Query 027382
Match_columns 224
No_of_seqs 151 out of 1829
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 15:03:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 9.5E-43 3.3E-47 265.1 19.1 170 12-181 10-179 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 6.1E-37 2.1E-41 231.7 23.9 173 11-183 4-176 (206)
3 3cpj_B GTP-binding protein YPT 100.0 3.5E-37 1.2E-41 236.0 19.0 179 8-186 6-184 (223)
4 2bov_A RAla, RAS-related prote 100.0 2E-35 6.8E-40 223.1 22.7 169 11-180 10-179 (206)
5 1vg8_A RAS-related protein RAB 100.0 2E-35 6.9E-40 223.3 19.4 171 11-182 4-179 (207)
6 2bme_A RAB4A, RAS-related prot 100.0 1.1E-34 3.8E-39 215.6 22.6 179 7-185 2-180 (186)
7 3tkl_A RAS-related protein RAB 100.0 2.4E-34 8.3E-39 215.5 24.6 176 8-183 9-184 (196)
8 2fu5_C RAS-related protein RAB 100.0 3.2E-35 1.1E-39 218.1 19.3 174 10-183 3-176 (183)
9 2ew1_A RAS-related protein RAB 100.0 1.1E-34 3.6E-39 218.9 21.9 176 6-181 17-192 (201)
10 2a5j_A RAS-related protein RAB 100.0 3E-34 1E-38 214.5 23.4 176 7-182 13-188 (191)
11 2hup_A RAS-related protein RAB 100.0 2.7E-34 9.1E-39 216.6 21.9 172 9-180 23-195 (201)
12 2o52_A RAS-related protein RAB 100.0 2.7E-34 9.1E-39 216.4 21.7 179 6-184 16-194 (200)
13 3tw8_B RAS-related protein RAB 100.0 4.4E-34 1.5E-38 211.2 22.1 175 8-183 2-176 (181)
14 2oil_A CATX-8, RAS-related pro 100.0 7.7E-34 2.6E-38 212.5 23.1 175 7-181 17-191 (193)
15 1z0f_A RAB14, member RAS oncog 100.0 8.7E-34 3E-38 209.2 22.4 169 10-178 10-178 (179)
16 2gf9_A RAS-related protein RAB 100.0 9.6E-34 3.3E-38 211.4 22.8 172 9-180 16-187 (189)
17 3dz8_A RAS-related protein RAB 100.0 6.8E-35 2.3E-39 218.0 16.5 175 7-181 15-189 (191)
18 1zbd_A Rabphilin-3A; G protein 100.0 1.8E-33 6.1E-38 212.1 24.4 173 11-183 4-176 (203)
19 2efe_B Small GTP-binding prote 100.0 1.9E-33 6.5E-38 208.0 22.9 168 11-178 8-175 (181)
20 1r2q_A RAS-related protein RAB 100.0 1.9E-33 6.6E-38 205.5 21.7 165 12-176 3-167 (170)
21 2il1_A RAB12; G-protein, GDP, 100.0 8.6E-34 2.9E-38 212.3 19.9 172 8-179 19-191 (192)
22 1z0j_A RAB-22, RAS-related pro 100.0 4.1E-33 1.4E-37 203.9 23.0 165 12-176 3-167 (170)
23 1z08_A RAS-related protein RAB 100.0 6.6E-34 2.3E-38 208.3 18.5 166 12-177 3-168 (170)
24 3bc1_A RAS-related protein RAB 100.0 3.7E-33 1.3E-37 208.4 22.6 173 11-183 7-190 (195)
25 3kkq_A RAS-related protein M-R 100.0 3.4E-33 1.2E-37 207.1 22.1 170 8-178 11-182 (183)
26 4dsu_A GTPase KRAS, isoform 2B 100.0 5.9E-33 2E-37 206.6 23.3 169 13-183 2-171 (189)
27 2g6b_A RAS-related protein RAB 100.0 4.3E-33 1.5E-37 205.8 22.0 170 10-179 5-175 (180)
28 1g16_A RAS-related protein SEC 100.0 1.8E-33 6.3E-38 205.8 19.7 165 14-179 2-166 (170)
29 2fg5_A RAB-22B, RAS-related pr 100.0 1.5E-33 5.1E-38 210.9 19.6 168 10-177 18-185 (192)
30 2f7s_A C25KG, RAS-related prot 100.0 2.6E-33 9E-38 213.4 20.7 175 9-183 19-204 (217)
31 1ek0_A Protein (GTP-binding pr 100.0 4.5E-33 1.5E-37 203.6 21.1 163 14-176 2-167 (170)
32 2fn4_A P23, RAS-related protei 100.0 4.7E-33 1.6E-37 205.6 21.4 171 9-180 3-174 (181)
33 2gf0_A GTP-binding protein DI- 100.0 9.4E-34 3.2E-38 212.8 17.9 164 12-177 5-170 (199)
34 3t5g_A GTP-binding protein RHE 100.0 3.8E-33 1.3E-37 206.5 20.6 167 12-179 3-170 (181)
35 1z2a_A RAS-related protein RAB 100.0 2.4E-33 8.1E-38 204.8 19.0 166 12-178 2-167 (168)
36 2nzj_A GTP-binding protein REM 100.0 1E-32 3.5E-37 202.8 22.5 168 13-181 2-172 (175)
37 1x3s_A RAS-related protein RAB 100.0 1.5E-32 5E-37 205.5 23.7 171 8-179 8-179 (195)
38 3cph_A RAS-related protein SEC 100.0 1.5E-32 5.2E-37 208.4 23.3 173 11-184 16-188 (213)
39 3cbq_A GTP-binding protein REM 100.0 4.4E-33 1.5E-37 209.0 20.0 170 9-178 17-188 (195)
40 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.9E-32 6.5E-37 201.8 22.9 167 11-178 3-174 (177)
41 2y8e_A RAB-protein 6, GH09086P 100.0 4.5E-33 1.5E-37 205.4 19.4 167 11-177 10-176 (179)
42 2p5s_A RAS and EF-hand domain 100.0 3E-33 1E-37 210.5 17.9 167 11-177 24-196 (199)
43 1z06_A RAS-related protein RAB 100.0 1.5E-32 5.3E-37 204.8 21.2 166 12-177 17-187 (189)
44 3q85_A GTP-binding protein REM 100.0 1.1E-32 3.6E-37 201.7 19.7 164 15-178 2-167 (169)
45 3clv_A RAB5 protein, putative; 100.0 4.4E-32 1.5E-36 204.1 23.5 167 12-181 4-207 (208)
46 2hxs_A RAB-26, RAS-related pro 100.0 4.4E-33 1.5E-37 205.4 17.0 167 12-178 3-173 (178)
47 3c5c_A RAS-like protein 12; GD 100.0 9.1E-33 3.1E-37 205.9 18.3 165 11-177 17-185 (187)
48 1ky3_A GTP-binding protein YPT 100.0 9.3E-33 3.2E-37 204.2 18.3 170 11-180 4-180 (182)
49 3ihw_A Centg3; RAS, centaurin, 100.0 7E-32 2.4E-36 200.7 22.7 163 11-180 16-182 (184)
50 3reg_A RHO-like small GTPase; 100.0 2.7E-32 9.1E-37 204.3 20.5 167 11-179 19-189 (194)
51 3oes_A GTPase rhebl1; small GT 100.0 6.3E-33 2.2E-37 209.0 16.9 168 12-180 21-189 (201)
52 3q3j_B RHO-related GTP-binding 100.0 1E-32 3.4E-37 210.0 18.0 170 9-180 21-205 (214)
53 3q72_A GTP-binding protein RAD 100.0 4.5E-32 1.5E-36 197.8 20.5 163 15-179 2-165 (166)
54 2g3y_A GTP-binding protein GEM 100.0 5.2E-32 1.8E-36 205.3 21.3 169 11-179 33-204 (211)
55 1u8z_A RAS-related protein RAL 100.0 4.2E-32 1.4E-36 197.9 19.9 163 14-177 3-166 (168)
56 2a9k_A RAS-related protein RAL 100.0 8.1E-32 2.8E-36 200.0 21.4 169 11-180 14-183 (187)
57 1c1y_A RAS-related protein RAP 100.0 4.4E-32 1.5E-36 197.9 19.5 161 15-176 3-165 (167)
58 2yc2_C IFT27, small RAB-relate 100.0 1.2E-32 3.9E-37 208.1 16.1 170 13-182 18-196 (208)
59 2q3h_A RAS homolog gene family 100.0 8.1E-32 2.8E-36 202.7 20.5 171 9-181 14-198 (201)
60 1kao_A RAP2A; GTP-binding prot 100.0 6.2E-32 2.1E-36 196.8 19.3 163 15-178 3-166 (167)
61 2iwr_A Centaurin gamma 1; ANK 100.0 1.4E-31 4.6E-36 197.6 21.0 163 13-182 5-173 (178)
62 2j0v_A RAC-like GTP-binding pr 100.0 9.5E-33 3.2E-37 209.6 15.1 166 13-180 7-182 (212)
63 2atx_A Small GTP binding prote 100.0 2E-31 6.8E-36 199.5 21.5 165 11-177 14-192 (194)
64 1gwn_A RHO-related GTP-binding 100.0 4.1E-32 1.4E-36 205.3 17.9 172 5-178 18-204 (205)
65 2atv_A RERG, RAS-like estrogen 100.0 1.2E-31 4E-36 201.2 19.9 167 12-180 25-193 (196)
66 1m7b_A RND3/RHOE small GTP-bin 100.0 8.6E-32 3E-36 200.0 17.5 165 12-178 4-183 (184)
67 4djt_A GTP-binding nuclear pro 100.0 8.2E-32 2.8E-36 205.2 17.7 172 11-182 7-179 (218)
68 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.1E-31 7.1E-36 197.7 18.8 163 13-177 3-179 (186)
69 2gco_A H9, RHO-related GTP-bin 100.0 8E-31 2.7E-35 197.5 21.9 165 12-178 22-200 (201)
70 3l0i_B RAS-related protein RAB 100.0 3.1E-34 1.1E-38 215.8 2.9 170 8-177 26-195 (199)
71 2j1l_A RHO-related GTP-binding 100.0 2.3E-31 8E-36 202.4 18.6 166 12-179 31-210 (214)
72 3con_A GTPase NRAS; structural 100.0 2.1E-30 7.1E-35 193.3 22.7 168 12-181 18-186 (190)
73 2erx_A GTP-binding protein DI- 100.0 3.9E-31 1.3E-35 193.6 17.9 162 14-176 2-165 (172)
74 2ce2_X GTPase HRAS; signaling 100.0 1.8E-30 6.3E-35 188.7 21.3 161 15-177 3-164 (166)
75 3t1o_A Gliding protein MGLA; G 100.0 1.5E-31 5.2E-36 200.2 14.9 168 11-182 10-196 (198)
76 2fv8_A H6, RHO-related GTP-bin 100.0 2.5E-30 8.6E-35 195.6 20.7 165 12-178 22-200 (207)
77 2cjw_A GTP-binding protein GEM 100.0 2.8E-30 9.7E-35 193.3 20.7 167 13-180 4-174 (192)
78 2f9l_A RAB11B, member RAS onco 100.0 1.5E-29 5E-34 190.3 23.8 171 13-183 3-173 (199)
79 3gj0_A GTP-binding nuclear pro 100.0 3.4E-31 1.1E-35 202.4 14.5 169 9-180 9-177 (221)
80 4gzl_A RAS-related C3 botulinu 100.0 1.5E-30 5E-35 196.6 16.3 163 12-176 27-203 (204)
81 3bwd_D RAC-like GTP-binding pr 100.0 1.9E-31 6.3E-36 197.4 11.1 163 13-177 6-180 (182)
82 4bas_A ADP-ribosylation factor 100.0 1.5E-30 5.2E-35 195.2 14.1 166 9-180 11-191 (199)
83 1ksh_A ARF-like protein 2; sma 100.0 3.9E-29 1.3E-33 185.7 18.8 160 13-179 16-181 (186)
84 1oix_A RAS-related protein RAB 100.0 1E-28 3.5E-33 184.6 20.9 169 8-176 22-190 (191)
85 1fzq_A ADP-ribosylation factor 100.0 2.2E-29 7.5E-34 186.6 16.8 168 4-178 5-178 (181)
86 2h57_A ADP-ribosylation factor 100.0 5.4E-29 1.8E-33 185.7 18.4 162 11-178 17-187 (190)
87 1zd9_A ADP-ribosylation factor 100.0 3.3E-29 1.1E-33 186.7 17.0 160 12-177 19-184 (188)
88 1m2o_B GTP-binding protein SAR 100.0 5.1E-29 1.7E-33 186.1 17.7 156 13-175 21-189 (190)
89 1r8s_A ADP-ribosylation factor 100.0 3.8E-30 1.3E-34 187.2 11.2 156 16-178 1-162 (164)
90 1f6b_A SAR1; gtpases, N-termin 100.0 3E-29 1E-33 188.5 15.8 156 13-175 23-196 (198)
91 1upt_A ARL1, ADP-ribosylation 100.0 1.3E-29 4.3E-34 185.6 13.1 159 13-178 5-169 (171)
92 1zj6_A ADP-ribosylation factor 100.0 1.6E-28 5.5E-33 182.7 17.9 157 13-176 14-176 (187)
93 2h17_A ADP-ribosylation factor 100.0 4.7E-29 1.6E-33 184.7 14.6 160 9-175 15-180 (181)
94 2zej_A Dardarin, leucine-rich 100.0 7.2E-30 2.5E-34 189.7 9.1 163 15-178 2-178 (184)
95 2b6h_A ADP-ribosylation factor 100.0 1.8E-29 6E-34 188.9 11.2 158 13-177 27-190 (192)
96 1moz_A ARL1, ADP-ribosylation 100.0 6.4E-29 2.2E-33 183.9 13.7 160 13-179 16-181 (183)
97 3th5_A RAS-related C3 botulinu 99.9 2.4E-31 8.4E-36 200.7 0.0 163 12-176 27-203 (204)
98 2wkq_A NPH1-1, RAS-related C3 100.0 6.7E-28 2.3E-32 194.5 19.6 164 12-177 152-329 (332)
99 2x77_A ADP-ribosylation factor 100.0 1.1E-29 3.8E-34 189.2 8.1 159 13-178 20-184 (189)
100 3llu_A RAS-related GTP-binding 100.0 1.2E-28 4.1E-33 184.9 11.8 163 9-176 14-195 (196)
101 2fh5_B SR-beta, signal recogni 99.9 1.1E-27 3.7E-32 181.9 11.9 160 11-175 3-213 (214)
102 2qu8_A Putative nucleolar GTP- 99.9 1.2E-26 4.1E-31 178.0 17.5 170 9-181 23-208 (228)
103 2wji_A Ferrous iron transport 99.9 4E-27 1.4E-31 171.8 13.6 153 15-176 3-163 (165)
104 3c5h_A Glucocorticoid receptor 99.9 1.9E-28 6.5E-33 191.1 3.9 165 10-176 14-253 (255)
105 3r7w_A Gtpase1, GTP-binding pr 99.9 1.9E-26 6.6E-31 184.2 14.9 159 14-176 2-179 (307)
106 2lkc_A Translation initiation 99.9 2.5E-26 8.4E-31 169.1 13.9 159 12-179 5-172 (178)
107 3o47_A ADP-ribosylation factor 99.9 1.8E-26 6.1E-31 186.0 13.3 157 14-177 164-326 (329)
108 1svi_A GTP-binding protein YSX 99.9 3.6E-26 1.2E-30 170.8 12.7 159 11-176 19-193 (195)
109 2cxx_A Probable GTP-binding pr 99.9 2.1E-26 7E-31 171.3 11.1 156 16-180 2-186 (190)
110 3r7w_B Gtpase2, GTP-binding pr 99.9 1.9E-27 6.4E-32 189.1 5.7 156 17-179 1-175 (331)
111 3lvq_E ARF-GAP with SH3 domain 99.9 1.3E-25 4.5E-30 190.6 16.9 159 12-177 319-483 (497)
112 2wjg_A FEOB, ferrous iron tran 99.9 7.9E-26 2.7E-30 168.0 12.4 157 14-179 6-170 (188)
113 2dyk_A GTP-binding protein; GT 99.9 1.7E-25 5.9E-30 161.9 12.6 150 16-176 2-160 (161)
114 2gj8_A MNME, tRNA modification 99.9 5.8E-26 2E-30 166.8 9.3 153 14-176 3-164 (172)
115 3a1s_A Iron(II) transport prot 99.9 3.7E-25 1.3E-29 172.5 14.2 155 13-176 3-165 (258)
116 3iev_A GTP-binding protein ERA 99.9 5.7E-25 1.9E-29 175.8 15.4 163 10-176 5-180 (308)
117 3dpu_A RAB family protein; roc 99.9 5.1E-26 1.8E-30 194.6 8.7 163 12-178 38-208 (535)
118 3b1v_A Ferrous iron uptake tra 99.9 2.2E-25 7.4E-30 174.9 10.2 153 14-176 2-162 (272)
119 3pqc_A Probable GTP-binding pr 99.9 9.5E-25 3.3E-29 162.8 13.2 157 11-177 19-193 (195)
120 3iby_A Ferrous iron transport 99.9 3.8E-25 1.3E-29 172.3 8.8 151 16-175 2-164 (256)
121 4dhe_A Probable GTP-binding pr 99.9 1.5E-24 5E-29 165.5 10.6 164 12-179 26-212 (223)
122 3k53_A Ferrous iron transport 99.9 4.6E-24 1.6E-28 167.7 11.6 155 15-177 3-165 (271)
123 3qq5_A Small GTP-binding prote 99.9 2.6E-24 9E-29 177.8 10.2 189 11-217 30-226 (423)
124 1nrj_B SR-beta, signal recogni 99.9 4.4E-25 1.5E-29 167.9 5.1 144 12-164 9-170 (218)
125 3i8s_A Ferrous iron transport 99.9 1.5E-24 5E-29 170.7 8.0 153 15-176 3-167 (274)
126 2hjg_A GTP-binding protein ENG 99.9 2.2E-23 7.5E-28 174.1 13.3 161 13-179 173-350 (436)
127 2e87_A Hypothetical protein PH 99.9 1.3E-22 4.4E-27 165.3 16.2 163 13-180 165-338 (357)
128 4dcu_A GTP-binding protein ENG 99.9 4.3E-23 1.5E-27 173.2 13.4 163 12-180 192-371 (456)
129 1wf3_A GTP-binding protein; GT 99.9 2.4E-23 8.3E-28 165.6 11.1 155 13-176 5-171 (301)
130 3gee_A MNME, tRNA modification 99.9 3E-23 1E-27 174.1 10.4 158 13-177 231-397 (476)
131 3lxx_A GTPase IMAP family memb 99.9 9.1E-22 3.1E-26 151.8 14.5 162 11-176 25-212 (239)
132 1lnz_A SPO0B-associated GTP-bi 99.9 1.7E-22 5.8E-27 163.0 10.2 157 16-177 159-329 (342)
133 3sjy_A Translation initiation 99.9 1.8E-21 6E-26 161.1 16.2 163 11-176 4-190 (403)
134 1s0u_A EIF-2-gamma, translatio 99.9 5.3E-21 1.8E-25 158.4 18.6 163 12-176 5-196 (408)
135 3cb4_D GTP-binding protein LEP 99.9 9.4E-22 3.2E-26 168.8 14.3 157 14-176 3-180 (599)
136 1cip_A Protein (guanine nucleo 99.9 1.8E-22 6.1E-27 163.4 8.5 119 62-180 191-346 (353)
137 1xzp_A Probable tRNA modificat 99.9 9.3E-22 3.2E-26 165.2 12.6 154 14-178 242-405 (482)
138 1wb1_A Translation elongation 99.9 2.1E-21 7.1E-26 163.7 14.3 162 10-177 14-188 (482)
139 2ywe_A GTP-binding protein LEP 99.9 5.2E-21 1.8E-25 164.0 16.9 159 12-176 3-182 (600)
140 3lxw_A GTPase IMAP family memb 99.9 1.6E-21 5.4E-26 151.2 12.2 168 11-178 17-208 (247)
141 1mky_A Probable GTP-binding pr 99.9 1E-21 3.4E-26 164.2 11.9 151 16-178 2-166 (439)
142 2hjg_A GTP-binding protein ENG 99.9 7.8E-23 2.7E-27 170.8 5.1 152 16-177 4-164 (436)
143 1kk1_A EIF2gamma; initiation o 99.9 3.3E-21 1.1E-25 159.8 14.5 165 10-176 5-198 (410)
144 2xtp_A GTPase IMAP family memb 99.9 9.5E-22 3.3E-26 153.5 9.8 164 11-178 18-208 (260)
145 3p26_A Elongation factor 1 alp 99.9 1.3E-21 4.3E-26 165.4 10.8 155 12-168 30-228 (483)
146 3j2k_7 ERF3, eukaryotic polype 99.9 7.5E-21 2.6E-25 158.7 15.1 157 11-170 13-217 (439)
147 2qtf_A Protein HFLX, GTP-bindi 99.9 1.6E-20 5.5E-25 152.8 16.0 161 15-178 178-354 (364)
148 3ohm_A Guanine nucleotide-bind 99.9 6.5E-22 2.2E-26 158.0 7.6 119 62-180 165-320 (327)
149 1ega_A Protein (GTP-binding pr 99.9 2.6E-21 9E-26 154.0 11.0 156 14-176 7-173 (301)
150 3t5d_A Septin-7; GTP-binding p 99.9 1.1E-21 3.7E-26 154.4 7.9 160 12-175 5-201 (274)
151 3geh_A MNME, tRNA modification 99.8 1.5E-21 5.1E-26 163.3 8.4 153 13-177 222-383 (462)
152 3tr5_A RF-3, peptide chain rel 99.8 2.6E-21 9E-26 164.3 9.0 121 10-134 8-148 (528)
153 1zun_B Sulfate adenylate trans 99.8 7.5E-21 2.6E-25 158.7 11.4 157 12-171 21-217 (434)
154 1zcb_A G alpha I/13; GTP-bindi 99.8 1.9E-21 6.6E-26 157.9 7.5 120 62-181 199-356 (362)
155 1mky_A Probable GTP-binding pr 99.8 9E-21 3.1E-25 158.4 11.7 161 13-179 178-356 (439)
156 2xtz_A Guanine nucleotide-bind 99.8 6.3E-21 2.2E-25 154.3 10.2 120 62-181 181-348 (354)
157 3izy_P Translation initiation 99.8 5.2E-23 1.8E-27 174.3 -2.7 159 13-176 2-166 (537)
158 4fid_A G protein alpha subunit 99.8 5.1E-21 1.8E-25 153.4 9.0 120 59-178 156-328 (340)
159 2elf_A Protein translation elo 99.8 6.1E-21 2.1E-25 155.7 9.5 147 17-179 23-181 (370)
160 2qag_A Septin-2, protein NEDD5 99.8 4.4E-22 1.5E-26 162.1 2.7 166 12-183 34-238 (361)
161 2ged_A SR-beta, signal recogni 99.8 7.2E-21 2.5E-25 141.7 9.1 117 12-137 45-173 (193)
162 4dcu_A GTP-binding protein ENG 99.8 1.2E-21 4E-26 164.6 5.0 153 14-176 22-183 (456)
163 1d2e_A Elongation factor TU (E 99.8 9.1E-21 3.1E-25 156.5 10.1 158 14-175 2-192 (397)
164 1azs_C GS-alpha; complex (lyas 99.8 1E-20 3.5E-25 154.8 9.9 119 63-181 216-388 (402)
165 2c78_A Elongation factor TU-A; 99.8 2.6E-21 8.9E-26 160.2 6.3 150 11-164 7-180 (405)
166 1jny_A EF-1-alpha, elongation 99.8 5.3E-21 1.8E-25 159.6 7.4 154 13-170 4-205 (435)
167 1g7s_A Translation initiation 99.8 9.1E-20 3.1E-24 156.6 13.3 159 14-179 4-219 (594)
168 3izq_1 HBS1P, elongation facto 99.8 5.4E-21 1.9E-25 165.0 4.9 155 12-168 164-362 (611)
169 1r5b_A Eukaryotic peptide chai 99.8 4.6E-21 1.6E-25 161.1 2.4 154 13-169 41-243 (467)
170 2aka_B Dynamin-1; fusion prote 99.8 3.1E-20 1.1E-24 147.6 6.2 162 12-176 23-251 (299)
171 3avx_A Elongation factor TS, e 99.8 1.1E-19 3.9E-24 163.2 10.0 160 11-174 292-482 (1289)
172 1f60_A Elongation factor EEF1A 99.8 1.3E-19 4.6E-24 151.9 9.7 154 12-168 4-202 (458)
173 2dy1_A Elongation factor G; tr 99.8 7.8E-19 2.7E-23 153.2 14.0 118 12-133 6-139 (665)
174 1zo1_I IF2, translation initia 99.8 2.6E-21 9E-26 162.6 -1.7 156 13-174 2-163 (501)
175 1pui_A ENGB, probable GTP-bind 99.8 5.2E-19 1.8E-23 133.4 10.2 156 12-176 23-197 (210)
176 3def_A T7I23.11 protein; chlor 99.8 1.5E-19 5.2E-24 141.2 7.2 127 13-141 34-172 (262)
177 1dar_A EF-G, elongation factor 99.8 2.1E-18 7.2E-23 151.0 12.8 123 8-134 5-143 (691)
178 2h5e_A Peptide chain release f 99.8 2.1E-18 7.3E-23 146.6 11.6 122 9-134 7-148 (529)
179 3mca_A HBS1, elongation factor 99.8 7.5E-20 2.6E-24 157.5 1.5 152 12-166 174-371 (592)
180 1h65_A Chloroplast outer envel 99.8 7.4E-19 2.5E-23 137.9 6.5 126 13-140 37-174 (270)
181 2qnr_A Septin-2, protein NEDD5 99.8 3.9E-19 1.3E-23 141.4 4.4 164 12-181 15-217 (301)
182 3t34_A Dynamin-related protein 99.8 1.3E-18 4.6E-23 141.8 7.6 158 14-173 33-256 (360)
183 2j69_A Bacterial dynamin-like 99.7 1.2E-17 4.1E-22 146.3 13.6 164 12-178 66-325 (695)
184 1jwy_B Dynamin A GTPase domain 99.7 9.7E-18 3.3E-22 134.2 12.0 163 12-177 21-261 (315)
185 1udx_A The GTP-binding protein 99.7 1.4E-17 4.9E-22 137.3 12.8 158 17-178 159-325 (416)
186 2rdo_7 EF-G, elongation factor 99.7 7.7E-17 2.6E-21 141.4 17.4 120 11-134 6-148 (704)
187 2xex_A Elongation factor G; GT 99.7 3.1E-17 1.1E-21 143.7 12.4 120 11-134 6-141 (693)
188 2qag_C Septin-7; cell cycle, c 99.7 1.7E-17 5.7E-22 137.0 7.4 159 12-175 28-224 (418)
189 1u0l_A Probable GTPase ENGC; p 99.7 3.7E-18 1.3E-22 135.8 3.2 134 30-174 32-169 (301)
190 1wxq_A GTP-binding protein; st 99.7 1.1E-17 3.6E-22 137.6 5.4 85 16-100 1-114 (397)
191 3vqt_A RF-3, peptide chain rel 99.7 1.4E-16 4.7E-21 136.1 10.9 123 8-134 24-166 (548)
192 2wsm_A Hydrogenase expression/ 99.6 8.6E-17 2.9E-21 122.2 4.5 155 13-178 28-214 (221)
193 1jal_A YCHF protein; nucleotid 99.6 7.8E-15 2.7E-19 118.6 15.4 144 16-161 3-240 (363)
194 2x2e_A Dynamin-1; nitration, h 99.6 1.2E-16 4.1E-21 129.9 4.6 159 13-174 29-254 (353)
195 1n0u_A EF-2, elongation factor 99.6 3.4E-16 1.2E-20 139.8 7.8 123 7-133 11-163 (842)
196 2hf9_A Probable hydrogenase ni 99.6 1.2E-17 3.9E-22 127.5 -3.8 155 13-178 36-224 (226)
197 3p32_A Probable GTPase RV1496/ 99.6 2E-16 6.7E-21 128.7 2.9 104 63-178 171-284 (355)
198 3j25_A Tetracycline resistance 99.6 5E-16 1.7E-20 135.0 4.8 115 16-134 3-133 (638)
199 2qpt_A EH domain-containing pr 99.6 2.9E-15 1E-19 128.0 8.8 117 12-134 62-232 (550)
200 2dby_A GTP-binding protein; GD 99.6 1.6E-14 5.6E-19 117.3 10.0 151 16-168 2-252 (368)
201 4fn5_A EF-G 1, elongation fact 99.5 2.8E-14 9.7E-19 125.5 11.8 119 11-133 9-150 (709)
202 2www_A Methylmalonic aciduria 99.5 2.8E-15 9.6E-20 121.5 4.8 104 63-178 166-279 (349)
203 4a9a_A Ribosome-interacting GT 99.5 5.2E-13 1.8E-17 108.5 15.3 155 12-169 69-239 (376)
204 1yrb_A ATP(GTP)binding protein 99.5 1.2E-13 4.2E-18 107.4 9.3 108 64-176 109-255 (262)
205 2p67_A LAO/AO transport system 99.5 1.6E-14 5.5E-19 116.8 3.7 104 63-177 148-260 (341)
206 3zvr_A Dynamin-1; hydrolase, D 99.4 4E-13 1.4E-17 117.7 11.0 159 12-175 48-275 (772)
207 2qm8_A GTPase/ATPase; G protei 99.4 4.5E-13 1.5E-17 108.0 6.0 104 63-177 147-260 (337)
208 2yv5_A YJEQ protein; hydrolase 99.4 7.2E-13 2.5E-17 105.3 6.8 97 74-173 66-164 (302)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 3.1E-11 1.1E-15 98.6 15.0 89 11-99 16-127 (392)
210 3l82_B F-box only protein 4; T 99.3 1.4E-12 4.9E-17 96.5 5.8 103 71-176 109-221 (227)
211 2ohf_A Protein OLA1, GTP-bindi 99.3 3.5E-12 1.2E-16 104.1 6.5 91 11-101 18-130 (396)
212 3l2o_B F-box only protein 4; s 99.2 2.5E-11 8.4E-16 94.2 7.1 104 71-176 194-306 (312)
213 3h2y_A GTPase family protein; 99.0 3E-09 1E-13 86.6 10.0 96 73-175 55-157 (368)
214 3ec1_A YQEH GTPase; atnos1, at 98.9 7.7E-11 2.6E-15 96.1 0.0 137 16-162 163-315 (369)
215 2j37_W Signal recognition part 98.9 9E-10 3.1E-14 92.8 5.9 152 13-175 99-310 (504)
216 2qag_B Septin-6, protein NEDD5 98.9 1.5E-08 5.1E-13 83.5 10.3 62 13-74 40-105 (427)
217 3h2y_A GTPase family protein; 98.8 1.4E-10 4.9E-15 94.4 -2.2 134 16-158 161-310 (368)
218 3sop_A Neuronal-specific septi 98.8 3.5E-08 1.2E-12 77.0 11.0 137 15-156 2-178 (270)
219 3ec1_A YQEH GTPase; atnos1, at 98.8 1.2E-08 4.2E-13 83.1 7.6 96 73-175 57-159 (369)
220 1puj_A YLQF, conserved hypothe 98.7 1.3E-08 4.4E-13 79.9 6.4 102 68-179 3-107 (282)
221 1tq4_A IIGP1, interferon-induc 98.6 4.4E-07 1.5E-11 74.7 11.9 157 14-176 68-251 (413)
222 1puj_A YLQF, conserved hypothe 98.6 4.4E-08 1.5E-12 76.9 4.9 58 13-74 118-175 (282)
223 3dm5_A SRP54, signal recogniti 98.5 1.6E-07 5.6E-12 77.7 6.4 136 14-159 99-274 (443)
224 3cnl_A YLQF, putative uncharac 98.5 4.9E-08 1.7E-12 75.8 2.9 56 16-75 100-155 (262)
225 2v3c_C SRP54, signal recogniti 98.3 1.9E-06 6.5E-11 71.4 8.9 133 14-157 98-271 (432)
226 3kl4_A SRP54, signal recogniti 98.3 8.3E-07 2.8E-11 73.4 6.1 140 14-165 96-277 (433)
227 1f5n_A Interferon-induced guan 98.3 8.7E-07 3E-11 76.0 6.1 64 12-75 35-102 (592)
228 1j8m_F SRP54, signal recogniti 98.2 2E-06 6.9E-11 67.8 6.5 93 62-167 179-280 (297)
229 3cnl_A YLQF, putative uncharac 98.2 7.3E-07 2.5E-11 69.2 2.9 93 71-174 4-97 (262)
230 3szr_A Interferon-induced GTP- 98.1 6.2E-06 2.1E-10 71.4 8.0 25 17-41 47-71 (608)
231 1t9h_A YLOQ, probable GTPase E 98.0 1.2E-06 4E-11 69.4 1.3 90 78-170 77-169 (307)
232 3e70_C DPA, signal recognition 97.9 2E-05 6.9E-10 63.0 6.5 143 13-167 127-309 (328)
233 1bif_A 6-phosphofructo-2-kinas 97.8 1.4E-06 4.8E-11 73.2 -1.4 102 13-116 37-148 (469)
234 3q5d_A Atlastin-1; G protein, 97.7 0.00036 1.2E-08 57.9 11.4 27 12-38 64-90 (447)
235 2rcn_A Probable GTPase ENGC; Y 97.7 7.2E-05 2.4E-09 60.3 6.8 82 84-171 127-212 (358)
236 2xxa_A Signal recognition part 97.6 0.00011 3.9E-09 60.8 6.3 80 63-153 183-269 (433)
237 3cwq_A Para family chromosome 97.5 0.0009 3.1E-08 49.8 9.4 86 63-155 67-153 (209)
238 1ye8_A Protein THEP1, hypothet 97.4 9.1E-05 3.1E-09 53.8 3.1 23 17-39 2-24 (178)
239 2rcn_A Probable GTPase ENGC; Y 97.3 0.00019 6.5E-09 57.9 4.3 24 17-40 217-240 (358)
240 1kgd_A CASK, peripheral plasma 97.3 0.00014 4.9E-09 52.7 3.0 22 17-38 7-28 (180)
241 1t9h_A YLOQ, probable GTPase E 97.3 5.6E-05 1.9E-09 59.8 0.8 24 17-40 175-198 (307)
242 1lvg_A Guanylate kinase, GMP k 97.2 0.00018 6E-09 53.2 3.0 21 17-37 6-26 (198)
243 1ex7_A Guanylate kinase; subst 97.1 5.4E-05 1.9E-09 55.4 -0.6 21 18-38 4-24 (186)
244 3a00_A Guanylate kinase, GMP k 97.1 0.00025 8.5E-09 51.7 2.9 22 18-39 4-25 (186)
245 2yv5_A YJEQ protein; hydrolase 97.1 0.00094 3.2E-08 52.7 6.4 23 17-40 167-189 (302)
246 3tr0_A Guanylate kinase, GMP k 97.1 0.00025 8.7E-09 52.3 3.0 22 17-38 9-30 (205)
247 1zp6_A Hypothetical protein AT 97.1 0.00028 9.4E-09 51.5 3.0 23 16-38 10-32 (191)
248 1znw_A Guanylate kinase, GMP k 97.1 0.00028 9.5E-09 52.4 3.0 23 17-39 22-44 (207)
249 1knq_A Gluconate kinase; ALFA/ 97.1 0.00034 1.1E-08 50.3 3.3 23 15-37 8-30 (175)
250 1s96_A Guanylate kinase, GMP k 97.1 0.0003 1E-08 52.9 3.0 23 17-39 18-40 (219)
251 4gp7_A Metallophosphoesterase; 97.1 0.00028 9.6E-09 50.8 2.7 20 17-36 11-30 (171)
252 1z6g_A Guanylate kinase; struc 97.0 0.00032 1.1E-08 52.6 3.0 23 17-39 25-47 (218)
253 2ffh_A Protein (FFH); SRP54, s 97.0 0.00088 3E-08 55.3 5.8 86 63-158 180-271 (425)
254 2bbw_A Adenylate kinase 4, AK4 97.0 0.00037 1.3E-08 53.1 3.3 22 15-36 27-48 (246)
255 3ney_A 55 kDa erythrocyte memb 97.0 0.00037 1.3E-08 51.4 3.0 23 16-38 20-42 (197)
256 4eun_A Thermoresistant glucoki 97.0 0.0004 1.4E-08 51.2 3.0 23 15-37 29-51 (200)
257 3c8u_A Fructokinase; YP_612366 96.9 0.00042 1.4E-08 51.5 2.9 27 12-38 19-45 (208)
258 3tif_A Uncharacterized ABC tra 96.9 0.00044 1.5E-08 52.5 3.0 22 18-39 34-55 (235)
259 1htw_A HI0065; nucleotide-bind 96.9 0.00047 1.6E-08 49.0 3.0 23 17-39 35-57 (158)
260 3tau_A Guanylate kinase, GMP k 96.9 0.00046 1.6E-08 51.3 3.0 23 17-39 10-32 (208)
261 2pcj_A ABC transporter, lipopr 96.9 0.00051 1.7E-08 51.8 2.9 22 18-39 33-54 (224)
262 1kag_A SKI, shikimate kinase I 96.9 0.00057 2E-08 48.9 3.0 22 17-38 6-27 (173)
263 3asz_A Uridine kinase; cytidin 96.9 0.00059 2E-08 50.6 3.1 25 14-38 5-29 (211)
264 2onk_A Molybdate/tungstate ABC 96.9 0.00062 2.1E-08 51.8 3.2 23 17-39 26-48 (240)
265 3co5_A Putative two-component 96.8 0.0022 7.7E-08 44.5 5.8 24 15-38 27-50 (143)
266 2j41_A Guanylate kinase; GMP, 96.8 0.00058 2E-08 50.3 2.9 24 16-39 7-30 (207)
267 2qor_A Guanylate kinase; phosp 96.8 0.00064 2.2E-08 50.2 3.1 23 16-38 13-35 (204)
268 2bdt_A BH3686; alpha-beta prot 96.8 0.00063 2.2E-08 49.5 3.0 21 17-37 4-24 (189)
269 1sgw_A Putative ABC transporte 96.8 0.00066 2.3E-08 50.8 3.1 22 18-39 38-59 (214)
270 1b0u_A Histidine permease; ABC 96.8 0.00066 2.3E-08 52.4 3.1 22 18-39 35-56 (262)
271 3lw7_A Adenylate kinase relate 96.8 0.00074 2.5E-08 48.1 3.1 20 16-35 2-21 (179)
272 2cbz_A Multidrug resistance-as 96.8 0.00067 2.3E-08 51.6 3.0 23 17-39 33-55 (237)
273 3gfo_A Cobalt import ATP-bindi 96.8 0.00068 2.3E-08 52.7 3.1 22 18-39 37-58 (275)
274 2i3b_A HCR-ntpase, human cance 96.8 0.00067 2.3E-08 49.7 2.8 22 17-38 3-24 (189)
275 1ly1_A Polynucleotide kinase; 96.8 0.00093 3.2E-08 48.0 3.5 22 16-37 3-24 (181)
276 3kb2_A SPBC2 prophage-derived 96.8 0.00086 2.9E-08 47.8 3.3 22 17-38 3-24 (173)
277 1g6h_A High-affinity branched- 96.8 0.00071 2.4E-08 52.1 3.0 22 18-39 36-57 (257)
278 2pze_A Cystic fibrosis transme 96.8 0.00077 2.6E-08 50.9 3.1 23 17-39 36-58 (229)
279 3lnc_A Guanylate kinase, GMP k 96.8 0.00054 1.8E-08 51.7 2.2 22 17-38 29-51 (231)
280 2ff7_A Alpha-hemolysin translo 96.8 0.00076 2.6E-08 51.6 3.0 23 17-39 37-59 (247)
281 1mv5_A LMRA, multidrug resista 96.8 0.00086 2.9E-08 51.2 3.3 23 17-39 30-52 (243)
282 4g1u_C Hemin import ATP-bindin 96.7 0.0011 3.6E-08 51.4 3.8 23 18-40 40-62 (266)
283 2eyu_A Twitching motility prot 96.7 0.0008 2.7E-08 51.9 3.0 22 17-38 27-48 (261)
284 2olj_A Amino acid ABC transpor 96.7 0.00081 2.8E-08 51.9 3.1 22 18-39 53-74 (263)
285 1ji0_A ABC transporter; ATP bi 96.7 0.00081 2.8E-08 51.2 3.0 22 18-39 35-56 (240)
286 3fb4_A Adenylate kinase; psych 96.7 0.00085 2.9E-08 49.9 3.1 22 16-37 1-22 (216)
287 2d2e_A SUFC protein; ABC-ATPas 96.7 0.00087 3E-08 51.3 3.2 21 18-38 32-52 (250)
288 1vpl_A ABC transporter, ATP-bi 96.7 0.00084 2.9E-08 51.6 3.1 22 18-39 44-65 (256)
289 1np6_A Molybdopterin-guanine d 96.7 0.00089 3E-08 48.4 3.0 23 16-38 7-29 (174)
290 3dl0_A Adenylate kinase; phosp 96.7 0.00093 3.2E-08 49.7 3.2 22 16-37 1-22 (216)
291 3ec2_A DNA replication protein 96.7 0.00079 2.7E-08 48.6 2.7 24 16-39 39-62 (180)
292 2qi9_C Vitamin B12 import ATP- 96.7 0.00087 3E-08 51.4 3.1 23 17-39 28-50 (249)
293 1u0l_A Probable GTPase ENGC; p 96.7 0.00098 3.3E-08 52.5 3.5 25 17-41 171-195 (301)
294 2ghi_A Transport protein; mult 96.7 0.00088 3E-08 51.6 3.0 23 17-39 48-70 (260)
295 2zu0_C Probable ATP-dependent 96.7 0.00096 3.3E-08 51.6 3.2 21 18-38 49-69 (267)
296 2qt1_A Nicotinamide riboside k 96.7 0.0013 4.5E-08 48.6 3.9 28 11-38 17-44 (207)
297 2ixe_A Antigen peptide transpo 96.7 0.00093 3.2E-08 51.8 3.0 23 17-39 47-69 (271)
298 2v9p_A Replication protein E1; 96.7 0.00099 3.4E-08 52.5 3.1 22 17-38 128-149 (305)
299 2ihy_A ABC transporter, ATP-bi 96.7 0.00098 3.4E-08 51.9 3.1 22 18-39 50-71 (279)
300 2if2_A Dephospho-COA kinase; a 96.7 0.00099 3.4E-08 49.1 2.9 22 16-37 2-23 (204)
301 3b85_A Phosphate starvation-in 96.7 0.00067 2.3E-08 50.5 2.0 22 17-38 24-45 (208)
302 2nq2_C Hypothetical ABC transp 96.6 0.001 3.4E-08 51.1 3.0 22 18-39 34-55 (253)
303 2cdn_A Adenylate kinase; phosp 96.6 0.0012 4.1E-08 48.6 3.3 26 12-37 17-42 (201)
304 1jjv_A Dephospho-COA kinase; P 96.6 0.0013 4.6E-08 48.5 3.6 22 16-37 3-24 (206)
305 4ido_A Atlastin-1; GTPase, GTP 96.6 0.031 1.1E-06 46.4 11.9 63 12-74 64-150 (457)
306 2yz2_A Putative ABC transporte 96.6 0.001 3.6E-08 51.4 3.0 23 17-39 35-57 (266)
307 2chg_A Replication factor C sm 96.6 0.0051 1.7E-07 45.3 6.8 21 18-38 41-61 (226)
308 3t61_A Gluconokinase; PSI-biol 96.6 0.0011 3.7E-08 48.8 2.9 23 16-38 19-41 (202)
309 3vaa_A Shikimate kinase, SK; s 96.6 0.0013 4.5E-08 48.3 3.4 22 16-37 26-47 (199)
310 2jaq_A Deoxyguanosine kinase; 96.6 0.0012 4.3E-08 48.3 3.3 21 17-37 2-22 (205)
311 1uf9_A TT1252 protein; P-loop, 96.6 0.0013 4.5E-08 48.2 3.4 27 12-38 5-31 (203)
312 1cke_A CK, MSSA, protein (cyti 96.6 0.0012 4.1E-08 49.4 3.1 22 16-37 6-27 (227)
313 3sr0_A Adenylate kinase; phosp 96.6 0.0013 4.4E-08 48.9 3.2 22 16-37 1-22 (206)
314 3uie_A Adenylyl-sulfate kinase 96.6 0.0012 4E-08 48.7 3.0 25 14-38 24-48 (200)
315 1qhx_A CPT, protein (chloramph 96.6 0.0012 4.2E-08 47.3 3.0 22 17-38 5-26 (178)
316 1nks_A Adenylate kinase; therm 96.6 0.0014 4.9E-08 47.5 3.4 21 17-37 3-23 (194)
317 3cm0_A Adenylate kinase; ATP-b 96.6 0.0017 5.8E-08 46.9 3.8 23 15-37 4-26 (186)
318 3aez_A Pantothenate kinase; tr 96.6 0.0015 5E-08 51.8 3.6 27 12-38 87-113 (312)
319 4a74_A DNA repair and recombin 96.6 0.0011 3.8E-08 49.6 2.8 23 17-39 27-49 (231)
320 2ehv_A Hypothetical protein PH 96.6 0.0013 4.4E-08 49.9 3.2 21 17-37 32-52 (251)
321 2rhm_A Putative kinase; P-loop 96.6 0.0015 5.2E-08 47.5 3.4 23 15-37 5-27 (193)
322 2pjz_A Hypothetical protein ST 96.6 0.0014 4.8E-08 50.6 3.3 23 17-39 32-54 (263)
323 2wwf_A Thymidilate kinase, put 96.6 0.0015 5.2E-08 48.3 3.4 24 14-37 9-32 (212)
324 2vp4_A Deoxynucleoside kinase; 96.6 0.0014 4.9E-08 49.4 3.2 27 12-38 17-43 (230)
325 3tlx_A Adenylate kinase 2; str 96.5 0.0016 5.6E-08 49.5 3.6 25 13-37 27-51 (243)
326 1e4v_A Adenylate kinase; trans 96.5 0.0014 4.9E-08 48.7 3.0 22 16-37 1-22 (214)
327 1kht_A Adenylate kinase; phosp 96.5 0.0016 5.5E-08 47.2 3.3 22 16-37 4-25 (192)
328 2f1r_A Molybdopterin-guanine d 96.5 0.00066 2.3E-08 48.9 1.1 22 17-38 4-25 (171)
329 3tqc_A Pantothenate kinase; bi 96.5 0.0018 6.1E-08 51.5 3.6 26 12-37 89-114 (321)
330 1tev_A UMP-CMP kinase; ploop, 96.5 0.002 6.7E-08 46.8 3.5 23 15-37 3-25 (196)
331 3fvq_A Fe(3+) IONS import ATP- 96.5 0.0014 4.9E-08 52.8 3.0 23 18-40 33-55 (359)
332 3trf_A Shikimate kinase, SK; a 96.5 0.0019 6.4E-08 46.7 3.4 22 16-37 6-27 (185)
333 1aky_A Adenylate kinase; ATP:A 96.5 0.0017 5.9E-08 48.4 3.2 23 15-37 4-26 (220)
334 2jeo_A Uridine-cytidine kinase 96.5 0.0018 6E-08 49.3 3.3 25 13-37 23-47 (245)
335 2bbs_A Cystic fibrosis transme 96.4 0.0015 5.2E-08 51.1 2.8 23 17-39 66-88 (290)
336 3jvv_A Twitching mobility prot 96.4 0.0016 5.3E-08 52.6 2.9 22 17-38 125-146 (356)
337 1z47_A CYSA, putative ABC-tran 96.4 0.0017 5.9E-08 52.3 3.2 23 18-40 44-66 (355)
338 2x8a_A Nuclear valosin-contain 96.4 0.0017 5.7E-08 50.5 3.0 21 18-38 47-67 (274)
339 2pt5_A Shikimate kinase, SK; a 96.4 0.002 6.7E-08 45.8 3.1 21 17-37 2-22 (168)
340 3nh6_A ATP-binding cassette SU 96.4 0.0011 3.8E-08 52.3 2.0 23 17-39 82-104 (306)
341 1xjc_A MOBB protein homolog; s 96.4 0.0019 6.6E-08 46.3 3.0 23 16-38 5-27 (169)
342 2plr_A DTMP kinase, probable t 96.4 0.0024 8.1E-08 47.1 3.6 22 16-37 5-26 (213)
343 3tui_C Methionine import ATP-b 96.4 0.0019 6.4E-08 52.2 3.2 23 18-40 57-79 (366)
344 1y63_A LMAJ004144AAA protein; 96.4 0.0019 6.5E-08 46.9 3.0 24 15-38 10-33 (184)
345 2yyz_A Sugar ABC transporter, 96.4 0.0018 6.3E-08 52.2 3.2 23 18-40 32-54 (359)
346 3rlf_A Maltose/maltodextrin im 96.4 0.0019 6.4E-08 52.5 3.2 23 18-40 32-54 (381)
347 3uc9_A Increased recombination 96.4 0.0032 1.1E-07 47.3 4.2 92 12-109 26-124 (233)
348 2kjq_A DNAA-related protein; s 96.4 0.0011 3.8E-08 46.5 1.7 23 17-39 38-60 (149)
349 1odf_A YGR205W, hypothetical 3 96.4 0.0022 7.5E-08 50.2 3.5 26 12-37 28-53 (290)
350 2it1_A 362AA long hypothetical 96.4 0.0019 6.5E-08 52.2 3.2 23 18-40 32-54 (362)
351 1lw7_A Transcriptional regulat 96.4 0.0019 6.6E-08 52.2 3.3 25 15-39 170-194 (365)
352 1zd8_A GTP:AMP phosphotransfer 96.4 0.0019 6.5E-08 48.5 3.0 23 15-37 7-29 (227)
353 2bwj_A Adenylate kinase 5; pho 96.4 0.00088 3E-08 49.0 1.1 23 15-37 12-34 (199)
354 1ukz_A Uridylate kinase; trans 96.4 0.0024 8.3E-08 46.9 3.5 24 14-37 14-37 (203)
355 1rj9_A FTSY, signal recognitio 96.3 0.0019 6.6E-08 50.9 3.0 23 15-37 102-124 (304)
356 1g29_1 MALK, maltose transport 96.3 0.002 6.9E-08 52.2 3.2 23 18-40 32-54 (372)
357 1sq5_A Pantothenate kinase; P- 96.3 0.0023 7.8E-08 50.6 3.4 26 13-38 78-103 (308)
358 2yvu_A Probable adenylyl-sulfa 96.3 0.0028 9.7E-08 45.9 3.7 25 14-38 12-36 (186)
359 1v43_A Sugar-binding transport 96.3 0.0021 7.1E-08 52.1 3.2 23 18-40 40-62 (372)
360 1via_A Shikimate kinase; struc 96.3 0.0021 7.2E-08 46.1 2.9 21 17-37 6-26 (175)
361 2xb4_A Adenylate kinase; ATP-b 96.3 0.0023 7.9E-08 48.0 3.3 21 17-37 2-22 (223)
362 1rz3_A Hypothetical protein rb 96.3 0.0023 8E-08 47.1 3.2 25 13-37 20-44 (201)
363 1gvn_B Zeta; postsegregational 96.3 0.0021 7.3E-08 50.2 3.1 25 13-37 31-55 (287)
364 1ixz_A ATP-dependent metallopr 96.3 0.0021 7.3E-08 49.0 3.0 21 18-38 52-72 (254)
365 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0019 6.6E-08 51.5 2.8 23 17-39 173-195 (330)
366 2gza_A Type IV secretion syste 96.3 0.0021 7.1E-08 52.0 2.9 23 17-39 177-199 (361)
367 2v54_A DTMP kinase, thymidylat 96.3 0.0025 8.5E-08 46.8 3.1 24 15-38 4-27 (204)
368 3iij_A Coilin-interacting nucl 96.3 0.0024 8.3E-08 46.0 3.0 23 15-37 11-33 (180)
369 1uj2_A Uridine-cytidine kinase 96.3 0.0027 9.1E-08 48.6 3.3 27 11-37 18-44 (252)
370 2ewv_A Twitching motility prot 96.3 0.0024 8.1E-08 51.9 3.1 22 17-38 138-159 (372)
371 3b9q_A Chloroplast SRP recepto 96.3 0.0023 7.9E-08 50.4 3.0 24 14-37 99-122 (302)
372 1sxj_E Activator 1 40 kDa subu 96.2 0.015 5E-07 46.5 7.7 20 18-37 39-58 (354)
373 1zak_A Adenylate kinase; ATP:A 96.2 0.002 7E-08 48.1 2.5 22 16-37 6-27 (222)
374 3be4_A Adenylate kinase; malar 96.2 0.0027 9.2E-08 47.3 3.0 23 15-37 5-27 (217)
375 2pbr_A DTMP kinase, thymidylat 96.2 0.0028 9.6E-08 46.0 3.1 21 17-37 2-22 (195)
376 2z0h_A DTMP kinase, thymidylat 96.2 0.003 1E-07 46.0 3.2 22 17-38 2-23 (197)
377 1jbk_A CLPB protein; beta barr 96.2 0.003 1E-07 45.4 3.2 23 16-38 44-66 (195)
378 1qf9_A UMP/CMP kinase, protein 96.2 0.0036 1.2E-07 45.3 3.6 22 16-37 7-28 (194)
379 3d31_A Sulfate/molybdate ABC t 96.2 0.0017 5.9E-08 52.1 2.0 23 18-40 29-51 (348)
380 1p9r_A General secretion pathw 96.2 0.0026 8.8E-08 52.5 2.9 23 17-39 169-191 (418)
381 3gd7_A Fusion complex of cysti 96.2 0.0027 9.2E-08 51.8 3.0 21 18-38 50-70 (390)
382 1nn5_A Similar to deoxythymidy 96.2 0.0029 1E-07 46.7 3.0 23 15-37 9-31 (215)
383 2c95_A Adenylate kinase 1; tra 96.1 0.0033 1.1E-07 45.7 3.2 23 15-37 9-31 (196)
384 4e22_A Cytidylate kinase; P-lo 96.1 0.0036 1.2E-07 47.9 3.4 21 16-36 28-48 (252)
385 2ze6_A Isopentenyl transferase 96.1 0.0031 1.1E-07 48.3 3.0 21 17-37 3-23 (253)
386 4dzz_A Plasmid partitioning pr 96.1 0.0057 1.9E-07 44.8 4.4 86 63-155 75-162 (206)
387 1e6c_A Shikimate kinase; phosp 96.1 0.0034 1.2E-07 44.7 3.1 21 17-37 4-24 (173)
388 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.0031 1.1E-07 47.1 3.0 22 17-38 25-46 (235)
389 2oap_1 GSPE-2, type II secreti 96.1 0.0029 9.8E-08 53.6 3.0 23 17-39 262-284 (511)
390 1iy2_A ATP-dependent metallopr 96.1 0.0031 1.1E-07 48.9 3.0 22 18-39 76-97 (278)
391 1gtv_A TMK, thymidylate kinase 96.1 0.0012 4.1E-08 48.9 0.6 21 17-37 2-22 (214)
392 3umf_A Adenylate kinase; rossm 96.1 0.0036 1.2E-07 46.8 3.2 21 17-37 31-51 (217)
393 1vht_A Dephospho-COA kinase; s 96.1 0.0039 1.3E-07 46.4 3.4 23 15-37 4-26 (218)
394 1ak2_A Adenylate kinase isoenz 96.1 0.0036 1.2E-07 47.2 3.2 24 14-37 15-38 (233)
395 1in4_A RUVB, holliday junction 96.1 0.0031 1.1E-07 50.3 3.0 22 17-38 53-74 (334)
