BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027383
(224 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9GZU7|CTDS1_HUMAN Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1 OS=Homo sapiens GN=CTDSP1 PE=1 SV=1
Length = 261
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 19/117 (16%)
Query: 106 GQEIEKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKIN 165
Q+ +K+ VV+DLDETLV +S P A+ + + E DG ++
Sbjct: 85 AQDSDKICVVIDLDETLV---HSSFKP----VNNADFIIPV----------EIDGV--VH 125
Query: 166 YVTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTV 222
V V +RP + EFL+++ E + VLFTA L YA P+ D +D+ F RL+R S V
Sbjct: 126 QVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCV 182
>sp|P58466|CTDS1_MOUSE Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1 OS=Mus musculus GN=Ctdsp1 PE=1 SV=1
Length = 261
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 19/117 (16%)
Query: 106 GQEIEKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKIN 165
Q+ +K+ VV+DLDETLV +S P A+ + + E DG ++
Sbjct: 85 AQDSDKICVVIDLDETLV---HSSFKP----VNNADFIIPV----------EIDGV--VH 125
Query: 166 YVTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTV 222
V V +RP + EFL+++ E + VLFTA L YA P+ D +D+ F RL+R S V
Sbjct: 126 QVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCV 182
>sp|Q9PTJ6|CTDSL_CHICK CTD small phosphatase-like protein OS=Gallus gallus GN=NFI1 PE=2
SV=2
Length = 275
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 59/112 (52%), Gaps = 19/112 (16%)
Query: 111 KLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTVF 170
K VV+DLDETLV SS I A+ + + E DG I+ V V
Sbjct: 105 KKCVVIDLDETLV----HSSFKPI---SNADFIVPV----------EIDGT--IHQVYVL 145
Query: 171 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTV 222
+RP + EFL+++ E + VLFTA L YA P+ D +DR +F RL+R S V
Sbjct: 146 KRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCV 197
>sp|P58465|CTDSL_MOUSE CTD small phosphatase-like protein OS=Mus musculus GN=Ctdspl PE=2
SV=3
Length = 276
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 19/112 (16%)
Query: 111 KLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTVF 170
K VV+DLDETLV SS I A+ + + E DG I+ V V
Sbjct: 106 KKCVVIDLDETLV----HSSFKPI---SNADFIVPV----------EIDGT--IHQVYVL 146
Query: 171 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTV 222
+RP + EFL+++ + + VLFTA L YA P+ D +DR +F RL+R S V
Sbjct: 147 KRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCV 198
>sp|O15194|CTDSL_HUMAN CTD small phosphatase-like protein OS=Homo sapiens GN=CTDSPL PE=1
SV=2
Length = 276
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 19/112 (16%)
Query: 111 KLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTVF 170
K VV+DLDETLV SS I A+ + + E DG I+ V V
Sbjct: 106 KKCVVIDLDETLV----HSSFKPI---SNADFIVPV----------EIDGT--IHQVYVL 146
Query: 171 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTV 222
+RP + EFL+++ + + VLFTA L YA P+ D +DR +F RL+R S V
Sbjct: 147 KRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCV 198
>sp|Q09695|YA22_SCHPO Uncharacterized protein C2F7.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC2F7.02c PE=1 SV=1
Length = 325
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 19/108 (17%)
Query: 111 KLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTVF 170
K ++LDLDETLV + PA GL+ + V V
Sbjct: 157 KKCLILDLDETLVHSSFKYIEPADFVVSIEIDGLQ-------------------HDVRVV 197
Query: 171 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYR 218
+RPG+ EFLKK+ + ++V+FTA L YA P++D +D ++ RL+R
Sbjct: 198 KRPGVDEFLKKMGDMFEIVVFTASLAKYADPVLDMLDHSHVIRHRLFR 245
