeCCChhhHHHHHHHHHHHH
Q 027382 94 V--YDMTKRQSFDHMARWLDELR 114 (224)
Q Consensus 94 v--~d~~~~~s~~~~~~~~~~~~ 114 (224)
= ...-|+.+...+.+++..+.
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHH
Confidence 1 11224556666666666554
No 431
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.56 E-value=0.00091 Score=47.00 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
-.+++.|++|+|||+|++.+.....
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 4589999999999999999987553
No 432
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.55 E-value=0.00054 Score=46.20 Aligned_cols=100 Identities=21% Similarity=0.120 Sum_probs=59.7
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCCh
Q 027382 21 IGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR 100 (224)
Q Consensus 21 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~ 100 (224)
=+..|+||||+.-.|...-.... |........+..... .+.++|+|+.... .....+..+|.++++.+.+-
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~-----~~~~~l~d~d~~~~~-D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~- 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEA-----GRRVLLVDLDLQFGD-DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL- 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcC-----CCcEEEEECCCCCCC-CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-
Confidence 35678999998777654221110 111111111111111 7899999985432 34457788999999987754
Q ss_pred hhHHHHHHHHHHHHhcCCC-CCcEEEEEeC
Q 027382 101 QSFDHMARWLDELRGHADK-NIVIMLIGNK 129 (224)
Q Consensus 101 ~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK 129 (224)
.+...+..+++.+.+.... ...+.+|+|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 6777777777777665433 3456677764
No 433
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.53 E-value=0.0047 Score=44.89 Aligned_cols=140 Identities=10% Similarity=0.071 Sum_probs=93.9
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEe-CCChhhhhhhhHhHhcCCCE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWD-TAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D-~~G~~~~~~~~~~~~~~~d~ 90 (224)
.-+.-.|+++|..+.++..|.+++..... . +. +++++-- .|=.. .....-...|.
T Consensus 12 ~ln~atiLLVg~e~~~~~~LA~a~l~~~~--~--------~~----------l~Vh~a~sLPLp~----e~~~lRprIDl 67 (176)
T PF11111_consen 12 ELNTATILLVGTEEALLQQLAEAMLEEDK--E--------FK----------LKVHLAKSLPLPS----ENNNLRPRIDL 67 (176)
T ss_pred CcceeEEEEecccHHHHHHHHHHHHhhcc--c--------ee----------EEEEEeccCCCcc----cccCCCceeEE
Confidence 34578899999999999999999985221 0 01 1111111 01000 01112346899
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
|+|++|.....++..++.-+..+.-..-.+. +.++++-....+...+...++.+++..+++|++...-.+..+...+-.
T Consensus 68 IVFvinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAq 146 (176)
T PF11111_consen 68 IVFVINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQ 146 (176)
T ss_pred EEEEEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHH
Confidence 9999999999999999988776654433333 455556666555567889999999999999999998877776665555
Q ss_pred HHHHHH
Q 027382 171 TVLTEI 176 (224)
Q Consensus 171 ~i~~~i 176 (224)
.+++.+
T Consensus 147 RLL~~l 152 (176)
T PF11111_consen 147 RLLRML 152 (176)
T ss_pred HHHHHH
Confidence 555443
No 434
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.001 Score=55.14 Aligned_cols=116 Identities=19% Similarity=0.132 Sum_probs=63.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCC----------CCccCC-----------cceeeEEEEEE-----E------
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFS----------VDSKAT-----------IGVEFQTKTLS-----I------ 59 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~----------~~~~~~-----------~~~~~~~~~~~-----~------ 59 (224)
...+..|+++|-.|+||||..-.|...-.. ..|.|. .+..++..... +
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 456778999999999999998776542110 011111 02222221000 0
Q ss_pred --CCeEEEEEEEeCCChhhhhhhhH------hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 027382 60 --DHKTVKAQIWDTAGQERYRAVTS------AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD 131 (224)
Q Consensus 60 --~~~~~~~~l~D~~G~~~~~~~~~------~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 131 (224)
....+.+.++||+|........- ...-+.|-+++|+|+.-..........+ .+..+ + --+|++|.|
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF---~e~l~--i-tGvIlTKlD 250 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAF---NEALG--I-TGVILTKLD 250 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHH---hhhcC--C-ceEEEEccc
Confidence 02236899999999544322211 1123678899999997654433333322 22111 1 256679999
Q ss_pred CC
Q 027382 132 LG 133 (224)
Q Consensus 132 ~~ 133 (224)
-.