396 2p5t_B PEZT; postsegregational 96.1 0.0024 8.2E-08 48.9 2.2 27 12-38 29-55 (253)
397 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0043 1.5E-07 47.7 3.5 22 16-37 5-26 (260)
398 1zuh_A Shikimate kinase; alpha 96.0 0.0043 1.5E-07 44.1 3.3 23 15-37 7-29 (168)
399 2vli_A Antibiotic resistance p 96.0 0.0023 7.9E-08 46.1 1.8 23 15-37 5-27 (183)
400 1oxx_K GLCV, glucose, ABC tran 96.0 0.0017 5.9E-08 52.3 1.2 23 18-40 34-56 (353)
401 2pez_A Bifunctional 3'-phospho 96.0 0.0046 1.6E-07 44.4 3.4 23 15-37 5-27 (179)
402 2iyv_A Shikimate kinase, SK; t 96.0 0.0043 1.5E-07 44.8 3.1 21 17-37 4-24 (184)
403 3kta_A Chromosome segregation 96.0 0.0039 1.3E-07 44.9 2.8 21 17-37 28-48 (182)
404 2og2_A Putative signal recogni 96.0 0.0039 1.3E-07 50.3 3.0 24 14-37 156-179 (359)
405 1cr0_A DNA primase/helicase; R 96.0 0.0036 1.2E-07 48.9 2.8 23 17-39 37-59 (296)
406 3r20_A Cytidylate kinase; stru 95.9 0.0044 1.5E-07 46.9 3.1 24 14-37 8-31 (233)
407 2yhs_A FTSY, cell division pro 95.9 0.0041 1.4E-07 52.2 3.0 23 15-37 293-315 (503)
408 2f6r_A COA synthase, bifunctio 95.9 0.0053 1.8E-07 47.8 3.5 25 13-37 73-97 (281)
409 2npi_A Protein CLP1; CLP1-PCF1 95.9 0.0035 1.2E-07 52.3 2.6 23 17-39 140-162 (460)
410 1lv7_A FTSH; alpha/beta domain 95.9 0.0045 1.5E-07 47.3 3.0 23 16-38 46-68 (257)
411 2w58_A DNAI, primosome compone 95.9 0.0051 1.7E-07 45.1 3.2 23 16-38 55-77 (202)
412 2obl_A ESCN; ATPase, hydrolase 95.9 0.0046 1.6E-07 49.7 3.1 23 17-39 73-95 (347)
413 2p65_A Hypothetical protein PF 95.9 0.0037 1.3E-07 44.8 2.3 23 16-38 44-66 (187)
414 2cvh_A DNA repair and recombin 95.9 0.0048 1.6E-07 45.7 3.0 21 17-37 22-42 (220)
415 3bos_A Putative DNA replicatio 95.8 0.0055 1.9E-07 45.9 3.2 24 15-38 52-75 (242)
416 1nij_A Hypothetical protein YJ 95.8 0.0033 1.1E-07 49.9 2.0 23 17-39 6-28 (318)
417 1n0w_A DNA repair protein RAD5 95.8 0.0052 1.8E-07 46.3 3.0 22 17-38 26-47 (243)
418 3nwj_A ATSK2; P loop, shikimat 95.8 0.0046 1.6E-07 47.3 2.7 22 16-37 49-70 (250)
419 1m7g_A Adenylylsulfate kinase; 95.8 0.0052 1.8E-07 45.5 3.0 23 15-37 25-47 (211)
420 4eaq_A DTMP kinase, thymidylat 95.8 0.0074 2.5E-07 45.5 3.8 25 14-38 25-49 (229)
421 3pfi_A Holliday junction ATP-d 95.8 0.021 7.2E-07 45.3 6.7 24 15-38 55-78 (338)
422 2grj_A Dephospho-COA kinase; T 95.8 0.0069 2.4E-07 44.4 3.4 26 13-38 10-35 (192)
423 1q3t_A Cytidylate kinase; nucl 95.7 0.0067 2.3E-07 45.8 3.2 27 11-37 12-38 (236)
424 1yqt_A RNAse L inhibitor; ATP- 95.7 0.0087 3E-07 51.0 4.1 24 17-40 49-72 (538)
425 1f2t_A RAD50 ABC-ATPase; DNA d 95.7 0.0069 2.4E-07 42.4 2.9 19 18-36 26-44 (149)
426 3euj_A Chromosome partition pr 95.7 0.0061 2.1E-07 51.1 3.0 21 17-37 31-51 (483)
427 1svm_A Large T antigen; AAA+ f 95.6 0.0063 2.1E-07 49.4 3.0 22 16-37 170-191 (377)
428 1ltq_A Polynucleotide kinase; 95.6 0.0081 2.8E-07 47.0 3.5 22 16-37 3-24 (301)
429 2dpy_A FLII, flagellum-specifi 95.6 0.0066 2.3E-07 50.4 3.1 23 17-39 159-181 (438)
430 3ozx_A RNAse L inhibitor; ATP 95.6 0.0088 3E-07 50.9 3.7 23 18-40 28-50 (538)
431 3j16_B RLI1P; ribosome recycli 95.5 0.0095 3.2E-07 51.5 3.9 24 17-40 105-128 (608)
432 3gmt_A Adenylate kinase; ssgci 95.5 0.0087 3E-07 45.1 3.3 26 12-37 5-30 (230)
433 3t15_A Ribulose bisphosphate c 95.5 0.0074 2.5E-07 47.2 3.0 26 13-38 34-59 (293)
434 3n70_A Transport activator; si 95.5 0.0085 2.9E-07 41.6 3.0 26 14-39 23-48 (145)
435 3b60_A Lipid A export ATP-bind 95.5 0.0072 2.5E-07 52.0 3.1 23 17-39 371-393 (582)
436 1njg_A DNA polymerase III subu 95.5 0.0078 2.7E-07 44.8 2.9 21 17-37 47-67 (250)
437 3h4m_A Proteasome-activating n 95.5 0.0075 2.6E-07 46.7 2.9 25 14-38 50-74 (285)
438 3ea0_A ATPase, para family; al 95.5 0.073 2.5E-06 39.9 8.4 90 63-160 118-207 (245)
439 3b9p_A CG5977-PA, isoform A; A 95.5 0.0076 2.6E-07 47.0 2.9 24 15-38 54-77 (297)
440 2qz4_A Paraplegin; AAA+, SPG7, 95.4 0.0085 2.9E-07 45.7 3.0 23 15-37 39-61 (262)
441 3b5x_A Lipid A export ATP-bind 95.4 0.011 3.7E-07 50.9 4.0 23 17-39 371-393 (582)
442 1nlf_A Regulatory protein REPA 95.4 0.0079 2.7E-07 46.6 2.8 21 17-37 32-52 (279)
443 1tue_A Replication protein E1; 95.4 0.0065 2.2E-07 44.9 2.1 21 17-37 60-80 (212)
444 3cf0_A Transitional endoplasmi 95.4 0.0088 3E-07 46.9 2.9 24 15-38 49-72 (301)
445 3bk7_A ABC transporter ATP-bin 95.3 0.012 4.3E-07 50.8 4.0 24 17-40 119-142 (607)
446 1l8q_A Chromosomal replication 95.3 0.009 3.1E-07 47.3 2.9 23 16-38 38-60 (324)
447 3u61_B DNA polymerase accessor 95.3 0.15 5E-06 40.1 9.9 21 18-38 51-71 (324)
448 3ozx_A RNAse L inhibitor; ATP 95.3 0.012 4.2E-07 50.1 3.7 23 18-40 297-319 (538)
449 2px0_A Flagellar biosynthesis 95.3 0.0093 3.2E-07 46.8 2.8 134 15-158 105-273 (296)
450 4fcw_A Chaperone protein CLPB; 95.2 0.014 4.8E-07 45.7 3.7 24 15-38 47-70 (311)
451 1yqt_A RNAse L inhibitor; ATP- 95.2 0.015 5.2E-07 49.5 4.1 24 17-40 314-337 (538)
452 3syl_A Protein CBBX; photosynt 95.2 0.012 4E-07 46.1 3.2 25 13-37 65-89 (309)
453 3bk7_A ABC transporter ATP-bin 95.2 0.014 4.8E-07 50.4 3.9 24 17-40 384-407 (607)
454 1vma_A Cell division protein F 95.2 0.011 3.9E-07 46.5 3.0 85 64-159 187-284 (306)
455 3ake_A Cytidylate kinase; CMP 95.2 0.013 4.5E-07 42.9 3.2 21 17-37 4-24 (208)
456 2qmh_A HPR kinase/phosphorylas 95.2 0.012 4.1E-07 43.3 2.9 24 16-39 35-58 (205)
457 2yl4_A ATP-binding cassette SU 95.2 0.0075 2.6E-07 52.1 2.1 23 17-39 372-394 (595)
458 1d2n_A N-ethylmaleimide-sensit 95.1 0.016 5.5E-07 44.6 3.7 26 13-38 62-87 (272)
459 3qf4_B Uncharacterized ABC tra 95.1 0.0084 2.9E-07 51.8 2.3 23 17-39 383-405 (598)
460 4a82_A Cystic fibrosis transme 95.1 0.0073 2.5E-07 51.9 1.9 23 17-39 369-391 (578)
461 3zvl_A Bifunctional polynucleo 95.1 0.012 4E-07 48.6 3.0 25 14-38 257-281 (416)
462 2dr3_A UPF0273 protein PH0284; 95.1 0.012 4.3E-07 44.2 3.0 21 17-37 25-45 (247)
463 2qby_A CDC6 homolog 1, cell di 95.1 0.011 3.9E-07 47.5 2.8 24 15-38 45-68 (386)
464 3qf7_A RAD50; ABC-ATPase, ATPa 95.1 0.013 4.5E-07 47.3 3.2 19 18-36 26-44 (365)
465 3qf4_A ABC transporter, ATP-bi 95.0 0.0093 3.2E-07 51.4 2.3 23 17-39 371-393 (587)
466 3j16_B RLI1P; ribosome recycli 95.0 0.017 5.9E-07 49.9 3.9 24 18-41 381-404 (608)
467 1pzn_A RAD51, DNA repair and r 95.0 0.012 4.3E-07 47.2 2.8 23 17-39 133-155 (349)
468 1fnn_A CDC6P, cell division co 95.0 0.013 4.6E-07 47.2 3.0 23 17-39 46-68 (389)
469 1p5z_B DCK, deoxycytidine kina 95.0 0.01 3.5E-07 45.6 2.2 25 14-38 23-47 (263)
470 1ofh_A ATP-dependent HSL prote 95.0 0.014 4.8E-07 45.5 3.0 24 15-38 50-73 (310)
471 2ocp_A DGK, deoxyguanosine kin 95.0 0.017 5.7E-07 43.7 3.3 23 16-38 3-25 (241)
472 4b4t_K 26S protease regulatory 94.9 0.015 5E-07 48.1 3.0 25 14-38 205-229 (428)
473 1xwi_A SKD1 protein; VPS4B, AA 94.9 0.014 4.9E-07 46.3 2.9 24 15-38 45-68 (322)
474 2ga8_A Hypothetical 39.9 kDa p 94.9 0.018 6.2E-07 46.2 3.5 24 14-37 23-46 (359)
475 1sxj_C Activator 1 40 kDa subu 94.9 0.015 5E-07 46.4 2.9 21 18-38 49-69 (340)
476 1c9k_A COBU, adenosylcobinamid 94.9 0.017 5.8E-07 41.8 2.9 21 18-38 2-22 (180)
477 2qgz_A Helicase loader, putati 94.9 0.017 5.8E-07 45.5 3.2 24 15-38 152-175 (308)
478 3eie_A Vacuolar protein sortin 94.8 0.017 5.8E-07 45.7 3.1 25 14-38 50-74 (322)
479 3foz_A TRNA delta(2)-isopenten 94.8 0.022 7.4E-07 44.9 3.6 24 15-38 10-33 (316)
480 3d3q_A TRNA delta(2)-isopenten 94.8 0.018 6E-07 46.1 3.1 22 16-37 8-29 (340)
481 3crm_A TRNA delta(2)-isopenten 94.8 0.02 6.9E-07 45.4 3.4 22 16-37 6-27 (323)
482 4b4t_L 26S protease subunit RP 94.7 0.018 6E-07 47.7 3.0 25 14-38 214-238 (437)
483 4b4t_M 26S protease regulatory 94.7 0.018 6.2E-07 47.6 3.1 26 13-38 213-238 (434)
484 2r62_A Cell division protease 94.7 0.0082 2.8E-07 46.1 0.9 22 17-38 46-67 (268)
485 3qks_A DNA double-strand break 94.6 0.02 6.8E-07 42.2 2.9 19 18-36 26-44 (203)
486 3tqf_A HPR(Ser) kinase; transf 94.6 0.023 8E-07 40.8 3.1 23 17-39 18-40 (181)
487 2v1u_A Cell division control p 94.6 0.016 5.5E-07 46.6 2.6 25 14-38 43-67 (387)
488 1sxj_D Activator 1 41 kDa subu 94.6 0.019 6.4E-07 45.7 3.0 21 18-38 61-81 (353)
489 3exa_A TRNA delta(2)-isopenten 94.5 0.023 7.8E-07 44.9 3.1 22 17-38 5-26 (322)
490 2z4s_A Chromosomal replication 94.5 0.019 6.6E-07 47.6 2.9 23 16-38 131-153 (440)
491 3a8t_A Adenylate isopentenyltr 94.5 0.024 8.1E-07 45.2 3.3 22 17-38 42-63 (339)
492 4edh_A DTMP kinase, thymidylat 94.5 0.024 8.1E-07 42.2 3.1 23 15-37 6-28 (213)
493 4b4t_J 26S protease regulatory 94.5 0.021 7E-07 46.7 3.0 25 14-38 181-205 (405)
494 2h92_A Cytidylate kinase; ross 94.5 0.02 6.7E-07 42.5 2.6 22 16-37 4-25 (219)
495 2dhr_A FTSH; AAA+ protein, hex 94.5 0.02 6.8E-07 48.3 2.9 21 18-38 67-87 (499)
496 2iw3_A Elongation factor 3A; a 94.5 0.024 8.2E-07 51.5 3.6 24 17-40 463-486 (986)
497 3uk6_A RUVB-like 2; hexameric 94.5 0.02 6.8E-07 46.0 2.8 23 16-38 71-93 (368)
498 2qp9_X Vacuolar protein sortin 94.4 0.022 7.5E-07 45.8 2.9 24 15-38 84-107 (355)
499 2ce7_A Cell division protein F 94.4 0.023 7.7E-07 47.6 3.0 22 17-38 51-72 (476)
500 3m6a_A ATP-dependent protease 94.4 0.021 7.3E-07 48.7 2.9 22 17-38 110-131 (543)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=9.5e-43 Score=265.12 Aligned_cols=170 Identities=37% Similarity=0.683 Sum_probs=146.5
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
+.+.+||+|+|++|||||||+++|..+.+...+.+|++.++..+.+.+++..+.+.+|||+|++.+..++..+++.++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 34568999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT 171 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 171 (224)
++|||++++++++.+..|+..+.+....++|++||+||+|+.+.+.++.+++++++++++++|++|||++|.||+++|..
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998877778999999999999888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 027382 172 VLTEIYRIIS 181 (224)
Q Consensus 172 i~~~i~~~~~ 181 (224)
|++.+.....
T Consensus 170 i~~~i~~~~~ 179 (216)
T 4dkx_A 170 VAAALPGMES 179 (216)
T ss_dssp HHHHC-----
T ss_pred HHHHHHhhhc
Confidence 9988765443
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=6.1e-37 Score=231.74 Aligned_cols=173 Identities=50% Similarity=0.844 Sum_probs=159.1
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
..+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 46788999999999999999999999999888888888888888888888899999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|.
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998877666899999999999987777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 027382 171 TVLTEIYRIISKK 183 (224)
Q Consensus 171 ~i~~~i~~~~~~~ 183 (224)
++.+.+.+.....
T Consensus 164 ~l~~~i~~~~~~~ 176 (206)
T 2bcg_Y 164 TMARQIKESMSQQ 176 (206)
T ss_dssp HHHHHHHHHCCHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999998775544
No 3
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-37 Score=236.01 Aligned_cols=179 Identities=59% Similarity=0.981 Sum_probs=148.0
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382 8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87 (224)
Q Consensus 8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 87 (224)
+....+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.
T Consensus 6 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 85 (223)
T 3cpj_B 6 YGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRG 85 (223)
T ss_dssp ----CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTT
T ss_pred cCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhcc
Confidence 44456788999999999999999999999999888888888888888888888888999999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET 167 (224)
Q Consensus 88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 167 (224)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++..++++++++||+++.|+++
T Consensus 86 ~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (223)
T 3cpj_B 86 AVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDK 165 (223)
T ss_dssp CCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999999998877666899999999999987677888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCC
Q 027382 168 AFLTVLTEIYRIISKKSLT 186 (224)
Q Consensus 168 ~~~~i~~~i~~~~~~~~~~ 186 (224)
+|+++++.+.+........
T Consensus 166 l~~~l~~~i~~~~~~~~~~ 184 (223)
T 3cpj_B 166 AFEELINTIYQKVSKHQMD 184 (223)
T ss_dssp HHHHHHHHHTTCC------
T ss_pred HHHHHHHHHHHHhhhcccC
Confidence 9999999987766555443
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=223.09 Aligned_cols=169 Identities=33% Similarity=0.517 Sum_probs=150.2
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
+....++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 445679999999999999999999999888777777766554 4556678888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 169 (224)
+++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++..++++++++||++|.|++++|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999988877653 579999999999998777788899999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027382 170 LTVLTEIYRII 180 (224)
Q Consensus 170 ~~i~~~i~~~~ 180 (224)
.++++.+.+..
T Consensus 169 ~~l~~~i~~~~ 179 (206)
T 2bov_A 169 FDLMREIRARK 179 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 99999987754
No 5
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=2e-35 Score=223.28 Aligned_cols=171 Identities=40% Similarity=0.676 Sum_probs=150.3
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
..+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 46678999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEcCCCCCCH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-RENLFFMETSALEATNV 165 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v 165 (224)
+|+|||++++.++..+..|+..+..... .+.|+++|+||+|+. .+.+..+++.+++. ..+++++++||++|.|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999887765442 478999999999997 35667888888888 66789999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 027382 166 ETAFLTVLTEIYRIISK 182 (224)
Q Consensus 166 ~~~~~~i~~~i~~~~~~ 182 (224)
+++|++|.+.+.+....
T Consensus 163 ~~l~~~l~~~~~~~~~~ 179 (207)
T 1vg8_A 163 EQAFQTIARNALKQETE 179 (207)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999998876543
No 6
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=1.1e-34 Score=215.62 Aligned_cols=179 Identities=47% Similarity=0.779 Sum_probs=160.8
Q ss_pred CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhc
Q 027382 7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYR 86 (224)
Q Consensus 7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~ 86 (224)
.|.+..+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++
T Consensus 2 ~m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 81 (186)
T 2bme_A 2 HMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR 81 (186)
T ss_dssp --CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTST
T ss_pred CcccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHh
Confidence 45566788999999999999999999999999988888888888888888888888899999999999999999999999
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382 87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 166 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 166 (224)
.+|++|+|||+++++++..+..|+..+......+.|+++|+||+|+.+.+.+...++.+++...+++++++||++|.|++
T Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 82 GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVE 161 (186)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence 99999999999999999999999988887666689999999999997767788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccC
Q 027382 167 TAFLTVLTEIYRIISKKSL 185 (224)
Q Consensus 167 ~~~~~i~~~i~~~~~~~~~ 185 (224)
++|+++.+.+.+.......
T Consensus 162 ~l~~~l~~~~~~~~~~~~~ 180 (186)
T 2bme_A 162 EAFVQCARKILNKIESGEL 180 (186)
T ss_dssp HHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHhhhcCC
Confidence 9999999999887655443
No 7
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=215.48 Aligned_cols=176 Identities=48% Similarity=0.819 Sum_probs=160.3
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382 8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87 (224)
Q Consensus 8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 87 (224)
++...+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 9 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 88 (196)
T 3tkl_A 9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 88 (196)
T ss_dssp --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTT
T ss_pred cCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhh
Confidence 45567789999999999999999999999999888888888888888888899999999999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET 167 (224)
Q Consensus 88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 167 (224)
+|++|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++..++++++++||++|.|+++
T Consensus 89 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 89 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 168 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 99999999999999999999999999887777899999999999988888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 027382 168 AFLTVLTEIYRIISKK 183 (224)
Q Consensus 168 ~~~~i~~~i~~~~~~~ 183 (224)
+|.++.+.+.+.....
T Consensus 169 l~~~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 169 SFMTMAAEIKKRMGPG 184 (196)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999998765543
No 8
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=3.2e-35 Score=218.09 Aligned_cols=174 Identities=45% Similarity=0.817 Sum_probs=129.7
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382 10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAV 89 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 89 (224)
+..+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (183)
T 2fu5_C 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 82 (183)
T ss_dssp CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCC
Confidence 44678999999999999999999999998887777888888888788888888999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382 90 GAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169 (224)
Q Consensus 90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 169 (224)
++|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++.++++++++||++|.|++++|
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 162 (183)
T 2fu5_C 83 GIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162 (183)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999887666689999999999998777788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 027382 170 LTVLTEIYRIISKK 183 (224)
Q Consensus 170 ~~i~~~i~~~~~~~ 183 (224)
.++.+.+.+.....
T Consensus 163 ~~l~~~i~~~~~~~ 176 (183)
T 2fu5_C 163 FTLARDIKAKMDKN 176 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc
Confidence 99999988765543
No 9
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-34 Score=218.86 Aligned_cols=176 Identities=41% Similarity=0.725 Sum_probs=158.0
Q ss_pred cCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHh
Q 027382 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYY 85 (224)
Q Consensus 6 ~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~ 85 (224)
...+++++..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++
T Consensus 17 ~~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~ 96 (201)
T 2ew1_A 17 RGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYY 96 (201)
T ss_dssp -----CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGS
T ss_pred CCCccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHH
Confidence 34455678899999999999999999999999998888888888888888888889999999999999999999999999
Q ss_pred cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382 86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 165 (224)
Q Consensus 86 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 165 (224)
+.+|++|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++...+++++++||++|.|+
T Consensus 97 ~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv 176 (201)
T 2ew1_A 97 RSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNV 176 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999999999988776668999999999999876778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027382 166 ETAFLTVLTEIYRIIS 181 (224)
Q Consensus 166 ~~~~~~i~~~i~~~~~ 181 (224)
+++|.++++.+.+...
T Consensus 177 ~~l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 177 EKLFLDLACRLISEAR 192 (201)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998887653
No 10
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=3e-34 Score=214.51 Aligned_cols=176 Identities=51% Similarity=0.860 Sum_probs=156.1
Q ss_pred CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhc
Q 027382 7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYR 86 (224)
Q Consensus 7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~ 86 (224)
+.+......+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++
T Consensus 13 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 92 (191)
T 2a5j_A 13 GLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR 92 (191)
T ss_dssp CCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhc
Confidence 34456778999999999999999999999999888778888888888888888889999999999999999999999999
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382 87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 166 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 166 (224)
.+|++|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++...+++++++||+++.|++
T Consensus 93 ~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 93 GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVE 172 (191)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999999999999887766689999999999997767788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 027382 167 TAFLTVLTEIYRIISK 182 (224)
Q Consensus 167 ~~~~~i~~~i~~~~~~ 182 (224)
++|++|++.+.+...+
T Consensus 173 ~l~~~l~~~i~~~~~~ 188 (191)
T 2a5j_A 173 EAFINTAKEIYRKIQQ 188 (191)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999876654
No 11
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.7e-34 Score=216.64 Aligned_cols=172 Identities=49% Similarity=0.794 Sum_probs=147.5
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA 88 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 88 (224)
+++.+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 45677899999999999999999999999988777888878888888888888889999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHHH
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVET 167 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~ 167 (224)
|++|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++...++ +++++||++|.|+++
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE 182 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999999998877666899999999999987677888999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027382 168 AFLTVLTEIYRII 180 (224)
Q Consensus 168 ~~~~i~~~i~~~~ 180 (224)
+|.+|++.+.+..
T Consensus 183 l~~~l~~~i~~~~ 195 (201)
T 2hup_A 183 AFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887654
No 12
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.7e-34 Score=216.44 Aligned_cols=179 Identities=48% Similarity=0.761 Sum_probs=148.6
Q ss_pred cCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHh
Q 027382 6 GDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYY 85 (224)
Q Consensus 6 ~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~ 85 (224)
+...+..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++
T Consensus 16 ~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~ 95 (200)
T 2o52_A 16 PRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYY 95 (200)
T ss_dssp ------CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHH
T ss_pred cccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHh
Confidence 34555678899999999999999999999999988888888888888888888888899999999999999999999999
Q ss_pred cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382 86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 165 (224)
Q Consensus 86 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 165 (224)
+.+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+...++.++++..+++++++||++|.|+
T Consensus 96 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi 175 (200)
T 2o52_A 96 RGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENV 175 (200)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTH
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999999999888766668999999999999776778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 027382 166 ETAFLTVLTEIYRIISKKS 184 (224)
Q Consensus 166 ~~~~~~i~~~i~~~~~~~~ 184 (224)
+++|.++++.+.+......
T Consensus 176 ~~l~~~l~~~i~~~~~~~~ 194 (200)
T 2o52_A 176 EEAFLKCARTILNKIDSGE 194 (200)
T ss_dssp HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999987765543
No 13
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.4e-34 Score=211.18 Aligned_cols=175 Identities=45% Similarity=0.723 Sum_probs=155.3
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382 8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87 (224)
Q Consensus 8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 87 (224)
|.+..+..+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 45567899999999999999999999999998888888888888888888888999999999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET 167 (224)
Q Consensus 88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 167 (224)
+|++++|||+++++++..+..|+..+..... +.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|+++
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE 160 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 9999999999999999999999998877553 799999999999987777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 027382 168 AFLTVLTEIYRIISKK 183 (224)
Q Consensus 168 ~~~~i~~~i~~~~~~~ 183 (224)
+|+++.+.+.+.....
T Consensus 161 l~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 161 MFNCITELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999988776544
No 14
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.7e-34 Score=212.51 Aligned_cols=175 Identities=61% Similarity=0.969 Sum_probs=158.1
Q ss_pred CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhc
Q 027382 7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYR 86 (224)
Q Consensus 7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~ 86 (224)
...++++..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++
T Consensus 17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 96 (193)
T 2oil_A 17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR 96 (193)
T ss_dssp ---CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc
Confidence 34456778999999999999999999999999988888888888888888888889999999999999999999999999
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382 87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 166 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 166 (224)
.+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++
T Consensus 97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 97 GAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999999999999887766689999999999997767778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 027382 167 TAFLTVLTEIYRIIS 181 (224)
Q Consensus 167 ~~~~~i~~~i~~~~~ 181 (224)
++|.+|++.+.+...
T Consensus 177 ~l~~~l~~~i~~~~~ 191 (193)
T 2oil_A 177 LAFETVLKEIFAKVS 191 (193)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999877654
No 15
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=8.7e-34 Score=209.22 Aligned_cols=169 Identities=49% Similarity=0.866 Sum_probs=154.2
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382 10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAV 89 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 89 (224)
...+..++|+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 34678899999999999999999999999988778888888888888888889999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382 90 GAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169 (224)
Q Consensus 90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 169 (224)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++.++++++++||++|.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998887766689999999999997767788899999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027382 170 LTVLTEIYR 178 (224)
Q Consensus 170 ~~i~~~i~~ 178 (224)
+++++.+.+
T Consensus 170 ~~l~~~i~~ 178 (179)
T 1z0f_A 170 LEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhh
Confidence 999987743
No 16
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=9.6e-34 Score=211.38 Aligned_cols=172 Identities=41% Similarity=0.748 Sum_probs=156.7
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA 88 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 88 (224)
....+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+
T Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 95 (189)
T 2gf9_A 16 PRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGA 95 (189)
T ss_dssp CTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTC
T ss_pred CcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCC
Confidence 34566889999999999999999999999998878888888888888888888899999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA 168 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 168 (224)
|++|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++..+++++++||++|.|++++
T Consensus 96 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 175 (189)
T 2gf9_A 96 MGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQV 175 (189)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 99999999999999999999999888776568999999999999876778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 169 FLTVLTEIYRII 180 (224)
Q Consensus 169 ~~~i~~~i~~~~ 180 (224)
|+++.+.+.+..
T Consensus 176 ~~~l~~~i~~~~ 187 (189)
T 2gf9_A 176 FERLVDVICEKM 187 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 17
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.8e-35 Score=218.03 Aligned_cols=175 Identities=42% Similarity=0.746 Sum_probs=160.4
Q ss_pred CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhc
Q 027382 7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYR 86 (224)
Q Consensus 7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~ 86 (224)
..+++++..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++
T Consensus 15 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 94 (191)
T 3dz8_A 15 YFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYR 94 (191)
T ss_dssp EETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHT
T ss_pred ccccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHc
Confidence 34667889999999999999999999999999888888888888888888888888899999999999999999999999
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382 87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 166 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 166 (224)
.+|++|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++..++++++++||++|.|++
T Consensus 95 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 95 GAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVR 174 (191)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 99999999999999999999999999988766789999999999998777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 027382 167 TAFLTVLTEIYRIIS 181 (224)
Q Consensus 167 ~~~~~i~~~i~~~~~ 181 (224)
++|+++++.+.+...
T Consensus 175 ~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 175 QAFERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999998877643
No 18
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-33 Score=212.13 Aligned_cols=173 Identities=39% Similarity=0.735 Sum_probs=158.6
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 35678999999999999999999999999888888888888888888888899999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
+|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++..++++++++||++|.|++++|+
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999988876656899999999999987777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 027382 171 TVLTEIYRIISKK 183 (224)
Q Consensus 171 ~i~~~i~~~~~~~ 183 (224)
+|.+.+.+.....
T Consensus 164 ~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 164 RLVDVICEKMSES 176 (203)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999998876554
No 19
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.9e-33 Score=207.95 Aligned_cols=168 Identities=45% Similarity=0.753 Sum_probs=152.9
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
.....+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 45678999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++..++++++++||++|.|++++|.
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99999999999999999999998887666899999999999987777888999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027382 171 TVLTEIYR 178 (224)
Q Consensus 171 ~i~~~i~~ 178 (224)
+|.+.+.+
T Consensus 168 ~l~~~~~~ 175 (181)
T 2efe_B 168 EIARRLPR 175 (181)
T ss_dssp HHHHTCC-
T ss_pred HHHHHHHh
Confidence 99876643
No 20
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.9e-33 Score=205.55 Aligned_cols=165 Identities=47% Similarity=0.767 Sum_probs=151.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
....+||+++|++|+|||||+++|.++.+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45789999999999999999999999988887888888888888888888999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT 171 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 171 (224)
++|||++++++++.+..|+..+......++|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999888776668999999999999776777888999999999999999999999999999999
Q ss_pred HHHHH
Q 027382 172 VLTEI 176 (224)
Q Consensus 172 i~~~i 176 (224)
|.+.+
T Consensus 163 i~~~~ 167 (170)
T 1r2q_A 163 IAKKL 167 (170)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 88654
No 21
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.6e-34 Score=212.30 Aligned_cols=172 Identities=38% Similarity=0.728 Sum_probs=148.0
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382 8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87 (224)
Q Consensus 8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 87 (224)
.+.+.+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 19 ~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 98 (192)
T 2il1_A 19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRS 98 (192)
T ss_dssp ---CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHH
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence 34567789999999999999999999999998887888888888888888888889999999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHH
Q 027382 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE-NLFFMETSALEATNVE 166 (224)
Q Consensus 88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~ 166 (224)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++.. +++++++||++|.|++
T Consensus 99 ~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 99 AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHH
Confidence 999999999999999999999998888776678999999999999877778888899999885 7899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027382 167 TAFLTVLTEIYRI 179 (224)
Q Consensus 167 ~~~~~i~~~i~~~ 179 (224)
++|++|.+.+.+.
T Consensus 179 ~l~~~l~~~i~~~ 191 (192)
T 2il1_A 179 EIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888653
No 22
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=4.1e-33 Score=203.95 Aligned_cols=165 Identities=41% Similarity=0.732 Sum_probs=152.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
..+.+||+++|++|+|||||+++|.+..+...+.++.+.++......+.+..+.+.+||+||.+.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45679999999999999999999999998888888888888888888888999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT 171 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 171 (224)
++|||++++.+++.+..|+..+........|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999988876678999999999999876778888999999999999999999999999999999
Q ss_pred HHHHH
Q 027382 172 VLTEI 176 (224)
Q Consensus 172 i~~~i 176 (224)
+.+.+
T Consensus 163 i~~~i 167 (170)
T 1z0j_A 163 ISRRI 167 (170)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98765
No 23
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=6.6e-34 Score=208.26 Aligned_cols=166 Identities=39% Similarity=0.680 Sum_probs=144.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
.+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 46789999999999999999999999988877888888888878888888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT 171 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 171 (224)
++|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++..+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999998887765557999999999999877778888999999999999999999999999999999
Q ss_pred HHHHHH
Q 027382 172 VLTEIY 177 (224)
Q Consensus 172 i~~~i~ 177 (224)
+.+.+.
T Consensus 163 l~~~~~ 168 (170)
T 1z08_A 163 LCKRMI 168 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998775
No 24
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=3.7e-33 Score=208.42 Aligned_cols=173 Identities=36% Similarity=0.653 Sum_probs=154.4
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeE-EEEEEECCe---------EEEEEEEeCCChhhhhhh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQ-TKTLSIDHK---------TVKAQIWDTAGQERYRAV 80 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~D~~G~~~~~~~ 80 (224)
+.+..++|+|+|++|||||||+++|.+..+...+.++.+.++. ...+...+. .+.+.+||+||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 5678999999999999999999999998887778888887776 555656555 789999999999999999
Q ss_pred hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcC
Q 027382 81 TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSA 159 (224)
Q Consensus 81 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (224)
+..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++++++..++++++++||
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999998877654 57999999999999876778888999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcc
Q 027382 160 LEATNVETAFLTVLTEIYRIISKK 183 (224)
Q Consensus 160 ~~~~~v~~~~~~i~~~i~~~~~~~ 183 (224)
+++.|++++|.+|.+.+.+...+.
T Consensus 167 ~~~~~v~~l~~~l~~~~~~~~~~~ 190 (195)
T 3bc1_A 167 ANGTNISHAIEMLLDLIMKRMERS 190 (195)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999998776544
No 25
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=3.4e-33 Score=207.11 Aligned_cols=170 Identities=31% Similarity=0.481 Sum_probs=151.5
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382 8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87 (224)
Q Consensus 8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 87 (224)
+.......+||+|+|++|||||||+++|.+..+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++.
T Consensus 11 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 89 (183)
T 3kkq_A 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89 (183)
T ss_dssp ---CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHH
T ss_pred CCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhc
Confidence 344566789999999999999999999999988888888877666 6667788899999999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCC-CCCCH
Q 027382 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSAL-EATNV 165 (224)
Q Consensus 88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~v 165 (224)
+|++++|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..+++++++..++++++++||+ ++.|+
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNV 169 (183)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCH
Confidence 999999999999999999999998886543 3579999999999998878889999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHH
Q 027382 166 ETAFLTVLTEIYR 178 (224)
Q Consensus 166 ~~~~~~i~~~i~~ 178 (224)
+++|+.+.+.+.+
T Consensus 170 ~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 170 DKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 26
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=5.9e-33 Score=206.58 Aligned_cols=169 Identities=34% Similarity=0.548 Sum_probs=146.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
...+||+++|++|||||||+++|.+..+...+.++.+ +.......+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999999888777777753 444566677889999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT 171 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 171 (224)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ +....+++++++..++++++++||++|.|++++|.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999998887754 35799999999999974 556788899999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 027382 172 VLTEIYRIISKK 183 (224)
Q Consensus 172 i~~~i~~~~~~~ 183 (224)
+.+.+.+.....
T Consensus 160 l~~~~~~~~~~~ 171 (189)
T 4dsu_A 160 LVREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhc
Confidence 999987765543
No 27
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.3e-33 Score=205.84 Aligned_cols=170 Identities=45% Similarity=0.725 Sum_probs=145.2
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382 10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA 88 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 88 (224)
+..+..++|+++|++|||||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34678899999999999999999999998875 45677778888777778888899999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA 168 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 168 (224)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++.++++++++||+++.|++++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999888776668999999999999877778888999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027382 169 FLTVLTEIYRI 179 (224)
Q Consensus 169 ~~~i~~~i~~~ 179 (224)
|+++.+.+.+.
T Consensus 165 ~~~l~~~~~~~ 175 (180)
T 2g6b_A 165 FTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999887543
No 28
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1.8e-33 Score=205.78 Aligned_cols=165 Identities=42% Similarity=0.767 Sum_probs=144.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 57899999999999999999999998887788887878887888888888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
|||++++.++..+..|+..+......+.|+++|+||+|+. .+.+..++++++++.++++++++||++|.|++++|.++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999998888766689999999999994 356778889999999999999999999999999999999
Q ss_pred HHHHHH
Q 027382 174 TEIYRI 179 (224)
Q Consensus 174 ~~i~~~ 179 (224)
+.+.+.
T Consensus 161 ~~~~~~ 166 (170)
T 1g16_A 161 KLIQEK 166 (170)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 888654
No 29
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-33 Score=210.94 Aligned_cols=168 Identities=42% Similarity=0.728 Sum_probs=152.4
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382 10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAV 89 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 89 (224)
+.++..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 44678899999999999999999999999887778888888888888888888999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382 90 GAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169 (224)
Q Consensus 90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 169 (224)
++|+|||+++++++..+..|+..+.+....+.|+++|+||+|+.+.+.+..++++++++..+++++++||+++.|++++|
T Consensus 98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 177 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177 (192)
T ss_dssp EEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence 99999999999999999999999888766689999999999997667788899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027382 170 LTVLTEIY 177 (224)
Q Consensus 170 ~~i~~~i~ 177 (224)
++|.+.+.
T Consensus 178 ~~l~~~i~ 185 (192)
T 2fg5_A 178 QGISRQIP 185 (192)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHHH
Confidence 99987653
No 30
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=2.6e-33 Score=213.36 Aligned_cols=175 Identities=38% Similarity=0.670 Sum_probs=153.2
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCe----------EEEEEEEeCCChhhhh
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK----------TVKAQIWDTAGQERYR 78 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~D~~G~~~~~ 78 (224)
.+.+++.+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++. .+.+.+||+||++.+.
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 98 (217)
T 2f7s_A 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR 98 (217)
T ss_dssp --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence 445688999999999999999999999998887777777777777666666655 7899999999999999
Q ss_pred hhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEE
Q 027382 79 AVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMET 157 (224)
Q Consensus 79 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (224)
..+..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++++++..++++++++
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET 178 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEE
Confidence 9999999999999999999999999999999887766543 579999999999998767788899999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcc
Q 027382 158 SALEATNVETAFLTVLTEIYRIISKK 183 (224)
Q Consensus 158 s~~~~~~v~~~~~~i~~~i~~~~~~~ 183 (224)
||+++.|++++|++|.+.+.+.....
T Consensus 179 Sa~~g~gi~~l~~~l~~~i~~~~~~~ 204 (217)
T 2f7s_A 179 SAATGQNVEKAVETLLDLIMKRMEQC 204 (217)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999988765543
No 31
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.5e-33 Score=203.61 Aligned_cols=163 Identities=44% Similarity=0.734 Sum_probs=148.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
..+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 36899999999999999999999998888888888888888888888899999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC---CCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL---RAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
|||++++.++..+..|+..+......+.|+++|+||+|+.+. +.+..++.++++...+++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999888776668999999999999654 56778889999999999999999999999999999
Q ss_pred HHHHHH
Q 027382 171 TVLTEI 176 (224)
Q Consensus 171 ~i~~~i 176 (224)
++.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 988654
No 32
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=4.7e-33 Score=205.64 Aligned_cols=171 Identities=30% Similarity=0.500 Sum_probs=151.0
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA 88 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 88 (224)
..+....++|+|+|++|||||||+++|++..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 81 (181)
T 2fn4_A 3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81 (181)
T ss_dssp -CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence 445677899999999999999999999999887778888776655 5667788889999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGH-ADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET 167 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 167 (224)
|++++|||+++++++..+..|+..+.+. ...+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|+++
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 161 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDE 161 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 9999999999999999999999887443 345799999999999987777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027382 168 AFLTVLTEIYRII 180 (224)
Q Consensus 168 ~~~~i~~~i~~~~ 180 (224)
+|+++.+.+.+..
T Consensus 162 l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 162 AFEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999998887654
No 33
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.4e-34 Score=212.76 Aligned_cols=164 Identities=32% Similarity=0.432 Sum_probs=142.1
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
....++|+|+|.+|||||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 456799999999999999999999998887777777665443 4456788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 169 (224)
++|||++++++++.+..|+..+.+... .+.|+++|+||+|+.+ +.+..+++..++..++++++++||++|.|++++|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 999999999999999888877766432 3689999999999975 5567888999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027382 170 LTVLTEIY 177 (224)
Q Consensus 170 ~~i~~~i~ 177 (224)
+++++.+.
T Consensus 163 ~~l~~~~~ 170 (199)
T 2gf0_A 163 QELLTLET 170 (199)
T ss_dssp HHHHHHCS
T ss_pred HHHHHHHh
Confidence 99987653
No 34
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=3.8e-33 Score=206.50 Aligned_cols=167 Identities=30% Similarity=0.423 Sum_probs=149.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
....++|+++|++|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 45689999999999999999999999888888888877776 66777888999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
++|||++++++++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..+++++++..++++++++||++|.|++++|.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 999999999999999999988866543 5799999999999988888899999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027382 171 TVLTEIYRI 179 (224)
Q Consensus 171 ~i~~~i~~~ 179 (224)
.+++.+.+.
T Consensus 162 ~l~~~~~~~ 170 (181)
T 3t5g_A 162 RIILEAEKM 170 (181)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHh
Confidence 999887654
No 35
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2.4e-33 Score=204.81 Aligned_cols=166 Identities=35% Similarity=0.622 Sum_probs=150.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
.+..+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 35689999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT 171 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 171 (224)
++|||++++++++.+..|+..+.... .+.|+++|+||+|+.+.+.+..+++++++...+++++++||+++.|++++|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 99999999999999999998887655 47999999999999776777888999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027382 172 VLTEIYR 178 (224)
Q Consensus 172 i~~~i~~ 178 (224)
+.+.+.+
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9987753
No 36
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=202.85 Aligned_cols=168 Identities=27% Similarity=0.378 Sum_probs=138.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh--hhhhhHhHhcCCCE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER--YRAVTSAYYRGAVG 90 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--~~~~~~~~~~~~d~ 90 (224)
+..+||+++|++|||||||+++|.+..+...+. +.+.+.....+.+++..+.+.+||+||++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 357999999999999999999999988755443 457777777788888999999999999887 56677888999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 169 (224)
+++|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..++++.++..++++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998887653 3579999999999998777788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 027382 170 LTVLTEIYRIIS 181 (224)
Q Consensus 170 ~~i~~~i~~~~~ 181 (224)
+++.+.+.+...
T Consensus 161 ~~l~~~~~~~~~ 172 (175)
T 2nzj_A 161 EGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhc
Confidence 999998876544
No 37
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-32 Score=205.52 Aligned_cols=171 Identities=42% Similarity=0.760 Sum_probs=154.1
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382 8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87 (224)
Q Consensus 8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 87 (224)
|.+.....++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (195)
T 1x3s_A 8 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG 87 (195)
T ss_dssp -CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTT
T ss_pred cccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 44556788999999999999999999999999888888888888888888888999999999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 166 (224)
Q Consensus 88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 166 (224)
+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ +.+..+++.+++..++++++++||+++.|++
T Consensus 88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 166 (195)
T 1x3s_A 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQ 166 (195)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence 9999999999999999999999998877653 5799999999999954 5677888999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027382 167 TAFLTVLTEIYRI 179 (224)
Q Consensus 167 ~~~~~i~~~i~~~ 179 (224)
++|+++.+.+.+.
T Consensus 167 ~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 167 CAFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888654
No 38
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-32 Score=208.37 Aligned_cols=173 Identities=41% Similarity=0.746 Sum_probs=153.5
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
..+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 45678999999999999999999999998887888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+. .+.+..+++++++..++++++++||+++.|++++|.
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999998887766679999999999994 456778889999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc
Q 027382 171 TVLTEIYRIISKKS 184 (224)
Q Consensus 171 ~i~~~i~~~~~~~~ 184 (224)
+|.+.+.+......
T Consensus 175 ~l~~~~~~~~~~~~ 188 (213)
T 3cph_A 175 TLAKLIQEKIDSNK 188 (213)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhhh
Confidence 99999887765443
No 39
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=4.4e-33 Score=209.05 Aligned_cols=170 Identities=25% Similarity=0.342 Sum_probs=143.8
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh-hhHhHhcC
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA-VTSAYYRG 87 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~ 87 (224)
+.+....+||+|+|++|||||||+++|.+......+.++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++.
T Consensus 17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 96 (195)
T 3cbq_A 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT 96 (195)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence 33556889999999999999999999986554444445556666667777889999999999999987654 77888999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 166 (224)
Q Consensus 88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 166 (224)
+|++|+|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++++++..++++++++||++|.|++
T Consensus 97 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~ 176 (195)
T 3cbq_A 97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 176 (195)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHH
Confidence 9999999999999999999999988876543 579999999999998777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 167 TAFLTVLTEIYR 178 (224)
Q Consensus 167 ~~~~~i~~~i~~ 178 (224)
++|..+++.+.+
T Consensus 177 ~lf~~l~~~i~~ 188 (195)
T 3cbq_A 177 ELFEGAVRQIRL 188 (195)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999988753
No 40
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.9e-32 Score=201.84 Aligned_cols=167 Identities=40% Similarity=0.679 Sum_probs=146.7
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
+.+..++|+++|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 45678999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCC----CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEcCCCCCCH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-RENLFFMETSALEATNV 165 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v 165 (224)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..+++.+++. ..+++++++||++|.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999988876543 578999999999997 46677888999998 56789999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027382 166 ETAFLTVLTEIYR 178 (224)
Q Consensus 166 ~~~~~~i~~~i~~ 178 (224)
+++|+++++.+.+
T Consensus 162 ~~l~~~l~~~~~~ 174 (177)
T 1wms_A 162 AAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 41
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=4.5e-33 Score=205.38 Aligned_cols=167 Identities=39% Similarity=0.706 Sum_probs=151.2
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
.....++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 34567999999999999999999999998888888888888888888888899999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 169 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 169 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999888776666899999999999987777888899999999999999999999999999999
Q ss_pred HHHHHHH
Q 027382 171 TVLTEIY 177 (224)
Q Consensus 171 ~i~~~i~ 177 (224)
++.+.+.
T Consensus 170 ~l~~~~~ 176 (179)
T 2y8e_A 170 RVAAALP 176 (179)
T ss_dssp HHHHTCC
T ss_pred HHHHHHh
Confidence 9987653
No 42
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=210.46 Aligned_cols=167 Identities=40% Similarity=0.689 Sum_probs=139.1
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 45678999999999999999999999998877777888888888888889999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC------CCCCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG------SLRAVPTEDAQEFAQRENLFFMETSALEATN 164 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (224)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+. ..+.+..+++++++...+++++++||++|.|
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 9999999999999999999998887665679999999999995 3466778889999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027382 165 VETAFLTVLTEIY 177 (224)
Q Consensus 165 v~~~~~~i~~~i~ 177 (224)
++++|.++++.+.
T Consensus 184 v~el~~~l~~~i~ 196 (199)
T 2p5s_A 184 IVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998774
No 43
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.5e-32 Score=204.81 Aligned_cols=166 Identities=42% Similarity=0.739 Sum_probs=147.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-hhhHhHhcCCCE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR-AVTSAYYRGAVG 90 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-~~~~~~~~~~d~ 90 (224)
....+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+. .++..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 4467999999999999999999999999888888888888888888888889999999999999988 889999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCC---CCHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEA---TNVE 166 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~v~ 166 (224)
+|+|||++++.+++.+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..+++++++..++++++++||+++ .|+.
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence 999999999999999999998887765 467999999999999877778889999999999999999999999 9999
Q ss_pred HHHHHHHHHHH
Q 027382 167 TAFLTVLTEIY 177 (224)
Q Consensus 167 ~~~~~i~~~i~ 177 (224)
++|.+|++.+.
T Consensus 177 ~l~~~l~~~i~ 187 (189)
T 1z06_A 177 AIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHHh
Confidence 99999987764
No 44
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.1e-32 Score=201.74 Aligned_cols=164 Identities=26% Similarity=0.355 Sum_probs=133.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh-hhHhHhcCCCEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA-VTSAYYRGAVGAML 93 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~vi~ 93 (224)
.+||+++|++|||||||+++|.+......+.++.+.+.....+.+++..+.+.+||+||++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 68999999999999999999998777666666666777777788899999999999999988865 77788899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 172 (224)
|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++++++..+++++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999988877654 479999999999998778889999999999999999999999999999999999
Q ss_pred HHHHHH
Q 027382 173 LTEIYR 178 (224)
Q Consensus 173 ~~~i~~ 178 (224)
++.+..
T Consensus 162 ~~~i~~ 167 (169)
T 3q85_A 162 VRQIRL 167 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
No 45
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=4.4e-32 Score=204.14 Aligned_cols=167 Identities=36% Similarity=0.675 Sum_probs=148.0
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeE----------------------------
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKT---------------------------- 63 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 63 (224)
.+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3567999999999999999999999999888888888888877777776554
Q ss_pred ---------EEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 64 ---------VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 64 ---------~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
+.+.+||+||++.+...+..+++.+|++|+|||++++.++..+..|+..+..... .|+++|+||+| ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cc
Confidence 8999999999999999999999999999999999999999999999988877653 99999999999 55
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 027382 135 LRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIIS 181 (224)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~ 181 (224)
.+.+..+++++++...+++++++||++|.|++++|+++.+.+.+..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 207 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII 207 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 56778899999999999999999999999999999999998877643
No 46
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=4.4e-33 Score=205.43 Aligned_cols=167 Identities=32% Similarity=0.504 Sum_probs=147.2
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECC-eEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDH-KTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
....++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 35679999999999999999999999888777778878788878887865 67999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCC--CCCc-EEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHAD--KNIV-IMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET 167 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 167 (224)
+++|||++++++++.+..|+..+..... ...| +++|+||+|+.+.+.+..++++++++..+++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999888876432 1345 899999999987677888899999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027382 168 AFLTVLTEIYR 178 (224)
Q Consensus 168 ~~~~i~~~i~~ 178 (224)
+|.++.+.+.+
T Consensus 163 l~~~l~~~~~~ 173 (178)
T 2hxs_A 163 CFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999987743
No 47
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=9.1e-33 Score=205.93 Aligned_cols=165 Identities=27% Similarity=0.444 Sum_probs=141.9
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
+....+||+|+|++|||||||+++|+++.+...+.++.+..+ .....+++..+.+.+||+||++.+..+ ..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 456789999999999999999999999998888888877665 345667889999999999999888764 678999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcC-CCCCCHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHAD---KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSA-LEATNVE 166 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~v~ 166 (224)
+++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++++++..++++++++|| ++|.|++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 9999999999999999999988876531 47999999999999877778889999999999999999999 8999999
Q ss_pred HHHHHHHHHHH
Q 027382 167 TAFLTVLTEIY 177 (224)
Q Consensus 167 ~~~~~i~~~i~ 177 (224)
++|+.+++.+.
T Consensus 175 ~lf~~l~~~i~ 185 (187)
T 3c5c_A 175 HVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998774
No 48
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=9.3e-33 Score=204.19 Aligned_cols=170 Identities=38% Similarity=0.658 Sum_probs=135.2
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAGQERYRAVTSAYYRGAV 89 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 89 (224)
+.+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 46678999999999999999999999998888888887878877777776 56789999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCC----CCCcEEEEEeCCCCCC-CCCCCHHHHHHHHH-HcCCeEEEEcCCCCC
Q 027382 90 GAMLVYDMTKRQSFDHMARWLDELRGHAD----KNIVIMLIGNKCDLGS-LRAVPTEDAQEFAQ-RENLFFMETSALEAT 163 (224)
Q Consensus 90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~ 163 (224)
++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++.+++. ..+.+++++||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 99999999999999999999988776542 5799999999999953 34567888999988 466889999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 027382 164 NVETAFLTVLTEIYRII 180 (224)
Q Consensus 164 ~v~~~~~~i~~~i~~~~ 180 (224)
|++++|+++.+.+.+..
T Consensus 164 gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 164 NVDTAFEEIARSALQQN 180 (182)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999887654
No 49
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=7e-32 Score=200.65 Aligned_cols=163 Identities=19% Similarity=0.328 Sum_probs=142.8
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
.....+||+|+|++|||||||+++|+++.+...+.++ +..+ ...+.+++..+.+.+|||+|++.+. +++.+|+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 4557899999999999999999999999988777776 3333 4677788999999999999988766 7788999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCC--CCCCCCCHHHHHHHHHHcC-CeEEEEcCCCCCCHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDL--GSLRAVPTEDAQEFAQREN-LFFMETSALEATNVE 166 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~--~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~ 166 (224)
+++|||++++++++.+..|+..+..... .+.|+++|+||+|+ ...+.+..+++++++..++ ++|+++||++|.|++
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~ 168 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE 168 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence 9999999999999999999999987653 57999999999999 3456788899999999997 899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027382 167 TAFLTVLTEIYRII 180 (224)
Q Consensus 167 ~~~~~i~~~i~~~~ 180 (224)
++|.++++.+.+..
T Consensus 169 ~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 169 RVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887653
No 50
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=2.7e-32 Score=204.35 Aligned_cols=167 Identities=25% Similarity=0.461 Sum_probs=146.7
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
.....+||+++|.+|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++++|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 4567899999999999999999999999988788888766655 456678899999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCCC--CCCCHHHHHHHHHHcCCe-EEEEcCCCCCCHH
Q 027382 91 AMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGSL--RAVPTEDAQEFAQRENLF-FMETSALEATNVE 166 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~ 166 (224)
+|+|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++++++..+++. ++++||++|.|++
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence 9999999999999997 66888877654 47999999999999753 667889999999999998 9999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027382 167 TAFLTVLTEIYRI 179 (224)
Q Consensus 167 ~~~~~i~~~i~~~ 179 (224)
++|+++++.+.+.
T Consensus 177 ~l~~~l~~~i~~~ 189 (194)
T 3reg_A 177 EVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
No 51
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.3e-33 Score=208.97 Aligned_cols=168 Identities=29% Similarity=0.460 Sum_probs=144.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
....+||+|+|.+|||||||+++|.+..+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 45789999999999999999999999998888888876665 55555667788999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
|+|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+...++++++...+++++++||++|.|++++|.
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998877543 5789999999999987788889999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027382 171 TVLTEIYRII 180 (224)
Q Consensus 171 ~i~~~i~~~~ 180 (224)
+|++.+.+..
T Consensus 180 ~l~~~i~~~~ 189 (201)
T 3oes_A 180 KVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhhh
Confidence 9999886543
No 52
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1e-32 Score=209.98 Aligned_cols=170 Identities=23% Similarity=0.410 Sum_probs=145.0
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA 88 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 88 (224)
+.+....+||+|+|++|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 99 (214)
T 3q3j_B 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 99 (214)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence 34556789999999999999999999999998888888877665 45566778889999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHH-HHHHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eE
Q 027382 89 VGAMLVYDMTKRQSFDH-MARWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FF 154 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~ 154 (224)
|++|+|||+++++++.. +..|+..+.... .+.|+++|+||+|+.+. +.+..+++.+++..+++ +|
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 178 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY 178 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEE
Confidence 99999999999999998 688999888765 47999999999999653 67889999999999999 89
Q ss_pred EEEcCCCCCC-HHHHHHHHHHHHHHHH
Q 027382 155 METSALEATN-VETAFLTVLTEIYRII 180 (224)
Q Consensus 155 ~~~s~~~~~~-v~~~~~~i~~~i~~~~ 180 (224)
+++||++|.| ++++|..+++.+.+..
T Consensus 179 ~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 179 LEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred EEeccCCCcccHHHHHHHHHHHHhccC
Confidence 9999999998 9999999998886543
No 53
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=4.5e-32 Score=197.82 Aligned_cols=163 Identities=27% Similarity=0.375 Sum_probs=123.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
.+||+++|++|||||||+++|.+...... .++.+.++ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999997665432 34444444 45667889999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 95 YDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..++.++++...+++++++||++|.|++++|+++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999998887654 35799999999999988788899999999999999999999999999999999999
Q ss_pred HHHHHH
Q 027382 174 TEIYRI 179 (224)
Q Consensus 174 ~~i~~~ 179 (224)
+.+.+.
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887653
No 54
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.2e-32 Score=205.30 Aligned_cols=169 Identities=27% Similarity=0.335 Sum_probs=140.2
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-hhhhhHhHhcCC
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-YRAVTSAYYRGA 88 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~ 88 (224)
.....+||+|+|.+|||||||+++|.+.... ....++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.+
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 4556799999999999999999999974431 22223456677777788889999999999999876 556677788999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET 167 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 167 (224)
|++|+|||++++++++.+..|+..+.+.. ..++|+++|+||+|+.+.+.+..++.+.++..++++|+++||++|.|+++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999988877643 24799999999999977677888888899999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 168 AFLTVLTEIYRI 179 (224)
Q Consensus 168 ~~~~i~~~i~~~ 179 (224)
+|+++++.+...
T Consensus 193 lf~~l~~~i~~~ 204 (211)
T 2g3y_A 193 LFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999887543
No 55
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=4.2e-32 Score=197.94 Aligned_cols=163 Identities=34% Similarity=0.555 Sum_probs=142.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
..+||+++|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 468999999999999999999999888777777765554 3455678888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 172 (224)
|||++++++++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..+++++++...+++++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999988876654 579999999999998767788899999999999999999999999999999999
Q ss_pred HHHHH
Q 027382 173 LTEIY 177 (224)
Q Consensus 173 ~~~i~ 177 (224)
.+.+.
T Consensus 162 ~~~i~ 166 (168)
T 1u8z_A 162 MREIR 166 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98775
No 56
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=8.1e-32 Score=199.97 Aligned_cols=169 Identities=33% Similarity=0.517 Sum_probs=148.1
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
.....+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 345679999999999999999999999888777777765554 3456678888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382 91 AMLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 169 (224)
+++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++++++..++++++++||+++.|++++|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence 9999999999999999999988876654 479999999999998767788899999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027382 170 LTVLTEIYRII 180 (224)
Q Consensus 170 ~~i~~~i~~~~ 180 (224)
++|.+.+.+..
T Consensus 173 ~~l~~~i~~~~ 183 (187)
T 2a9k_A 173 FDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999887654
No 57
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=4.4e-32 Score=197.86 Aligned_cols=161 Identities=30% Similarity=0.542 Sum_probs=143.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
.+||+++|++|||||||+++|.++.+...+.++.+..+. ....+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 589999999999999999999998887777777665543 5566778889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHHHHHHHH
Q 027382 95 YDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE-NLFFMETSALEATNVETAFLTV 172 (224)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~~~~i 172 (224)
||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..+++++++..+ +.+++++||++|.|++++|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 99999999999999988877643 357999999999999877778888999999987 7899999999999999999999
Q ss_pred HHHH
Q 027382 173 LTEI 176 (224)
Q Consensus 173 ~~~i 176 (224)
.+.+
T Consensus 162 ~~~i 165 (167)
T 1c1y_A 162 VRQI 165 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
No 58
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.2e-32 Score=208.09 Aligned_cols=170 Identities=30% Similarity=0.514 Sum_probs=114.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC--CCCCCccCCcceeeEEEEEEECCe--EEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARN--EFSVDSKATIGVEFQTKTLSIDHK--TVKAQIWDTAGQERYRAVTSAYYRGA 88 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~ 88 (224)
...++|+|+|++|||||||+++|.+. .+...+.++.+.++....+.+++. .+.+.+||+||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 57799999999999999999999998 666677777776777777777776 89999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCC-CCCCCHHHHHHHHHHcCCeEEEEcCCC-CC
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGHAD---KNIVIMLIGNKCDLGS-LRAVPTEDAQEFAQRENLFFMETSALE-AT 163 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~ 163 (224)
|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..++++++++.++++++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999887665 5899999999999987 677888999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHhc
Q 027382 164 NVETAFLTVLTEIYRIISK 182 (224)
Q Consensus 164 ~v~~~~~~i~~~i~~~~~~ 182 (224)
|++++|+++.+.+.+....
T Consensus 178 gi~~l~~~i~~~~~~~~~~ 196 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYED 196 (208)
T ss_dssp --CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999988776544
No 59
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=8.1e-32 Score=202.72 Aligned_cols=171 Identities=27% Similarity=0.459 Sum_probs=139.2
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA 88 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 88 (224)
....+..++|+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++
T Consensus 14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (201)
T 2q3h_A 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92 (201)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence 34567889999999999999999999999887777777766444 45566788889999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eE
Q 027382 89 VGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQRENL-FF 154 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~ 154 (224)
|++|+|||+++++++..+. .|+..+..... +.|+++|+||+|+.+ .+.+..+++..++..+++ ++
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY 171 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 9999999999999999997 69888877654 799999999999964 356778889999999887 89
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 027382 155 METSALEATNVETAFLTVLTEIYRIIS 181 (224)
Q Consensus 155 ~~~s~~~~~~v~~~~~~i~~~i~~~~~ 181 (224)
+++||++|.|++++|+++++.+.+...
T Consensus 172 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 172 IECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 999999999999999999998876654
No 60
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=6.2e-32 Score=196.84 Aligned_cols=163 Identities=30% Similarity=0.474 Sum_probs=144.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
.++|+++|++|||||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 5899999999999999999999988877777775543 356677888899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 95 YDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
||++++.+++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..+++++++..++++++++||++|.|++++|+++.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 999999999999999888776543 5799999999999977677888899999999999999999999999999999999
Q ss_pred HHHHH
Q 027382 174 TEIYR 178 (224)
Q Consensus 174 ~~i~~ 178 (224)
+.+.+
T Consensus 162 ~~~~~ 166 (167)
T 1kao_A 162 RQMNY 166 (167)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 87743
No 61
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=1.4e-31 Score=197.63 Aligned_cols=163 Identities=21% Similarity=0.324 Sum_probs=137.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
...+||+++|++|||||||+++|.++.+.. +.++.+.. ....+.+++..+.+.+||+||++. ..+++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 357999999999999999999999988866 66776644 356677888899999999999875 46788899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhc---CCCCCcEEEEEeCCCCC--CCCCCCHHHHHHHHHHc-CCeEEEEcCCCCCCHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGH---ADKNIVIMLIGNKCDLG--SLRAVPTEDAQEFAQRE-NLFFMETSALEATNVE 166 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~ilv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~ 166 (224)
+|||++++++++.+..|+..+... ...+.|+++|+||+|+. ..+.+..+++++++... +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 999999999999999976555443 23579999999999993 45678889999999886 6889999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 027382 167 TAFLTVLTEIYRIISK 182 (224)
Q Consensus 167 ~~~~~i~~~i~~~~~~ 182 (224)
++|+++++.+.+....
T Consensus 158 ~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998776544
No 62
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=9.5e-33 Score=209.57 Aligned_cols=166 Identities=30% Similarity=0.529 Sum_probs=142.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
...+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999999988777778876554 345667788899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCCC--------CCCHHHHHHHHHHcCC-eEEEEcCCCC
Q 027382 93 LVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSLR--------AVPTEDAQEFAQRENL-FFMETSALEA 162 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--------~~~~~~~~~~~~~~~~-~~~~~s~~~~ 162 (224)
+|||++++++++.+. .|+..+....+ +.|+++|+||+|+.+.+ .+..+++.+++..+++ +++++||++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999987 79888877654 79999999999986543 2467889999999986 8999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 027382 163 TNVETAFLTVLTEIYRII 180 (224)
Q Consensus 163 ~~v~~~~~~i~~~i~~~~ 180 (224)
.|++++|+++++.+.+..
T Consensus 165 ~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp TTHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHHhhhh
Confidence 999999999998886544
No 63
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-31 Score=199.52 Aligned_cols=165 Identities=27% Similarity=0.446 Sum_probs=145.1
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVG 90 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 90 (224)
+.+..++|+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 446889999999999999999999999988777777766554 4456677788999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEE
Q 027382 91 AMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFME 156 (224)
Q Consensus 91 vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 156 (224)
+|+|||+++++++..+. .|+..+.+... +.|+++|+||+|+.+. +.+..+++.++++.+++ ++++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 171 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE 171 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence 99999999999999997 68888877644 7999999999999753 46778899999999997 8999
Q ss_pred EcCCCCCCHHHHHHHHHHHHH
Q 027382 157 TSALEATNVETAFLTVLTEIY 177 (224)
Q Consensus 157 ~s~~~~~~v~~~~~~i~~~i~ 177 (224)
+||++|.|++++|+++++.++
T Consensus 172 ~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 172 CSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998764
No 64
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=4.1e-32 Score=205.29 Aligned_cols=172 Identities=24% Similarity=0.464 Sum_probs=143.5
Q ss_pred ccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhH
Q 027382 5 YGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAY 84 (224)
Q Consensus 5 ~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 84 (224)
..+|....+..+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+
T Consensus 18 ~~~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 96 (205)
T 1gwn_A 18 GSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLS 96 (205)
T ss_dssp ---------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGG
T ss_pred CCCCCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhh
Confidence 345666677899999999999999999999999988877788876555 3456677888999999999999999999999
Q ss_pred hcCCCEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC
Q 027382 85 YRGAVGAMLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQREN 151 (224)
Q Consensus 85 ~~~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~ 151 (224)
++.+|++|+|||++++++++.+ ..|+..+.+.. .+.|+++|+||+|+.+ .+.+..++++++++.++
T Consensus 97 ~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (205)
T 1gwn_A 97 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 175 (205)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC
Confidence 9999999999999999999998 67988887654 3799999999999964 25678888999999987
Q ss_pred -CeEEEEcCC-CCCCHHHHHHHHHHHHHH
Q 027382 152 -LFFMETSAL-EATNVETAFLTVLTEIYR 178 (224)
Q Consensus 152 -~~~~~~s~~-~~~~v~~~~~~i~~~i~~ 178 (224)
++++++||+ ++.|++++|+.+++.+++
T Consensus 176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 176 AATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 689999999 689999999999988764
No 65
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-31 Score=201.22 Aligned_cols=167 Identities=32% Similarity=0.456 Sum_probs=146.5
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
....+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 35679999999999999999999999988877888766554 45566788899999999999887 77888999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC-CHHHHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT-NVETAF 169 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~v~~~~ 169 (224)
++|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|. |++++|
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence 99999999999999999998887654 3579999999999998767788899999999999999999999999 999999
Q ss_pred HHHHHHHHHHH
Q 027382 170 LTVLTEIYRII 180 (224)
Q Consensus 170 ~~i~~~i~~~~ 180 (224)
+++++.+.+..
T Consensus 183 ~~l~~~i~~~~ 193 (196)
T 2atv_A 183 YELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999887653
No 66
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=8.6e-32 Score=199.98 Aligned_cols=165 Identities=25% Similarity=0.485 Sum_probs=142.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
.+..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999999988777778866555 34566778889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEE
Q 027382 92 MLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGS------------LRAVPTEDAQEFAQREN-LFFMET 157 (224)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~ 157 (224)
|+|||++++++++.+ ..|+..+.+.. .+.|+++|+||+|+.+ .+.+..++++++++.++ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 67888887654 3799999999999964 25678889999999987 689999
Q ss_pred cCC-CCCCHHHHHHHHHHHHHH
Q 027382 158 SAL-EATNVETAFLTVLTEIYR 178 (224)
Q Consensus 158 s~~-~~~~v~~~~~~i~~~i~~ 178 (224)
||+ ++.|++++|+.+++.+++
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 999 689999999999987753
No 67
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=8.2e-32 Score=205.23 Aligned_cols=172 Identities=29% Similarity=0.482 Sum_probs=147.4
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAGQERYRAVTSAYYRGAV 89 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 89 (224)
..+..+||+|+|.+|||||||+++|+++.+...+.++.+.+......... +..+.+.+||+||++.+...+..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 45678999999999999999999999988877777887777766665553 44489999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH
Q 027382 90 GAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAF 169 (224)
Q Consensus 90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 169 (224)
++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999999887776679999999999998777788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 027382 170 LTVLTEIYRIISK 182 (224)
Q Consensus 170 ~~i~~~i~~~~~~ 182 (224)
.++.+.+.+....
T Consensus 167 ~~l~~~~~~~~~~ 179 (218)
T 4djt_A 167 LHLARIFTGRPDL 179 (218)
T ss_dssp HHHHHHHHCCTTC
T ss_pred HHHHHHHhccccc
Confidence 9999888665443
No 68
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=2.1e-31 Score=197.69 Aligned_cols=163 Identities=28% Similarity=0.490 Sum_probs=143.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
...++|+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4679999999999999999999999888777777765444 455667889999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEc
Q 027382 93 LVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMETS 158 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 158 (224)
+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+. +.+..+++.+++..+++ +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 68888877654 7999999999998653 46778889999999997 899999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 027382 159 ALEATNVETAFLTVLTEIY 177 (224)
Q Consensus 159 ~~~~~~v~~~~~~i~~~i~ 177 (224)
|++|.|++++|+++.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHS
T ss_pred CCCccCHHHHHHHHHHHHh
Confidence 9999999999999998774
No 69
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=8e-31 Score=197.49 Aligned_cols=165 Identities=27% Similarity=0.456 Sum_probs=144.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
....+||+++|.+|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 457899999999999999999999999888777787766654 3466788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEE
Q 027382 92 MLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMET 157 (224)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (224)
|+|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++.+++...+. +++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999999999998 56888777654 37999999999999764 45778889999999988 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHHH
Q 027382 158 SALEATNVETAFLTVLTEIYR 178 (224)
Q Consensus 158 s~~~~~~v~~~~~~i~~~i~~ 178 (224)
||++|.|++++|+++.+.+++
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999987753
No 70
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.98 E-value=3.1e-34 Score=215.84 Aligned_cols=170 Identities=50% Similarity=0.845 Sum_probs=144.2
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382 8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87 (224)
Q Consensus 8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 87 (224)
+....+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 26 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 105 (199)
T 3l0i_B 26 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 105 (199)
T ss_dssp C-CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CC
T ss_pred cCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhc
Confidence 45566789999999999999999999999988887777887888888888888999999999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET 167 (224)
Q Consensus 88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 167 (224)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++..++++++++||++|.|+++
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 106 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 185 (199)
T ss_dssp CSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 99999999999999999999999999887767899999999999987777777788899999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027382 168 AFLTVLTEIY 177 (224)
Q Consensus 168 ~~~~i~~~i~ 177 (224)
+|.+|.+.+.
T Consensus 186 l~~~l~~~l~ 195 (199)
T 3l0i_B 186 SFMTMAAEIK 195 (199)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 71
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.98 E-value=2.3e-31 Score=202.38 Aligned_cols=166 Identities=31% Similarity=0.475 Sum_probs=124.5
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 34679999999999999999999999888777777755443 45567788899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEE
Q 027382 92 MLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMET 157 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (224)
|+|||++++++++.+. .|+..+.... .+.|+++|+||+|+.+. +.+..+++.++++..++ +++++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999997 6888887654 37999999999999654 36778889999999997 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHH
Q 027382 158 SALEATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 158 s~~~~~~v~~~~~~i~~~i~~~ 179 (224)
||++|.|++++|+++++.+.+.
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999888654
No 72
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.98 E-value=2.1e-30 Score=193.26 Aligned_cols=168 Identities=34% Similarity=0.532 Sum_probs=135.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
....++|+++|.+|||||||+++|.++.+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 34679999999999999999999999887777767655443 35566788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFL 170 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 170 (224)
++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ +....++++++++..+++++++||+++.|++++|+
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 175 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFY 175 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999888876543 4799999999999976 55678899999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 027382 171 TVLTEIYRIIS 181 (224)
Q Consensus 171 ~i~~~i~~~~~ 181 (224)
++.+.+.+...
T Consensus 176 ~l~~~~~~~~~ 186 (190)
T 3con_A 176 TLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99998876543
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=3.9e-31 Score=193.61 Aligned_cols=162 Identities=30% Similarity=0.453 Sum_probs=141.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
..++|+++|++|||||||+++|.++.+...+.++.+.++. .....++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4689999999999999999999998887777777665543 445567888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLT 171 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 171 (224)
|||++++++++.+..|+..+.+... .+.|+++|+||+|+.+.+.+...+...++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999999988887776532 47899999999999776777888889999999999999999999999999999
Q ss_pred HHHHH
Q 027382 172 VLTEI 176 (224)
Q Consensus 172 i~~~i 176 (224)
+.+.+
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 88654
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.98 E-value=1.8e-30 Score=188.72 Aligned_cols=161 Identities=34% Similarity=0.572 Sum_probs=141.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 94 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v 94 (224)
.++|+++|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 57999999999999999999999887777767655433 45566788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 95 YDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +....++++++++.++++++++|+++|.|++++|.++.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999988876543 4799999999999976 55678889999999999999999999999999999999
Q ss_pred HHHH
Q 027382 174 TEIY 177 (224)
Q Consensus 174 ~~i~ 177 (224)
+.+.