T Consensus 251 Gd 252 (451)
T COG0541 251 GD 252 (451)
T ss_pred CC
Confidence 74
No 435
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.49 E-value=0.00019 Score=50.11 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
-++|.|++|+|||++++++....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998754
No 436
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.47 E-value=0.0018 Score=47.93 Aligned_cols=86 Identities=21% Similarity=0.258 Sum_probs=62.5
Q ss_pred eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHH
Q 027382 62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTE 141 (224)
Q Consensus 62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~ 141 (224)
..+.+.++|+|+.... .....+..+|.+++++..+. .+...+..+++.+.+. +.|+.+|+|+.|... ....
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence 5678999999975322 34456788999999998874 5666677777666653 467889999999743 2345
Q ss_pred HHHHHHHHcCCeEEE
Q 027382 142 DAQEFAQRENLFFME 156 (224)
Q Consensus 142 ~~~~~~~~~~~~~~~ 156 (224)
++++++++.+++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 688888888887653
No 437
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.39 E-value=0.0019 Score=44.81 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (224)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998653
No 438
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.38 E-value=0.00019 Score=54.52 Aligned_cols=31 Identities=35% Similarity=0.427 Sum_probs=24.8
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCC
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
..+.....-|+|+|++|||||||++.|....
T Consensus 7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 7 FNKPAKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred cCCCCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 3445566678899999999999999997643
No 439
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.38 E-value=0.0048 Score=50.55 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027382 18 VVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (224)
.+|.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578899999999999999864
No 440
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.38 E-value=0.00017 Score=49.67 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.|+|.|.+||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 441
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.36 E-value=0.0079 Score=44.18 Aligned_cols=84 Identities=13% Similarity=0.010 Sum_probs=53.0
Q ss_pred EEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHH
Q 027382 65 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQ 144 (224)
Q Consensus 65 ~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~ 144 (224)
.+.++|+|+.... .....+..+|.+|++++.+. .++..+..+++.+.... .....+++|+.+.... ...+..+
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~--~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMV--EGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCccccc--chhhHHH
Confidence 7899999975433 24455788999999998865 55666666666665532 2346788999986432 1222234
Q ss_pred HHHHHcCCeEE
Q 027382 145 EFAQRENLFFM 155 (224)
Q Consensus 145 ~~~~~~~~~~~ 155 (224)
.+.+..+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 55555666544
No 442
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.35 E-value=0.01 Score=42.28 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 36899999999999999998765
No 443
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.34 E-value=8.2e-05 Score=56.43 Aligned_cols=69 Identities=14% Similarity=0.059 Sum_probs=37.3
Q ss_pred EEEEEEEeCCChhhhh------hhhHhHhcCCCEEEEEEeCC------ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 027382 63 TVKAQIWDTAGQERYR------AVTSAYYRGAVGAMLVYDMT------KRQSFDHMARWLDELRGHADKNIVIMLIGNKC 130 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~------~~~~~~~~~~d~vi~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 130 (224)
.-.+.++|+|||-++. ......+.+-|.=+.++... +|..+- ..++..+.....-..|-+-|..|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~i--S~lL~sl~tMl~melphVNvlSK~ 173 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFI--SSLLVSLATMLHMELPHVNVLSKA 173 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHH--HHHHHHHHHHHhhcccchhhhhHh
Confidence 3468899999965441 11222333455544444443 344432 223333332222368889999999
Q ss_pred CCC
Q 027382 131 DLG 133 (224)
Q Consensus 131 D~~ 133 (224)
|+-
T Consensus 174 Dl~ 176 (290)
T KOG1533|consen 174 DLL 176 (290)
T ss_pred HHH
Confidence 973
No 444
>PRK08118 topology modulation protein; Reviewed
Probab=97.32 E-value=0.0002 Score=52.50 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
+|+|+|++|||||||.+.|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999864
No 445
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.29 E-value=0.0016 Score=45.68 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
-|++.|+.|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
No 446
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.00023 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.677 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.+|+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 447
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.28 E-value=0.00031 Score=42.15 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
..+|.|+.|+|||||+.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999998864
No 448
>PRK07261 topology modulation protein; Provisional
Probab=97.27 E-value=0.00025 Score=52.17 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
+|+|+|.+|||||||.+.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998753
No 449
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.24 E-value=0.00026 Score=50.21 Aligned_cols=21 Identities=38% Similarity=0.657 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027382 18 VVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (224)
|+++|++|||||||++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999843
No 450
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.22 E-value=0.0023 Score=51.36 Aligned_cols=145 Identities=15% Similarity=0.160 Sum_probs=79.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-------CC--------------cceeeEEEEE-------EE----
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-------AT--------------IGVEFQTKTL-------SI---- 59 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-------~~--------------~~~~~~~~~~-------~~---- 59 (224)
...++-|+++|-.|+||||-|-.|...-...... ++ .|..+..... -+
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 3458889999999999999988775522111110 00 0222211110 00
Q ss_pred --CCeEEEEEEEeCCChhhhhhh-------hHhHhcCCCE-----EEEEEeCCC-hhhHHHHHHHHHHHHhcCCCCCcEE
Q 027382 60 --DHKTVKAQIWDTAGQERYRAV-------TSAYYRGAVG-----AMLVYDMTK-RQSFDHMARWLDELRGHADKNIVIM 124 (224)
Q Consensus 60 --~~~~~~~~l~D~~G~~~~~~~-------~~~~~~~~d~-----vi~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~i 124 (224)
....+.+.++||+|.-.-... .....+..+. ++++.|++- ..++.+++.+.+.+ . ---
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav-~------l~G 288 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV-G------LDG 288 (340)
T ss_pred HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc-C------Cce
Confidence 123578999999993211111 2223333433 888889876 45566555433222 1 135
Q ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382 125 LIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169 (224)
Q Consensus 125 lv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 169 (224)
+++||.|-.. ..--+-..+...++|+..+-. |++++++.
T Consensus 289 iIlTKlDgtA----KGG~il~I~~~l~~PI~fiGv--GE~~~DL~ 327 (340)
T COG0552 289 IILTKLDGTA----KGGIILSIAYELGIPIKFIGV--GEGYDDLR 327 (340)
T ss_pred EEEEecccCC----CcceeeeHHHHhCCCEEEEeC--CCChhhcc
Confidence 6789999532 122355666778888666643 55555553
No 451
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.00038 Score=53.51 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
|.++|++|||||||++.+.+-..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999999999988554
No 452
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.20 E-value=0.003 Score=50.20 Aligned_cols=105 Identities=19% Similarity=0.255 Sum_probs=62.2
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC-----------------
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG----------------- 73 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------------- 73 (224)
+..+.-+++++|++|.|||++++++....... ..+. . ..+.+.++..|.
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~-~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED-A------------ERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCC-C------------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 34456679999999999999999999866432 2111 1 122344445443
Q ss_pred -------hhhhhhhhHhHhcCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhcCC-CCCcEEEEEeC
Q 027382 74 -------QERYRAVTSAYYRGAVGAMLVYDMTK---RQSFDHMARWLDELRGHAD-KNIVIMLIGNK 129 (224)
Q Consensus 74 -------~~~~~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK 129 (224)
...........++....=++++|--. ..+....+..++.++...+ -.+|++.+++.