T Consensus 161 ~~~~ 164 (166)
T 2ce2_X 161 REIR 164 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8774
No 75
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=1.5e-31 Score=200.23 Aligned_cols=168 Identities=21% Similarity=0.259 Sum_probs=137.2
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc-----------cCCcceeeEEEEE-EECCeEEEEEEEeCCChhhhh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS-----------KATIGVEFQTKTL-SIDHKTVKAQIWDTAGQERYR 78 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~D~~G~~~~~ 78 (224)
..+..+||+|+|++|||||||++.+.+. +...+ .++.+.++....+ .+++..+.+.+|||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 4568899999999999999999766653 33332 2343444433333 456778999999999999999
Q ss_pred hhhHhHhcCCCEEEEEEeCC------ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 027382 79 AVTSAYYRGAVGAMLVYDMT------KRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL 152 (224)
Q Consensus 79 ~~~~~~~~~~d~vi~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 152 (224)
..+..+++++|++|+|||++ +.+++..+..|+..+.. ...+.|+++|+||+|+.+ .+..+++++++..+++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCC
Confidence 99999999999999999999 56778888888877743 235899999999999975 3678899999999999
Q ss_pred -eEEEEcCCCCCCHHHHHHHHHHHHHHHHhc
Q 027382 153 -FFMETSALEATNVETAFLTVLTEIYRIISK 182 (224)
Q Consensus 153 -~~~~~s~~~~~~v~~~~~~i~~~i~~~~~~ 182 (224)
+++++||++|.|++++|.++.+.+.+...+
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999877653
No 76
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.5e-30 Score=195.62 Aligned_cols=165 Identities=28% Similarity=0.459 Sum_probs=138.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
....+||+++|.+|||||||+++|.+..+...+.++.+..+.. .+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence 3567899999999999999999999998877777776655543 366788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEE
Q 027382 92 MLVYDMTKRQSFDHM-ARWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMET 157 (224)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (224)
|+|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++.+++...++ +++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 999999999999998 56888877654 37999999999999654 45778888999999988 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHHH
Q 027382 158 SALEATNVETAFLTVLTEIYR 178 (224)
Q Consensus 158 s~~~~~~v~~~~~~i~~~i~~ 178 (224)
||++|.|++++|++|.+.+.+
T Consensus 180 SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHS
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988753
No 77
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=2.8e-30 Score=193.25 Aligned_cols=167 Identities=27% Similarity=0.366 Sum_probs=137.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCC--CCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-hhhhhHhHhcCCC
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNE--FSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-YRAVTSAYYRGAV 89 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~~~~~~~~~d 89 (224)
...+||+++|++|||||||+++|.+.. +...+ ++.+.++....+.+++..+.+.+||++|.+. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 456999999999999999999999643 22333 3356666677778889999999999999776 5567788889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382 90 GAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA 168 (224)
Q Consensus 90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 168 (224)
++++|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+.+.+..++.+.++..++++|+++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988777643 357999999999999766777888888888889999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 169 FLTVLTEIYRII 180 (224)
Q Consensus 169 ~~~i~~~i~~~~ 180 (224)
|.++.+.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999998886543
No 78
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=1.5e-29 Score=190.28 Aligned_cols=171 Identities=68% Similarity=1.118 Sum_probs=151.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
+..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 46799999999999999999999999888888888888888888888999999999999999999889999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTV 172 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 172 (224)
+|+|+++..++..+..|+..+......+.|+++++||+|+.+.+.+..++++.++...++.++++|++++.|++++|+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999988889887766554578999999999997767777888999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 027382 173 LTEIYRIISKK 183 (224)
Q Consensus 173 ~~~i~~~~~~~ 183 (224)
.+.+.+.....
T Consensus 163 ~~~~~~~~~~~ 173 (199)
T 2f9l_A 163 LTEIYRIVSQK 173 (199)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHhhc
Confidence 99998765443
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=3.4e-31 Score=202.36 Aligned_cols=169 Identities=30% Similarity=0.530 Sum_probs=149.8
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA 88 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 88 (224)
+......+||+|+|.+|||||||+++|+.+.+...+.++.+.++......+++..+.+.+||+||++.+..++..+++++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 44566889999999999999999999887777777788888999988888999999999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHH
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETA 168 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 168 (224)
|++|+|||++++.++..+..|+..+.+... +.|+++|+||+|+.+... ..+...++...+++++++||++|.|++++
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKP 165 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999999887654 799999999999975433 23567788888999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 169 FLTVLTEIYRII 180 (224)
Q Consensus 169 ~~~i~~~i~~~~ 180 (224)
|.++.+.+....
T Consensus 166 ~~~l~~~l~~~~ 177 (221)
T 3gj0_A 166 FLWLARKLIGDP 177 (221)
T ss_dssp HHHHHHHHHTCT
T ss_pred HHHHHHHHHhCc
Confidence 999998886543
No 80
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=1.5e-30 Score=196.57 Aligned_cols=163 Identities=27% Similarity=0.467 Sum_probs=138.2
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
....+||+++|.+|||||||+++|.++.+...+.++.+ ......+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 45679999999999999999999999888777777754 44455666788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEE
Q 027382 92 MLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSLR------------AVPTEDAQEFAQRENL-FFMET 157 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 157 (224)
++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. .+..+++..+++..++ +++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999997 6888887765 479999999999986532 3678889999999886 59999
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q 027382 158 SALEATNVETAFLTVLTEI 176 (224)
Q Consensus 158 s~~~~~~v~~~~~~i~~~i 176 (224)
||++|.|++++|+++++.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998754
No 81
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=1.9e-31 Score=197.39 Aligned_cols=163 Identities=29% Similarity=0.519 Sum_probs=125.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
...+||+++|++|+|||||++++.++.+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45789999999999999999999998877777676554432 22334566788899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCCCC----------CCHHHHHHHHHHcCC-eEEEEcCC
Q 027382 93 LVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSLRA----------VPTEDAQEFAQRENL-FFMETSAL 160 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~~ 160 (224)
+|||++++++++.+. .|+..+..... +.|+++|+||+|+.+.+. +..+++.+++..+++ +++++||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 999999999999997 68888877654 799999999999865432 467888999999996 89999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027382 161 EATNVETAFLTVLTEIY 177 (224)
Q Consensus 161 ~~~~v~~~~~~i~~~i~ 177 (224)
+|.|++++|+++++.++
T Consensus 164 ~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCTTHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988763
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=1.5e-30 Score=195.21 Aligned_cols=166 Identities=17% Similarity=0.302 Sum_probs=130.9
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 87 (224)
..+.....+|+|+|.+|||||||+++|++..+.. .+.++.+..... ++...+.+.+|||||++.+..++..+++.
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET----FEKGRVAFTVFDMGGAKKFRGLWETYYDN 86 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE----EEETTEEEEEEEECCSGGGGGGGGGGCTT
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE----EEeCCEEEEEEECCCCHhHHHHHHHHHhc
Confidence 3467789999999999999999999999999877 677877744432 33566889999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCC--------CCCcEEEEEeCCCCCCCCCCCHHHHHHH------HHHcCCe
Q 027382 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHAD--------KNIVIMLIGNKCDLGSLRAVPTEDAQEF------AQRENLF 153 (224)
Q Consensus 88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~ilv~nK~D~~~~~~~~~~~~~~~------~~~~~~~ 153 (224)
+|++|+|||+++++++..+..|+..+.+... .+.|+++|+||+|+.+.. ..+++.+. ++..+++
T Consensus 87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~ 164 (199)
T 4bas_A 87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPFV 164 (199)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCEE
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCeeE
Confidence 9999999999999999999999888765421 278999999999997543 23333222 1446678
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382 154 FMETSALEATNVETAFLTVLTEIYRII 180 (224)
Q Consensus 154 ~~~~s~~~~~~v~~~~~~i~~~i~~~~ 180 (224)
++++||++|.|++++|++|.+.+.+..
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 165 IFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred EEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887654
No 83
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=3.9e-29 Score=185.74 Aligned_cols=160 Identities=23% Similarity=0.342 Sum_probs=130.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
+..++|+++|++|||||||++++.++. ...+.++.+... ..+.+ ..+.+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEH--RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEE--TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 578999999999999999999999888 666777766443 33434 3578999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEATNVE 166 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~ 166 (224)
+|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+.. ..+++.+... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999999888776543 2579999999999997532 3444444332 245679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027382 167 TAFLTVLTEIYRI 179 (224)
Q Consensus 167 ~~~~~i~~~i~~~ 179 (224)
++|+++.+.+.+.
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887543
No 84
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=1e-28 Score=184.58 Aligned_cols=169 Identities=66% Similarity=1.080 Sum_probs=150.7
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC
Q 027382 8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG 87 (224)
Q Consensus 8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 87 (224)
..++.+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.
T Consensus 22 ~~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~ 101 (191)
T 1oix_A 22 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 101 (191)
T ss_dssp --CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhc
Confidence 34556788999999999999999999999999888888998888888888899999999999999999888889999999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET 167 (224)
Q Consensus 88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 167 (224)
++++++|+|.++..+++.+..|+..+......+.|+++++||.|+.+.+....++++.++...++.++++|++++.|+++
T Consensus 102 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 102 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999998888888877665555789999999999977667778889999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027382 168 AFLTVLTEI 176 (224)
Q Consensus 168 ~~~~i~~~i 176 (224)
+|+.+.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
No 85
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=2.2e-29 Score=186.62 Aligned_cols=168 Identities=21% Similarity=0.330 Sum_probs=130.2
Q ss_pred cccCCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHh
Q 027382 4 LYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSA 83 (224)
Q Consensus 4 ~~~~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 83 (224)
.++.+....+..++|+++|++|||||||+++|.+..+ ..+.++.+.+. ..+.++ .+.+.+||+||++.+...+..
T Consensus 5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~ 79 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNI--KSVQSQ--GFKLNVWDIGGQRKIRPYWRS 79 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEE--EEEEET--TEEEEEEECSSCGGGHHHHHH
T ss_pred HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEE--EEEEEC--CEEEEEEECCCCHHHHHHHHH
Confidence 3444555556789999999999999999999998754 34455656432 334444 578999999999999999999
Q ss_pred HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEE
Q 027382 84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMET 157 (224)
Q Consensus 84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 157 (224)
+++.+|++++|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+.. ..+++.+... ..+++++++
T Consensus 80 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
T 1fzq_A 80 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSC 157 (181)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred HhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEc
Confidence 9999999999999999999999999887775542 3579999999999997533 3344433321 234579999
Q ss_pred cCCCCCCHHHHHHHHHHHHHH
Q 027382 158 SALEATNVETAFLTVLTEIYR 178 (224)
Q Consensus 158 s~~~~~~v~~~~~~i~~~i~~ 178 (224)
||++|.|++++|+++.+.+.+
T Consensus 158 Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 158 SALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CTTTCTTHHHHHHHHHHTC--
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999877643
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=5.4e-29 Score=185.71 Aligned_cols=162 Identities=21% Similarity=0.338 Sum_probs=129.7
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCC-CCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNE-FSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAV 89 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 89 (224)
.....++|+|+|.+|||||||+++|.+.. +...+.++.+. ....+.++ .+.+.+||+||++.+...+..+++.+|
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQ 92 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 34578999999999999999999999887 45556666553 33344443 478999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCC
Q 027382 90 GAMLVYDMTKRQSFDHMARWLDELRGHAD---KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALE 161 (224)
Q Consensus 90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~ 161 (224)
++|+|||+++++++..+..|+..+.+... .+.|+++|+||+|+.+ ....+++.++.. ..+++++++||++
T Consensus 93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIK 170 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 99999999999999999999888776543 4799999999999964 345666776664 2356799999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027382 162 ATNVETAFLTVLTEIYR 178 (224)
Q Consensus 162 ~~~v~~~~~~i~~~i~~ 178 (224)
|.|++++|++|.+.+.+
T Consensus 171 ~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 171 GEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TBTHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999887643
No 87
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=3.3e-29 Score=186.71 Aligned_cols=160 Identities=21% Similarity=0.368 Sum_probs=130.2
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
....+||+|+|.+|||||||+++|.+..+...+.++.+.++.. +....+.+.+||+||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE----EEETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE----EEeCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 4568999999999999999999999988877777877766543 233467899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEATNV 165 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v 165 (224)
|+|||+++++++..+..|+..+.+.. ..+.|+++|+||+|+.+. ....++.+... ..+++++++||++|.|+
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNI 172 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence 99999999999999999988776543 257999999999999653 23333333222 23457999999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 166 ETAFLTVLTEIY 177 (224)
Q Consensus 166 ~~~~~~i~~~i~ 177 (224)
+++|+++.+.+.
T Consensus 173 ~~l~~~l~~~~~ 184 (188)
T 1zd9_A 173 DITLQWLIQHSK 184 (188)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=5.1e-29 Score=186.09 Aligned_cols=156 Identities=21% Similarity=0.267 Sum_probs=127.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
...++|+++|++|||||||++++.++.+. .+.++.+.+ ...+.+++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 45679999999999999999999998764 455665554 34445554 88999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH------------cCCeEEEEcC
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR------------ENLFFMETSA 159 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~ 159 (224)
+|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+ .+..+++.+++.. .+++++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 9999999999999999988876543 25799999999999975 4567777776543 3457999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027382 160 LEATNVETAFLTVLTE 175 (224)
Q Consensus 160 ~~~~~v~~~~~~i~~~ 175 (224)
++|.|++++|+++.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998753
No 89
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=3.8e-30 Score=187.23 Aligned_cols=156 Identities=19% Similarity=0.382 Sum_probs=122.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEE
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 95 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~ 95 (224)
+||+++|++|||||||+++|.++.+.. +.++.+.. ...+ ....+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEE--ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEE--EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877653 45665532 2233 335578999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHHHHH
Q 027382 96 DMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEATNVETAF 169 (224)
Q Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~~~ 169 (224)
|+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ....++.+... ..+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 9999999999999988776542 357999999999999653 23333333221 134579999999999999999
Q ss_pred HHHHHHHHH
Q 027382 170 LTVLTEIYR 178 (224)
Q Consensus 170 ~~i~~~i~~ 178 (224)
+++.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999887643
No 90
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=3e-29 Score=188.53 Aligned_cols=156 Identities=21% Similarity=0.255 Sum_probs=122.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
...++|+++|++|||||||+++|.++.+. .+.++.+.+. ..+.+++ +.+.+|||||++.++..+..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 34579999999999999999999987764 4556655543 3444544 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----------------cCCeE
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-----------------ENLFF 154 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~ 154 (224)
+|||+++++++..+..|+..+.+.. ..+.|+++|+||+|+.. .+..+++++++.. .++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 9999999999999999998876643 35799999999999974 5667888887653 23579
Q ss_pred EEEcCCCCCCHHHHHHHHHHH
Q 027382 155 METSALEATNVETAFLTVLTE 175 (224)
Q Consensus 155 ~~~s~~~~~~v~~~~~~i~~~ 175 (224)
+++||++|.|++++|+++.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999998754
No 91
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=1.3e-29 Score=185.57 Aligned_cols=159 Identities=19% Similarity=0.330 Sum_probs=126.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
...++|+++|++|||||||+++|.++.+. .+.++.+... ..+.+. .+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 35689999999999999999999988764 3555655433 333343 678999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEcCCCCCCHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFA-----QRENLFFMETSALEATNVE 166 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~ 166 (224)
+|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.. ...++.+.. ...+++++++||++|.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 99999999999999998877765432 579999999999997533 233333322 2345679999999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 167 TAFLTVLTEIYR 178 (224)
Q Consensus 167 ~~~~~i~~~i~~ 178 (224)
++|+++.+.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999987753
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.6e-28 Score=182.69 Aligned_cols=157 Identities=21% Similarity=0.380 Sum_probs=125.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
...++|+++|.+|||||||+++|.++.+. .+.++.+.+.. .+.++ .+.+.+||+||++.+...+..+++++|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE--EIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCE--EEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 56799999999999999999999988775 55666654433 33343 488999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEATNVE 166 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~ 166 (224)
+|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+ ....+++.+... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999998887653 24799999999999974 334555555543 235689999999999999
Q ss_pred HHHHHHHHHH
Q 027382 167 TAFLTVLTEI 176 (224)
Q Consensus 167 ~~~~~i~~~i 176 (224)
++|+++++.+
T Consensus 167 ~l~~~l~~~~ 176 (187)
T 1zj6_A 167 QGLEWMMSRL 176 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998776
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=4.7e-29 Score=184.69 Aligned_cols=160 Identities=21% Similarity=0.368 Sum_probs=125.9
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCC
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGA 88 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 88 (224)
.......+||+|+|.+|||||||+++|.+..+ ..+.++.+.... .+.++ .+.+.+||+||++.+...+..+++.+
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVIN--NTRFLMWDIGGQESLRSSWNTYYTNT 89 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEET--TEEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhccC
Confidence 34556789999999999999999999999887 455566664443 33343 37899999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCC
Q 027382 89 VGAMLVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEA 162 (224)
Q Consensus 89 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~ 162 (224)
|++++|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+ ....+++.+... ..+++++++||++|
T Consensus 90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 167 (181)
T 2h17_A 90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTG 167 (181)
T ss_dssp CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc--CCCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 99999999999999999999888776543 35799999999999964 234555555442 23457999999999
Q ss_pred CCHHHHHHHHHHH
Q 027382 163 TNVETAFLTVLTE 175 (224)
Q Consensus 163 ~~v~~~~~~i~~~ 175 (224)
.|++++|++|++.
T Consensus 168 ~gi~~l~~~l~~~ 180 (181)
T 2h17_A 168 EGLCQGLEWMMSR 180 (181)
T ss_dssp BTHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhh
Confidence 9999999998753
No 94
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=7.2e-30 Score=189.69 Aligned_cols=163 Identities=20% Similarity=0.397 Sum_probs=121.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC--CCCCCccCCcceeeEEEEEEE---CCeEEEEEEEeCCChhhhhhhhHhHhcCCC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARN--EFSVDSKATIGVEFQTKTLSI---DHKTVKAQIWDTAGQERYRAVTSAYYRGAV 89 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 89 (224)
.+||+++|++|||||||+++|.+. .+...+.++.+.++....+.+ ++..+.+.+||++|++.+..++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 444556777777766655443 235778999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC---HHHHHHHHHHcCCe----EEEEcCCC
Q 027382 90 GAMLVYDMTKR-QSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP---TEDAQEFAQRENLF----FMETSALE 161 (224)
Q Consensus 90 ~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~s~~~ 161 (224)
++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+.+.+.+. .+..++++..++++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999997 57899999998887654 378999999999996533221 22345566667776 99999999
Q ss_pred CC-CHHHHHHHHHHHHHH
Q 027382 162 AT-NVETAFLTVLTEIYR 178 (224)
Q Consensus 162 ~~-~v~~~~~~i~~~i~~ 178 (224)
+. +++++++.+.+.+.+
T Consensus 161 ~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 161 ESDALAKLRKTIINESLN 178 (184)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHhc
Confidence 97 899999888876654
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=1.8e-29 Score=188.89 Aligned_cols=158 Identities=20% Similarity=0.382 Sum_probs=120.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
...+||+|+|++|||||||+++|.++.+. .+.+|.+. ....+.. ..+.+.+||+||++.+...+..+++.+|+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF--NVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTE--EEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCce--eEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 45799999999999999999999987764 34555552 2233333 4578999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEcCCCCCCHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQ-----RENLFFMETSALEATNVE 166 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~ 166 (224)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..+++++++||++|.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 9999999999999999988776543 257999999999999653 23333333221 134569999999999999
Q ss_pred HHHHHHHHHHH
Q 027382 167 TAFLTVLTEIY 177 (224)
Q Consensus 167 ~~~~~i~~~i~ 177 (224)
++|+++++.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999987663
No 96
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=6.4e-29 Score=183.94 Aligned_cols=160 Identities=20% Similarity=0.354 Sum_probs=126.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
+..++|+++|++|||||||++++.++.+ ..+.++.+... ..+.++ .+.+.+||+||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5689999999999999999999998776 45566666443 333343 478999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEcCCCCCCHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-----ENLFFMETSALEATNVE 166 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v~ 166 (224)
+|+|++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+. ...+++.+.... .+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999988887654 357999999999999653 345555554432 23479999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027382 167 TAFLTVLTEIYRI 179 (224)
Q Consensus 167 ~~~~~i~~~i~~~ 179 (224)
++|+++.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887654
No 97
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=2.4e-31 Score=200.67 Aligned_cols=163 Identities=28% Similarity=0.486 Sum_probs=137.2
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
....+||+++|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 35789999999999999999999998887766666654433 34455667778899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEE
Q 027382 92 MLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSLR------------AVPTEDAQEFAQRENL-FFMET 157 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 157 (224)
++|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.. .+..+++.++++..++ +++++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 9999999999999887 68877766543 79999999999996532 4556677888888887 89999
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q 027382 158 SALEATNVETAFLTVLTEI 176 (224)
Q Consensus 158 s~~~~~~v~~~~~~i~~~i 176 (224)
||++|.|++++|+.+++.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999988765
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=6.7e-28 Score=194.49 Aligned_cols=164 Identities=27% Similarity=0.478 Sum_probs=143.6
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
....++|+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 230 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 230 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEE
Confidence 45669999999999999999999999888777777765444 45566788899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEE
Q 027382 92 MLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL------------RAVPTEDAQEFAQRENL-FFMET 157 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 157 (224)
++|||++++.++..+. .|+..+..... +.|+++|+||+|+.+. +.+..+++.++++..++ +++++
T Consensus 231 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 231 LICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 9999999999999987 68888776554 7999999999998543 56788899999999997 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q 027382 158 SALEATNVETAFLTVLTEIY 177 (224)
Q Consensus 158 s~~~~~~v~~~~~~i~~~i~ 177 (224)
||++|.|++++|+.+++.++
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999998775
No 99
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=1.1e-29 Score=189.21 Aligned_cols=159 Identities=19% Similarity=0.323 Sum_probs=126.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
+..+||+++|++|||||||+++|.++.+. .+.++.+... ..+.. ..+.+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNL--ETLQY--KNISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCE--EEEEE--TTEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEE--EEEEE--CCEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 56799999999999999999999887764 3556655433 33334 3578999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEcCCCCCCHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFA-----QRENLFFMETSALEATNVE 166 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~ 166 (224)
+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ...++.+.. ...+++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999998887776543 2579999999999996532 233333322 2234579999999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 167 TAFLTVLTEIYR 178 (224)
Q Consensus 167 ~~~~~i~~~i~~ 178 (224)
++|+++.+.+.+
T Consensus 173 ~l~~~l~~~i~~ 184 (189)
T 2x77_A 173 EGMDWLVERLRE 184 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 100
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=1.2e-28 Score=184.87 Aligned_cols=163 Identities=20% Similarity=0.217 Sum_probs=121.8
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeE--EEEEEE-CCeEEEEEEEeCCChhhhhhhh---H
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQ--TKTLSI-DHKTVKAQIWDTAGQERYRAVT---S 82 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~l~D~~G~~~~~~~~---~ 82 (224)
..+.+..+||+++|++|||||||++++.+.... . ++.+.+.. .....+ ++..+.+.+||+||++.+.... .
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 90 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE 90 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence 345678899999999999999999988875332 2 22233222 222233 2566899999999999887766 8
Q ss_pred hHhcCCCEEEEEEeCCCh--hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC-------CCCCCHHHHHHHHH----H
Q 027382 83 AYYRGAVGAMLVYDMTKR--QSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS-------LRAVPTEDAQEFAQ----R 149 (224)
Q Consensus 83 ~~~~~~d~vi~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-------~~~~~~~~~~~~~~----~ 149 (224)
.+++.+|++|+|||++++ +++..+..|+..+.... .+.|+++|+||+|+.+ .+.+...+.++++. .
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 999999999999999997 77777777877765433 4799999999999754 12344455677777 6
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 150 ENLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 150 ~~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
.+++|+++||++ .|++++|..+++.+
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CCcceEEEEech-hhHHHHHHHHHHHh
Confidence 778999999999 99999999998764
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=1.1e-27 Score=181.85 Aligned_cols=160 Identities=16% Similarity=0.197 Sum_probs=113.8
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCe-EEEEEEEeCCChhhhhh-hhHhHhcCC
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK-TVKAQIWDTAGQERYRA-VTSAYYRGA 88 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~~~~-~~~~~~~~~ 88 (224)
.....+||+++|++|||||||+++|.+..+...+.++ +..... +.+++. .+.+.+|||||++.+.. ++..+++.+
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 79 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSA 79 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhC
Confidence 3456799999999999999999999998876666543 333333 445443 68899999999999987 788899999
Q ss_pred CEEEEEEeCCChh-hHHHHHHHH-HHHHh--cCCCCCcEEEEEeCCCCCCCCCCCHHHHHH----HHH------------
Q 027382 89 VGAMLVYDMTKRQ-SFDHMARWL-DELRG--HADKNIVIMLIGNKCDLGSLRAVPTEDAQE----FAQ------------ 148 (224)
Q Consensus 89 d~vi~v~d~~~~~-s~~~~~~~~-~~~~~--~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~----~~~------------ 148 (224)
|++|+|||+++.. ++.....++ ..+.. ....+.|+++|+||+|+.+... .++..+ ...
T Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~s~ 157 (214)
T 2fh5_B 80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS--AKLIQQQLEKELNTLRVTRSAAPST 157 (214)
T ss_dssp EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC--HHHHHHHHHHHHHHHHHHCC-----
T ss_pred CEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc--HHHHHHHHHHHHHHHhccchhcccc
Confidence 9999999999854 455555544 33333 1234799999999999975433 222211 111
Q ss_pred ---------------------Hc--CCeEEEEcCCCC------CCHHHHHHHHHHH
Q 027382 149 ---------------------RE--NLFFMETSALEA------TNVETAFLTVLTE 175 (224)
Q Consensus 149 ---------------------~~--~~~~~~~s~~~~------~~v~~~~~~i~~~ 175 (224)
.. +++|++|||++| .|++++|++|.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 158 LDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999998764
No 102
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=1.2e-26 Score=177.99 Aligned_cols=170 Identities=18% Similarity=0.163 Sum_probs=120.7
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh------hhh---hh
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ------ERY---RA 79 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~------~~~---~~ 79 (224)
+.-.+..++|+|+|.+|||||||+++|++..+.....+....+........ ....+.+|||||. +.. ..
T Consensus 23 P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 23 PSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH--KLNKYQIIDTPGLLDRAFENRNTIEMT 100 (228)
T ss_dssp CSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE--TTEEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec--CCCeEEEEECCCCcCcccchhhhHHHH
Confidence 333456799999999999999999999998765333222222222222222 3367999999998 321 12
Q ss_pred hhHhHhcCCCEEEEEEeCCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHH---HHHHHHHHcC--C
Q 027382 80 VTSAYYRGAVGAMLVYDMTKRQSFD--HMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTE---DAQEFAQREN--L 152 (224)
Q Consensus 80 ~~~~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~---~~~~~~~~~~--~ 152 (224)
.+..++..+|++|+|||++++.++. ....|+..+.... .+.|+++|+||+|+.+.+.+... .+++++...+ +
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPI 179 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCE
T ss_pred HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCc
Confidence 2345578899999999999987754 2345666665532 37999999999999776666554 4667777777 7
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 027382 153 FFMETSALEATNVETAFLTVLTEIYRIIS 181 (224)
Q Consensus 153 ~~~~~s~~~~~~v~~~~~~i~~~i~~~~~ 181 (224)
+++++||++|.|++++|++|.+.+.+...
T Consensus 180 ~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 180 KFSSFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999998876643
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=4e-27 Score=171.82 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=114.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh------hhhHhHhc--
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR------AVTSAYYR-- 86 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~-- 86 (224)
.++|+++|++|||||||+++|.+......+.++.+.+.....+.+++ ..+.+|||||+..+. .+...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 47999999999999999999998776555545444444444454543 579999999987653 34455664
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382 87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 166 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 166 (224)
.+|++++|+|+++.+. ...|+..+.+. +.|+++|+||+|+...+.+.. ++++++..++++++++||++|.|++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 8999999999998554 34466666542 689999999999854333332 4677888889999999999999999
Q ss_pred HHHHHHHHHH
Q 027382 167 TAFLTVLTEI 176 (224)
Q Consensus 167 ~~~~~i~~~i 176 (224)
++|+++.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988654
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.9e-28 Score=191.09 Aligned_cols=165 Identities=28% Similarity=0.423 Sum_probs=120.8
Q ss_pred cccceeEEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCccCCc-ceeeEEEE--------------EEECCe
Q 027382 10 QKIDYVFKVVLIGDS---------AVGKSQLLARFAR---NEFSVDSKATI-GVEFQTKT--------------LSIDHK 62 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~ 62 (224)
......+||+|+|.+ |||||||+++|.+ ..+...+.++. +.++.... ..+++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 345678999999999 9999999999998 44545555543 22222111 113567
Q ss_pred EEEEEEEe-----------------------CCChhhhhhhhHhHhc---------------------CCCEEEEEEeCC
Q 027382 63 TVKAQIWD-----------------------TAGQERYRAVTSAYYR---------------------GAVGAMLVYDMT 98 (224)
Q Consensus 63 ~~~~~l~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~vi~v~d~~ 98 (224)
.+.+.+|| ++|++.+..++..++. ++|++|+|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 78899999 5556666666666666 799999999999
Q ss_pred Ch--hhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382 99 KR--QSFDHMARWLDELRGH-ADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-ENLFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 99 ~~--~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
++ ++++.+..|+..+.+. ...++|+++|+||+|+.+.+.+ +++++++.. .+++++++||++|.|++++|++|++
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 98 9999999999888765 2347999999999999643332 567788876 4789999999999999999999987
Q ss_pred HH
Q 027382 175 EI 176 (224)
Q Consensus 175 ~i 176 (224)
.+
T Consensus 252 ~l 253 (255)
T 3c5h_A 252 LI 253 (255)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=1.9e-26 Score=184.24 Aligned_cols=159 Identities=19% Similarity=0.273 Sum_probs=125.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC---CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhh-----hhhhHhHh
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFS---VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERY-----RAVTSAYY 85 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-----~~~~~~~~ 85 (224)
..+||+++|.+|||||||+++++++... ..+.+|.+..... ..+.+ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999987432 2344555544443 33433 688999999999988 67889999
Q ss_pred cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCC--CCC----CCHHHHHHHHHHcC---CeE
Q 027382 86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHA--DKNIVIMLIGNKCDLGS--LRA----VPTEDAQEFAQREN---LFF 154 (224)
Q Consensus 86 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 154 (224)
+++|++|+|||++++++++.+..|...+.... ..++|+++|+||+|+.+ .+. +..+++++++..++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999998877755544322 34799999999999975 332 44577888999887 689
Q ss_pred EEEcCCCCCCHHHHHHHHHHHH
Q 027382 155 METSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 155 ~~~s~~~~~~v~~~~~~i~~~i 176 (224)
+++||++ .++.++|..++..+
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTT
T ss_pred EEeeecC-ChHHHHHHHHHHHH
Confidence 9999999 89999998887654
No 106
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.94 E-value=2.5e-26 Score=169.15 Aligned_cols=159 Identities=15% Similarity=0.156 Sum_probs=119.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
.+..++|+++|++|||||||+++|.+..+...+.++.+.+.....+.+++ ..+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 35678999999999999999999999888776666655555555555655 4567999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC---------CeEEEEcCCCC
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN---------LFFMETSALEA 162 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~ 162 (224)
++|+|++++..... .+++..+.. .+.|+++|+||+|+.+. ..++........+ ++++++||++|
T Consensus 83 i~v~d~~~~~~~~~-~~~l~~~~~---~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 83 ILVVAADDGVMPQT-VEAINHAKA---ANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp EEEEETTCCCCHHH-HHHHHHHGG---GSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred EEEEECCCCCcHHH-HHHHHHHHh---CCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 99999988322221 122222322 36899999999999652 3344444433322 47999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027382 163 TNVETAFLTVLTEIYRI 179 (224)
Q Consensus 163 ~~v~~~~~~i~~~i~~~ 179 (224)
.|++++|+++++.+...
T Consensus 156 ~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 156 EGLDHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhhhhh
Confidence 99999999998776543
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=186.05 Aligned_cols=157 Identities=19% Similarity=0.358 Sum_probs=119.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAML 93 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 93 (224)
..+||+|+|.+|||||||+++|.+..+... .+|.+..... +....+.+.+|||||++.+..++..+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~----~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEE----EEETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEE----EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 467999999999999999999998876433 3454444332 33355789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEcCCCCCCHHH
Q 027382 94 VYDMTKRQSFDHMARWLDELRGHA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-----ENLFFMETSALEATNVET 167 (224)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v~~ 167 (224)
|||+++++++..+..|+..+.... ..++|+++|+||+|+.+.. ..+++...... .+++++++||++|.|+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 999999999999988877665543 3579999999999997533 33444333322 235699999999999999
Q ss_pred HHHHHHHHHH
Q 027382 168 AFLTVLTEIY 177 (224)
Q Consensus 168 ~~~~i~~~i~ 177 (224)
+|+.|++.+.
T Consensus 317 l~~~l~~~l~ 326 (329)
T 3o47_A 317 GLDWLSNQLR 326 (329)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 108
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=3.6e-26 Score=170.84 Aligned_cols=159 Identities=15% Similarity=0.162 Sum_probs=110.4
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC----------hhhhhhh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG----------QERYRAV 80 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~ 80 (224)
+.+..++|+|+|.+|||||||+++|++..+...+.++.+.+.......++. .+.+||||| ++.+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 345789999999999999999999999875555555555555555444543 589999999 7888888
Q ss_pred hHhHhcCC---CEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCH--HHHHH-HHHHcCCeE
Q 027382 81 TSAYYRGA---VGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPT--EDAQE-FAQRENLFF 154 (224)
Q Consensus 81 ~~~~~~~~---d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~ 154 (224)
+..+++.+ |++++|+|++++.+..... ++..+.. .+.|+++|+||+|+.+...+.. +++.+ +....+.++
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 88888777 9999999999876665432 2222332 3689999999999975443221 22222 222345789
Q ss_pred EEEcCCCCCCHHHHHHHHHHHH
Q 027382 155 METSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 155 ~~~s~~~~~~v~~~~~~i~~~i 176 (224)
+++||++|.|++++|+++.+.+
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 109
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=2.1e-26 Score=171.31 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=116.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC-----------hhhhhhhhHhH
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG-----------QERYRAVTSAY 84 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~~~~~~ 84 (224)
+||+++|++|||||||+++|.+..+...+.++.+ .......+. .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT--RKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT--TSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc--ceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999887766665433 333333333 689999999 77788888888
Q ss_pred hcC-CCEEEEEEeCCChhhHHHH-HHHHHH---------HHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 027382 85 YRG-AVGAMLVYDMTKRQSFDHM-ARWLDE---------LRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLF 153 (224)
Q Consensus 85 ~~~-~d~vi~v~d~~~~~s~~~~-~~~~~~---------~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 153 (224)
++. ++++++|+++.+..++..+ ..|... +......+.|+++|+||+|+.+.. .+++++++..++++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 776 6666666666666666655 445431 111122479999999999997533 56788888888864
Q ss_pred -------EEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382 154 -------FMETSALEATNVETAFLTVLTEIYRII 180 (224)
Q Consensus 154 -------~~~~s~~~~~~v~~~~~~i~~~i~~~~ 180 (224)
++++||++|.|++++|+++.+.+.+..
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 799999999999999999998886544
No 110
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=1.9e-27 Score=189.05 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=119.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC---CccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh---hhHhHhcCCCE
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSV---DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA---VTSAYYRGAVG 90 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~~~~~~~~~d~ 90 (224)
||+++|+.|||||||++++.++..+. .+.+|.|.++.. ++ ..+.+++|||+|++++.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999988664432 245666666653 22 348899999999999864 46899999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC-------CCCCHHHHHHHHHH----cCCeEEEE
Q 027382 91 AMLVYDMTKR--QSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSL-------RAVPTEDAQEFAQR----ENLFFMET 157 (224)
Q Consensus 91 vi~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 157 (224)
+|+|||++++ +....+.+|+..+.+.. +++|+++++||+|+..+ +.+..++++++++. +++.|++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 34444444555554433 47999999999999653 23555566777775 67899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHH
Q 027382 158 SALEATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 158 s~~~~~~v~~~~~~i~~~i~~~ 179 (224)
||++ .++.++|..+++.+.+.
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTT
T ss_pred ccCC-CcHHHHHHHHHHHHHhh
Confidence 9998 58999999998876544
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=1.3e-25 Score=190.60 Aligned_cols=159 Identities=21% Similarity=0.403 Sum_probs=126.9
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGA 91 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 91 (224)
....++|+|+|.+|||||||+++|.+..+. .+.+|.+.++.. +....+.+.+|||||++.+..++..+++.+|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEE----EESSSCEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEE----EEeCCEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 345799999999999999999999998854 445665555443 334567899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEcCCCCCCH
Q 027382 92 MLVYDMTKRQSFDHMARWLDELRGHAD-KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR-----ENLFFMETSALEATNV 165 (224)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v 165 (224)
|+|||+++++++..+..|+..+.+... .++|+++|+||+|+.+. ....++.+.... .+++++++||++|.|+
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 471 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 471 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTH
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCH
Confidence 999999999999999998887765432 57999999999999753 233444333221 2346999999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 166 ETAFLTVLTEIY 177 (224)
Q Consensus 166 ~~~~~~i~~~i~ 177 (224)
+++|++|.+.+.
T Consensus 472 ~~l~~~l~~~~~ 483 (497)
T 3lvq_E 472 YEGLTWLTSNYK 483 (497)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH
Confidence 999999987663
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=7.9e-26 Score=168.02 Aligned_cols=157 Identities=16% Similarity=0.176 Sum_probs=120.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh------hhhHhHhc-
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR------AVTSAYYR- 86 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~- 86 (224)
..++|+++|++|||||||+++|.+......+.++.+.+.....+..+ ...+.+|||||+..+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 56899999999999999999999876655555554445555555554 4789999999987663 34556664
Q ss_pred -CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382 87 -GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 165 (224)
Q Consensus 87 -~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 165 (224)
.+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+...+.+. .+++++++..+++++++||+++.|+
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence 5999999999976 4455567666654 368999999999986444333 3577888888999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027382 166 ETAFLTVLTEIYRI 179 (224)
Q Consensus 166 ~~~~~~i~~~i~~~ 179 (224)
+++|+++++.+.+.
T Consensus 157 ~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 157 EELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998877443
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=1.7e-25 Score=161.90 Aligned_cols=150 Identities=18% Similarity=0.179 Sum_probs=105.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSAYYRG 87 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~ 87 (224)
.||+++|++|+|||||+++|.+.... ....++.+.+.....+..++ ..+.+||+||... +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988753 22223323344444454544 3788999999876 45567778899
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHH
Q 027382 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVE 166 (224)
Q Consensus 88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~ 166 (224)
+|++++|+|++++.+... ..+...+.+ .+.|+++|+||+|+.+. .+++.+++ +.++ +++++||++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~----~~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKH----ELYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGG----GGGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccc----hHhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999998533321 112222222 26899999999999653 23445555 6677 79999999999999
Q ss_pred HHHHHHHHHH
Q 027382 167 TAFLTVLTEI 176 (224)
Q Consensus 167 ~~~~~i~~~i 176 (224)
++|+++.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999988753
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=5.8e-26 Score=166.83 Aligned_cols=153 Identities=22% Similarity=0.224 Sum_probs=111.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh----h--h--hHhH
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR----A--V--TSAY 84 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~--~--~~~~ 84 (224)
..++|+++|.+|||||||+++|.+.... ....++.+.+.....+.+++ ..+.+|||||...+. . . ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4579999999999999999999987643 22233334445555566655 357899999975321 1 1 1245
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 027382 85 YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATN 164 (224)
Q Consensus 85 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (224)
++.+|++++|||++++.++. ...|+..+.+....++|+++|+||+|+.+... .++...+.+++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 78999999999999987765 34677777665555799999999999853211 11223466899999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 165 VETAFLTVLTEI 176 (224)
Q Consensus 165 v~~~~~~i~~~i 176 (224)
++++|+++.+.+
T Consensus 153 v~~l~~~l~~~~ 164 (172)
T 2gj8_A 153 VDVLRNHLKQSM 164 (172)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=3.7e-25 Score=172.54 Aligned_cols=155 Identities=18% Similarity=0.128 Sum_probs=117.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh------hhHhHh-
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA------VTSAYY- 85 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~- 85 (224)
...++|+++|.+|||||||+|+|.+........+. .++......+......+.+||+||...+.. +...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg--~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPG--VTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTT--SCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCC--ceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 46789999999999999999999998765444443 344444433433457899999999876643 234555
Q ss_pred -cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCC
Q 027382 86 -RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATN 164 (224)
Q Consensus 86 -~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (224)
..+|++++|+|+++.++.. .|...+.+ .+.|+++++||+|+.+.+.+. .+.+++++.++++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcC
Confidence 5899999999999865543 34444444 269999999999986544443 247788888999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 165 VETAFLTVLTEI 176 (224)
Q Consensus 165 v~~~~~~i~~~i 176 (224)
++++|+.+.+.+
T Consensus 154 i~el~~~i~~~~ 165 (258)
T 3a1s_A 154 LEELKEKIVEYA 165 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 116
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=5.7e-25 Score=175.77 Aligned_cols=163 Identities=18% Similarity=0.127 Sum_probs=124.8
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCe-EEEEEEEeCCChhh----------hh
Q 027382 10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK-TVKAQIWDTAGQER----------YR 78 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~----------~~ 78 (224)
.+++..-.|+++|.+|||||||+|+|++..+......+ +.+.......+... ...+.+|||||... +.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~-~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKA-GTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSS-CCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCC-CceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence 35678889999999999999999999998875332222 22222222223233 67899999999743 34
Q ss_pred hhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEE
Q 027382 79 AVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN--LFFME 156 (224)
Q Consensus 79 ~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~ 156 (224)
.....+++.+|++++|+|++++.+......|+..+... +.|+++|+||+|+..........+.++....+ .++++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 66778889999999999999988888777777777653 68999999999997434455667778888875 67999
Q ss_pred EcCCCCCCHHHHHHHHHHHH
Q 027382 157 TSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 157 ~s~~~~~~v~~~~~~i~~~i 176 (224)
+||++|.|++++|+.+.+.+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYL 180 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHS
T ss_pred EeCCCCCCHHHHHHHHHHhC
Confidence 99999999999999988766
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=5.1e-26 Score=194.58 Aligned_cols=163 Identities=21% Similarity=0.264 Sum_probs=124.2
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEE--------EECCeEEEEEEEeCCChhhhhhhhHh
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTL--------SIDHKTVKAQIWDTAGQERYRAVTSA 83 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~D~~G~~~~~~~~~~ 83 (224)
....+||+++|.+|||||||+++|.+..+...+.++.+.++..... ..++..+.+.+||+||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 4577999999999999999999999998887777887777665421 11234688999999999999999999
Q ss_pred HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382 84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT 163 (224)
Q Consensus 84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (224)
+++.+|++|+|+|+++. +....|+..+..... +.|+++|+||+|+.+.+.+..+++++++...+++++++||++|.
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 99999999999999875 445667777766543 68999999999998777788888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027382 164 NVETAFLTVLTEIYR 178 (224)
Q Consensus 164 ~v~~~~~~i~~~i~~ 178 (224)
|++++|..+.+.+.+
T Consensus 194 gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 194 GVESIAKSLKSAVLH 208 (535)
T ss_dssp -CTTHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999887754
No 118
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=2.2e-25 Score=174.93 Aligned_cols=153 Identities=19% Similarity=0.185 Sum_probs=116.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh------hhhHhHhc-
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR------AVTSAYYR- 86 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~- 86 (224)
..++|+++|.+|||||||+|+|.+........+ |.++......+.. ...+.+|||||...+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 357999999999999999999998765444444 4445445555665 6789999999987664 45566665
Q ss_pred -CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382 87 -GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 165 (224)
Q Consensus 87 -~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 165 (224)
.+|++++|+|+++.+.. ..|...+.+ .+.|+++++||+|+...+.+. .+...++..++++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999986544 344444444 379999999999986433333 3567888888999999999999999
Q ss_pred HHHHHHHHHHH
Q 027382 166 ETAFLTVLTEI 176 (224)
Q Consensus 166 ~~~~~~i~~~i 176 (224)
+++|+.+.+.+
T Consensus 152 ~el~~~i~~~~ 162 (272)
T 3b1v_A 152 DQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.92 E-value=9.5e-25 Score=162.82 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=114.9
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC----------hhhhhhh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG----------QERYRAV 80 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~ 80 (224)
+....++|+|+|++|||||||+++|++... ..+.++.+.+........+. .+.+||||| ++.+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence 345678999999999999999999999874 33344445554444433333 477999999 7778888
Q ss_pred hHhHhcCC---CEEEEEEeCCChhh--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHcC-C
Q 027382 81 TSAYYRGA---VGAMLVYDMTKRQS--FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--VPTEDAQEFAQREN-L 152 (224)
Q Consensus 81 ~~~~~~~~---d~vi~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~-~ 152 (224)
+..+++.+ |++++|+|+++..+ ...+..|+... +.|+++|+||+|+.+... ...+++++++...+ +
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY 168 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCC
Confidence 88888766 99999999987533 33333443322 689999999999864322 22345566666644 6
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382 153 FFMETSALEATNVETAFLTVLTEIY 177 (224)
Q Consensus 153 ~~~~~s~~~~~~v~~~~~~i~~~i~ 177 (224)
+++++||++|.|++++|+++.+.+.
T Consensus 169 ~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 169 TIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ceEEEecCCCCCHHHHHHHHHHHhh
Confidence 8999999999999999999988764
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=3.8e-25 Score=172.28 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=114.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh----------hhHhHh
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA----------VTSAYY 85 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~~~ 85 (224)
.+|+++|.+|||||||+|+|.+........++.+.+.....+..++ ..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 3799999999999999999999876655556555555555555544 4899999999765543 556666
Q ss_pred --cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382 86 --RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT 163 (224)
Q Consensus 86 --~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (224)
..+|++|+|+|+++.+....+..+ +.+ .+.|+++|+||+|+.+.+... .....+....+++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~~---~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LFE---LGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HTT---SCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HHH---cCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence 899999999999986655444333 332 369999999999985433322 23566778889999999999999
Q ss_pred CHHHHHHHHHHH
Q 027382 164 NVETAFLTVLTE 175 (224)
Q Consensus 164 ~v~~~~~~i~~~ 175 (224)
|++++|+.+.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999998764
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=1.5e-24 Score=165.51 Aligned_cols=164 Identities=17% Similarity=0.177 Sum_probs=112.2
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC-CeEEEEEEEeCCC----------hhhhhhh
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID-HKTVKAQIWDTAG----------QERYRAV 80 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G----------~~~~~~~ 80 (224)
....++|+|+|.+|+|||||+++|++...........+.+.......+. .....+.+||||| ++.+...
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 4567899999999999999999999986322222222344444444444 4557899999999 4555666
Q ss_pred hHhHhcC---CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHHH------
Q 027382 81 TSAYYRG---AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTEDAQEFAQR------ 149 (224)
Q Consensus 81 ~~~~~~~---~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~------ 149 (224)
+..++.. +|++++|+|++++.+ .....++..+.. .+.|+++|+||+|+.+.... ..+++.+....
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 6677665 788999999987433 222344555544 36899999999998642221 11222233333
Q ss_pred -cCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382 150 -ENLFFMETSALEATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 150 -~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~ 179 (224)
.+.+++++||++|.|++++|++|.+.+...
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 456799999999999999999998877443
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=4.6e-24 Score=167.71 Aligned_cols=155 Identities=18% Similarity=0.124 Sum_probs=116.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh------hhHhHh--c
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA------VTSAYY--R 86 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~--~ 86 (224)
.++|+++|++|||||||+++|.+........++.+.+.....+...+ ..+.+||+||...+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 57999999999999999999999877555666655555555555544 4599999999776654 455666 6
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHH
Q 027382 87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVE 166 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 166 (224)
.+|++++|+|+++.+. ...|...+.+.. ..|+++|+||+|+.+.+.... +...+.+..+++++++|+++|.|++
T Consensus 81 ~~d~vi~v~D~~~~~~---~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 81 NADVIVDIVDSTCLMR---NLFLTLELFEME--VKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp CCSEEEEEEEGGGHHH---HHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTHH
T ss_pred CCcEEEEEecCCcchh---hHHHHHHHHhcC--CCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCHH
Confidence 8999999999998532 233333333331 289999999999753222222 2677888889999999999999999
Q ss_pred HHHHHHHHHHH
Q 027382 167 TAFLTVLTEIY 177 (224)
Q Consensus 167 ~~~~~i~~~i~ 177 (224)
++|..+.+.+.
T Consensus 155 ~l~~~i~~~~~ 165 (271)
T 3k53_A 155 ELKRMIALMAE 165 (271)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 123
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=2.6e-24 Score=177.82 Aligned_cols=189 Identities=17% Similarity=0.140 Sum_probs=135.0
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh-------hH
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV-------TS 82 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~~ 82 (224)
+....++|+|+|+.|+|||||+++|++..+. ....+..+.+.....+.+... ..+.+|||||++.+... ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence 4567899999999999999999999988763 222333234444445555433 27899999998766543 45
Q ss_pred hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 027382 83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEA 162 (224)
Q Consensus 83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 162 (224)
.++..+|++|+|+|+...+ ....|+..+.+. ++|+++|+||+|+.+.... +..+++...++++++++||++|
T Consensus 109 ~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg 180 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK 180 (423)
T ss_dssp HHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred HHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence 6889999999999994333 335566666654 6899999999999765543 5667777778899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcccCCcCccccccCCccCCCCeeeeecCCCCCCCCC
Q 027382 163 TNVETAFLTVLTEIYRIISKKSLTANDEHDVAGNSNLLKGTRIIVPGQDQNSASK 217 (224)
Q Consensus 163 ~~v~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (224)
.|++++|+.+.+.+. .. .+..+.+....+++..++..+.+....+.
T Consensus 181 ~gI~eL~~~L~~~l~--------~~-~e~~l~~dLv~~gd~v~lv~pid~~~pkg 226 (423)
T 3qq5_A 181 KGFDDIGKTISEILP--------GD-EEIPYLGDLIDGGDLVILVVPIDLGAPKG 226 (423)
T ss_dssp TSTTTHHHHHHHHSC--------CC-CCCCSCSCCCCTTCCEEEECCCSCCSSTT
T ss_pred CCHHHHHHHHHHhhh--------hh-ccCcchhhccccCceEEEEeeccccCcCC
Confidence 999999999887662 12 45566777788888888888887766544
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=4.4e-25 Score=167.92 Aligned_cols=144 Identities=18% Similarity=0.265 Sum_probs=106.9
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC---ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC-
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVD---SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG- 87 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~- 87 (224)
....++|+++|++|+|||||+++|.+..+... +.++.+. ....+.+.+||+||++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET---------TGGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE---------EeeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 55789999999999999999999999876432 2232221 2245678999999999998888888877
Q ss_pred ---CCEEEEEEeCC-ChhhHHHHHHHHHHHHhc----CCCCCcEEEEEeCCCCCCCCCCC------HHHHHHHHHHcCCe
Q 027382 88 ---AVGAMLVYDMT-KRQSFDHMARWLDELRGH----ADKNIVIMLIGNKCDLGSLRAVP------TEDAQEFAQRENLF 153 (224)
Q Consensus 88 ---~d~vi~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ilv~nK~D~~~~~~~~------~~~~~~~~~~~~~~ 153 (224)
+|++|+|+|++ +++++..+..|+..+... ...+.|+++|+||+|+.+...+. .+++..++...+++
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888988888888776554 33579999999999997655433 34566777777788
Q ss_pred EEEEcCCCCCC
Q 027382 154 FMETSALEATN 164 (224)
Q Consensus 154 ~~~~s~~~~~~ 164 (224)
++++|+++|.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 99999998875
No 125
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=1.5e-24 Score=170.69 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=112.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh----------hhhHhH
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR----------AVTSAY 84 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~~ 84 (224)
.++|+++|.+|||||||+|+|.+........+..+.+.....+.. ....+.+|||||...+. .....+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC--SSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe--CCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 589999999999999999999998765555554444444444444 34568899999976654 223333
Q ss_pred h--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCC
Q 027382 85 Y--RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEA 162 (224)
Q Consensus 85 ~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 162 (224)
+ ..+|++++|+|+++.+....+..++. +. ++|+++|+||+|+.+..... ...+.+.+..+++++++||++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQLL---EL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHHHH---HH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHHHH---hc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence 3 79999999999998665544444433 32 69999999999985433321 2356778888999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027382 163 TNVETAFLTVLTEI 176 (224)
Q Consensus 163 ~~v~~~~~~i~~~i 176 (224)
.|++++|+.+.+.+
T Consensus 154 ~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 154 RGIEALKLAIDRYK 167 (274)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999998887544
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=2.2e-23 Score=174.11 Aligned_cols=161 Identities=19% Similarity=0.185 Sum_probs=114.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCCh----------hhhhhhh
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ----------ERYRAVT 81 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~ 81 (224)
+..++|+++|.+|||||||+|+|++.... ....+..+.+.....+..++. .+.+|||||+ +.+....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 46799999999999999999999987754 233333233333334444443 5899999997 4454443
Q ss_pred H-hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHH-HHH----cCCeEE
Q 027382 82 S-AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF-AQR----ENLFFM 155 (224)
Q Consensus 82 ~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~-~~~----~~~~~~ 155 (224)
. .+++.+|++++|+|++++.+.... .|+..+.+ .+.|+++|+||+|+.+......++..+. ... .+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 3 478899999999999997777654 46666554 3699999999999976555444444332 222 367899
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHH
Q 027382 156 ETSALEATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 156 ~~s~~~~~~v~~~~~~i~~~i~~~ 179 (224)
++||++|.|++++|..+.+.+.+.
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHh
Confidence 999999999999999998777554
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=1.3e-22 Score=165.35 Aligned_cols=163 Identities=17% Similarity=0.214 Sum_probs=120.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh---------hhhHh
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR---------AVTSA 83 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~ 83 (224)
...++|+++|.+|||||||+++|.+........+..+.......+.. ....+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED--GYFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE--TTEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe--cCceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 56789999999999999999999987743332232222222222222 24678999999964321 22234
Q ss_pred HhcCCCEEEEEEeCCChh--hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCC
Q 027382 84 YYRGAVGAMLVYDMTKRQ--SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALE 161 (224)
Q Consensus 84 ~~~~~d~vi~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 161 (224)
+...+|++++|+|++++. ++.....|+..+..... +.|+++|+||+|+.+... .+++.+++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence 456799999999998876 67777888888776544 799999999999964322 2456667777888999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 027382 162 ATNVETAFLTVLTEIYRII 180 (224)
Q Consensus 162 ~~~v~~~~~~i~~~i~~~~ 180 (224)
|+|++++|+++.+.+....
T Consensus 320 g~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp TBTHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHH
Confidence 9999999999998886543
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=4.3e-23 Score=173.23 Aligned_cols=163 Identities=18% Similarity=0.179 Sum_probs=119.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCC----------hhhhhhh
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG----------QERYRAV 80 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~ 80 (224)
.+..++|+++|.+|+|||||+++|++.... ....++.+.+.....+..++. .+.+||||| ++.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 356799999999999999999999976532 233333233333344445443 789999999 6666665
Q ss_pred hH-hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCeE
Q 027382 81 TS-AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE-----NLFF 154 (224)
Q Consensus 81 ~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~ 154 (224)
.. .+++.+|++++|+|++++.. +....|+..+.+ .+.|+++|+||+|+.+.+....+++.+.+.+. ++++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence 54 47899999999999987433 223445555544 36999999999999876767677777777664 5789
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382 155 METSALEATNVETAFLTVLTEIYRII 180 (224)
Q Consensus 155 ~~~s~~~~~~v~~~~~~i~~~i~~~~ 180 (224)
+++||++|.|++++|..+.+.+.+..
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 99999999999999999998775543
No 129
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=2.4e-23 Score=165.62 Aligned_cols=155 Identities=17% Similarity=0.164 Sum_probs=107.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccCCcceeeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhHh
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVD-SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER--------YRAVTSA 83 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~ 83 (224)
-...+|+++|.+|||||||+|+|++..+... ..+. ++.......+......+.+|||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~--tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQ--TTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSC--CCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCC--ceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 3456799999999999999999999877532 2222 111111111223467899999999654 4556677
Q ss_pred HhcCCCEEEEEEeCCChhhHHHHHHHH-HHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHc-C-CeEEEEcCC
Q 027382 84 YYRGAVGAMLVYDMTKRQSFDHMARWL-DELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRE-N-LFFMETSAL 160 (224)
Q Consensus 84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~s~~ 160 (224)
+++.+|++++|+|++++.+.. ..|+ ..+.+.. .+.|+++|+||+|+..... ++.+.+..+ + .+++++||+
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~ 155 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSAL 155 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTT
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCC
Confidence 889999999999998754433 2333 4455432 3689999999999864221 123333332 3 468999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027382 161 EATNVETAFLTVLTEI 176 (224)
Q Consensus 161 ~~~~v~~~~~~i~~~i 176 (224)
+|.|++++|+.+...+
T Consensus 156 ~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 156 DERQVAELKADLLALM 171 (301)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999887654
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.89 E-value=3e-23 Score=174.12 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=98.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhh--------Hh
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVT--------SA 83 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~ 83 (224)
+..++|+++|.+|+|||||+|+|.+.... ....++.+.+.....+.+++ +.+.+|||||...+...+ ..
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------C
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 35689999999999999999999987532 33333333444444455544 579999999987655433 34
Q ss_pred HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382 84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT 163 (224)
Q Consensus 84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (224)
+++.+|++++|+|++++.++..+..+...+.... +.|+++|+||+|+.+.... ..+++......+++++||++|.
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~ 383 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGD 383 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTB
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCC
Confidence 6789999999999999777653333333333332 6999999999999754332 2234444434689999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027382 164 NVETAFLTVLTEIY 177 (224)
Q Consensus 164 ~v~~~~~~i~~~i~ 177 (224)
|++++|+++.+.+.
T Consensus 384 GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 384 GIDTLKQHMGDLVK 397 (476)
T ss_dssp SHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987764
No 131
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=9.1e-22 Score=151.82 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=103.9
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcce--eeEEEEEEECCeEEEEEEEeCCC-----------hhhh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGV--EFQTKTLSIDHKTVKAQIWDTAG-----------QERY 77 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~G-----------~~~~ 77 (224)
+....++|+|+|.+|||||||+|+|++........++.+. ........+ ....+.+||||| ...+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW--KETELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE--TTEEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe--CCceEEEEECCCccCCCCCHHHHHHHH
Confidence 4567899999999999999999999998876555443223 333333334 345789999999 3345
Q ss_pred hhhhHhHhcCCCEEEEEEeCCChhh--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC------HHHHHHHHHH
Q 027382 78 RAVTSAYYRGAVGAMLVYDMTKRQS--FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP------TEDAQEFAQR 149 (224)
Q Consensus 78 ~~~~~~~~~~~d~vi~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~------~~~~~~~~~~ 149 (224)
...+...++.+|++|+|+|++.... ...+..+...+... ...|+++|+||+|+.+...+. .+.+++++.+
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 5556666778999999999875332 22222333323221 136899999999986543322 2457888888
Q ss_pred cCCeEEEEcCCCC-----CCHHHHHHHHHHHH
Q 027382 150 ENLFFMETSALEA-----TNVETAFLTVLTEI 176 (224)
Q Consensus 150 ~~~~~~~~s~~~~-----~~v~~~~~~i~~~i 176 (224)
.+..++.++...+ .++.++|..+...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 8888888877644 57777777766554
No 132
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.88 E-value=1.7e-22 Score=163.01 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=115.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh----hhhhhHhHh---cCC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER----YRAVTSAYY---RGA 88 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~~~~---~~~ 88 (224)
.+|+|+|.++||||||+++|++........+..+.......+.+.. ...+.+||+||... +..+...++ ..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 3689999999999999999998764332222222222222333332 25789999999643 222334444 459
Q ss_pred CEEEEEEeCCC---hhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEcCCC
Q 027382 89 VGAMLVYDMTK---RQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN--LFFMETSALE 161 (224)
Q Consensus 89 d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~ 161 (224)
|++|+|+|+++ +++++.+..|+..+..... .+.|+++|+||+|+.+. .+.++++...+. .+++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 7889988889888887643 47999999999998641 245667777766 6899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027382 162 ATNVETAFLTVLTEIY 177 (224)
Q Consensus 162 ~~~v~~~~~~i~~~i~ 177 (224)
+.|++++|.+|.+.+.
T Consensus 314 g~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 314 REGLRELLFEVANQLE 329 (342)
T ss_dssp SSTTHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999987763
No 133
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=1.8e-21 Score=161.05 Aligned_cols=163 Identities=16% Similarity=0.127 Sum_probs=114.8
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEE--------------E--EEEE---CCeEEEEEEEeC
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQT--------------K--TLSI---DHKTVKAQIWDT 71 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--------------~--~~~~---~~~~~~~~l~D~ 71 (224)
.....++|+++|++++|||||+++|.+.......... ..+... . .... ......+.+|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 4557799999999999999999999975432211000 000000 0 0000 123378999999
Q ss_pred CChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHHH
Q 027382 72 AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTEDAQEFAQR 149 (224)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~ 149 (224)
||++.+...+...+..+|++|+|+|++++.+.....+++..+.... ..|+++++||+|+.+.... ..+++.++...
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998776777777776665543 2589999999999642211 11223333332
Q ss_pred c---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 150 E---NLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 150 ~---~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
. +++++++||++|.|++++|+.|.+.+
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 2 56899999999999999999887654
No 134
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=5.3e-21 Score=158.43 Aligned_cols=163 Identities=18% Similarity=0.154 Sum_probs=106.0
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCC---CCCccC--CcceeeEEEEEEE-------------C--C----eEEEEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEF---SVDSKA--TIGVEFQTKTLSI-------------D--H----KTVKAQ 67 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 67 (224)
....++|+++|+.++|||||+++|.+... .....+ |....+....... . + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 34679999999999999999999986432 222223 3333333222211 1 1 137899
Q ss_pred EEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHHHHH
Q 027382 68 IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--VPTEDAQE 145 (224)
Q Consensus 68 l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~ 145 (224)
+||+||++.+...+...+..+|++|+|+|++++.......+.+..+.... ..|+++++||+|+.+... ...+++++
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILG--IDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcC--CCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 99999999998888888889999999999996432222233333333221 257999999999975433 23566777
Q ss_pred HHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 146 FAQR---ENLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 146 ~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
++.. .+++++++||++|.|++++++.|.+.+
T Consensus 163 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 163 FVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 7765 357899999999999999999887654
No 135
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.87 E-value=9.4e-22 Score=168.81 Aligned_cols=157 Identities=19% Similarity=0.249 Sum_probs=111.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCC-------Cc------cCCcceeeEEEEEEE-----CCeEEEEEEEeCCChh
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSV-------DS------KATIGVEFQTKTLSI-----DHKTVKAQIWDTAGQE 75 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~-------~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~~ 75 (224)
+..||+++|+.++|||||+++|+...... .. ....|.++......+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999998632110 00 112244444333333 4457899999999999
Q ss_pred hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC---
Q 027382 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL--- 152 (224)
Q Consensus 76 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 152 (224)
.+...+...+..+|++|+|+|+++..+......|...... ++|+++|+||+|+.+.. .....+++....++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~----~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM----DLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT----TCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC----CCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999987777777777655543 68999999999997532 23345666666666
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 153 FFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 153 ~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
.++++||++|.|++++|+.+.+.+
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHS
T ss_pred eEEEeecccCCCchhHHHHHhhcC
Confidence 389999999999999999988765
No 136
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=1.8e-22 Score=163.42 Aligned_cols=119 Identities=19% Similarity=0.261 Sum_probs=100.8
Q ss_pred eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCC
Q 027382 62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTK----------RQSFDHMARWLDELRGHA-DKNIVIMLIGNKC 130 (224)
Q Consensus 62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~ 130 (224)
..+.+++||++|++.++..|..++++++++|||||+++ ..++.....|+..+.+.. ..+.|+++++||+
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence 36789999999999999999999999999999999999 457888888888887643 2579999999999
Q ss_pred CCCCCC---------------CCCHHHHHHHHH-----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382 131 DLGSLR---------------AVPTEDAQEFAQ-----------RENLFFMETSALEATNVETAFLTVLTEIYRII 180 (224)
Q Consensus 131 D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~ 180 (224)
|+.+++ .++.+++.+++. ..++.+++|||+++.||.++|.++.+.+.+..
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence 984221 356788888887 34577999999999999999999999887543
No 137
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=9.3e-22 Score=165.22 Aligned_cols=154 Identities=21% Similarity=0.248 Sum_probs=113.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChh-hhh--------hhhHh
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE-RYR--------AVTSA 83 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-~~~--------~~~~~ 83 (224)
..++|+++|.+|+|||||+|+|.+.... ....++.+.+.....+.+++ ..+.+|||||.. .+. .....
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 3489999999999999999999997643 33334334444455555654 568999999976 442 22456
Q ss_pred HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382 84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT 163 (224)
Q Consensus 84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (224)
++..+|++|+|+|++++.+.+.. .++..+ .+.|+++|+||+|+.+. ...+++.+++. .+.+++++||++|.
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~-~il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~ 390 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDR-KILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGE 390 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHH-HHHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTC
T ss_pred HhhcccEEEEEecCCCCCCHHHH-HHHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCC
Confidence 78899999999999987766543 233333 26899999999999642 44555655543 44689999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027382 164 NVETAFLTVLTEIYR 178 (224)
Q Consensus 164 ~v~~~~~~i~~~i~~ 178 (224)
|++++|++|.+.+..
T Consensus 391 Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 391 GLEKLEESIYRETQE 405 (482)
T ss_dssp CHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999987664
No 138
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.87 E-value=2.1e-21 Score=163.70 Aligned_cols=162 Identities=14% Similarity=0.105 Sum_probs=110.9
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCC----C---CCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhH
Q 027382 10 QKIDYVFKVVLIGDSAVGKSQLLARFARNE----F---SVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTS 82 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~ 82 (224)
......++|+++|+.++|||||+++|.+.. . .....+..+.+.....+.. ..+.+.+|||||++.+...+.
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~iiDtPGh~~~~~~~~ 91 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL--ENYRITLVDAPGHADLIRAVV 91 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE--TTEEEEECCCSSHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE--CCEEEEEEECCChHHHHHHHH
Confidence 344568999999999999999999999866 1 1222221122222222333 336899999999999999999
Q ss_pred hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHc----CCeEEE
Q 027382 83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--VPTEDAQEFAQRE----NLFFME 156 (224)
Q Consensus 83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~~~ 156 (224)
..+..+|++|+|+|+++... ....+++..+... ++|+++++||+|+.+... ...+++.+++... +.++++
T Consensus 92 ~~~~~aD~~ilVvda~~g~~-~qt~e~l~~~~~~---~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 167 (482)
T 1wb1_A 92 SAADIIDLALIVVDAKEGPK-TQTGEHMLILDHF---NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP 167 (482)
T ss_dssp HHTTSCCEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred HHHhhCCEEEEEEecCCCcc-HHHHHHHHHHHHc---CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence 99999999999999987321 1122223333332 588899999999964211 1123455666655 568999
Q ss_pred EcCCCCCCHHHHHHHHHHHHH
Q 027382 157 TSALEATNVETAFLTVLTEIY 177 (224)
Q Consensus 157 ~s~~~~~~v~~~~~~i~~~i~ 177 (224)
+||++|.|++++++.|.+.+.
T Consensus 168 vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 168 ISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHhhc
Confidence 999999999999999887664
No 139
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=5.2e-21 Score=163.98 Aligned_cols=159 Identities=21% Similarity=0.252 Sum_probs=114.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCC--CCC-----Ccc------CCcceeeEEE--EEEE---CCeEEEEEEEeCCC
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNE--FSV-----DSK------ATIGVEFQTK--TLSI---DHKTVKAQIWDTAG 73 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~--~~~-----~~~------~~~~~~~~~~--~~~~---~~~~~~~~l~D~~G 73 (224)
.+...+|+++|+.++|||||+++|+... ... ... ...|.++... .+.+ ++..+.+++|||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 4567899999999999999999998631 110 000 0112333211 1212 45568999999999
Q ss_pred hhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-
Q 027382 74 QERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL- 152 (224)
Q Consensus 74 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~- 152 (224)
+..+...+...+..+|++|+|+|+++..+......|...... ++|+++|+||+|+.... .....+++....++
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~----~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~ 156 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ----DLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLD 156 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT----TCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCC
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC----CCCEEEEEeccCccccC--HHHHHHHHHHhhCCC
Confidence 999999999999999999999999998777777777655542 68999999999997532 23345566666666
Q ss_pred --eEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 153 --FFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 153 --~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
.++++||++|.|++++|+.+++.+
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred cccEEEEEeecCCCchHHHHHHHHhc
Confidence 489999999999999999988765
No 140
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.86 E-value=1.6e-21 Score=151.19 Aligned_cols=168 Identities=14% Similarity=0.096 Sum_probs=105.1
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh--------hhhhhhhH
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ--------ERYRAVTS 82 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--------~~~~~~~~ 82 (224)
.....++|+|+|.+|||||||+|+|++........++.+.+.......+......+.+|||||. +.+.....
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 3457899999999999999999999998876554444334433333333334567899999995 33333333
Q ss_pred hHh----cCCCEEEEEEeCCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC------CHHHHHHHHHHcC
Q 027382 83 AYY----RGAVGAMLVYDMTKRQS-FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV------PTEDAQEFAQREN 151 (224)
Q Consensus 83 ~~~----~~~d~vi~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~------~~~~~~~~~~~~~ 151 (224)
.++ +.+|++|+|+|++.... ...+.+++..+......+.|+++++||.|+.+.... ....++.+....+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC
Confidence 333 89999999999985221 122233333332211126899999999999653210 1134677888888
Q ss_pred CeEEEEcCCC-----CCCHHHHHHHHHHHHHH
Q 027382 152 LFFMETSALE-----ATNVETAFLTVLTEIYR 178 (224)
Q Consensus 152 ~~~~~~s~~~-----~~~v~~~~~~i~~~i~~ 178 (224)
..++.++... +.++.+++..+.+.+.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 177 GRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 8887777654 47888888887766644
No 141
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=1e-21 Score=164.20 Aligned_cols=151 Identities=19% Similarity=0.241 Sum_probs=102.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhHhHh
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER---------YRAVTSAYY 85 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~ 85 (224)
.+|+++|.+|||||||+|+|.+.... ....+.++.+.....+.+++ ..+.+|||||.+. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 37999999999999999999987753 22333333344445555544 4578999999653 355677889
Q ss_pred cCCCEEEEEEeCCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHH-HHHHHHcCC-eEEEEcCCC
Q 027382 86 RGAVGAMLVYDMTKRQSFD--HMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDA-QEFAQRENL-FFMETSALE 161 (224)
Q Consensus 86 ~~~d~vi~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~ 161 (224)
+.+|++++|+|++++.+.. .+..|+. + .+.|+++|+||+|+.+. . ..++ .++. ..++ +++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 9999999999998754332 2333432 2 16899999999998421 0 1233 4444 4566 689999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027382 162 ATNVETAFLTVLTEIYR 178 (224)
Q Consensus 162 ~~~v~~~~~~i~~~i~~ 178 (224)
|.|+.++|+.+...+.+
T Consensus 150 g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 150 NINLDTMLETIIKKLEE 166 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999887754
No 142
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=7.8e-23 Score=170.78 Aligned_cols=152 Identities=18% Similarity=0.158 Sum_probs=101.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh--------hhhhhhHhHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE--------RYRAVTSAYYRG 87 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~~~ 87 (224)
.+|+++|.+|||||||+|+|.+..... ...+.|.+.......+......+.+|||||.+ .+...+..+++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 689999999999999999999876542 22334566555555566666789999999975 567778888999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCCHH
Q 027382 88 AVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATNVE 166 (224)
Q Consensus 88 ~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~ 166 (224)
+|++|+|+|+.++.+... ..+...+++ .+.|+++|+||+|+.+... ++.++. ..++ +++++||++|.|+.
T Consensus 83 ad~il~vvD~~~~~~~~d-~~~~~~l~~---~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~ 153 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD-EEVAKILYR---TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLG 153 (436)
T ss_dssp CSEEEEEEETTTCSCHHH-HHHHHHHTT---CCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChH
Confidence 999999999988655432 223233332 3689999999999864221 122233 3454 68999999999999
Q ss_pred HHHHHHHHHHH
Q 027382 167 TAFLTVLTEIY 177 (224)
Q Consensus 167 ~~~~~i~~~i~ 177 (224)
++++++.+.+.
T Consensus 154 ~L~~~i~~~l~ 164 (436)
T 2hjg_A 154 DLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHTGG
T ss_pred HHHHHHHHhcC
Confidence 99999887663
No 143
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.86 E-value=3.3e-21 Score=159.80 Aligned_cols=165 Identities=19% Similarity=0.161 Sum_probs=111.6
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCCC---CCCccC--CcceeeEEEEEEE-------------C--C----eEEE
Q 027382 10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEF---SVDSKA--TIGVEFQTKTLSI-------------D--H----KTVK 65 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~ 65 (224)
......++|+++|+.++|||||+++|.+... .....+ |....+....... . + ....
T Consensus 5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 84 (410)
T 1kk1_A 5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR 84 (410)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence 3456789999999999999999999996432 222223 3222332222211 0 1 1378
Q ss_pred EEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHHH
Q 027382 66 AQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--VPTEDA 143 (224)
Q Consensus 66 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~ 143 (224)
+.+|||||++.+.......+..+|++|+|+|+++........+.+..+.... ..|+++++||+|+.+... ...+++
T Consensus 85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEECccCCCHHHHHHHHHHH
Confidence 9999999999998888888889999999999996431222233333333221 257999999999864221 123345
Q ss_pred HHHHHH---cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 144 QEFAQR---ENLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 144 ~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
++++.. .+++++++||++|.|++++++.|.+.+
T Consensus 163 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 163 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 555554 357899999999999999999887654
No 144
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.86 E-value=9.5e-22 Score=153.53 Aligned_cols=164 Identities=13% Similarity=0.087 Sum_probs=104.9
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCC-cceeeEEEEEEECCeEEEEEEEeCCChhhhh----------
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKAT-IGVEFQTKTLSIDHKTVKAQIWDTAGQERYR---------- 78 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------- 78 (224)
+....++|+|+|++|||||||+++|++.... ..+.++ .+.......... ....+.+|||||...+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW--GNREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE--TTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe--CCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 3456799999999999999999999987743 333332 223333333333 34579999999975442
Q ss_pred -hhhHhHhcCCCEEEEEEeCCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEe-CCCCCCCCCCCH-------HHHHHHHH
Q 027382 79 -AVTSAYYRGAVGAMLVYDMTKRQS-FDHMARWLDELRGHADKNIVIMLIGN-KCDLGSLRAVPT-------EDAQEFAQ 148 (224)
Q Consensus 79 -~~~~~~~~~~d~vi~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~n-K~D~~~~~~~~~-------~~~~~~~~ 148 (224)
.....+++.+|++|+|+|++.... ...+..++..+.... ...|+++++| |+|+.+. .+.. .+++++..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHH
Confidence 223346789999999999986222 222333443332211 1356666666 9999742 2111 23445666
Q ss_pred HcCCe---E--EEEcCCCCCCHHHHHHHHHHHHHH
Q 027382 149 RENLF---F--METSALEATNVETAFLTVLTEIYR 178 (224)
Q Consensus 149 ~~~~~---~--~~~s~~~~~~v~~~~~~i~~~i~~ 178 (224)
..+.. + +++||+++.|++++|..+.+.+..
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 65543 2 789999999999999999887754
No 145
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=1.3e-21 Score=165.37 Aligned_cols=155 Identities=16% Similarity=0.112 Sum_probs=104.6
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------------------------ccCCcceeeEEEEEEECCe
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVD-----------------------------SKATIGVEFQTKTLSIDHK 62 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 62 (224)
....+||+++|++++|||||+++|++...... .....|+++......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 34679999999999999999999986521100 0011144444444445566
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhH------HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSF------DHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 136 (224)
.+.+.+|||||++.+...+..++..+|++|+|+|++++++. ....+.+..+.... ..|+++|+||+|+.+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~--~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG--IHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT--CCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC--CCcEEEEEECcCcccch
Confidence 77899999999999999999999999999999999986432 22233333333221 24699999999997533
Q ss_pred CCCHHHH----HHHHHHc-----CCeEEEEcCCCCCCHHHH
Q 027382 137 AVPTEDA----QEFAQRE-----NLFFMETSALEATNVETA 168 (224)
Q Consensus 137 ~~~~~~~----~~~~~~~-----~~~~~~~s~~~~~~v~~~ 168 (224)
....+++ .++.... +++++++||++|.|+.++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 3333333 3333333 357999999999999853
No 146
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=7.5e-21 Score=158.66 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=109.5
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc-----------------------------cCCcceeeEEEEEEECC
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS-----------------------------KATIGVEFQTKTLSIDH 61 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 61 (224)
+....++|+++|++++|||||+++|++....... ....|.+.......+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 4557799999999999999999999654211100 01124555555555556
Q ss_pred eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhh---H---HHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCC
Q 027382 62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS---F---DHMARWLDELRGHADKNIV-IMLIGNKCDLGS 134 (224)
Q Consensus 62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~ 134 (224)
....+.+|||||++.+...+...+..+|++|+|+|+++... + ....+.+..+... ++| +++++||+|+.+
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~---~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA---GVKHLIVLINKMDDPT 169 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc---CCCeEEEEeecCCCcc
Confidence 66799999999999999999999999999999999998532 1 1233333333322 466 899999999853
Q ss_pred CC--C----CCHHHHHHHHHHcC------CeEEEEcCCCCCCHHHHHH
Q 027382 135 LR--A----VPTEDAQEFAQREN------LFFMETSALEATNVETAFL 170 (224)
Q Consensus 135 ~~--~----~~~~~~~~~~~~~~------~~~~~~s~~~~~~v~~~~~ 170 (224)
.. . ...+++..++...+ ++++++||++|.|+.++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 21 1 11233445555544 4699999999999999765
No 147
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.85 E-value=1.6e-20 Score=152.83 Aligned_cols=161 Identities=17% Similarity=0.144 Sum_probs=107.3
Q ss_pred eEE-EEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh---------hhhhhhhHhH
Q 027382 15 VFK-VVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ---------ERYRAVTSAY 84 (224)
Q Consensus 15 ~i~-i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~~~~ 84 (224)
.++ |+++|.+|+|||||+|+|.+........+..+.+.....+.+++ ..+.+|||+|. +.+...+ ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 344 99999999999999999998876433333323344455566665 46789999995 2233333 34
Q ss_pred hcCCCEEEEEEeCCChh--hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC-CHHHHHHHHHHc---CCeEEEEc
Q 027382 85 YRGAVGAMLVYDMTKRQ--SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV-PTEDAQEFAQRE---NLFFMETS 158 (224)
Q Consensus 85 ~~~~d~vi~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~s 158 (224)
+..+|++++|+|++++. .......|...+......+.|+++|.||+|+.+.... ....+..++... +.+++++|
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 78899999999999876 5555555666665544357899999999998643210 011233344444 23689999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 027382 159 ALEATNVETAFLTVLTEIYR 178 (224)
Q Consensus 159 ~~~~~~v~~~~~~i~~~i~~ 178 (224)
++++.|++++++.|.+.+..
T Consensus 335 A~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcc
Confidence 99999999999998876644
No 148
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.85 E-value=6.5e-22 Score=158.03 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=99.1
Q ss_pred eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCC
Q 027382 62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMT----------KRQSFDHMARWLDELRGHAD-KNIVIMLIGNKC 130 (224)
Q Consensus 62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~ 130 (224)
..+.+++||++|++.++..|..++++++++|||||++ +..++.+...|+..+.+... .+.|+++++||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 4588999999999999999999999999999999665 56778888888887765432 579999999999
Q ss_pred CCCCCC----------------CCCHHHHHHHHH----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q 027382 131 DLGSLR----------------AVPTEDAQEFAQ----------RENLFFMETSALEATNVETAFLTVLTEIYRII 180 (224)
Q Consensus 131 D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~ 180 (224)
|+.+++ ..+.+++.+|+. ..++.+++|||+++.||..+|..+.+.+++..
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 985322 467788888853 34567899999999999999999999987653
No 149
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.85 E-value=2.6e-21 Score=154.01 Aligned_cols=156 Identities=21% Similarity=0.192 Sum_probs=104.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh-h--------hhhhhHhH
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE-R--------YRAVTSAY 84 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-~--------~~~~~~~~ 84 (224)
...+|+++|++|+|||||+|+|++.......... +.+.......+......+.+|||||.. . +......+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~-~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKA-QTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCS-SCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCC-CcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 3457999999999999999999998754221111 122211111123345688999999986 2 23334566
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHHH-HHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCC
Q 027382 85 YRGAVGAMLVYDMTKRQSFDHMARWL-DELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEA 162 (224)
Q Consensus 85 ~~~~d~vi~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 162 (224)
++.+|++++|+|+++ +.....++ ..+.. .+.|+++++||+|+........+.+.++....+. .++++||+++
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 789999999999976 22222333 23332 3689999999999864212122345556555665 6999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027382 163 TNVETAFLTVLTEI 176 (224)
Q Consensus 163 ~~v~~~~~~i~~~i 176 (224)
.|++++++.+...+
T Consensus 160 ~~v~~l~~~i~~~l 173 (301)
T 1ega_A 160 LNVDTIAAIVRKHL 173 (301)
T ss_dssp TTHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999887544
No 150
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.85 E-value=1.1e-21 Score=154.41 Aligned_cols=160 Identities=14% Similarity=0.164 Sum_probs=92.6
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-c-------cCCcceeeEEEEEEECCeEEEEEEEeCCChh-------h
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVD-S-------KATIGVEFQTKTLSIDHKTVKAQIWDTAGQE-------R 76 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-------~ 76 (224)
....++|+|+|.+|+|||||+|+|++...... + .++.+.+.....+..++..+.+.+|||||.. .
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 45679999999999999999999987665433 2 3444555555444445556799999999962 2
Q ss_pred hhhhh-------HhHhc-------------CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382 77 YRAVT-------SAYYR-------------GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136 (224)
Q Consensus 77 ~~~~~-------~~~~~-------------~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 136 (224)
+..+. ..++. .+|+++++++.+.......-..++..+.. .+|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 22222 33333 37899999987762222222334555544 69999999999985322
Q ss_pred CC--CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382 137 AV--PTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 137 ~~--~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
.. ..+.+.+.+...+++++++|++++.|+.+++.+|.+.
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 11 1123445556678899999999999999988877653
No 151
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.85 E-value=1.5e-21 Score=163.32 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=101.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhh--------Hh
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVT--------SA 83 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~ 83 (224)
...++|+++|.+|+|||||+|+|++.... ....++.+.+.....+.+++ ..+.+|||||...+...+ ..
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------C
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhh
Confidence 35689999999999999999999987543 23333333444434445554 567999999976554332 23
Q ss_pred HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCC
Q 027382 84 YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEAT 163 (224)
Q Consensus 84 ~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (224)
++..+|++++|+|++++.+... ..|+..+. ..|+++|+||+|+.+..... ..+++. ...+++++||++|.
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~ 369 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQ 369 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTB
T ss_pred hhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCC
Confidence 5789999999999998655543 44555553 36999999999996543322 111111 34679999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027382 164 NVETAFLTVLTEIY 177 (224)
Q Consensus 164 ~v~~~~~~i~~~i~ 177 (224)
|++++|+.+.+.+.
T Consensus 370 Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 370 GIDSLETAILEIVQ 383 (462)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987664
No 152
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.84 E-value=2.6e-21 Score=164.28 Aligned_cols=121 Identities=18% Similarity=0.193 Sum_probs=86.9
Q ss_pred cccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC---------------Ccc-----CCcceeeEEEEEEECCeEEEEEEE
Q 027382 10 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFSV---------------DSK-----ATIGVEFQTKTLSIDHKTVKAQIW 69 (224)
Q Consensus 10 ~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~l~ 69 (224)
.+.+...+|+|+|++|+|||||+++|+...... ... ...|.++......+.+..+.+.+|
T Consensus 8 ~~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~li 87 (528)
T 3tr5_A 8 KQTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLL 87 (528)
T ss_dssp HHHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEE
T ss_pred hhhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEE
Confidence 345677899999999999999999997321100 000 001233333333344456789999
Q ss_pred eCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 70 DTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 70 D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
||||+..+...+..+++.+|++|+|+|+++..+......| ..+.. .++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence 9999999999999999999999999999986666555444 33333 2689999999999964
No 153
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=7.5e-21 Score=158.67 Aligned_cols=157 Identities=20% Similarity=0.167 Sum_probs=108.1
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC------------ccCC-------------------cceeeEEEEEEEC
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVD------------SKAT-------------------IGVEFQTKTLSID 60 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~------------~~~~-------------------~~~~~~~~~~~~~ 60 (224)
....++|+++|++++|||||+++|++...... ..++ .|.+.......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 34679999999999999999999987541100 0011 1222222233344
Q ss_pred CeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--
Q 027382 61 HKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV-- 138 (224)
Q Consensus 61 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-- 138 (224)
.....+.+|||||++.+...+..++..+|++|+|+|++++.. ....+++..+.... ..|+++++||+|+.+....
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLLG--IKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHTT--CCEEEEEEECTTTTTSCHHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC--CCeEEEEEEcCcCCcccHHHH
Confidence 456789999999999998888899999999999999998542 23344444444331 2369999999999752211
Q ss_pred --CHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHHH
Q 027382 139 --PTEDAQEFAQREN-----LFFMETSALEATNVETAFLT 171 (224)
Q Consensus 139 --~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~~~ 171 (224)
..+++.++++.++ ++++++||++|.|+.++|..
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 1244566777777 57999999999999886443
No 154
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.84 E-value=1.9e-21 Score=157.86 Aligned_cols=120 Identities=19% Similarity=0.225 Sum_probs=93.4
Q ss_pred eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCC
Q 027382 62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTK----------RQSFDHMARWLDELRGHA-DKNIVIMLIGNKC 130 (224)
Q Consensus 62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~ 130 (224)
..+.+++||++|++.++..|..++++++++|||||+++ ..++.....|+..+.+.. ..+.|+++++||+
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence 35789999999999999999999999999999999999 678999999998887653 3579999999999
Q ss_pred CCCCCC----------------CCCHHHHHHHHH-----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 027382 131 DLGSLR----------------AVPTEDAQEFAQ-----------RENLFFMETSALEATNVETAFLTVLTEIYRIIS 181 (224)
Q Consensus 131 D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~ 181 (224)
|+.+++ .++.+++..++. ..++.+++|||+++.|+.++|.++.+.+.+...
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL 356 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence 985321 256778887762 345778999999999999999999998876544
No 155
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=9e-21 Score=158.44 Aligned_cols=161 Identities=20% Similarity=0.178 Sum_probs=106.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhh-----------
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAV----------- 80 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~----------- 80 (224)
+..++|+++|++|||||||+|+|++.... ....+..+.+.....+.+++. .+.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 45799999999999999999999987643 222222222233344455554 5789999996433211
Q ss_pred -hHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHH-HHH----cCCeE
Q 027382 81 -TSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF-AQR----ENLFF 154 (224)
Q Consensus 81 -~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~-~~~----~~~~~ 154 (224)
...++..+|++++|+|++++.+... ..+...+.. .+.|+++++||+|+.+......++..+. ... .++++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~-~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 1346778999999999987555443 223333332 3689999999999975444344444322 222 35789
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382 155 METSALEATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 155 ~~~s~~~~~~v~~~~~~i~~~i~~~ 179 (224)
+++||++|.|++++|+.+.+.+.+.