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 11112233455677777778887432 2334444555555555443 47889988865
No 453
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.15 E-value=0.00048 Score=42.56 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (224)
|++.|.+|+||||+.++|...-
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998653
No 454
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.14 E-value=0.00027 Score=51.50 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 455
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.12 E-value=0.00061 Score=51.33 Aligned_cols=24 Identities=46% Similarity=0.475 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
.++++|++|||||||++.+.+-+.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 489999999999999999977554
No 456
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.12 E-value=0.00044 Score=51.63 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.=|+|+|++|||||||+++|+...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 348999999999999999998754
No 457
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.12 E-value=0.00053 Score=52.34 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
|+|+|++|||||||+|-+-+-..
T Consensus 34 vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcccC
Confidence 89999999999999999976543
No 458
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.00028 Score=51.87 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.-++|.|++|+|||||+++|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999999876
No 459
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.09 E-value=0.00062 Score=48.20 Aligned_cols=21 Identities=52% Similarity=0.748 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027382 18 VVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (224)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 460
>PRK10646 ADP-binding protein; Provisional
Probab=97.07 E-value=0.006 Score=43.80 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
-|++-|+-|+|||||++.+...-
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999997643
No 461
>PRK04195 replication factor C large subunit; Provisional
Probab=97.06 E-value=0.017 Score=49.79 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.--++|.|++|+||||+++.+....
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3458999999999999999997643
No 462
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.06 E-value=0.00054 Score=48.23 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 47999999999999999998754
No 463
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.05 E-value=0.0022 Score=46.60 Aligned_cols=56 Identities=32% Similarity=0.314 Sum_probs=35.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA 88 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 88 (224)
.+++.|++|+|||||++.+..--. ++.| .+.+.++++. +-+.+.|+.....+....
T Consensus 31 ~iaitGPSG~GKStllk~va~Lis-----p~~G------~l~f~Ge~vs-----~~~pea~Rq~VsY~~Q~p 86 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLIS-----PTSG------TLLFEGEDVS-----TLKPEAYRQQVSYCAQTP 86 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccC-----CCCc------eEEEcCcccc-----ccChHHHHHHHHHHHcCc
Confidence 479999999999999999975432 1212 2224444433 556677776666665444
No 464
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.02 E-value=0.0083 Score=45.94 Aligned_cols=103 Identities=10% Similarity=0.095 Sum_probs=63.2
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCC--hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCH
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTK--RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPT 140 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 140 (224)
.+.+.++|+.|.... .....+..+|.+|+=.-.+. -+.......|+..+.+.....+|.-++.|+..-.. .....
T Consensus 83 ~~d~VlvDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~ 159 (231)
T PF07015_consen 83 GFDFVLVDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQ 159 (231)
T ss_pred CCCEEEEeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHH
Confidence 367899999885422 34556678998888666653 33333344455555544456799999999987421 11112
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382 141 EDAQEFAQRENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 141 ~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
..+.++.. ++|++.+...+..-..++|.
T Consensus 160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 160 RIISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence 22334443 48888888776665555555
No 465
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.00 E-value=0.0046 Score=43.93 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
.--|++-|+-|+|||||.+.+...-.
T Consensus 25 g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 25 GDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 34578999999999999999876543
No 466
>PRK01889 GTPase RsgA; Reviewed
Probab=96.99 E-value=0.00082 Score=55.37 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
-+++++|.+|+|||||+|.|.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 3789999999999999999997544
No 467
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.97 E-value=0.0045 Score=46.68 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (224)
|+|+|++||||||+++.++...