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999998766543
No 156
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.84 E-value=6.3e-21 Score=154.31 Aligned_cols=120 Identities=19% Similarity=0.227 Sum_probs=95.5
Q ss_pred eEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCC
Q 027382 62 KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMT----------KRQSFDHMARWLDELRGHA-DKNIVIMLIGNKC 130 (224)
Q Consensus 62 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~ 130 (224)
..+.+++||++|++.++..|..++++++++|||||++ +..+++....|+..+.+.. ..++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5789999999999999999999999999999999998 7789999999998887653 2579999999999
Q ss_pred CCCCCCC--C-------------------CHHHHHHHHHH----------------cCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 131 DLGSLRA--V-------------------PTEDAQEFAQR----------------ENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 131 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
|+.+++. + +.+++.+++.. ..+.+++|||+++.||.++|.++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9843211 1 14566666443 123468999999999999999999
Q ss_pred HHHHHHHh
Q 027382 174 TEIYRIIS 181 (224)
Q Consensus 174 ~~i~~~~~ 181 (224)
+.+.+...
T Consensus 341 ~~I~~~~l 348 (354)
T 2xtz_A 341 ETLRRRNL 348 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876543
No 157
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.84 E-value=5.2e-23 Score=174.25 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=112.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
++..+|+++|++++|||||+++|.+..+...+.++.+.++....+... ....+.+|||||++.+..++..++..+|++|
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 346789999999999999999999876654444444333333322221 2346899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC-CHHHHHHH---HHHc--CCeEEEEcCCCCCCHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV-PTEDAQEF---AQRE--NLFFMETSALEATNVE 166 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~-~~~~~~~~---~~~~--~~~~~~~s~~~~~~v~ 166 (224)
+|+|+++........ ++..+.. .++|+++++||+|+.+.... ...++..+ +..+ .++++++||++|.|++
T Consensus 81 LVVDa~dg~~~qt~e-~l~~~~~---~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 81 LVVAADDGVMKQTVE-SIQHAKD---AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp EECBSSSCCCHHHHH-HHHHHHT---TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 999999855444333 3333332 36899999999999643221 11222222 1112 2479999999999999
Q ss_pred HHHHHHHHHH
Q 027382 167 TAFLTVLTEI 176 (224)
Q Consensus 167 ~~~~~i~~~i 176 (224)
++|+.+...+
T Consensus 157 eLle~I~~l~ 166 (537)
T 3izy_P 157 ALAEATIALA 166 (537)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHhh
Confidence 9999988655
No 158
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.84 E-value=5.1e-21 Score=153.36 Aligned_cols=120 Identities=17% Similarity=0.241 Sum_probs=98.3
Q ss_pred ECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhcC-CCCCcEEEEE
Q 027382 59 IDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMT----------KRQSFDHMARWLDELRGHA-DKNIVIMLIG 127 (224)
Q Consensus 59 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~ 127 (224)
+....+.+++||++|++.++..|..++++++++|||||++ +..++.+...|+..+.+.. ..++|+++++
T Consensus 156 ~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~ 235 (340)
T 4fid_A 156 FVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFL 235 (340)
T ss_dssp EESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEE
T ss_pred EEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEE
Confidence 3445688999999999999999999999999999999998 6788988888888776653 2579999999
Q ss_pred eCCCCCCC---------------CCCCHHHHHHHHHH---------------------------cCCeEEEEcCCCCCCH
Q 027382 128 NKCDLGSL---------------RAVPTEDAQEFAQR---------------------------ENLFFMETSALEATNV 165 (224)
Q Consensus 128 nK~D~~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~~s~~~~~~v 165 (224)
||+|+.++ ...+.+++.+|+.. ..+.+++|||++..||
T Consensus 236 NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv 315 (340)
T 4fid_A 236 NKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNI 315 (340)
T ss_dssp ECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHH
T ss_pred ECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHH
Confidence 99998421 11246666555432 2367899999999999
Q ss_pred HHHHHHHHHHHHH
Q 027382 166 ETAFLTVLTEIYR 178 (224)
Q Consensus 166 ~~~~~~i~~~i~~ 178 (224)
..+|..+.+.|++
T Consensus 316 ~~vF~~v~~~Il~ 328 (340)
T 4fid_A 316 KRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999987
No 159
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.84 E-value=6.1e-21 Score=155.69 Aligned_cols=147 Identities=12% Similarity=0.053 Sum_probs=109.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEe
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 96 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d 96 (224)
+|+++|++++|||||+++|+ .. +.+.......+......+.+|||||++.+.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~----giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KK----GTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EE----EEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------hC----CEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 11 222222333455556679999999999998888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCCCcE-EEEEe-CCCCCCCCCCC--HHHHHHHHHHcC---CeEEE--EcCCC---CCC
Q 027382 97 MTKRQSFDHMARWLDELRGHADKNIVI-MLIGN-KCDLGSLRAVP--TEDAQEFAQREN---LFFME--TSALE---ATN 164 (224)
Q Consensus 97 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~n-K~D~~~~~~~~--~~~~~~~~~~~~---~~~~~--~s~~~---~~~ 164 (224)
+. ......++++..+... ++|. ++++| |+|+ +..... .++++++++..+ +++++ +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 54 4445556666555543 4676 88999 9998 422211 144555655543 68999 99999 999
Q ss_pred HHHHHHHHHHHHHHH
Q 027382 165 VETAFLTVLTEIYRI 179 (224)
Q Consensus 165 v~~~~~~i~~~i~~~ 179 (224)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999998876543
No 160
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.84 E-value=4.4e-22 Score=162.14 Aligned_cols=166 Identities=14% Similarity=0.234 Sum_probs=92.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-Ccc--------CCcceeeEEEEEEECCeEEEEEEEeCCCh-------h
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSV-DSK--------ATIGVEFQTKTLSIDHKTVKAQIWDTAGQ-------E 75 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~-------~ 75 (224)
....++|+|+|++|+|||||+++|++..... .+. ++.+.......+...+..+.+.+|||||. +
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 4567899999999999999999987754332 221 23333333333333455678999999998 5
Q ss_pred hhhhhhH-------hHhcCC-------------CEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 76 RYRAVTS-------AYYRGA-------------VGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 76 ~~~~~~~-------~~~~~~-------------d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
.+..++. .++..+ ++++|+++.+ ..++..+. .++..+. .++|+++|+||+|+..
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLT 188 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCC
Confidence 5655554 555433 3455555442 34444443 3444332 4799999999999965
Q ss_pred CCCCCH--HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHhcc
Q 027382 135 LRAVPT--EDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIISKK 183 (224)
Q Consensus 135 ~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~~~ 183 (224)
.+.+.. +++.+++..++++++++||+++.+ ++.|..+.+.+.+..+..
T Consensus 189 ~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~ 238 (361)
T 2qag_A 189 LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPFS 238 (361)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSCE
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCCC
Confidence 433322 456666777889999999999999 899999998887766543
No 161
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=7.2e-21 Score=141.75 Aligned_cols=117 Identities=20% Similarity=0.301 Sum_probs=89.1
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC---ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcC-
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVD---SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRG- 87 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~- 87 (224)
.+..++|+++|++|||||||+++|.+..+... +.++.+ .....+.+.+||+||++.+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 45678999999999999999999999875431 112211 12245678999999998887777777766
Q ss_pred ---CCEEEEEEeCC-ChhhHHHHHHHHHHHHhc----CCCCCcEEEEEeCCCCCCCCC
Q 027382 88 ---AVGAMLVYDMT-KRQSFDHMARWLDELRGH----ADKNIVIMLIGNKCDLGSLRA 137 (224)
Q Consensus 88 ---~d~vi~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ilv~nK~D~~~~~~ 137 (224)
+|++|+|||++ +++++..+..|+..+... ...+.|+++|+||+|+.+...
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 899999988888776543 234799999999999975443
No 162
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=1.2e-21 Score=164.57 Aligned_cols=153 Identities=17% Similarity=0.134 Sum_probs=102.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCC--------hhhhhhhhHhHh
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAG--------QERYRAVTSAYY 85 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G--------~~~~~~~~~~~~ 85 (224)
...+|+|+|.+|||||||+|+|.+...... ..+.|.+.......+......+.+||||| ++.+...+..++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 457899999999999999999998776422 23346666666666777778899999999 778888899999
Q ss_pred cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEcCCCCCC
Q 027382 86 RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENL-FFMETSALEATN 164 (224)
Q Consensus 86 ~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 164 (224)
..+|++|+|+|..+..+. ...++..+.+. .+.|+++|+||+|+.+.. ....++.. .+. .++++||++|.|
T Consensus 101 ~~ad~il~VvD~~~~~~~--~d~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~~-lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTA--ADEEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFYS-LGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHCSEEEEEEESSSCSCH--HHHHHHHHHTT--CCSCEEEEEECC-------------CCSGG-GSSSSEEECCTTTCTT
T ss_pred hhCCEEEEEEeCCCCCCh--HHHHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHHH-cCCCceEEeecccccc
Confidence 999999999998763222 22333222222 379999999999985321 11222222 232 478999999999
Q ss_pred HHHHHHHHHHHH
Q 027382 165 VETAFLTVLTEI 176 (224)
Q Consensus 165 v~~~~~~i~~~i 176 (224)
+.++++.+.+.+
T Consensus 172 v~~L~~~i~~~l 183 (456)
T 4dcu_A 172 LGDLLDAVAEHF 183 (456)
T ss_dssp HHHHHHHHHTTG
T ss_pred hHHHHHHHHhhc
Confidence 999999987654
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.83 E-value=9.1e-21 Score=156.46 Aligned_cols=158 Identities=18% Similarity=0.095 Sum_probs=109.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCC-------CCCC-------ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNE-------FSVD-------SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA 79 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 79 (224)
..++|+++|++++|||||+++|.+.. +... .....|.+.......+......+.+|||||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 35899999999999999999998731 1000 001234455544455555567899999999999988
Q ss_pred hhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCC---CCHHHHHHHHHHcC----
Q 027382 80 VTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRA---VPTEDAQEFAQREN---- 151 (224)
Q Consensus 80 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~---~~~~~~~~~~~~~~---- 151 (224)
.+...+..+|++|+|+|+++...... .+++..+... ++| +++++||+|+.+... ...+++++++..++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88899999999999999998543333 3333444332 578 789999999864111 11235666777765
Q ss_pred -CeEEEEcCCCCCC----------HHHHHHHHHHH
Q 027382 152 -LFFMETSALEATN----------VETAFLTVLTE 175 (224)
Q Consensus 152 -~~~~~~s~~~~~~----------v~~~~~~i~~~ 175 (224)
++++++||++|.| +.++++.+.+.
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~ 192 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence 5899999999764 66666665543
No 164
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.83 E-value=1e-20 Score=154.84 Aligned_cols=119 Identities=17% Similarity=0.206 Sum_probs=97.5
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCC
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTK----------RQSFDHMARWLDELRGHA-DKNIVIMLIGNKCD 131 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D 131 (224)
.+.+++||++|++.++..|..++++++++|||||+++ ..++..+..|+..+.+.. ..++|++||+||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 4789999999999999999999999999999999999 889999999999887753 36799999999999
Q ss_pred CCCCCC---C---------------------------CHHHHHHHH-----HH--------cCCeEEEEcCCCCCCHHHH
Q 027382 132 LGSLRA---V---------------------------PTEDAQEFA-----QR--------ENLFFMETSALEATNVETA 168 (224)
Q Consensus 132 ~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~s~~~~~~v~~~ 168 (224)
+.+.+. + ..+++..|+ .. ..+.+++|||+++.||.++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v 375 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 375 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence 843211 1 135566653 22 2456789999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027382 169 FLTVLTEIYRIIS 181 (224)
Q Consensus 169 ~~~i~~~i~~~~~ 181 (224)
|..+.+.+.+...
T Consensus 376 F~~v~~~I~~~~l 388 (402)
T 1azs_C 376 FNDCRDIIQRMHL 388 (402)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988876543
No 165
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.83 E-value=2.6e-21 Score=160.15 Aligned_cols=150 Identities=17% Similarity=0.147 Sum_probs=107.0
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcC--------CCCCC-------ccCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARN--------EFSVD-------SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 75 (224)
.....++|+++|++++|||||+++|.+. .+... .....|.++......+......+.+|||||++
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 4456799999999999999999999873 11100 00123444444455555566789999999999
Q ss_pred hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC
Q 027382 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAV---PTEDAQEFAQREN 151 (224)
Q Consensus 76 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~ 151 (224)
.+...+...+..+|++|+|+|+++... ....+++..+... ++| +++++||+|+.+.... ..+++++++..++
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 998889999999999999999988543 3345555555543 577 8899999999641110 1234566776665
Q ss_pred -----CeEEEEcCCCCCC
Q 027382 152 -----LFFMETSALEATN 164 (224)
Q Consensus 152 -----~~~~~~s~~~~~~ 164 (224)
++++++||++|.|
T Consensus 163 ~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALE 180 (405)
T ss_dssp SCTTTSCEEECCHHHHHH
T ss_pred ccccCCCEEEccHHHhhh
Confidence 6799999999977
No 166
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.83 E-value=5.3e-21 Score=159.56 Aligned_cols=154 Identities=17% Similarity=0.197 Sum_probs=105.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC--CCCCCc---------------------------cCCcceeeEEEEEEECCeE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARN--EFSVDS---------------------------KATIGVEFQTKTLSIDHKT 63 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 63 (224)
...++|+++|++++|||||+++|++. .+.... ....|.+.......+....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45689999999999999999999874 222110 0011333333333455566
Q ss_pred EEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHH-------HHHHHHHhcCCCCC-cEEEEEeCCCCCCC
Q 027382 64 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA-------RWLDELRGHADKNI-VIMLIGNKCDLGSL 135 (224)
Q Consensus 64 ~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-------~~~~~~~~~~~~~~-p~ilv~nK~D~~~~ 135 (224)
+.+.+|||||++.+...+..++..+|++|+|+|+++ .+++... +.+..+... ++ |+++++||+|+.+.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCCc
Confidence 789999999999999999999999999999999998 6666433 322222222 33 58999999999652
Q ss_pred C--C----CCHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHHHH
Q 027382 136 R--A----VPTEDAQEFAQREN-----LFFMETSALEATNVETAFL 170 (224)
Q Consensus 136 ~--~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~~ 170 (224)
. + ...+++++++..++ ++++++||++|.|+.+++.
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1 1 11345667777765 6799999999999986654
No 167
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.82 E-value=9.1e-20 Score=156.65 Aligned_cols=159 Identities=16% Similarity=0.150 Sum_probs=106.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEEC----------------CeEEEEEEEeCCChhhh
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSID----------------HKTVKAQIWDTAGQERY 77 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~D~~G~~~~ 77 (224)
+..+|+++|++++|||||+++|++.............+......... .....+.+|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 46789999999999999999998764422111011111111111110 11225899999999999
Q ss_pred hhhhHhHhcCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC-------------H-
Q 027382 78 RAVTSAYYRGAVGAMLVYDMTK---RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP-------------T- 140 (224)
Q Consensus 78 ~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-------------~- 140 (224)
..++...+..+|++|+|+|+++ +.+++.+.. +.. .++|+++++||+|+....... .
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9999999999999999999998 555554332 232 268999999999996422110 0
Q ss_pred --H-------HHHHHHHHcC---------------CeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382 141 --E-------DAQEFAQREN---------------LFFMETSALEATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 141 --~-------~~~~~~~~~~---------------~~~~~~s~~~~~~v~~~~~~i~~~i~~~ 179 (224)
+ ++.+...+.+ .+++++||++|.|++++++++...+...
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 0 1111122222 3799999999999999999998776543
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.4e-21 Score=165.03 Aligned_cols=155 Identities=15% Similarity=0.088 Sum_probs=106.1
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-----------------------------CCcceeeEEEEEEECCe
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-----------------------------ATIGVEFQTKTLSIDHK 62 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 62 (224)
....++|+++|++++|||||+++|++........ ...|+++......+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 4567899999999999999999999764322110 01234443333444456
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhh------HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS------FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 136 (224)
.+.+.+|||||++.+...+..++..+|++|+|+|++++.. .......+..+.... ..|+++|+||+|+.+..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lg--i~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG--IHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTT--CCEEEEEEECTTTTTTC
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcC--CCeEEEEEecccccchh
Confidence 6789999999999999999999999999999999987421 112233333333221 24599999999997533
Q ss_pred CCCH----HHHHHHHHHcC-----CeEEEEcCCCCCCHHHH
Q 027382 137 AVPT----EDAQEFAQREN-----LFFMETSALEATNVETA 168 (224)
Q Consensus 137 ~~~~----~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~ 168 (224)
.... +++..++...+ ++++++||++|.|+.++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2222 23344444443 58999999999999876
No 169
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.81 E-value=4.6e-21 Score=161.13 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=91.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------------------cc-----CCcceeeEEEEEEECCeE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNE--FSVD----------------------SK-----ATIGVEFQTKTLSIDHKT 63 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~--~~~~----------------------~~-----~~~~~~~~~~~~~~~~~~ 63 (224)
...++|+++|+.++|||||+++|+... +... .+ ...|.+.......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 567999999999999999999997521 1100 00 011223322222233345
Q ss_pred EEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChh---hHH---HHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCC
Q 027382 64 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQ---SFD---HMARWLDELRGHADKNIV-IMLIGNKCDLGSLR 136 (224)
Q Consensus 64 ~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~ 136 (224)
..+.+|||||++.|...+...+..+|++|+|+|+++.. +|+ ...+.+..+.. .++| +++++||+|+.+..
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~---~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTTSTTCS
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH---cCCCEEEEEEECccCCCcc
Confidence 78999999999999998999999999999999999852 222 22222222222 2576 99999999995421
Q ss_pred C------CCHHHHHHHHHHc-------CCeEEEEcCCCCCCHHHHH
Q 027382 137 A------VPTEDAQEFAQRE-------NLFFMETSALEATNVETAF 169 (224)
Q Consensus 137 ~------~~~~~~~~~~~~~-------~~~~~~~s~~~~~~v~~~~ 169 (224)
. ...+++.+++... +++++++||++|.|+.++|
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1 1123466666665 3569999999999998766
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.80 E-value=3.1e-20 Score=147.62 Aligned_cols=162 Identities=12% Similarity=0.137 Sum_probs=104.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc------cCCc-----------------c---eeeE------------
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS------KATI-----------------G---VEFQ------------ 53 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~-----------------~---~~~~------------ 53 (224)
....++|+|+|.+|||||||+|+|++..+.+.. .++. | .++.
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999998764211 1210 0 0000
Q ss_pred -----------EEEEEEC-CeEEEEEEEeCCChh-------------hhhhhhHhHhcCCCEEE-EEEeCCChhhHHHHH
Q 027382 54 -----------TKTLSID-HKTVKAQIWDTAGQE-------------RYRAVTSAYYRGAVGAM-LVYDMTKRQSFDHMA 107 (224)
Q Consensus 54 -----------~~~~~~~-~~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~vi-~v~d~~~~~s~~~~~ 107 (224)
...+.+. .....+.+|||||.. .+..+...+++.++.++ +|+|+++..+.....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0000010 013579999999953 45667788888888776 799998754443333
Q ss_pred HHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH--cC-CeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 108 RWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR--EN-LFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 108 ~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
.++..+. ..+.|+++|+||+|+.+......+.++..... .+ .+++++||++|.|++++|+.+....
T Consensus 183 ~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 183 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 4444443 24689999999999975443223322211001 12 3578899999999999999988743
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.80 E-value=1.1e-19 Score=163.24 Aligned_cols=160 Identities=19% Similarity=0.140 Sum_probs=107.7
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCC-------CCC-------CccCCcceeeEEEEEEECCeEEEEEEEeCCChhh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNE-------FSV-------DSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER 76 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 76 (224)
.....++|+++|++++|||||+++|.+.. +.. ....+.|+++....+.++.....+.+|||||++.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34567999999999999999999998731 000 0112334444433344555667899999999999
Q ss_pred hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC-
Q 027382 77 YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSLRAV---PTEDAQEFAQREN- 151 (224)
Q Consensus 77 ~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~---~~~~~~~~~~~~~- 151 (224)
+.......+..+|++|+|+|+++.... ...+++..+... ++| +++++||+|+.+.... ..+++++++..++
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 998888999999999999999985332 234444444432 577 7899999999742111 1235666777665
Q ss_pred ----CeEEEEcCCCCC--------CHHHHHHHHHH
Q 027382 152 ----LFFMETSALEAT--------NVETAFLTVLT 174 (224)
Q Consensus 152 ----~~~~~~s~~~~~--------~v~~~~~~i~~ 174 (224)
++++++||++|. |+.++++.+..
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 589999999993 45555555543
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.80 E-value=1.3e-19 Score=151.87 Aligned_cols=154 Identities=14% Similarity=0.129 Sum_probs=104.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcC--CCCCC------------------c----c-----CCcceeeEEEEEEECCe
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARN--EFSVD------------------S----K-----ATIGVEFQTKTLSIDHK 62 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~--~~~~~------------------~----~-----~~~~~~~~~~~~~~~~~ 62 (224)
....++|+++|++++|||||+++|++. .+... + . ...|.+.......+...
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 346799999999999999999999864 11110 0 0 00133332222334455
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChh---hHH---HHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCC
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQ---SFD---HMARWLDELRGHADKNIV-IMLIGNKCDLGSL 135 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~ 135 (224)
.+.+.+|||||++.+...+...+..+|++|+|+|+++.. +++ ...+++..+... ++| +++++||+|+.+.
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCeEEEEEEccccccC
Confidence 678999999999999999999999999999999999753 221 233333333322 455 8999999999632
Q ss_pred CCC----CHHHHHHHHHHcC-----CeEEEEcCCCCCCHHHH
Q 027382 136 RAV----PTEDAQEFAQREN-----LFFMETSALEATNVETA 168 (224)
Q Consensus 136 ~~~----~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~ 168 (224)
... ..+++.+++..++ ++++++||++|.|+.++
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 111 1234556666655 68999999999998754
No 173
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.79 E-value=7.8e-19 Score=153.24 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=85.5
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccC----------------CcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKA----------------TIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 75 (224)
.+...+|+++|+.|+|||||+++|++......... ..+.++......+....+.+++|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 45678999999999999999999985432211100 11334434444444456789999999999
Q ss_pred hhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382 76 RYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133 (224)
Q Consensus 76 ~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 133 (224)
.+...+..+++.+|++++|+|+++..... ...++..+... ++|+++++||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~---~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL---GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc---cCCEEEEecCCchh
Confidence 99999999999999999999998754333 23444444432 68999999999986
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.79 E-value=2.6e-21 Score=162.59 Aligned_cols=156 Identities=14% Similarity=0.151 Sum_probs=105.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEE
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAM 92 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 92 (224)
++..+|+++|++++|||||+++|.+..+.....+..+.+..... +......+.+|||||++.|..++...+..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~--v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYH--VETENGMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCC--CCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEE--EEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 35678999999999999999999876544333222222222222 2233457899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC--CCCHH--HHHHHHHHcC--CeEEEEcCCCCCCHH
Q 027382 93 LVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR--AVPTE--DAQEFAQREN--LFFMETSALEATNVE 166 (224)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~s~~~~~~v~ 166 (224)
+|+|+++..... ..+++..+.. .++|+++++||+|+.+.. .+..+ +...+...++ ++++++||++|.|++
T Consensus 80 LVVda~~g~~~q-T~e~l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 80 LVVAADDGVMPQ-TIEAIQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EEEETTTBSCTT-THHHHHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred EEeecccCccHH-HHHHHHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 999998832211 1122222322 268999999999996421 11000 0001112222 689999999999999
Q ss_pred HHHHHHHH
Q 027382 167 TAFLTVLT 174 (224)
Q Consensus 167 ~~~~~i~~ 174 (224)
++|+.+..
T Consensus 156 eLle~I~~ 163 (501)
T 1zo1_I 156 ELLDAILL 163 (501)
T ss_dssp THHHHTTT
T ss_pred hhhhhhhh
Confidence 99998764
No 175
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.79 E-value=5.2e-19 Score=133.39 Aligned_cols=156 Identities=18% Similarity=0.200 Sum_probs=98.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh----------hhhhhh
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE----------RYRAVT 81 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~ 81 (224)
.+...+|+++|++|||||||+++|.+..+...+.++.|.+.....+.+.+ .+.+||+||.. .+....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34567899999999999999999998764333344545554433333322 57899999963 233333
Q ss_pred HhHh---cCCCEEEEEEeCCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCC--CCHHHHHHHHHHcC--C
Q 027382 82 SAYY---RGAVGAMLVYDMTKRQSFD--HMARWLDELRGHADKNIVIMLIGNKCDLGSLRA--VPTEDAQEFAQREN--L 152 (224)
Q Consensus 82 ~~~~---~~~d~vi~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~--~ 152 (224)
..++ ..++++++++|++++.+.. .+..|+ .. .+.|++++.||+|+....+ .....+..++...+ +
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 4444 5789999999998854432 223333 22 2688999999999853211 11234455555544 4
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 153 FFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 153 ~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
.++++|++++.|++++++.+.+.+
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCHHHHHHHHHHHH
Confidence 688999999999999999887654
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.78 E-value=1.5e-19 Score=141.20 Aligned_cols=127 Identities=13% Similarity=0.073 Sum_probs=84.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhc-----
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVD-SKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYR----- 86 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~----- 86 (224)
...++|+++|.+|+|||||+++|++...... ..+..+.......+.. ....+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE--TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE--CCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 4689999999999999999999999775322 2122122223333333 4458999999998766544444433
Q ss_pred ----CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCC--CcEEEEEeCCCCCCCCCCCHH
Q 027382 87 ----GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKN--IVIMLIGNKCDLGSLRAVPTE 141 (224)
Q Consensus 87 ----~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ilv~nK~D~~~~~~~~~~ 141 (224)
.+|++++|++++..........|+..+.+....+ .|+++|+||+|+.+......+
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e 172 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE 172 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence 7899999999876442222345666666544322 489999999999644444443
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.77 E-value=2.1e-18 Score=151.02 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=86.8
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCC--CC------CCc---c-----CCcceeeEEEEEEECCeEEEEEEEeC
Q 027382 8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNE--FS------VDS---K-----ATIGVEFQTKTLSIDHKTVKAQIWDT 71 (224)
Q Consensus 8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~--~~------~~~---~-----~~~~~~~~~~~~~~~~~~~~~~l~D~ 71 (224)
+..+.+...+|+|+|++|+|||||+++|+... .. ... + ...+.+.......+.+..+.+.+|||
T Consensus 5 l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDT 84 (691)
T 1dar_A 5 VEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDT 84 (691)
T ss_dssp CCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECC
T ss_pred ccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEEC
Confidence 45567789999999999999999999998421 10 000 0 01122222222233334578999999
Q ss_pred CChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 72 AGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
||+..+...+..+++.+|++|+|+|+++..+......|.. +.. .++|+++|+||+|+..
T Consensus 85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 9999999999999999999999999998777666555543 333 2689999999999864
No 178
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.77 E-value=2.1e-18 Score=146.58 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=83.7
Q ss_pred CcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------ccCCcceeeEEEEEEECCeEEEEEE
Q 027382 9 NQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD--------------------SKATIGVEFQTKTLSIDHKTVKAQI 68 (224)
Q Consensus 9 ~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~l 68 (224)
+...+..++|+++|++|+|||||+++|+....... .....|.++......+.+..+.+.+
T Consensus 7 ~~~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~l 86 (529)
T 2h5e_A 7 LQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNL 86 (529)
T ss_dssp HHHHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEE
T ss_pred hhhhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEE
Confidence 34456789999999999999999999996421110 0011223332223334445678999
Q ss_pred EeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 69 WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 69 ~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
|||||+..+......++..+|++|+|+|+++..... ...++..+.. .++|+++++||+|+..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~~---~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 87 LDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTRL---RDTPILTFMNKLDRDI 148 (529)
T ss_dssp ECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHTT---TTCCEEEEEECTTSCC
T ss_pred EECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHHH---cCCCEEEEEcCcCCcc
Confidence 999999999888888999999999999998853322 2333333332 3689999999999864
No 179
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.76 E-value=7.5e-20 Score=157.51 Aligned_cols=152 Identities=24% Similarity=0.249 Sum_probs=83.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc-----------------------------cCCcceeeEEEEEEECCe
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS-----------------------------KATIGVEFQTKTLSIDHK 62 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 62 (224)
....++|+++|++++|||||+++|++....... ....|+++......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 456789999999999999999999752110000 001234444444445556
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChh---hH---HHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCC
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQ---SF---DHMARWLDELRGHADKNIV-IMLIGNKCDLGSL 135 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~ 135 (224)
...+.+|||||+..+...+...+..+|++|+|+|++++. ++ ......+..+... ++| +++|+||+|+.+.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMSW 330 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGTT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccccc
Confidence 688999999999999888888999999999999998632 11 1222222333332 455 8999999998642
Q ss_pred CCCC----HHHHHHHH-HHcCC-----eEEEEcCCCCCCHH
Q 027382 136 RAVP----TEDAQEFA-QRENL-----FFMETSALEATNVE 166 (224)
Q Consensus 136 ~~~~----~~~~~~~~-~~~~~-----~~~~~s~~~~~~v~ 166 (224)
.... ..++..+. ...++ +++++||++|.|+.
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 2111 12344444 44444 69999999999997
No 180
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.75 E-value=7.4e-19 Score=137.89 Aligned_cols=126 Identities=12% Similarity=0.083 Sum_probs=82.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhh-------HhH-
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVT-------SAY- 84 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~-------~~~- 84 (224)
...++|+++|.+|+|||||+|+|++........ ..+.+.......+....+.+.+|||||...+.... ..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 468999999999999999999999877532221 12233333333344455789999999976553221 112
Q ss_pred -hcCCCEEEEEEeCCChhhHHH-HHHHHHHHHhcCCCC--CcEEEEEeCCCCCCCCCCCH
Q 027382 85 -YRGAVGAMLVYDMTKRQSFDH-MARWLDELRGHADKN--IVIMLIGNKCDLGSLRAVPT 140 (224)
Q Consensus 85 -~~~~d~vi~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~p~ilv~nK~D~~~~~~~~~ 140 (224)
...+|+++||+|++.. ++.. ...|+..+.+....+ .|+++|+||+|+.+......
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~ 174 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY 174 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCH
Confidence 2478999999998653 3332 235666665543322 69999999999965443333
No 181
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.75 E-value=3.9e-19 Score=141.39 Aligned_cols=164 Identities=14% Similarity=0.244 Sum_probs=87.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcC-CCCCCccC------CcceeeEEEEEEE--CCeEEEEEEEeCCCh-------h
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARN-EFSVDSKA------TIGVEFQTKTLSI--DHKTVKAQIWDTAGQ-------E 75 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~-~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~l~D~~G~-------~ 75 (224)
....++|+|+|++|+|||||+++|++. .++..+.+ +.+.......+.+ .+....+.+||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 456689999999999999999999875 33332211 0011111111222 334568999999997 4
Q ss_pred hhhhhhH-------hHhc-------------CCCEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 76 RYRAVTS-------AYYR-------------GAVGAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 76 ~~~~~~~-------~~~~-------------~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
.+..+.. .++. .+++++|+.+++. .+++... +++..+ . ...|+++|+||.|+..
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l---~-~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI---H-NKVNIVPVIAKADTLT 169 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH---T-TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH---H-hcCCEEEEEEeCCCCC
Confidence 4444433 3332 2344666666543 1222222 233333 2 2578999999999864
Q ss_pred CCCC--CHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHHHh
Q 027382 135 LRAV--PTEDAQEFAQRENLFFMETSALEATNVETAFLTVLTEIYRIIS 181 (224)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~~~ 181 (224)
.+++ ..+++.+++..++++++++||+++ |++++|..+.+.+.+..+
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 3322 235677888899999999999999 999999999988865443
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.75 E-value=1.3e-18 Score=141.82 Aligned_cols=158 Identities=13% Similarity=0.122 Sum_probs=104.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcc---eeeEE------------------------------------
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIG---VEFQT------------------------------------ 54 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~---~~~~~------------------------------------ 54 (224)
...+|+|+|++|||||||+|+|.+..+.+....+.+ .....
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 444999999999999999999999776333222211 00000
Q ss_pred -------------EEEEE-CCeEEEEEEEeCCChhhh-------------hhhhHhHhcCCCEEEEEEeCCChhhHHHHH
Q 027382 55 -------------KTLSI-DHKTVKAQIWDTAGQERY-------------RAVTSAYYRGAVGAMLVYDMTKRQSFDHMA 107 (224)
Q Consensus 55 -------------~~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~ 107 (224)
..+.+ ......+.+|||||...+ ..+...++.++|++|+|++.++.+... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 00000 011235899999996654 667788899999999999876533221 2
Q ss_pred HHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHH
Q 027382 108 RWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 108 ~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
.|+..+......+.|+++|+||+|+.+......+.++.+....+.+|++++++++.++++.+..+.
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 344444554455789999999999976555545555555555678899999998877776655433
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.75 E-value=1.2e-17 Score=146.33 Aligned_cols=164 Identities=14% Similarity=0.202 Sum_probs=108.2
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-ccCCcceeeE-------EEEEEE------------------------
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVD-SKATIGVEFQ-------TKTLSI------------------------ 59 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~-------~~~~~~------------------------ 59 (224)
.+..++|+|+|.+|+|||||+|+|++....+. ..++...... ..+..+
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 45689999999999999999999998775432 2332210000 001111
Q ss_pred ----------------------CCeE--EEEEEEeCCChhhh---hhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHH
Q 027382 60 ----------------------DHKT--VKAQIWDTAGQERY---RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDE 112 (224)
Q Consensus 60 ----------------------~~~~--~~~~l~D~~G~~~~---~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~ 112 (224)
.... ..+.+|||||.... ...+..+++.+|++|+|+|++++.+......|...
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 0000 35899999996553 44566788999999999999987777666656544
Q ss_pred HHhcCCCCCcEEEEEeCCCCCCCCCCCHH---H-------HHHH----H-HH--------cCCeEEEEcCC---------
Q 027382 113 LRGHADKNIVIMLIGNKCDLGSLRAVPTE---D-------AQEF----A-QR--------ENLFFMETSAL--------- 160 (224)
Q Consensus 113 ~~~~~~~~~p~ilv~nK~D~~~~~~~~~~---~-------~~~~----~-~~--------~~~~~~~~s~~--------- 160 (224)
+.. .+.|+++|+||+|+.....++.+ + +.+. . .. ...+++++||+
T Consensus 226 l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~ 302 (695)
T 2j69_A 226 IKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN 302 (695)
T ss_dssp TTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred HHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence 433 25789999999998543211111 1 2111 1 11 12368999999
Q ss_pred -----CCCCHHHHHHHHHHHHHH
Q 027382 161 -----EATNVETAFLTVLTEIYR 178 (224)
Q Consensus 161 -----~~~~v~~~~~~i~~~i~~ 178 (224)
++.|+++++..+.+.+..
T Consensus 303 ~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 303 PQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TTCCCTTSSHHHHHHHHHHHHHH
T ss_pred chhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887644
No 184
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.75 E-value=9.7e-18 Score=134.22 Aligned_cols=163 Identities=13% Similarity=0.108 Sum_probs=97.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-CCccee---eEEE--------------------------------
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-ATIGVE---FQTK-------------------------------- 55 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~---~~~~-------------------------------- 55 (224)
.....+|+|+|.+|+|||||+|+|++..+.+... ...... ....
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 3466799999999999999999999987522211 000000 0000
Q ss_pred ---------------------EEE-ECCeEEEEEEEeCCChhh-------------hhhhhHhHhcCCCEEEEEEeCCCh
Q 027382 56 ---------------------TLS-IDHKTVKAQIWDTAGQER-------------YRAVTSAYYRGAVGAMLVYDMTKR 100 (224)
Q Consensus 56 ---------------------~~~-~~~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~vi~v~d~~~~ 100 (224)
.+. .......+.+|||||... +......++..+|++++|+|.++.
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 000 011124689999999642 556677889999999999998542
Q ss_pred hhH-HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCC------CCCHHHHHHHHH
Q 027382 101 QSF-DHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALE------ATNVETAFLTVL 173 (224)
Q Consensus 101 ~s~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~v~~~~~~i~ 173 (224)
... .....++..+. ..+.|+++|+||+|+.+......+.++......+..|+++++.. +.|+.+++..+.
T Consensus 181 ~~~~~~~~~i~~~~~---~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 181 DLANSDALQLAKEVD---PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp CSTTCSHHHHHHHHC---SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred chhhhHHHHHHHHhC---CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 211 11122333333 23689999999999975443223322211111225677776554 678888888776
Q ss_pred HHHH
Q 027382 174 TEIY 177 (224)
Q Consensus 174 ~~i~ 177 (224)
+.+.
T Consensus 258 ~~~~ 261 (315)
T 1jwy_B 258 LYFK 261 (315)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6553
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.74 E-value=1.4e-17 Score=137.25 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=106.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh----hhhhhH---hHhcCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER----YRAVTS---AYYRGAV 89 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~---~~~~~~d 89 (224)
.|+|+|++|||||||+++|.+........+..+.......+..+. ...+.+||+||... ...+.. ..+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 479999999999999999998753222222211222222233322 35688999999632 111222 2345799
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382 90 GAMLVYDMTKRQSFDHMARWLDELRGHAD--KNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVET 167 (224)
Q Consensus 90 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 167 (224)
.+++++|++ ...+..+..+...+..... ...|.++++||+|+... ...+++.+.+...+..++.+||+++.|+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999998 4566666666555544321 25789999999998642 223445555566678899999999999999
Q ss_pred HHHHHHHHHHH
Q 027382 168 AFLTVLTEIYR 178 (224)
Q Consensus 168 ~~~~i~~~i~~ 178 (224)
++..+.+.+.+
T Consensus 315 L~~~i~~~l~~ 325 (416)
T 1udx_A 315 LKEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999987754
No 186
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.74 E-value=7.7e-17 Score=141.37 Aligned_cols=120 Identities=15% Similarity=0.099 Sum_probs=85.1
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCC--CCCC-----------cc---CCcceeeEEEEEEECC-------eEEEEE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNE--FSVD-----------SK---ATIGVEFQTKTLSIDH-------KTVKAQ 67 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~--~~~~-----------~~---~~~~~~~~~~~~~~~~-------~~~~~~ 67 (224)
+.+...+|+|+|+.|+|||||+++|+... +... +. ...+.++......+.+ ..+.+.
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 45678899999999999999999997531 1100 00 0123333333333322 238999
Q ss_pred EEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 68 IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 68 l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
+|||||+..+...+..+++.+|++|+|+|+++.........|. .+.. .++|+++|+||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH---cCCCEEEEEeCCCccc
Confidence 9999999999889999999999999999999865554444443 2322 2689999999999854
No 187
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.72 E-value=3.1e-17 Score=143.67 Aligned_cols=120 Identities=15% Similarity=0.167 Sum_probs=83.8
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcC--CCCCC---cc-C----------CcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARN--EFSVD---SK-A----------TIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~--~~~~~---~~-~----------~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 74 (224)
+.+...+|+|+|++|+|||||+++|+.. ..... .. . ..+.+.......+....+.+.+|||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 3466889999999999999999999852 21100 00 0 0122222222223334578999999999
Q ss_pred hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 75 ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 75 ~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
..+...+..+++.+|++|+|+|+++..+......|.. +... ++|+++|+||+|+..
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---GVPRIVFVNKMDKLG 141 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence 9998889999999999999999998766665555543 3332 689999999999864
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=136.96 Aligned_cols=159 Identities=14% Similarity=0.175 Sum_probs=79.9
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc--------cCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh-----
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS--------KATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR----- 78 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----- 78 (224)
....++|+|+|++|+|||||++.|++....... .++.+...........+....+.+||++|.....
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 455678999999999999999999987653221 1111111111111112333578999999965431
Q ss_pred --hh------------------hHhHhcCCC--EEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCC
Q 027382 79 --AV------------------TSAYYRGAV--GAMLVYDMTKRQSFDHMA-RWLDELRGHADKNIVIMLIGNKCDLGSL 135 (224)
Q Consensus 79 --~~------------------~~~~~~~~d--~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 135 (224)
.+ ...++.+++ +++|+.+++. .+++... .|+..+.. ++|+++|+||+|+...
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~~----~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTP 182 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHTT----TSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHhc----cCcEEEEEEcccCccH
Confidence 11 122334444 4555544431 2333332 46665542 6899999999998643
Q ss_pred CCCCH--HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027382 136 RAVPT--EDAQEFAQRENLFFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 136 ~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
+.+.. .++.+++..++++++++|++++.++.++|..+...
T Consensus 183 ~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 183 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 33332 55677788889999999999999999877666543
No 189
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.70 E-value=3.7e-18 Score=135.84 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=108.9
Q ss_pred HHHHHHhcCCCC-CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChh-hHHHHH
Q 027382 30 QLLARFARNEFS-VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQ-SFDHMA 107 (224)
Q Consensus 30 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~ 107 (224)
+|+.++..+.+. ..+.+|+|..+. ..+..++ .+.+||+ ++.++.+++.+++++|++|+|||+++++ ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888887 788899885544 3222222 7899999 8889999999999999999999999987 788888
Q ss_pred HHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHH
Q 027382 108 RWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQREN--LFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 108 ~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
.|+..+.. .++|+++|+||+|+.+.+. .+++++++..++ .+++++||++|.|++++|..+..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99987765 3799999999999964322 245777777777 89999999999999999988754
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=1.1e-17 Score=137.65 Aligned_cols=85 Identities=19% Similarity=0.225 Sum_probs=48.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccC--CcceeeEEEEEE-------------------ECC-eEEEEEEEeCCC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKA--TIGVEFQTKTLS-------------------IDH-KTVKAQIWDTAG 73 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~-------------------~~~-~~~~~~l~D~~G 73 (224)
++|+++|.+|||||||+|+|.+........+ |.........+. +++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998763222222 111122211111 122 357899999999
Q ss_pred hhhh----hhhhH---hHhcCCCEEEEEEeCCCh
Q 027382 74 QERY----RAVTS---AYYRGAVGAMLVYDMTKR 100 (224)
Q Consensus 74 ~~~~----~~~~~---~~~~~~d~vi~v~d~~~~ 100 (224)
.... ..+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7532 22222 346899999999999874
No 191
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.68 E-value=1.4e-16 Score=136.06 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=89.4
Q ss_pred CCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-----------------C---ccCCcceeeEEEEEEECCeEEEEE
Q 027382 8 YNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSV-----------------D---SKATIGVEFQTKTLSIDHKTVKAQ 67 (224)
Q Consensus 8 ~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-----------------~---~~~~~~~~~~~~~~~~~~~~~~~~ 67 (224)
++....+.-||+|+|+.++|||||..+|+...-.. . -....|+++....+.+.+.++.++
T Consensus 24 ~~~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iN 103 (548)
T 3vqt_A 24 LEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVN 103 (548)
T ss_dssp HHHHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEE
T ss_pred hhhcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEE
Confidence 34455677899999999999999999997422110 0 011124555555555666778999
Q ss_pred EEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 68 IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 68 l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
|+||||+.+|.......++-+|++|+|+|+.+.-......-|...... ++|.++++||+|.+.
T Consensus 104 lIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~----~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 104 LLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR----ATPVMTFVNKMDREA 166 (548)
T ss_dssp EECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT----TCCEEEEEECTTSCC
T ss_pred EEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh----CCceEEEEecccchh
Confidence 999999999999999999999999999999986555555555333332 799999999999854
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.64 E-value=8.6e-17 Score=122.22 Aligned_cols=155 Identities=11% Similarity=0.084 Sum_probs=96.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCccee--------------eEEEEEEE----------------CCe
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVE--------------FQTKTLSI----------------DHK 62 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~ 62 (224)
....+|+++|.+|||||||+++|+...........+..+ .....+.. ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 356789999999999999999998752211000000000 00011111 112
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHH
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTED 142 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~ 142 (224)
...+.+|||+|+-.... .+....+.+++|+|+++.... ...+...+ +.|+++|+||+|+.+......++
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPEIF------RVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHHHH------HTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhhhh------hcCCEEEEecccCCcchhhHHHH
Confidence 35788999999511111 111257889999998764321 11111111 47789999999985432345666
Q ss_pred HHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027382 143 AQEFAQRE--NLFFMETSALEATNVETAFLTVLTEIYR 178 (224)
Q Consensus 143 ~~~~~~~~--~~~~~~~s~~~~~~v~~~~~~i~~~i~~ 178 (224)
+.+++... +++++++||++|.|++++|+++.+.+..
T Consensus 177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 77766654 4689999999999999999999877644
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.63 E-value=7.8e-15 Score=118.59 Aligned_cols=144 Identities=18% Similarity=0.126 Sum_probs=89.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccC--CcceeeEEEEEEECCe---------------EEEEEEEeCCChhhhh
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKA--TIGVEFQTKTLSIDHK---------------TVKAQIWDTAGQERYR 78 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~ 78 (224)
++|+++|.+|||||||+|+|.+........+ |...+.. .+.+.+. ...+.+||+||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 6899999999999999999998764332222 2222222 2233321 2579999999976432
Q ss_pred -------hhhHhHhcCCCEEEEEEeCCCh----------hhHHHHHHHHH------------------------------
Q 027382 79 -------AVTSAYYRGAVGAMLVYDMTKR----------QSFDHMARWLD------------------------------ 111 (224)
Q Consensus 79 -------~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~~~------------------------------ 111 (224)
......++.+|++++|+|+++. +.++.+..+..
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~ 160 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKF 160 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHH
Confidence 2233457899999999999862 22222221110
Q ss_pred ----------HHHh-------------------cC-CCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcCCC
Q 027382 112 ----------ELRG-------------------HA-DKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALE 161 (224)
Q Consensus 112 ----------~~~~-------------------~~-~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 161 (224)
.+.+ .. ....|+++++|+.|..-........+++++...+++++++||+.
T Consensus 161 ~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 161 ELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 0111 11 13599999999999642122335667888888899999999653
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.63 E-value=1.2e-16 Score=129.91 Aligned_cols=159 Identities=13% Similarity=0.153 Sum_probs=94.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCc------cCCc--------------------------------------
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDS------KATI-------------------------------------- 48 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~-------------------------------------- 48 (224)
....+|+|+|.+|||||||+|+|++..+.+.. .|+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999998763221 1110
Q ss_pred -----ceeeEEEEEEEC-CeEEEEEEEeCCChh-------------hhhhhhHhHhcCCCEEEE-EEeCCChhhHHHHHH
Q 027382 49 -----GVEFQTKTLSID-HKTVKAQIWDTAGQE-------------RYRAVTSAYYRGAVGAML-VYDMTKRQSFDHMAR 108 (224)
Q Consensus 49 -----~~~~~~~~~~~~-~~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~vi~-v~d~~~~~s~~~~~~ 108 (224)
+.......+.+. .....+.+|||||.. .+..+...++..++.+|+ |.+++....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 000000001111 113579999999942 445667777766665554 556554222222222
Q ss_pred HHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHH--HHHHcC-CeEEEEcCCCCCCHHHHHHHHHH
Q 027382 109 WLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQE--FAQREN-LFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 109 ~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
++..+ .+.+.|+++|+||+|+.+........++. +....+ .+++++||+++.|++++++.+..
T Consensus 189 i~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHH---CTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHh---CcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 33333 33478999999999996543322222111 000112 24678999999999999998876
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.63 E-value=3.4e-16 Score=139.76 Aligned_cols=123 Identities=19% Similarity=0.194 Sum_probs=89.1
Q ss_pred CCCcccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC----------------cc--CCcceeeEEEEEE----------
Q 027382 7 DYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVD----------------SK--ATIGVEFQTKTLS---------- 58 (224)
Q Consensus 7 ~~~~~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~--~~~~~~~~~~~~~---------- 58 (224)
.++.+.+...||+|+|+.++|||||+++|+....... .. .|+..........
T Consensus 11 ~~m~~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~ 90 (842)
T 1n0u_A 11 SLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIK 90 (842)
T ss_dssp HHHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCS
T ss_pred HHhhCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccc
Confidence 3454567789999999999999999999987421100 00 1111111111121
Q ss_pred --ECCeEEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382 59 --IDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133 (224)
Q Consensus 59 --~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 133 (224)
.++..+.+.+|||||+..|...+..+++.+|++|+|+|++++.+......|..... .++|+++|+||+|+.
T Consensus 91 ~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 91 QKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred ccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 13347899999999999999999999999999999999999877776655654433 268999999999985
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.60 E-value=1.2e-17 Score=127.50 Aligned_cols=155 Identities=14% Similarity=0.131 Sum_probs=90.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeE------------EEEEEEC-Ce-----------------
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQ------------TKTLSID-HK----------------- 62 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~----------------- 62 (224)
...++|+|+|.+|||||||+++|+...+...+.++++.++. ...+.++ +.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 35689999999999999999999986544333333322221 1111111 10
Q ss_pred --EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCH
Q 027382 63 --TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPT 140 (224)
Q Consensus 63 --~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 140 (224)
...+.++|++|.-... ..+-...+..+.++|......... .+...+ ..|.++|+||+|+.+......
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~------~~~~iiv~NK~Dl~~~~~~~~ 184 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGIM------KTADLIVINKIDLADAVGADI 184 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH------TTCSEEEEECGGGHHHHTCCH
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhHh------hcCCEEEEeccccCchhHHHH
Confidence 1134555555521000 011112344556666432111100 000111 367799999999865333456
Q ss_pred HHHHHHHHHc--CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027382 141 EDAQEFAQRE--NLFFMETSALEATNVETAFLTVLTEIYR 178 (224)
Q Consensus 141 ~~~~~~~~~~--~~~~~~~s~~~~~~v~~~~~~i~~~i~~ 178 (224)
+++.+++... +++++++||++|.|++++|+.+.+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 185 KKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 7777777764 5789999999999999999999877643
No 197
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.60 E-value=2e-16 Score=128.68 Aligned_cols=104 Identities=14% Similarity=0.081 Sum_probs=69.6
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHH
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTED 142 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~ 142 (224)
.+.+.+|||||.. ......+..+|++++|+|+...+....+.. . -...|+++|+||+|+...... ...
T Consensus 171 ~~~~iiiDTpGi~---~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~------~--~~~~p~ivVlNK~Dl~~~~~~-~~~ 238 (355)
T 3p32_A 171 GFDVILIETVGVG---QSEVAVANMVDTFVLLTLARTGDQLQGIKK------G--VLELADIVVVNKADGEHHKEA-RLA 238 (355)
T ss_dssp TCCEEEEEECSCS---SHHHHHHTTCSEEEEEEESSTTCTTTTCCT------T--SGGGCSEEEEECCCGGGHHHH-HHH
T ss_pred CCCEEEEeCCCCC---cHHHHHHHhCCEEEEEECCCCCccHHHHHH------h--HhhcCCEEEEECCCCcChhHH-HHH
Confidence 4678999999943 233445689999999999876544322211 0 124689999999998532111 111
Q ss_pred HHHHHHH---c-------CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027382 143 AQEFAQR---E-------NLFFMETSALEATNVETAFLTVLTEIYR 178 (224)
Q Consensus 143 ~~~~~~~---~-------~~~~~~~s~~~~~~v~~~~~~i~~~i~~ 178 (224)
..++... . +.+++++||++|.|++++++.+.+.+..
T Consensus 239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1222221 1 4689999999999999999999887755
No 198
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.59 E-value=5e-16 Score=135.02 Aligned_cols=115 Identities=19% Similarity=0.184 Sum_probs=86.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC--CC----Ccc----------CCcceeeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEF--SV----DSK----------ATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYRA 79 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~--~~----~~~----------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 79 (224)
.||+|+|+.++|||||..+|+...- .. ... ...|+++....+.+.+.++.++++|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4799999999999999999975211 10 000 0115666666666778888999999999999999
Q ss_pred hhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 80 VTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 80 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
.....++-+|++|+|+|+.+.-......-|...... ++|.++++||+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~----~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM----GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH----TCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc----CCCeEEEEecccccc
Confidence 999999999999999999985444443444333333 688999999999753
No 199
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.58 E-value=2.9e-15 Score=127.97 Aligned_cols=117 Identities=21% Similarity=0.255 Sum_probs=82.1
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCC---CCccCCcceeeEEEEEEECCe-----------------------E--
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFS---VDSKATIGVEFQTKTLSIDHK-----------------------T-- 63 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----------------------~-- 63 (224)
.+...+|+|+|.+|+|||||+|+|++..+. ....++. +.... +..+.. .
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T--~~~~~-i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~ 138 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT--DCFVA-VMHGETEGTVPGNALVVDPEKPFRKLNPFGNT 138 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCC--CSEEE-EECCSSSEEECCC------------------C
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCcc--ceEEE-EEECCcccccCCceeeecCcccHHHHhhhccc
Confidence 456789999999999999999999998763 2333322 11100 000000 0
Q ss_pred ---------------EEEEEEeCCChhh-----------hhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC
Q 027382 64 ---------------VKAQIWDTAGQER-----------YRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA 117 (224)
Q Consensus 64 ---------------~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~ 117 (224)
..+.+|||||... +......++..+|++|+|+|+++....+....++..+..
T Consensus 139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-- 216 (550)
T 2qpt_A 139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG-- 216 (550)
T ss_dssp CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--
T ss_pred ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--
Confidence 2588999999764 456677888999999999999875445555666665543
Q ss_pred CCCCcEEEEEeCCCCCC
Q 027382 118 DKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 118 ~~~~p~ilv~nK~D~~~ 134 (224)
.+.|+++|+||+|+.+
T Consensus 217 -~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 217 -HEDKIRVVLNKADMVE 232 (550)
T ss_dssp -CGGGEEEEEECGGGSC
T ss_pred -cCCCEEEEEECCCccC
Confidence 2588999999999864
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.55 E-value=1.6e-14 Score=117.29 Aligned_cols=151 Identities=16% Similarity=0.107 Sum_probs=92.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccC--CcceeeEEEEEEECC-------------------eEEEEEEEeCCCh
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKA--TIGVEFQTKTLSIDH-------------------KTVKAQIWDTAGQ 74 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~l~D~~G~ 74 (224)
++|+++|.+|||||||+|+|.+........+ |...+.... .+.. ....+.+||+||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5799999999999999999998643222111 111222221 2221 3457999999996
Q ss_pred hhh-------hhhhHhHhcCCCEEEEEEeCCCh----------hhHHHHHHH---H------------------------
Q 027382 75 ERY-------RAVTSAYYRGAVGAMLVYDMTKR----------QSFDHMARW---L------------------------ 110 (224)
Q Consensus 75 ~~~-------~~~~~~~~~~~d~vi~v~d~~~~----------~s~~~~~~~---~------------------------ 110 (224)
... .......++.+|++++|+|+++. +.+..+..+ +
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~ 159 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRE 159 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchh
Confidence 543 22234457899999999999851 111111110 0
Q ss_pred ------------HHHHhc-------------------C-CCCCcEEEEEeCCCC--CCC-CCCCHHHHHHHHHHcCCeEE
Q 027382 111 ------------DELRGH-------------------A-DKNIVIMLIGNKCDL--GSL-RAVPTEDAQEFAQRENLFFM 155 (224)
Q Consensus 111 ------------~~~~~~-------------------~-~~~~p~ilv~nK~D~--~~~-~~~~~~~~~~~~~~~~~~~~ 155 (224)
..+.+. . ....|+++++||.|. .+. +......+++++...+++++
T Consensus 160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv 239 (368)
T 2dby_A 160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVV 239 (368)
T ss_dssp GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEE
Confidence 001110 0 123799999999974 221 12345678888888899999
Q ss_pred EEcCCCCCCHHHH
Q 027382 156 ETSALEATNVETA 168 (224)
Q Consensus 156 ~~s~~~~~~v~~~ 168 (224)
++||+.+.++.++
T Consensus 240 ~iSAk~E~el~eL 252 (368)
T 2dby_A 240 VVSARLEAELAEL 252 (368)
T ss_dssp EECHHHHHHHHTS
T ss_pred EeechhHHHHHHh
Confidence 9999875544433
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.55 E-value=2.8e-14 Score=125.51 Aligned_cols=119 Identities=14% Similarity=0.151 Sum_probs=84.0
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCC--------CCCC--c------cCCcceeeEEEEEEEC-------CeEEEEE
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNE--------FSVD--S------KATIGVEFQTKTLSID-------HKTVKAQ 67 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~--------~~~~--~------~~~~~~~~~~~~~~~~-------~~~~~~~ 67 (224)
+.++.-||+|+|+.++|||||..+|+... .... + ....|+++....+.+. +..+.++
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 34678899999999999999999997421 1000 0 1112444444443332 2368999
Q ss_pred EEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382 68 IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133 (224)
Q Consensus 68 l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 133 (224)
++|||||.+|.......++-+|++|+|+|+.+.-......-|...... ++|.++|+||+|..
T Consensus 89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQ 150 (709)
T ss_dssp EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSST
T ss_pred EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEcccccc
Confidence 999999999999999999999999999999986555544455444444 69999999999975
No 202
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.54 E-value=2.8e-15 Score=121.48 Aligned_cols=104 Identities=10% Similarity=-0.008 Sum_probs=63.2
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHH
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTED 142 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~ 142 (224)
.+.+.++||+|... ........+|++++|+|++.+.....+.. .+ ...|.++|+||+|+.+.... ...
T Consensus 166 ~~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~ 233 (349)
T 2www_A 166 GYDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRI 233 (349)
T ss_dssp TCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHH
T ss_pred CCCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHH
Confidence 45789999999531 12445779999999999987543222211 11 14578999999998531100 011
Q ss_pred HHHHHH----------HcCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027382 143 AQEFAQ----------RENLFFMETSALEATNVETAFLTVLTEIYR 178 (224)
Q Consensus 143 ~~~~~~----------~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~ 178 (224)
..++.. .+..+++.+|+++|.|+++++++|.+.+..
T Consensus 234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 222221 123568999999999999999999877643
No 203
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.51 E-value=5.2e-13 Score=108.52 Aligned_cols=155 Identities=16% Similarity=0.113 Sum_probs=97.0
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhHhH
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER-------YRAVTSAY 84 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~ 84 (224)
.+...+|+++|.|+||||||+|+|.+........+..+.+.....+.+ .+..+.++|+||... ........
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~--~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY--KGAKIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE--TTEEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEe--CCcEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 345678999999999999999999997755555554344443334444 446789999999321 12223445
Q ss_pred hcCCCEEEEEEeCCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC--------CCCCCHHHHHHHHHHcCCeEE
Q 027382 85 YRGAVGAMLVYDMTKRQS-FDHMARWLDELRGHADKNIVIMLIGNKCDLGS--------LRAVPTEDAQEFAQRENLFFM 155 (224)
Q Consensus 85 ~~~~d~vi~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~ 155 (224)
++.+|++++|+|+++|.. .+.+...+..+.... ...|.+++.||.|... ....+.++++.+...+.+.--
T Consensus 147 i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~k 225 (376)
T 4a9a_A 147 ARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSA 225 (376)
T ss_dssp HHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSE
T ss_pred HHhcCccccccccCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCC
Confidence 789999999999998643 333333333322111 3567888999999732 134566777777776655322
Q ss_pred EEcCCCCCCHHHHH
Q 027382 156 ETSALEATNVETAF 169 (224)
Q Consensus 156 ~~s~~~~~~v~~~~ 169 (224)
++-...+...+++.
T Consensus 226 pv~~~~nv~eddl~ 239 (376)
T 4a9a_A 226 EIAFRCDATVDDLI 239 (376)
T ss_dssp EEEECSCCCHHHHH
T ss_pred CeeecccCCHHHHH
Confidence 22223344445443
No 204
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.48 E-value=1.2e-13 Score=107.40 Aligned_cols=108 Identities=13% Similarity=-0.027 Sum_probs=66.7
Q ss_pred EEEEEEeCCChhhhhhhhH------hHhcCCCEEEEEEeCCCh---hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC
Q 027382 64 VKAQIWDTAGQERYRAVTS------AYYRGAVGAMLVYDMTKR---QSFDHMARWLDELRGHADKNIVIMLIGNKCDLGS 134 (224)
Q Consensus 64 ~~~~l~D~~G~~~~~~~~~------~~~~~~d~vi~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 134 (224)
+.+.+|||||......... ..+.. +++++++|+... ..+.....+...... ..+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEecccccc
Confidence 5799999999876543322 23456 888889987542 222222111111111 12589999999999864
Q ss_pred CCCCCHHHHHHH----------------------------HHHcC--CeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 135 LRAVPTEDAQEF----------------------------AQREN--LFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 135 ~~~~~~~~~~~~----------------------------~~~~~--~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
... .+++.++ +...+ .+++++||+++.|++++++++.+.+
T Consensus 186 ~~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 186 EEE--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHH--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccc--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 221 1111111 23333 4799999999999999999988665
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.47 E-value=1.6e-14 Score=116.76 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=64.9
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC--H
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP--T 140 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~--~ 140 (224)
.+.+.+|||||...... .....+|++++|+|++..+....+.. .. .+.|.++|+||+|+.+..... .
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence 46799999999654332 24689999999999976533211111 01 136789999999986321110 0
Q ss_pred HHHHHHHHHc-------CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382 141 EDAQEFAQRE-------NLFFMETSALEATNVETAFLTVLTEIY 177 (224)
Q Consensus 141 ~~~~~~~~~~-------~~~~~~~s~~~~~~v~~~~~~i~~~i~ 177 (224)
+++++..... ..+++++||++|.|++++++.+.+.+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1222222222 346899999999999999999988664
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.45 E-value=4e-13 Score=117.66 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=97.0
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CccCCccee---------------------------------------
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSV-DSKATIGVE--------------------------------------- 51 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~--------------------------------------- 51 (224)
.-...+|+|+|.+++|||||+|+|++..+.+ ....++...
T Consensus 48 ~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 48 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 3466799999999999999999999977622 211111000
Q ss_pred ---------eEEEEEEEC-CeEEEEEEEeCCChh-------------hhhhhhHhHh-cCCCEEEEEEeCCChhhHHHHH
Q 027382 52 ---------FQTKTLSID-HKTVKAQIWDTAGQE-------------RYRAVTSAYY-RGAVGAMLVYDMTKRQSFDHMA 107 (224)
Q Consensus 52 ---------~~~~~~~~~-~~~~~~~l~D~~G~~-------------~~~~~~~~~~-~~~d~vi~v~d~~~~~s~~~~~ 107 (224)
.....+.+. -....+.++||||-. .+..+...++ ..+|++++|+|++.........
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 000011110 011247899999932 2334444454 5789999999998743333322
Q ss_pred HHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH----cC-CeEEEEcCCCCCCHHHHHHHHHHH
Q 027382 108 RWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR----EN-LFFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 108 ~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
.++..+. ..+.|+++|+||+|+.+....... +.+ ... .+ .+++.+||++|.|++++++.+...
T Consensus 208 ~ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHC---TTCSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHH---hcCCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 3333343 336899999999999754433222 111 111 12 246778999999999999888763
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.37 E-value=4.5e-13 Score=108.00 Aligned_cols=104 Identities=12% Similarity=0.074 Sum_probs=63.3
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHH
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTED 142 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~ 142 (224)
.+.+.++||+|.... .......+|.+++|+|+...+....+... +. ..+.++++||+|+..........
T Consensus 147 ~~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence 467999999995422 12345789999999998754322111111 11 23457778999974322111122
Q ss_pred HHHHHHH----c------CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027382 143 AQEFAQR----E------NLFFMETSALEATNVETAFLTVLTEIY 177 (224)
Q Consensus 143 ~~~~~~~----~------~~~~~~~s~~~~~~v~~~~~~i~~~i~ 177 (224)
.+++... . ..+++.+|++++.|++++++.|.+...
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3333321 1 356889999999999999999887653
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.37 E-value=7.2e-13 Score=105.29 Aligned_cols=97 Identities=11% Similarity=0.011 Sum_probs=78.9
Q ss_pred hhhhhhhhHhHhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC-HHHHHHHHHHcC
Q 027382 74 QERYRAVTSAYYRGAVGAMLVYDMTKRQ-SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP-TEDAQEFAQREN 151 (224)
Q Consensus 74 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~~~~ 151 (224)
++.+..+.+.+++++|++++|+|+++++ ++..+.+|+..+.. .++|+++|+||+|+.+...+. .++..+++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 5667777888999999999999999986 88888899887765 379999999999996432111 345566777788
Q ss_pred CeEEEEcCCCCCCHHHHHHHHH
Q 027382 152 LFFMETSALEATNVETAFLTVL 173 (224)
Q Consensus 152 ~~~~~~s~~~~~~v~~~~~~i~ 173 (224)
.+++++||++|.|++++|..+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 8999999999999999998764
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.34 E-value=3.1e-11 Score=98.65 Aligned_cols=89 Identities=12% Similarity=0.155 Sum_probs=61.3
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCccCCcceeeEEEEEEECCe---------------EEEEEEEeCCCh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEF-SVDSKATIGVEFQTKTLSIDHK---------------TVKAQIWDTAGQ 74 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~ 74 (224)
..+...+|+++|.+|||||||+|+|.+... .....|+.+.....-.+.+.+. ...+.+||+||.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 344567899999999999999999999765 4444443333333333444431 136899999993
Q ss_pred h-------hhhhhhHhHhcCCCEEEEEEeCCC
Q 027382 75 E-------RYRAVTSAYYRGAVGAMLVYDMTK 99 (224)
Q Consensus 75 ~-------~~~~~~~~~~~~~d~vi~v~d~~~ 99 (224)
. .+...+...++.+|++++|+|+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 233345566789999999999864
No 210
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.33 E-value=1.4e-12 Score=96.47 Aligned_cols=103 Identities=8% Similarity=-0.013 Sum_probs=69.2
Q ss_pred CCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHH----HHHhcC-CCCCcEEEEEeCC-CCCCCCCCCHHHHH
Q 027382 71 TAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLD----ELRGHA-DKNIVIMLIGNKC-DLGSLRAVPTEDAQ 144 (224)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~----~~~~~~-~~~~p~ilv~nK~-D~~~~~~~~~~~~~ 144 (224)
.+|++.++.+|..|+.++|++|||+|.+|.+-++ .+..+. .+.+.. ..+.|++|++||. |++ ...+..++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHH
Confidence 3478899999999999999999999999975443 444332 222221 2578999999995 675 445666665
Q ss_pred HHHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 145 EFAQR----ENLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 145 ~~~~~----~~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
+...- ....+..|||.+|+|+.+.++|+...+
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 54332 233578999999999999999998655
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.29 E-value=3.5e-12 Score=104.12 Aligned_cols=91 Identities=12% Similarity=0.155 Sum_probs=53.0
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCe---------------EEEEEEEeCCChh
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHK---------------TVKAQIWDTAGQE 75 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~ 75 (224)
.....++|+++|.+|||||||+|+|.+........++.+.......+.+.+. ...+.+||+||..
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 3445688999999999999999999987664444443333333333334321 2359999999976
Q ss_pred hhhh-------hhHhHhcCCCEEEEEEeCCChh
Q 027382 76 RYRA-------VTSAYYRGAVGAMLVYDMTKRQ 101 (224)
Q Consensus 76 ~~~~-------~~~~~~~~~d~vi~v~d~~~~~ 101 (224)
.... .+..+++.+|++++|+|+++.+
T Consensus 98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 5432 4567789999999999998643
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.21 E-value=2.5e-11 Score=94.17 Aligned_cols=104 Identities=8% Similarity=0.004 Sum_probs=73.7
Q ss_pred CCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHH---HHHHHHHHHHhcC-CCCCcEEEEEeC-CCCCCCCCCCHHHHHH
Q 027382 71 TAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFD---HMARWLDELRGHA-DKNIVIMLIGNK-CDLGSLRAVPTEDAQE 145 (224)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~---~~~~~~~~~~~~~-~~~~p~ilv~nK-~D~~~~~~~~~~~~~~ 145 (224)
.+|++.++.+|..|+.++|++|||+|.+|.+.++ ++.+....+.+.. ..+.|++|++|| .|++ ...+..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp--~Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc--CCCCHHHHHH
Confidence 4678899999999999999999999999976543 2222222232221 247999999996 6875 3456666655
Q ss_pred HHHH----cCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027382 146 FAQR----ENLFFMETSALEATNVETAFLTVLTEI 176 (224)
Q Consensus 146 ~~~~----~~~~~~~~s~~~~~~v~~~~~~i~~~i 176 (224)
...- ....+..|||.+|+|+.+.++|+.+.+
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 4332 223478999999999999999998766
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.97 E-value=3e-09 Score=86.64 Aligned_cols=96 Identities=17% Similarity=0.232 Sum_probs=72.7
Q ss_pred ChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHH----HH
Q 027382 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF----AQ 148 (224)
Q Consensus 73 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~----~~ 148 (224)
..+.|.+++..+.+.+|++++|+|+++++ ..|...+.+... +.|+++|+||+|+.+. ....++++++ +.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence 45788999999999999999999999853 334444444333 6899999999999653 3344444444 56
Q ss_pred HcCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 027382 149 RENL---FFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 149 ~~~~---~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
..+. .++.+||++|.|++++++.+...
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6677 79999999999999999888653
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.95 E-value=7.7e-11 Score=96.09 Aligned_cols=137 Identities=15% Similarity=0.118 Sum_probs=79.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC-----C-CCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh--------hhh
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN-----E-FSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR--------AVT 81 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~ 81 (224)
.+|+++|.+|+|||||+|+|++. . ......+ +++.....+.+... +.++||||-.... ...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999986 2 2122222 34444444444432 7899999932111 112
Q ss_pred HhHh--cCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcC
Q 027382 82 SAYY--RGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSA 159 (224)
Q Consensus 82 ~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (224)
..++ +..+.++++++....-.+..+.. +......+.|+++++||.|....... ....+.+.+..+..+.+.++
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence 2222 67899999999842111111110 11122346899999999998542222 23344455556665655555
Q ss_pred CCC
Q 027382 160 LEA 162 (224)
Q Consensus 160 ~~~ 162 (224)
.+.
T Consensus 313 ~~~ 315 (369)
T 3ec1_A 313 RYA 315 (369)
T ss_dssp GGT
T ss_pred hhh
Confidence 443
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.93 E-value=9e-10 Score=92.79 Aligned_cols=152 Identities=14% Similarity=0.074 Sum_probs=84.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHh------cCCCCCC----ccCC-----------cceeeEEEEEE-------------
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFA------RNEFSVD----SKAT-----------IGVEFQTKTLS------------- 58 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~------~~~~~~~----~~~~-----------~~~~~~~~~~~------------- 58 (224)
.....|+++|.+||||||++++|. +...... +.+. .+..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998 3322110 0000 01111110000
Q ss_pred ECCeEEEEEEEeCCChhhhh-hhh---HhH--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcE-EEEEeCCC
Q 027382 59 IDHKTVKAQIWDTAGQERYR-AVT---SAY--YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVI-MLIGNKCD 131 (224)
Q Consensus 59 ~~~~~~~~~l~D~~G~~~~~-~~~---~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D 131 (224)
+....+.+.++||||..... .++ ... ...+|.+++|+|+...... ......+.+ .+|+ ++|+||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~----~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD----KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH----HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh----hcCceEEEEeCCc
Confidence 00134679999999954221 111 111 2378999999999874321 122222332 2554 88899999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCeE------------------EEEcCCCCCC-HHHHHHHHHHH
Q 027382 132 LGSLRAVPTEDAQEFAQRENLFF------------------METSALEATN-VETAFLTVLTE 175 (224)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~-v~~~~~~i~~~ 175 (224)
...... .+.......+.|+ +.+|+.+|.| +.++++++.+.
T Consensus 252 ~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 863221 1222333444442 2357888888 88888777654
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.85 E-value=1.5e-08 Score=83.49 Aligned_cols=62 Identities=24% Similarity=0.507 Sum_probs=36.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccC--CcceeeEEEEEEEC--CeEEEEEEEeCCCh
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKA--TIGVEFQTKTLSID--HKTVKAQIWDTAGQ 74 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~l~D~~G~ 74 (224)
...++++|+|++|+|||||++.|++..+...... ..+.......+... .....+.++|++|-
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence 3456799999999999999999998754211111 11222222222222 22347889999873
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.84 E-value=1.4e-10 Score=94.44 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=74.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-----CCccCCcceeeEEEEEEECCeEEEEEEEeCCChhhhh--------hhhH
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFS-----VDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQERYR--------AVTS 82 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~ 82 (224)
.+|+++|.+|+|||||+|+|++.... .......+++.....+.+... +.++||||-.... ....
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 57999999999999999999986311 111122244444444444333 7899999943221 1111
Q ss_pred hH--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHH-HHHHHcCCeEEEEc
Q 027382 83 AY--YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQ-EFAQRENLFFMETS 158 (224)
Q Consensus 83 ~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~~s 158 (224)
.+ .+..+.++++++....-....+.. +......+.|+++++||.|...... .+... .+.+..+..+++.+
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~--~~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK--LEKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE--HHHHHHHHHHHBTTTBCSSC
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc--HHHHHHHHHHHhCCccCCCc
Confidence 11 257788999998742111111110 1112234689999999999854222 33333 44445555444444
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.82 E-value=3.5e-08 Score=76.96 Aligned_cols=137 Identities=16% Similarity=0.171 Sum_probs=69.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-------CCcceeeEEEEEEECC--eEEEEEEEeCCChhh---------
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFSVDSK-------ATIGVEFQTKTLSIDH--KTVKAQIWDTAGQER--------- 76 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~l~D~~G~~~--------- 76 (224)
.++++|+|+.|+|||||++.|++...+.... ...........+.... -...+.++|++|-..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 5899999999999999999999854322110 0000001111111111 123678999987211
Q ss_pred -hhhh----hHh--------------HhcCCCEEEEEEeCCC-hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382 77 -YRAV----TSA--------------YYRGAVGAMLVYDMTK-RQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136 (224)
Q Consensus 77 -~~~~----~~~--------------~~~~~d~vi~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 136 (224)
.... ... .+..+++.++++|... +-.... ...+..+.+ ..++++|++|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~----~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK----VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT----TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh----cCcEEEEEeccccCCHH
Confidence 0000 000 1234688899998653 111111 233444443 28899999999975321
Q ss_pred CC--CHHHHHHHHHHcCCeEEE
Q 027382 137 AV--PTEDAQEFAQRENLFFME 156 (224)
Q Consensus 137 ~~--~~~~~~~~~~~~~~~~~~ 156 (224)
+. ....+.+....+++.+++
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 11 011223334456666554
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.78 E-value=1.2e-08 Score=83.07 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=70.3
Q ss_pred ChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHH----HH
Q 027382 73 GQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEF----AQ 148 (224)
Q Consensus 73 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~----~~ 148 (224)
.++.|.+.+..++..++++++|+|++++.+ .|...+.+... +.|+++|+||+|+.+. ....+.+.++ +.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence 477899999999999999999999999663 23222333222 6899999999999653 2334444444 55
Q ss_pred HcCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 027382 149 RENL---FFMETSALEATNVETAFLTVLTE 175 (224)
Q Consensus 149 ~~~~---~~~~~s~~~~~~v~~~~~~i~~~ 175 (224)
..+. .++.+||++|.|++++++.+.+.
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 5666 68999999999999999888654
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.75 E-value=1.3e-08 Score=79.89 Aligned_cols=102 Identities=13% Similarity=0.038 Sum_probs=70.7
Q ss_pred EEeCCChh-hhhhhhHhHhcCCCEEEEEEeCCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHH
Q 027382 68 IWDTAGQE-RYRAVTSAYYRGAVGAMLVYDMTKRQSFD--HMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQ 144 (224)
Q Consensus 68 l~D~~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~ 144 (224)
+-..||+. .........+..+|+++.|+|+.++.+.. .+.+++ .+.|.++|+||+|+.+.. ..+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence 34578876 44556777889999999999999987664 344443 268999999999996411 112233
Q ss_pred HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027382 145 EFAQRENLFFMETSALEATNVETAFLTVLTEIYRI 179 (224)
Q Consensus 145 ~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~i~~~ 179 (224)
++.+..+.+++.+||+++.|+.+++..+.+.+...
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 44455678899999999999999999887766544
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.61 E-value=4.4e-07 Score=74.72 Aligned_cols=157 Identities=11% Similarity=0.095 Sum_probs=81.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-CCcceeeEEEEEEE-CCeEEEEEEEeCCChhhhhhhh-----HhHhc
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-ATIGVEFQTKTLSI-DHKTVKAQIWDTAGQERYRAVT-----SAYYR 86 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~-----~~~~~ 86 (224)
....++|+|++|+|||||+|.|.+...+.... ...+.......+.. ....-.+.++|++|-....... ...+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 44579999999999999999999854322211 11111110000111 1111257899999843211111 11233
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC-------CCCCCCHHHH----HHHH----HHcC
Q 027382 87 GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG-------SLRAVPTEDA----QEFA----QREN 151 (224)
Q Consensus 87 ~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-------~~~~~~~~~~----~~~~----~~~~ 151 (224)
..+.+++ ++..... ..-......+... +.|+++|.||.|+. .-......++ +++. .+.+
T Consensus 148 ~~~~~~~-lS~G~~~--kqrv~la~aL~~~---~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 148 EYDFFII-ISATRFK--KNDIDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp GCSEEEE-EESSCCC--HHHHHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCeEE-eCCCCcc--HHHHHHHHHHHhc---CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4465554 6665211 1111122222221 58999999999862 1112233333 3333 1222
Q ss_pred ---CeEEEEcC--CCCCCHHHHHHHHHHHH
Q 027382 152 ---LFFMETSA--LEATNVETAFLTVLTEI 176 (224)
Q Consensus 152 ---~~~~~~s~--~~~~~v~~~~~~i~~~i 176 (224)
..++.+|+ .++.|++++.+.+.+.+
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 25788999 45556988888877665
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.58 E-value=4.4e-08 Score=76.89 Aligned_cols=58 Identities=22% Similarity=0.427 Sum_probs=36.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCCh
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQ 74 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 74 (224)
+..++|+++|.+|+|||||+|+|.+........ ..+.+.....+.+.. .+.++||||-
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtpG~ 175 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWVKVGK---ELELLDTPGI 175 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEEEEeCC---CEEEEECcCc
Confidence 467899999999999999999999876432221 123333333333322 5789999994
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.50 E-value=1.6e-07 Score=77.70 Aligned_cols=136 Identities=18% Similarity=0.110 Sum_probs=77.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc------CCCCC----CccC-----------CcceeeEEEEEEEC------------
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFAR------NEFSV----DSKA-----------TIGVEFQTKTLSID------------ 60 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~------~~~~~----~~~~-----------~~~~~~~~~~~~~~------------ 60 (224)
.+..|+++|.+|+||||++..|.. ..... .+.+ ..+..+.......+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999998874 11100 0000 00111111000000
Q ss_pred -CeEEEEEEEeCCChhhh-----hhhh-HhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 027382 61 -HKTVKAQIWDTAGQERY-----RAVT-SAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLG 133 (224)
Q Consensus 61 -~~~~~~~l~D~~G~~~~-----~~~~-~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 133 (224)
...+.+.++||+|.... ..+. ......+|.+++|+|+....... .....+.+. -.+..+|+||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~---~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA---TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS---CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh---CCCeEEEEECCCCc
Confidence 01267899999994321 1111 11233689999999998643322 222334332 23467889999975
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEEEcC
Q 027382 134 SLRAVPTEDAQEFAQRENLFFMETSA 159 (224)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (224)
. ....+.......+.|+..++.
T Consensus 253 ~----~gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 253 A----KGGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp S----SHHHHHHHHHTTCCCEEEEEC
T ss_pred c----cccHHHHHHHHHCCCEEEEEc
Confidence 2 345566677778888776664
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.49 E-value=4.9e-08 Score=75.80 Aligned_cols=56 Identities=23% Similarity=0.330 Sum_probs=35.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChh
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQE 75 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 75 (224)
++++++|.+|+|||||+|+|.+...... .++.|.+.....+.+. ..+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLE---NGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeC---CCEEEEECCCcc
Confidence 7999999999999999999998765322 2222444333333332 257899999954
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.33 E-value=1.9e-06 Score=71.44 Aligned_cols=133 Identities=18% Similarity=0.142 Sum_probs=72.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCC------CC-CC---ccCC-----------cceeeEEE--------EE--E-E-C
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNE------FS-VD---SKAT-----------IGVEFQTK--------TL--S-I-D 60 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~------~~-~~---~~~~-----------~~~~~~~~--------~~--~-~-~ 60 (224)
....|+++|.+|+||||++..|.... .. .. +.+. .+..+... .+ . + .
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 34679999999999999999987621 10 00 0000 00000000 00 0 0 1
Q ss_pred CeEEEEEEEeCCChhhhhh-h---hHhH--hcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCC-c-EEEEEeCCCC
Q 027382 61 HKTVKAQIWDTAGQERYRA-V---TSAY--YRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNI-V-IMLIGNKCDL 132 (224)
Q Consensus 61 ~~~~~~~l~D~~G~~~~~~-~---~~~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ilv~nK~D~ 132 (224)
...+.+.++||||...... + .... +..+|.+++|+|+..... .......+.. .. | ..+|+||+|.
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE----AVGEIGSIIVTKLDG 250 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT----TSCSCEEEEEECSSS
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh----cccCCeEEEEeCCCC
Confidence 1346789999999543211 1 1111 226899999999875432 2222223332 34 5 8899999997
Q ss_pred CCCCCCCHHHHHHHHHHcCCeEEEE
Q 027382 133 GSLRAVPTEDAQEFAQRENLFFMET 157 (224)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (224)
.. ....+..+....+.++..+
T Consensus 251 ~~----~~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 251 SA----KGGGALSAVAETKAPIKFI 271 (432)
T ss_dssp CS----TTHHHHHHHHHSSCCEEEE
T ss_pred cc----chHHHHHHHHHHCCCEEEe
Confidence 42 1223445666777776555
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.30 E-value=8.3e-07 Score=73.42 Aligned_cols=140 Identities=16% Similarity=0.105 Sum_probs=79.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc------CCCCC----CccC-----------CcceeeEEEEE-------------EE
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFAR------NEFSV----DSKA-----------TIGVEFQTKTL-------------SI 59 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~------~~~~~----~~~~-----------~~~~~~~~~~~-------------~~ 59 (224)
....|+++|++||||||++..|.. ..... .+.+ ..+........ ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 356789999999999999998873 11100 0000 00111110000 00
Q ss_pred CCeEEEEEEEeCCChhh--h----hhhhHh--HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 027382 60 DHKTVKAQIWDTAGQER--Y----RAVTSA--YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCD 131 (224)
Q Consensus 60 ~~~~~~~~l~D~~G~~~--~----~~~~~~--~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 131 (224)
....+.+.++||||... . -..... .....+.+++|+|+........ ....+.+. -.+..+|+||.|
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD 249 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMD 249 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEeccc
Confidence 11246788999999533 1 111111 1225689999999986433222 22333322 234688999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCH
Q 027382 132 LGSLRAVPTEDAQEFAQRENLFFMETSALEATNV 165 (224)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 165 (224)
.. .....+.......+.|+..++. |+++
T Consensus 250 ~~----a~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 250 GT----AKGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp GC----SCHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred cc----ccchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 75 2455667777778899877765 5544
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.29 E-value=8.7e-07 Score=76.00 Aligned_cols=64 Identities=16% Similarity=0.094 Sum_probs=40.9
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-CCcceeeEEEEE--EE-CCeEEEEEEEeCCChh
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSK-ATIGVEFQTKTL--SI-DHKTVKAQIWDTAGQE 75 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~--~~-~~~~~~~~l~D~~G~~ 75 (224)
....++|+|+|.+|+|||||+|+|++........ .+.+.+...... .+ ......+.++||||-.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 4578899999999999999999999976421111 111222222111 11 2234578999999943
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.23 E-value=2e-06 Score=67.85 Aligned_cols=93 Identities=15% Similarity=0.030 Sum_probs=57.3
Q ss_pred eEEEEEEEeCCChhh--hh-hhhH-----hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCC
Q 027382 62 KTVKAQIWDTAGQER--YR-AVTS-----AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDL 132 (224)
Q Consensus 62 ~~~~~~l~D~~G~~~--~~-~~~~-----~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~ 132 (224)
..+.+.++||||... .. .+.. .....+|.+++|+|+.... ........+.+ ..+ ..+|.||.|.
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDG 251 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCC
Confidence 346789999999655 21 1111 1244789999999987432 22222233332 244 6788999997
Q ss_pred CCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVET 167 (224)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 167 (224)
.. ....+.......+.|+..++ +|+++++
T Consensus 252 ~~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 252 TA----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp CT----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred Cc----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 42 34456677788888877765 4555543
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.17 E-value=7.3e-07 Score=69.16 Aligned_cols=93 Identities=13% Similarity=0.064 Sum_probs=61.3
Q ss_pred CCChhhh-hhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 027382 71 TAGQERY-RAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQR 149 (224)
Q Consensus 71 ~~G~~~~-~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~ 149 (224)
.||+... .......+.++|+++.|+|+.++.+..... +. + . +.|.++|+||+|+.+.. ..+...++.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~~~~--~~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIADEK--TTKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGSCHH--HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCCCHH--HHHHHHHHHHH
Confidence 4676532 345677789999999999999876654211 01 1 1 68999999999996421 11223445555
Q ss_pred cCCeEEEEcCCCCCCHHHHHHHHHH
Q 027382 150 ENLFFMETSALEATNVETAFLTVLT 174 (224)
Q Consensus 150 ~~~~~~~~s~~~~~~v~~~~~~i~~ 174 (224)
.+.++ .+|++++.|+++++..+..
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 67788 9999999999988877654
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.12 E-value=6.2e-06 Score=71.39 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFS 41 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~ 41 (224)
.|+|+|+.|||||||++.+.+-..+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 3999999999999999999987533
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.02 E-value=1.2e-06 Score=69.40 Aligned_cols=90 Identities=13% Similarity=0.059 Sum_probs=60.4
Q ss_pred hhhhHhHhcCCCEEEEEEeCCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCC--CHHHHHHHHHHcCCeE
Q 027382 78 RAVTSAYYRGAVGAMLVYDMTKRQS-FDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAV--PTEDAQEFAQRENLFF 154 (224)
Q Consensus 78 ~~~~~~~~~~~d~vi~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~ 154 (224)
..+.+..+.++|.+++|+|+.+|.. ...+.+++..... .++|.++|+||+|+.+.... ..+...++....+.++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 3445557899999999999997653 4445555544433 26889999999999752210 0233444555567889
Q ss_pred EEEcCCCCCCHHHHHH
Q 027382 155 METSALEATNVETAFL 170 (224)
Q Consensus 155 ~~~s~~~~~~v~~~~~ 170 (224)
+.+|+.++.|+++++.
T Consensus 154 ~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIP 169 (307)
T ss_dssp EECCHHHHTTCTTTGG
T ss_pred EEEecCCCCCHHHHHh
Confidence 9999988877665543
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.90 E-value=2e-05 Score=62.95 Aligned_cols=143 Identities=13% Similarity=0.121 Sum_probs=76.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccC---------------------CcceeeEEEEEEEC-----------
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKA---------------------TIGVEFQTKTLSID----------- 60 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~~----------- 60 (224)
+..--++++|+.||||||+++.|.+...+..... ..+..+........