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987654
No 468
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.95 E-value=0.00069 Score=55.31 Aligned_cols=81 Identities=16% Similarity=0.259 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC--hhhhhhhhHhHhcCCCEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG--QERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G--~~~~~~~~~~~~~~~d~vi~ 93 (224)
|-|.++|-|++||||+||.|-.... ....|-.|.+--...+.+-. .+-++|+|| .....+.....++ +++-
T Consensus 308 ISVGfiGYPNvGKSSiINTLR~KkV-CkvAPIpGETKVWQYItLmk---rIfLIDcPGvVyps~dset~ivLk---GvVR 380 (572)
T KOG2423|consen 308 ISVGFIGYPNVGKSSIINTLRKKKV-CKVAPIPGETKVWQYITLMK---RIFLIDCPGVVYPSSDSETDIVLK---GVVR 380 (572)
T ss_pred eeeeeecCCCCchHHHHHHHhhccc-ccccCCCCcchHHHHHHHHh---ceeEecCCCccCCCCCchHHHHhh---ceee
Q ss_pred EEeCCChhhH
Q 027382 94 VYDMTKRQSF 103 (224)
Q Consensus 94 v~d~~~~~s~ 103 (224)
|=++.+|+.+
T Consensus 381 Venv~~pe~y 390 (572)
T KOG2423|consen 381 VENVKNPEDY 390 (572)
T ss_pred eeecCCHHHH
No 469
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.95 E-value=0.00086 Score=46.71 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFS 41 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~ 41 (224)
.++++|++|+||||++..+......
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCC
Confidence 6899999999999999999876543
No 470
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.94 E-value=0.013 Score=46.77 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 027382 17 KVVLIGDSAVGKSQLLARFA 36 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~ 36 (224)
.|+|.|.+||||||+++.|-
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 68999999999999999995
No 471
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.93 E-value=0.00073 Score=46.78 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027382 18 VVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (224)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999765
No 472
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.012 Score=49.27 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=23.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
...-+|+|+|+.|+|||||+.-|++.-.
T Consensus 611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl~ 638 (807)
T KOG0066|consen 611 DMDSRIAIVGPNGVGKSTLLKLLIGKLD 638 (807)
T ss_pred cccceeEEECCCCccHHHHHHHHhcCCC
Confidence 3445799999999999999999998554
No 473
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.92 E-value=0.00078 Score=52.04 Aligned_cols=28 Identities=29% Similarity=0.492 Sum_probs=24.1
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCC
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
-+..++++|+|.+|||||+|+..++...
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 3567899999999999999999998643
No 474
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.92 E-value=0.0025 Score=43.99 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
--|++-|+-|+|||||++.+...-
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc
Confidence 448999999999999999987643
No 475
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.91 E-value=0.00087 Score=47.60 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.|+|+|+.|+|||||+..|++.-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998754
No 476
>PRK06217 hypothetical protein; Validated
Probab=96.90 E-value=0.00092 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.+|+|+|.+|||||||..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 477
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.90 E-value=0.00093 Score=49.84 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.|+|+|++|||||||++.|....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999997653
No 478
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.90 E-value=0.0012 Score=48.62 Aligned_cols=25 Identities=40% Similarity=0.458 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFS 41 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~ 41 (224)
.++|+|++|+|||||+|-+.+-..+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCC
Confidence 5899999999999999999875543
No 479
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.89 E-value=0.0011 Score=50.44 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=22.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
+...-|+|+|++|||||||++.|.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 44466999999999999999999864
No 480
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.88 E-value=0.00096 Score=44.85 Aligned_cols=20 Identities=35% Similarity=0.660 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 027382 17 KVVLIGDSAVGKSQLLARFA 36 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~ 36 (224)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 47999999999999999986
No 481
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.88 E-value=0.00089 Score=49.53 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 482
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.85 E-value=0.0023 Score=51.99 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=61.2
Q ss_pred eCCChh-hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 027382 70 DTAGQE-RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ 148 (224)
Q Consensus 70 D~~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 148 (224)
+.||+. .+.......+..+|+++.|+|+-+|.+...-. +..+.. ..|.++|+||.|+.+.. ...+-.+.|.+
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~--l~~~v~----~k~~i~vlNK~DL~~~~-~~~~W~~~~~~ 88 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPE--LERIVK----EKPKLLVLNKADLAPKE-VTKKWKKYFKK 88 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCcc--HHHHHc----cCCcEEEEehhhcCCHH-HHHHHHHHHHh
Confidence 346754 55667888899999999999999976543211 111222 35559999999997522 22333444455
Q ss_pred HcCCeEEEEcCCCCCCHHHHHH
Q 027382 149 RENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 149 ~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
+.+...+.++++.+.+...+..