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 3456789999999999999999876321110000 00110100000000
Q ss_pred --CeEEEEEEEeCCChhhhhhh----hHh--HhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 027382 61 --HKTVKAQIWDTAGQERYRAV----TSA--YYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDL 132 (224)
Q Consensus 61 --~~~~~~~l~D~~G~~~~~~~----~~~--~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 132 (224)
...+.+.++|++|....... ... ..-..|-.+++.|+.... .+......+.+.. -..++++||.|.
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~ 280 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDA 280 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGG
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCC
Confidence 01234667999995322111 111 112478899999976542 3333333344322 123677899996
Q ss_pred CCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCCHHH
Q 027382 133 GSLRAVPTEDAQEFAQRENLFFMETSALEATNVET 167 (224)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 167 (224)
.. ....+.......+.|+..++ +|+++++
T Consensus 281 ~a----~~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 281 DA----RGGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp CS----CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred cc----chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 32 23446677777888877776 5655543
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.83 E-value=1.4e-06 Score=73.20 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=58.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEEeCCChhh--hhhhh--------H
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIWDTAGQER--YRAVT--------S 82 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--~~~~~--------~ 82 (224)
...+.|+++|.+||||||+.++|...... ...++.+...........+......+||..|.+. ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999754321 1111111000000000011113346789888733 23332 5
Q ss_pred hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhc
Q 027382 83 AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGH 116 (224)
Q Consensus 83 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~ 116 (224)
.++...++.++|+|.++. +......|+..+.+.
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 566667888999999985 455555666666543
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.73 E-value=0.00036 Score=57.95 Aligned_cols=27 Identities=30% Similarity=0.225 Sum_probs=23.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
..+..-|.|+|.+++|||+|+|+|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 346788999999999999999999863
No 235
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.71 E-value=7.2e-05 Score=60.35 Aligned_cols=82 Identities=12% Similarity=0.068 Sum_probs=54.9
Q ss_pred HhcCCCEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHH---HHHHcCCeEEEEcC
Q 027382 84 YYRGAVGAMLVYDMTKRQ-SFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQE---FAQRENLFFMETSA 159 (224)
Q Consensus 84 ~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~---~~~~~~~~~~~~s~ 159 (224)
...++|.+++|... +|. +...+.+++...... ++|.++|+||+|+.+... .+..++ .....+.+++.+|+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa 200 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSS 200 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEec
Confidence 46899999988665 454 344455555444332 578899999999964211 111333 33456788999999
Q ss_pred CCCCCHHHHHHH
Q 027382 160 LEATNVETAFLT 171 (224)
Q Consensus 160 ~~~~~v~~~~~~ 171 (224)
.++.|++++...
T Consensus 201 ~~~~gl~~L~~~ 212 (358)
T 2rcn_A 201 HTQDGLKPLEEA 212 (358)
T ss_dssp TTTBTHHHHHHH
T ss_pred CCCcCHHHHHHh
Confidence 999999887654
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.57 E-value=0.00011 Score=60.83 Aligned_cols=80 Identities=18% Similarity=0.094 Sum_probs=44.7
Q ss_pred EEEEEEEeCCChhhhh-hhhH-----hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCCC
Q 027382 63 TVKAQIWDTAGQERYR-AVTS-----AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIV-IMLIGNKCDLGSL 135 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~-~~~~-----~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~ 135 (224)
.+.+.++||||..... .... .....++.+++|+|+...... ......+.. .++ .-+|+||.|...
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~- 254 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDA- 254 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSS-
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCc-
Confidence 4679999999954321 1111 224478999999998753222 222223332 233 346889999743
Q ss_pred CCCCHHHHHHHHHHcCCe
Q 027382 136 RAVPTEDAQEFAQRENLF 153 (224)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~ 153 (224)
+. ..+..+....+.|
T Consensus 255 ~~---g~~l~i~~~~~~P 269 (433)
T 2xxa_A 255 RG---GAALSIRHITGKP 269 (433)
T ss_dssp CC---THHHHHHHHHCCC
T ss_pred cH---HHHHHHHHHHCCC
Confidence 11 2344555555655
No 237
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.46 E-value=0.0009 Score=49.76 Aligned_cols=86 Identities=12% Similarity=0.059 Sum_probs=58.0
Q ss_pred EEEEEEEeCCCh-hhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHH
Q 027382 63 TVKAQIWDTAGQ-ERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTE 141 (224)
Q Consensus 63 ~~~~~l~D~~G~-~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~ 141 (224)
.+.+.++|+|+. .. ......+..+|.+|+++..+ ..+...+...++.+.+.. +.++.+|.|+.|.... ....
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~ 139 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGD 139 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHH
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHH
Confidence 467899999986 32 23455677899999998775 467777777777776633 4568899999986420 1234
Q ss_pred HHHHHHHHcCCeEE
Q 027382 142 DAQEFAQRENLFFM 155 (224)
Q Consensus 142 ~~~~~~~~~~~~~~ 155 (224)
++.++.++.+.+++
T Consensus 140 ~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 140 EARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCchh
Confidence 56666666665543
No 238
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.39 E-value=9.1e-05 Score=53.84 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
+++++|++|+|||||++.+.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988643
No 239
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.30 E-value=0.00019 Score=57.87 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
.++++|++|||||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 579999999999999999998654
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.27 E-value=0.00014 Score=52.74 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4799999999999999999874
No 241
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.27 E-value=5.6e-05 Score=59.76 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
.++++|++|||||||+|.|.+...
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC---
T ss_pred EEEEECCCCCCHHHHHHHhccccc
Confidence 689999999999999999987543
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.21 E-value=0.00018 Score=53.18 Aligned_cols=21 Identities=48% Similarity=0.645 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
.++|+|++|||||||++.|.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999999986
No 243
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.12 E-value=5.4e-05 Score=55.41 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027382 18 VVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (224)
|+|+|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.11 E-value=0.00025 Score=51.73 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (224)
++|+|+.|||||||++.|.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6899999999999999998643
No 245
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.11 E-value=0.00094 Score=52.67 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
.++++|++|||||||+|.|. ...
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh
Confidence 47899999999999999999 543
No 246
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.11 E-value=0.00025 Score=52.26 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
-++++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4799999999999999999875
No 247
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.09 E-value=0.00028 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
-.|+++|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999875
No 248
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.08 E-value=0.00028 Score=52.39 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
-++|+|+.|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999999998754
No 249
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.07 E-value=0.00034 Score=50.32 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
.-.|+++|++||||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999999865
No 250
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.06 E-value=0.0003 Score=52.85 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
-++|+|+.|||||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999998754
No 251
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.06 E-value=0.00028 Score=50.77 Aligned_cols=20 Identities=45% Similarity=0.571 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 027382 17 KVVLIGDSAVGKSQLLARFA 36 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~ 36 (224)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 37899999999999999755
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.04 E-value=0.00032 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++|+|++|||||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999998744
No 253
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.04 E-value=0.00088 Score=55.30 Aligned_cols=86 Identities=15% Similarity=0.030 Sum_probs=48.3
Q ss_pred EEEEEEEeCCChhhhhh-hhH-----hHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCC
Q 027382 63 TVKAQIWDTAGQERYRA-VTS-----AYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLR 136 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~-~~~-----~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 136 (224)
.+.+.++||||...... ... ...-.+|.+++|+|+... ..+......+.... ....+|.||.|...
T Consensus 180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~l---~i~GVIlTKlD~~~-- 251 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEKV---GVTGLVLTKLDGDA-- 251 (425)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHT---CCCEEEEESGGGCS--
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhcC---CceEEEEeCcCCcc--
Confidence 45789999999532211 111 112368899999998643 22222223333221 12466889999642
Q ss_pred CCCHHHHHHHHHHcCCeEEEEc
Q 027382 137 AVPTEDAQEFAQRENLFFMETS 158 (224)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~s 158 (224)
....+.......+.|+..+.
T Consensus 252 --~~g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 252 --RGGAALSARHVTGKPIYFAG 271 (425)
T ss_dssp --SCHHHHHHHHHHCCCEEEEE
T ss_pred --cHHHHHHHHHHHCCCEEEEe
Confidence 23345566677788866554
No 254
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.03 E-value=0.00037 Score=53.14 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHh
Q 027382 15 VFKVVLIGDSAVGKSQLLARFA 36 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~ 36 (224)
.-.|+|+|++|||||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 255
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.01 E-value=0.00037 Score=51.41 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
--|+|+|++|||||||++.|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 34789999999999999999864
No 256
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.98 E-value=0.0004 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
.-.|+|+|++|||||||++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999999875
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.95 E-value=0.00042 Score=51.48 Aligned_cols=27 Identities=30% Similarity=0.185 Sum_probs=23.0
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.+....|+|+|++|||||||++.|.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999998764
No 258
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.95 E-value=0.00044 Score=52.54 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (224)
++++|+.|||||||++.+.+-.
T Consensus 34 ~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998754
No 259
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.94 E-value=0.00047 Score=49.03 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999998865
No 260
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.94 E-value=0.00046 Score=51.30 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
-|+|+|++|||||||++.|....
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999998754
No 261
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.88 E-value=0.00051 Score=51.78 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (224)
++++|+.|||||||++.+.+-.
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.87 E-value=0.00057 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.|+|+|++|||||||.+.|...
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 263
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.87 E-value=0.00059 Score=50.59 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=21.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
....|+|+|+.|||||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999998763
No 264
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.86 E-value=0.00062 Score=51.85 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 265
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.85 E-value=0.0022 Score=44.49 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
...|++.|++|+|||++.+.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 345899999999999999988654
No 266
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.85 E-value=0.00058 Score=50.31 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
..|+|+|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999998754
No 267
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.84 E-value=0.00064 Score=50.24 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.-|+|+|++|||||||++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35799999999999999999764
No 268
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.83 E-value=0.00063 Score=49.54 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
-++++|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 269
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.82 E-value=0.00066 Score=50.76 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (224)
++++|+.|+|||||++.+.+-.
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 270
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.81 E-value=0.00066 Score=52.42 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (224)
++|+|+.|||||||++.+.+-.
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 271
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.80 E-value=0.00074 Score=48.15 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCCHHHHHHHH
Q 027382 16 FKVVLIGDSAVGKSQLLARF 35 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l 35 (224)
..|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 272
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.80 E-value=0.00067 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++|+|+.|||||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 273
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.80 E-value=0.00068 Score=52.73 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (224)
++|+|+.|||||||++.+.+-.
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999998754
No 274
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.79 E-value=0.00067 Score=49.73 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.++++|+.|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999998874
No 275
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.78 E-value=0.00093 Score=48.00 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.78 E-value=0.00086 Score=47.78 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.|+|.|.+||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998653
No 277
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.78 E-value=0.00071 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (224)
++++|+.|||||||++.+.+-.
T Consensus 36 ~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998754
No 278
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.76 E-value=0.00077 Score=50.94 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 279
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.76 E-value=0.00054 Score=51.70 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=14.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh-cC
Q 027382 17 KVVLIGDSAVGKSQLLARFA-RN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~-~~ 38 (224)
-++|+|+.|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999998 64
No 280
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.75 E-value=0.00076 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++|+|+.|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 281
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.75 E-value=0.00086 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++++|+.|||||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 282
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.74 E-value=0.0011 Score=51.38 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
++++|+.|||||||++.+.+-..
T Consensus 40 ~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 78999999999999999987543
No 283
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.74 E-value=0.0008 Score=51.93 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.++|+|+.|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999999863
No 284
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.74 E-value=0.00081 Score=51.94 Aligned_cols=22 Identities=45% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (224)
++|+|+.|||||||++.+.+-.
T Consensus 53 ~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCCcHHHHHHHHHcCC
Confidence 7899999999999999998754
No 285
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.73 E-value=0.00081 Score=51.21 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (224)
++++|+.|+|||||++.+.+-.
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998754
No 286
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.73 E-value=0.00085 Score=49.91 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
No 287
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.73 E-value=0.00087 Score=51.35 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027382 18 VVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (224)
++++|+.|+|||||++.+.+-
T Consensus 32 ~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999975
No 288
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.72 E-value=0.00084 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (224)
++|+|+.|||||||++.+.+-.
T Consensus 44 ~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 289
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.72 E-value=0.00089 Score=48.37 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.-++++|++|+|||||+++|+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999999864
No 290
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.72 E-value=0.00093 Score=49.72 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
++|+|+|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999854
No 291
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.72 E-value=0.00079 Score=48.64 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
-.++++|++|+|||||++.+.+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999987643
No 292
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.71 E-value=0.00087 Score=51.35 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999998754
No 293
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.71 E-value=0.00098 Score=52.52 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEFS 41 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~~ 41 (224)
.++++|++|||||||+|.|.+...+
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred eEEEECCCCCcHHHHHHHhcccccc
Confidence 4789999999999999999876543
No 294
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.69 E-value=0.00088 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++|+|+.|||||||++.+.+-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48999999999999999998753
No 295
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.69 E-value=0.00096 Score=51.64 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027382 18 VVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (224)
++|+|+.|||||||++.+.+-
T Consensus 49 ~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
No 296
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.69 E-value=0.0013 Score=48.55 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=23.6
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.......|+|+|.+|||||||.+.|...
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3445567999999999999999999874
No 297
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.67 E-value=0.00093 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++|+|+.|||||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
No 298
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.67 E-value=0.00099 Score=52.53 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5899999999999999999864
No 299
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.66 E-value=0.00098 Score=51.94 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (224)
++|+|+.|||||||++.+.+-.
T Consensus 50 ~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 7899999999999999998754
No 300
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.65 E-value=0.00099 Score=49.06 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
.+|+|+|.+||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999986
No 301
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.65 E-value=0.00067 Score=50.51 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.++++|+.|+|||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999876
No 302
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.65 E-value=0.001 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (224)
++++|+.|||||||++.+.+-.
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998754
No 303
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.64 E-value=0.0012 Score=48.57 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=22.2
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
....+.|+|.|.+||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999999865
No 304
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.64 E-value=0.0013 Score=48.45 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 305
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.64 E-value=0.031 Score=46.36 Aligned_cols=63 Identities=30% Similarity=0.369 Sum_probs=39.6
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhc------------------CCCCCC---ccCCcceeeEEEEEEE---CCeEEEEE
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFAR------------------NEFSVD---SKATIGVEFQTKTLSI---DHKTVKAQ 67 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~------------------~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~ 67 (224)
..++.-|.|+|..++|||+|+|.|+. ..+... ..-|.|+-.-...+.+ ++....+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 45788889999999999999996641 122211 1123343332211111 56778999
Q ss_pred EEeCCCh
Q 027382 68 IWDTAGQ 74 (224)
Q Consensus 68 l~D~~G~ 74 (224)
++||.|.
T Consensus 144 llDTEG~ 150 (457)
T 4ido_A 144 LMDTQGT 150 (457)
T ss_dssp EEEECCB
T ss_pred EEeccCC
Confidence 9999993
No 306
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.63 E-value=0.001 Score=51.40 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999998754
No 307
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.63 E-value=0.0051 Score=45.28 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027382 18 VVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (224)
+++.|++|+|||+|++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998753
No 308
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.62 E-value=0.0011 Score=48.84 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
..|+|+|.+||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998653
No 309
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.62 E-value=0.0013 Score=48.35 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 310
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.61 E-value=0.0012 Score=48.32 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999875
No 311
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.61 E-value=0.0013 Score=48.19 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=22.8
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
......|+|.|.+||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 344578999999999999999999865
No 312
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.60 E-value=0.0012 Score=49.41 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 313
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.60 E-value=0.0013 Score=48.88 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
++|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 314
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.60 E-value=0.0012 Score=48.67 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=21.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
..-.|+|+|++|||||||.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999998764
No 315
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.59 E-value=0.0012 Score=47.35 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.|++.|.+||||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999763
No 316
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.59 E-value=0.0014 Score=47.49 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 317
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.59 E-value=0.0017 Score=46.95 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
...|+++|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 318
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.58 E-value=0.0015 Score=51.83 Aligned_cols=27 Identities=26% Similarity=0.208 Sum_probs=23.2
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.+...-|+|+|++|||||||++.|.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 455677899999999999999998874
No 319
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.57 E-value=0.0011 Score=49.58 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
-++|+|++|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998743
No 320
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.57 E-value=0.0013 Score=49.90 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
-++++|++|||||||++.+.+
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 378999999999999998873
No 321
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.56 E-value=0.0015 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 322
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.56 E-value=0.0014 Score=50.59 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 323
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.55 E-value=0.0015 Score=48.27 Aligned_cols=24 Identities=21% Similarity=0.051 Sum_probs=21.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
....|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 324
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.55 E-value=0.0014 Score=49.39 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.1
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.+...-|+|.|..|||||||++.|.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345567999999999999999999875
No 325
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.55 E-value=0.0016 Score=49.55 Aligned_cols=25 Identities=12% Similarity=0.200 Sum_probs=22.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
...++|+|.|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999864
No 326
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.52 E-value=0.0014 Score=48.70 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 327
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.51 E-value=0.0016 Score=47.18 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 328
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.50 E-value=0.00066 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.++|+|++|||||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 329
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.49 E-value=0.0018 Score=51.47 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=22.4
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
...++-|+|+|++|||||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44567899999999999999998865
No 330
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.48 E-value=0.002 Score=46.84 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 331
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.48 E-value=0.0014 Score=52.77 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
++++|+.|||||||++.+.+-..
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCchHHHHHHHHhcCCC
Confidence 78999999999999999998553
No 332
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.47 E-value=0.0019 Score=46.72 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 333
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.46 E-value=0.0017 Score=48.44 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998865
No 334
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.45 E-value=0.0018 Score=49.34 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
+....|+|+|+.|||||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445699999999999999999876
No 335
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.43 E-value=0.0015 Score=51.15 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++++|+.|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37999999999999999998754
No 336
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.43 E-value=0.0016 Score=52.62 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.++|+|+.|||||||++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999763
No 337
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.43 E-value=0.0017 Score=52.28 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
++++|+.|||||||++.+.+-..
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 78999999999999999987543
No 338
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.42 E-value=0.0017 Score=50.48 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027382 18 VVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (224)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 339
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.41 E-value=0.002 Score=45.79 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 340
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.41 E-value=0.0011 Score=52.30 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++|+|+.|||||||++.+.+-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 48999999999999999998743
No 341
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.41 E-value=0.0019 Score=46.32 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
..++++|.+|||||||+.+|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999863
No 342
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.40 E-value=0.0024 Score=47.11 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 343
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.40 E-value=0.0019 Score=52.21 Aligned_cols=23 Identities=35% Similarity=0.313 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
++|+|+.|||||||++.+.+-..
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCchHHHHHHHHhcCCC
Confidence 78999999999999999987543
No 344
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.40 E-value=0.0019 Score=46.87 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
...|+++|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998764
No 345
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.40 E-value=0.0018 Score=52.21 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
++++|+.|||||||++.+.+-..
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCchHHHHHHHHHCCCC
Confidence 78999999999999999998543
No 346
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.40 E-value=0.0019 Score=52.52 Aligned_cols=23 Identities=48% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
++++|+.|||||||++.+.+-..
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCchHHHHHHHHHcCCC
Confidence 78999999999999999998553
No 347
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.0032 Score=47.26 Aligned_cols=92 Identities=11% Similarity=0.072 Sum_probs=48.5
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCccCCcceeeEEEEEEECCeEEEEEEE-eC-CChhhhh----h-hhHhH
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARNEFSVDSKATIGVEFQTKTLSIDHKTVKAQIW-DT-AGQERYR----A-VTSAY 84 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~-~G~~~~~----~-~~~~~ 84 (224)
+++.+-|++.|.++.|||+|++++++...... .........-.+....+.|| |. +....+. + .....
T Consensus 26 P~nkilvl~~~~~~~~~~~~~~~lf~~~~~~~------~i~k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EV 99 (233)
T 3uc9_A 26 PQNKILVLSDHPHNFLKTQFLQDLFHCSSTGI------SIVKDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPL 99 (233)
T ss_dssp CCCEEEEEEEGGGHHHHHHHHHHHHCCCCCSS------CEEEEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHH
T ss_pred CCCceEEEecCcccccHHHHHHHHhccccccc------ccccCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHH
Confidence 34566667779999999999999998632111 11111222223444455443 53 3322221 1 11222
Q ss_pred hcCCCEEEEEEeCCChhhHHHHHHH
Q 027382 85 YRGAVGAMLVYDMTKRQSFDHMARW 109 (224)
Q Consensus 85 ~~~~d~vi~v~d~~~~~s~~~~~~~ 109 (224)
..-..|+|+|++...+...+.+.+.
T Consensus 100 R~viggII~~f~~p~~~~~~~i~~~ 124 (233)
T 3uc9_A 100 RNVMAGIILITDIRQTKPQELLHQF 124 (233)
T ss_dssp HHTEEEEEEEECHHHHCGGGTHHHH
T ss_pred HHhcceEEEEEeCCCcchHHHHHHH
Confidence 2345789999986655444444433
No 348
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.39 E-value=0.0011 Score=46.52 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++++|++|+|||+|++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998743
No 349
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.39 E-value=0.0022 Score=50.25 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=22.2
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
......|+|+|++|||||||.+.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44667899999999999999988764
No 350
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.39 E-value=0.0019 Score=52.17 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
++++|+.|||||||++.+.+-..
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCchHHHHHHHHhcCCC
Confidence 78999999999999999988543
No 351
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.38 E-value=0.0019 Score=52.22 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.-+++|+|++|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998753
No 352
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.38 E-value=0.0019 Score=48.48 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
...|+|.|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 353
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.38 E-value=0.00088 Score=49.01 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
...|+|.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
No 354
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.36 E-value=0.0024 Score=46.89 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=20.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
....|+|.|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999864
No 355
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.35 E-value=0.0019 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
.-.|+++|+.|||||||++.|.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34689999999999999999875
No 356
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.34 E-value=0.002 Score=52.24 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
++++|+.|||||||++.+.+-..
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCcHHHHHHHHHHcCCC
Confidence 78999999999999999997653
No 357
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.34 E-value=0.0023 Score=50.56 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
....-|+|+|+.|||||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999999863
No 358
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.34 E-value=0.0028 Score=45.90 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
....|+++|.+||||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999999998653
No 359
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.34 E-value=0.0021 Score=52.14 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
++++|+.|||||||++.+.+-..
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCChHHHHHHHHHcCCC
Confidence 78999999999999999987543
No 360
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.34 E-value=0.0021 Score=46.10 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
+|+|+|.+||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 361
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.33 E-value=0.0023 Score=47.97 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 362
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.33 E-value=0.0023 Score=47.10 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=21.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
+....|+|+|.+|||||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999875
No 363
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.32 E-value=0.0021 Score=50.21 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
....-|++.|++||||||+.++|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999975
No 364
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.32 E-value=0.0021 Score=49.03 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027382 18 VVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (224)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999864
No 365
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.31 E-value=0.0019 Score=51.53 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++|+|+.|||||||++.+.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 366
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.28 E-value=0.0021 Score=52.00 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++|+|+.|||||||++.|.+..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 367
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.28 E-value=0.0025 Score=46.77 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
...|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 356999999999999999999864
No 368
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.27 E-value=0.0024 Score=45.96 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
...|++.|.+||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34689999999999999999874
No 369
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.27 E-value=0.0027 Score=48.55 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=21.6
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
+....+.|+|.|.+||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999998865
No 370
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.26 E-value=0.0024 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.++|+|++|||||||++.+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999863
No 371
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.26 E-value=0.0023 Score=50.40 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
..--++++|+.||||||+++.|.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 344689999999999999999876
No 372
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.23 E-value=0.015 Score=46.51 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 027382 18 VVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~ 37 (224)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999876
No 373
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.23 E-value=0.002 Score=48.11 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 374
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.22 E-value=0.0027 Score=47.34 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
.+.|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 375
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.21 E-value=0.0028 Score=46.00 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 376
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.21 E-value=0.003 Score=46.01 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
-|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 377
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.21 E-value=0.003 Score=45.37 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999988764
No 378
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.19 E-value=0.0036 Score=45.30 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 379
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.19 E-value=0.0017 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
++++|+.|||||||++.+.+-..
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEECCCCccHHHHHHHHHcCCC
Confidence 78999999999999999987543
No 380
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.18 E-value=0.0026 Score=52.48 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++|+|+.|||||||++.+++..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999998743
No 381
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.16 E-value=0.0027 Score=51.84 Aligned_cols=21 Identities=48% Similarity=0.670 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027382 18 VVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (224)
++++|+.|||||||++.+.+-
T Consensus 50 ~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEESTTSSHHHHHHHHHTC
T ss_pred EEEECCCCChHHHHHHHHhCC
Confidence 799999999999999999874
No 382
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.16 E-value=0.0029 Score=46.74 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 383
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.15 E-value=0.0033 Score=45.70 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 384
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.14 E-value=0.0036 Score=47.92 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHh
Q 027382 16 FKVVLIGDSAVGKSQLLARFA 36 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~ 36 (224)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 385
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.12 E-value=0.0031 Score=48.31 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
.|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 386
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.12 E-value=0.0057 Score=44.82 Aligned_cols=86 Identities=10% Similarity=-0.069 Sum_probs=57.9
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCCCCCCCH
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHA--DKNIVIMLIGNKCDLGSLRAVPT 140 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~~~~~~~ 140 (224)
.+.+.++|+|+.. .......+..+|.+++++..+.. + ..+...+..+.+.. ..+.++.+|+|+.|... . ..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~-~~ 147 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--T-ML 147 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--E-EE
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--h-HH
Confidence 3678999999865 33455667779999999988664 4 66677777776543 24567899999999532 1 23
Q ss_pred HHHHHHHHHcCCeEE
Q 027382 141 EDAQEFAQRENLFFM 155 (224)
Q Consensus 141 ~~~~~~~~~~~~~~~ 155 (224)
.++.++.++.+.+++
T Consensus 148 ~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 148 NVLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHcCCcee
Confidence 455666666665443
No 387
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.11 E-value=0.0034 Score=44.71 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 388
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.11 E-value=0.0031 Score=47.08 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
-++++|++|+|||||+..+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999854
No 389
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.11 E-value=0.0029 Score=53.59 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++|+|++|||||||++.+++.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998754
No 390
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.11 E-value=0.0031 Score=48.87 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (224)
++++|++|+|||||++.+.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8999999999999999998643
No 391
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.11 E-value=0.0012 Score=48.88 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 392
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.11 E-value=0.0036 Score=46.85 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
-|+|+|+|||||+|....|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999998865
No 393
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.10 E-value=0.0039 Score=46.38 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999975
No 394
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.10 E-value=0.0036 Score=47.22 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
...+|+|+|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 395
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.09 E-value=0.0031 Score=50.35 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999864
No 396
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.08 E-value=0.0024 Score=48.87 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=22.7
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
......|+++|.+||||||+.+.|...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 445678999999999999999998653
No 397
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.05 E-value=0.0043 Score=47.69 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 398
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.04 E-value=0.0043 Score=44.06 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
.-.|+|.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998865
No 399
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.02 E-value=0.0023 Score=46.08 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=16.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999864
No 400
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.02 E-value=0.0017 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
++++|+.|||||||++.+.+-..
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 78999999999999999997543
No 401
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.01 E-value=0.0046 Score=44.44 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
...|+++|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999876
No 402
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.99 E-value=0.0043 Score=44.76 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 403
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.98 E-value=0.0039 Score=44.90 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
-.+|+|+.|+|||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999865
No 404
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.97 E-value=0.0039 Score=50.33 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
..--++++|+.||||||++..|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 344689999999999999999876
No 405
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.96 E-value=0.0036 Score=48.92 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
-++|+|++|+|||||+..+.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988643
No 406
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.95 E-value=0.0044 Score=46.88 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
..+.|+|.|++||||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
No 407
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.91 E-value=0.0041 Score=52.16 Aligned_cols=23 Identities=30% Similarity=0.694 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
.--++|+|..|||||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34689999999999999999876
No 408
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.91 E-value=0.0053 Score=47.79 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
...+.|+|.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999873
No 409
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.0035 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++|+|+.|||||||++.|.+..
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 58999999999999999998743
No 410
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.90 E-value=0.0045 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
-.|++.|++|+|||+|++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999999763
No 411
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.89 E-value=0.0051 Score=45.08 Aligned_cols=23 Identities=39% Similarity=0.440 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
-.+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998764
No 412
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.88 E-value=0.0046 Score=49.71 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
+++++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 413
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.87 E-value=0.0037 Score=44.78 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999988754
No 414
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.86 E-value=0.0048 Score=45.71 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999987
No 415
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.83 E-value=0.0055 Score=45.89 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.-.+++.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998753
No 416
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.82 E-value=0.0033 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
-++|+|..|||||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999753
No 417
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.82 E-value=0.0052 Score=46.28 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 418
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.81 E-value=0.0046 Score=47.29 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
-.|+++|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998865
No 419
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.81 E-value=0.0052 Score=45.52 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
...|+++|.+||||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998865
No 420
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.79 E-value=0.0074 Score=45.48 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=21.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
....|++.|.+||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998764
No 421
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.79 E-value=0.021 Score=45.31 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.-.|++.|++|+|||+|++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346899999999999999999654
No 422
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.77 E-value=0.0069 Score=44.36 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=22.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
..-+.|++.|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999998754
No 423
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.69 E-value=0.0067 Score=45.79 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=22.1
Q ss_pred ccceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 11 KIDYVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 11 ~~~~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
.+.....|+|+|.+||||||+.+.|..
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 455667899999999999999998875
No 424
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.67 E-value=0.0087 Score=51.00 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
.++++|+.|+|||||++.+.+...
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 479999999999999999998543
No 425
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.65 E-value=0.0069 Score=42.39 Aligned_cols=19 Identities=37% Similarity=0.586 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 027382 18 VVLIGDSAVGKSQLLARFA 36 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~ 36 (224)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3789999999999999975
No 426
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.65 E-value=0.0061 Score=51.10 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
-++|+|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999876
No 427
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.63 E-value=0.0063 Score=49.44 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999985
No 428
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.62 E-value=0.0081 Score=46.96 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 429
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.60 E-value=0.0066 Score=50.36 Aligned_cols=23 Identities=43% Similarity=0.540 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
+++++|+.|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999998754
No 430
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.55 E-value=0.0088 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
++++|+.|+|||||++.|.+...
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 68999999999999999998543
No 431
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.0095 Score=51.50 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
.++++|+.|+|||||++.|.+...
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 479999999999999999998543
No 432
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.53 E-value=0.0087 Score=45.09 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=20.3
Q ss_pred cceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 12 IDYVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 12 ~~~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
...-++++|+|.+||||||+...|..
T Consensus 5 ~~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 5 HHHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ----CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccceeeECCCCCCHHHHHHHHHH
Confidence 34568999999999999999998865
No 433
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.52 E-value=0.0074 Score=47.22 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=21.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
..+.-+++.|+||+|||+|.+.+...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567888899999999999998754
No 434
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.52 E-value=0.0085 Score=41.56 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=21.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
....|++.|++|+|||++.+.+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34568999999999999999997643
No 435
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.51 E-value=0.0072 Score=52.01 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 48999999999999999998754
No 436
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.50 E-value=0.0078 Score=44.84 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999998865
No 437
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.49 E-value=0.0075 Score=46.68 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
..-.+++.|++|+|||+|++.+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3445999999999999999999764
No 438
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.49 E-value=0.073 Score=39.93 Aligned_cols=90 Identities=14% Similarity=0.020 Sum_probs=61.3
Q ss_pred EEEEEEEeCCChhhhhhhhHhHhcCCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHH
Q 027382 63 TVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVPTED 142 (224)
Q Consensus 63 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~ 142 (224)
.+.+.++|+|+.. .......+..+|.+++++..+ ..+...+...++.+.+.......+.+|.|+.+... ....+
T Consensus 118 ~yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~- 191 (245)
T 3ea0_A 118 FYDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSD- 191 (245)
T ss_dssp HCSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHH-
T ss_pred hCCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHH-
Confidence 4678999998854 234555677899999998775 57788888888888765443456889999998643 23333
Q ss_pred HHHHHHHcCCeEEEEcCC
Q 027382 143 AQEFAQRENLFFMETSAL 160 (224)
Q Consensus 143 ~~~~~~~~~~~~~~~s~~ 160 (224)
++.+..+.+++.+-..
T Consensus 192 --~~~~~~~~~v~~~ip~ 207 (245)
T 3ea0_A 192 --EIEKVIGRPISKRIPQ 207 (245)
T ss_dssp --HHHHHHTSCEEEEECC
T ss_pred --HHHHHhCCCeEEECCC
Confidence 3344456666655333
No 439
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.47 E-value=0.0076 Score=46.98 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.-.+++.|++|+|||+|++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457899999999999999999763
No 440
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.45 E-value=0.0085 Score=45.66 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
.-.|++.|++|+|||+|++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999976
No 441
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.43 E-value=0.011 Score=50.90 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 442
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.42 E-value=0.0079 Score=46.61 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
-++|+|++|+|||||+..+.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999886
No 443
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.40 E-value=0.0065 Score=44.92 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999888865
No 444
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.36 E-value=0.0088 Score=46.94 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.-.|++.|++|+|||+|++.+...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 345899999999999999999864
No 445
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.33 E-value=0.012 Score=50.76 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
.++++|+.|+|||||++.+.+...
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 479999999999999999988543
No 446
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.33 E-value=0.009 Score=47.26 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
-.+++.|++|+|||+|++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998763
No 447
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.29 E-value=0.15 Score=40.14 Aligned_cols=21 Identities=10% Similarity=0.275 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027382 18 VVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (224)
+++-|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455666999999999999754
No 448
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.28 E-value=0.012 Score=50.07 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
++|+|+.|+|||||++.+.+-..
T Consensus 297 ~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 297 IGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999998544
No 449
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.28 E-value=0.0093 Score=46.78 Aligned_cols=134 Identities=15% Similarity=0.140 Sum_probs=70.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCC-CC----------ccCC-----------cceeeEEEE----E--EE-CCeEEE
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARNEFS-VD----------SKAT-----------IGVEFQTKT----L--SI-DHKTVK 65 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~~~~-~~----------~~~~-----------~~~~~~~~~----~--~~-~~~~~~ 65 (224)
.-.|+++|+.|+||||++..|.+.-.. .. +.+. .+....... . -+ ......
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 346889999999999999988642110 00 0000 000000000 0 00 013357
Q ss_pred EEEEeCCChhhhhh-h---hHhHhc--CCCEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCC
Q 027382 66 AQIWDTAGQERYRA-V---TSAYYR--GAVGAMLVYDMTKRQSFDHMARWLDELRGHADKNIVIMLIGNKCDLGSLRAVP 139 (224)
Q Consensus 66 ~~l~D~~G~~~~~~-~---~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 139 (224)
+.++||+|...... . ....+. ..+.+++|+|.+. ....+..+...+.. .+ ..-++.||.|... .
T Consensus 185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~--~~~~~~~~~~~~~~---l~-~~giVltk~D~~~----~ 254 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATA--KYEDMKHIVKRFSS---VP-VNQYIFTKIDETT----S 254 (296)
T ss_dssp EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTB--CHHHHHHHTTTTSS---SC-CCEEEEECTTTCS----C
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCC--CHHHHHHHHHHHhc---CC-CCEEEEeCCCccc----c
Confidence 89999999653321 1 112222 3677889998763 23334443333321 11 2345679999752 2
Q ss_pred HHHHHHHHHHcCCeEEEEc
Q 027382 140 TEDAQEFAQRENLFFMETS 158 (224)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~s 158 (224)
...+...+...++|+..++
T Consensus 255 ~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp CHHHHHHHHTCSCCCSEEC
T ss_pred hhHHHHHHHHHCcCEEEEE
Confidence 3456677778887755543
No 450
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.24 E-value=0.014 Score=45.69 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.-.+++.|++|+|||++++.+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 347899999999999999988764
No 451
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.22 E-value=0.015 Score=49.53 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
.++|+|+.|+|||||++.+.+...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 452
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.20 E-value=0.012 Score=46.14 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=20.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
.....+++.|++|+|||+|.+.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999986654
No 453
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.20 E-value=0.014 Score=50.44 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
.++|+|+.|+|||||++.+.+...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999998654
No 454
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.19 E-value=0.011 Score=46.54 Aligned_cols=85 Identities=16% Similarity=0.109 Sum_probs=48.4
Q ss_pred EEEEEEeCCChhhhhh-h------hHhHh-----cCCCEEEEEEeCCCh-hhHHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 027382 64 VKAQIWDTAGQERYRA-V------TSAYY-----RGAVGAMLVYDMTKR-QSFDHMARWLDELRGHADKNIVIMLIGNKC 130 (224)
Q Consensus 64 ~~~~l~D~~G~~~~~~-~------~~~~~-----~~~d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 130 (224)
+.+.++|+||...... + ....+ ...+.+++|+|+... +.+..+ ..+.+.. ++ .-+|.||.
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a----~~~~~~~--~i-~gvVlTk~ 259 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA----KIFKEAV--NV-TGIILTKL 259 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH----HHHHHHS--CC-CEEEEECG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHH----HHHHhcC--CC-CEEEEeCC
Confidence 4588999999421111 0 11111 247889999998742 222322 2232221 22 35667999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCeEEEEcC
Q 027382 131 DLGSLRAVPTEDAQEFAQRENLFFMETSA 159 (224)
Q Consensus 131 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (224)
|... ....+.......+.|+..+..
T Consensus 260 D~~~----~gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 260 DGTA----KGGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GGCS----CTTHHHHHHHHHCCCEEEEEC
T ss_pred CCcc----chHHHHHHHHHHCCCEEEEeC
Confidence 9642 233577888888888766643
No 455
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.17 E-value=0.013 Score=42.88 Aligned_cols=21 Identities=43% Similarity=0.455 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 456
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.17 E-value=0.012 Score=43.30 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
..|+|+|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998654
No 457
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.16 E-value=0.0075 Score=52.06 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++++|+.|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 48999999999999999998754
No 458
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.14 E-value=0.016 Score=44.58 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
...-.+++.|++|+|||+|.+.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999999764
No 459
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.12 E-value=0.0084 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++++|+.|+|||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 58999999999999999998744
No 460
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.12 E-value=0.0073 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++++|+.|+|||||++.+.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 48999999999999999888643
No 461
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.11 E-value=0.012 Score=48.55 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
...-|+++|.+||||||+.++|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999999753
No 462
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.11 E-value=0.012 Score=44.20 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 027382 17 KVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (224)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999887764
No 463
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.08 E-value=0.011 Score=47.45 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.-.++|.|++|+|||||++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998763
No 464
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.07 E-value=0.013 Score=47.34 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 027382 18 VVLIGDSAVGKSQLLARFA 36 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~ 36 (224)
.+|+|+.|+|||||++++.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4589999999999999986
No 465
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.05 E-value=0.0093 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 48999999999999999998743
No 466
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.017 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC
Q 027382 18 VVLIGDSAVGKSQLLARFARNEFS 41 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~~~~ 41 (224)
++|+|+.|+|||||++.+.+-..+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 799999999999999999986543
No 467
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.99 E-value=0.012 Score=47.19 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
-+.|+|++|+|||||+..+.+..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 468
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.99 E-value=0.013 Score=47.20 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
.++|.|++|+|||||++.+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998643
No 469
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.98 E-value=0.01 Score=45.56 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
+...|+|.|.+||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998754
No 470
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.97 E-value=0.014 Score=45.54 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.-.+++.|++|+|||+|++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998753
No 471
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.96 E-value=0.017 Score=43.66 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
..|++.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999998754
No 472
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.015 Score=48.06 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.+-.|++.|+||+|||+|.+++.+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3446999999999999999999863
No 473
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.90 E-value=0.014 Score=46.26 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.-.|++.|++|+|||+|++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 356899999999999999999864
No 474
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.90 E-value=0.018 Score=46.21 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=20.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
...+|+++|++|+||||+.+.|..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999987754
No 475
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.88 E-value=0.015 Score=46.44 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027382 18 VVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (224)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999998764
No 476
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.85 E-value=0.017 Score=41.79 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027382 18 VVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (224)
++|+|.++||||+|..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 477
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.85 E-value=0.017 Score=45.54 Aligned_cols=24 Identities=42% Similarity=0.517 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.-.+++.|++|+|||+|+.++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988753
No 478
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.81 E-value=0.017 Score=45.74 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
..-.|++.|++|+|||+|++.+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999754
No 479
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.81 E-value=0.022 Score=44.92 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
..-|+|+|++|||||+|...|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 345789999999999999999753
No 480
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.79 E-value=0.018 Score=46.06 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998865
No 481
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.76 E-value=0.02 Score=45.39 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 482
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.018 Score=47.70 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.+-.|++.|+||+|||+|.+++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4557999999999999999999863
No 483
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.70 E-value=0.018 Score=47.57 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=22.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 13 DYVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 13 ~~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
+.+-.|++.|+||+|||+|.+++.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 34557999999999999999999864
No 484
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.66 E-value=0.0082 Score=46.06 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.+++.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3889999999999999999763
No 485
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.63 E-value=0.02 Score=42.20 Aligned_cols=19 Identities=37% Similarity=0.586 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 027382 18 VVLIGDSAVGKSQLLARFA 36 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~ 36 (224)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4788999999999999874
No 486
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.63 E-value=0.023 Score=40.76 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNE 39 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (224)
-|++.|++|+||||+.-.|....
T Consensus 18 gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHcC
Confidence 48999999999999999998754
No 487
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.62 E-value=0.016 Score=46.60 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
..-.++|.|++|+|||+|++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3447899999999999999998753
No 488
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.61 E-value=0.019 Score=45.72 Aligned_cols=21 Identities=14% Similarity=0.460 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027382 18 VVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (224)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998764
No 489
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.54 E-value=0.023 Score=44.88 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
-|+|+|++|||||+|...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999754
No 490
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.53 E-value=0.019 Score=47.59 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
-.+++.|++|+|||+|++.+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998763
No 491
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.53 E-value=0.024 Score=45.21 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
-|+|+|++|||||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 492
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.53 E-value=0.024 Score=42.21 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 027382 15 VFKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~ 37 (224)
..-|++.|.+||||||+++.|..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999864
No 493
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.021 Score=46.72 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 14 YVFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 14 ~~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.+-.|++.|+||+|||.|.+++.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh
Confidence 3456999999999999999999763
No 494
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.50 E-value=0.02 Score=42.47 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 027382 16 FKVVLIGDSAVGKSQLLARFAR 37 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~ 37 (224)
+.|++.|.+||||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998865
No 495
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.49 E-value=0.02 Score=48.27 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027382 18 VVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (224)
|+++|++|+|||+|++.+.+.
T Consensus 67 vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999864
No 496
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.49 E-value=0.024 Score=51.51 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 027382 17 KVVLIGDSAVGKSQLLARFARNEF 40 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~ 40 (224)
.++|+|+.|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 379999999999999999996543
No 497
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.46 E-value=0.02 Score=45.97 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 027382 16 FKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 16 i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
-.+++.|++|+|||+|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998754
No 498
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.43 E-value=0.022 Score=45.83 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 027382 15 VFKVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 15 ~i~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.-.|++.|++|+|||+|++.+...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 345899999999999999999864
No 499
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.40 E-value=0.023 Score=47.65 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.|+++|++|+|||+|++.+.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 500
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.39 E-value=0.021 Score=48.68 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 027382 17 KVVLIGDSAVGKSQLLARFARN 38 (224)
Q Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (224)
.++++|++|+|||||++.+.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999998754
Done!