T Consensus 89 ~~~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 89 EEGIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred cCCCccEEEEeecccCccchHH
Confidence 5566678888887776665554
No 483
>PRK03839 putative kinase; Provisional
Probab=96.85 E-value=0.001 Score=49.30 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
+|+++|.+||||||+.++|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 484
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.0013 Score=53.33 Aligned_cols=23 Identities=52% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
++++|++|||||||++.+.+-..
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999988543
No 485
>PRK14530 adenylate kinase; Provisional
Probab=96.82 E-value=0.0012 Score=50.54 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
+|+|+|+|||||||+.+.|..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 486
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.00092 Score=47.31 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.0
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
.+...||+|.|.||+|||||..++..
T Consensus 4 ~r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 4 ERERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence 36678999999999999999999974
No 487
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.80 E-value=0.0012 Score=49.22 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.-.++++|++|+|||||++.+++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468999999999999999998654
No 488
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.80 E-value=0.0013 Score=48.62 Aligned_cols=22 Identities=36% Similarity=0.321 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
-.++|+|+.|+|||||++.++.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4589999999999999998863
No 489
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.79 E-value=0.0012 Score=48.84 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
-|+|+|++|||||||++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47999999999999999998743
No 490
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.78 E-value=0.0011 Score=49.88 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (224)
|+|.|++|||||||.+.|.+.-
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999997643
No 491
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.78 E-value=0.0077 Score=43.88 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
.++++|+.|+|||||++.+.+...
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987643
No 492
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.77 E-value=0.011 Score=46.58 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
-|+|.|++|+||||+++.++..-
T Consensus 82 lilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhh
Confidence 48999999999999999998654
No 493
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.77 E-value=0.0012 Score=51.49 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027382 18 VVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (224)
++++|+.|||||||++.+.+-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999873
No 494
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.76 E-value=0.0012 Score=49.02 Aligned_cols=21 Identities=14% Similarity=0.396 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
.|+++|.+||||||+++.|..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999973
No 495
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.76 E-value=0.0014 Score=49.86 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=22.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
....|+|.|++|||||||.+.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998864
No 496
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.75 E-value=0.0092 Score=43.94 Aligned_cols=42 Identities=19% Similarity=0.082 Sum_probs=27.6
Q ss_pred CEEEEEEeCCChhhH--HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 89 VGAMLVYDMTKRQSF--DHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 89 d~vi~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
|++++|+|+.++.+- ..+.+.+. +. ..+.|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~-l~---~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVL-QA---GGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHH-hc---cCCCCEEEEEehhhcCC
Confidence 789999999885332 22222221 21 22589999999999953
No 497
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.74 E-value=0.009 Score=46.17 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
..-++++.|+.|+||||+++++++.
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999863
No 498
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.74 E-value=0.0095 Score=48.79 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=22.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
...+|+|.|++|||||||++.|++.-
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHccc
Confidence 35679999999999999999998754
No 499
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.73 E-value=0.0015 Score=46.17 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
No 500
>PRK13949 shikimate kinase; Provisional
Probab=96.72 E-value=0.0015 Score=47.95 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
+|+|+|++|||||||.+.|...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988753
Done!