>sp|O14595|CTDS2_HUMAN Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 2 OS=Homo sapiens GN=CTDSP2 PE=1 SV=2
Length = 271
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 19/112 (16%)
Query: 111 KLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTVF 170
++ VV+DLDETLV SS I + E+E + + V V
Sbjct: 101 RICVVIDLDETLV----HSSFKPINNADF----IVPIEIEGTT-----------HQVYVL 141
Query: 171 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTV 222
+RP + EFL+++ E + VLFTA L YA P+ D +DR +F RL+R S V
Sbjct: 142 KRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCV 193
>sp|Q8BX07|CTDS2_MOUSE Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 2 OS=Mus musculus GN=Ctdsp2 PE=2 SV=1
Length = 270
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 19/116 (16%)
Query: 107 QEIEKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINY 166
Q+ ++ VV+DLDETLV SS I A+ + + E+E + +
Sbjct: 96 QDQGRICVVIDLDETLV----HSSFKPI---NNADFIVPV-EIEGTT-----------HQ 136
Query: 167 VTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTV 222
V V +RP + EFL+++ E + VLFTA L YA P+ D +DR +F RL+R + V
Sbjct: 137 VYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFREACV 192
>sp|Q07949|PSR2_YEAST Probable phosphatase PSR2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSR2 PE=1 SV=1
Length = 397
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 19/109 (17%)
Query: 110 EKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTV 169
+K ++LDLDETLV + + +A+ L + E D + ++ V V
Sbjct: 226 QKKCLILDLDETLVHS-------SFKYMHSADFVLPV----------EIDDQ--VHNVYV 266
Query: 170 FERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYR 218
+RPG+ EFL ++++ ++V+FTA + YA PL+D +D RL+R
Sbjct: 267 IKRPGVDEFLNRVSQLYEVVVFTASVSRYANPLLDTLDPNGTIHHRLFR 315
>sp|Q54GB2|CTSL2_DICDI CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum
GN=ctdspl2 PE=3 SV=1
Length = 567
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 21/113 (18%)
Query: 111 KLTVVLDLDETLV-CAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTV 169
K+++VLDLDETLV C+ E P + F + +++ + K
Sbjct: 390 KISLVLDLDETLVHCSTEPLEQPHLT-----------FPVFFNNTEYQVFAK-------- 430
Query: 170 FERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTV 222
+RP EFL K+++ ++++FTA E YA L++ ID N RLYR S V
Sbjct: 431 -KRPFFEEFLHKVSDIFEVIIFTASQEVYANKLLNMIDPNNKIKYRLYRDSCV 482
>sp|O59718|NEM1_SCHPO Nuclear envelope morphology protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nem1 PE=3 SV=1
Length = 476
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 18/114 (15%)
Query: 106 GQEIEKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKIN 165
++ + T+VLDLDETL+ + S RT + + +E G+ I
Sbjct: 298 NSKLPRKTLVLDLDETLIHSVSRGS-----RTTSGQP------IEV-----HVPGEHPIL 341
Query: 166 YVTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRE-NLFSLRLYR 218
Y + +RP L FL ++++ L+LFTA ++ YA P++D ++R+ +F+ R YR
Sbjct: 342 YY-IHKRPHLDYFLSNVSQWFRLILFTASVQPYADPIIDYLERDKKIFAKRYYR 394
>sp|Q07800|PSR1_YEAST Phosphatase PSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PSR1 PE=1 SV=1
Length = 427
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 19/108 (17%)
Query: 111 KLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTVF 170
K ++LDLDETLV + + ++A+ L + E D + ++ V V
Sbjct: 257 KKCLILDLDETLVHS-------SFKYLRSADFVLSV----------EIDDQ--VHNVYVI 297
Query: 171 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYR 218
+RPG+ EFL+++ + ++V+FTA + Y PL+D +D + + RL+R
Sbjct: 298 KRPGVEEFLERVGKLFEVVVFTASVSRYGDPLLDILDTDKVIHHRLFR 345
>sp|Q9XYL0|CTDS_DICDI Probable C-terminal domain small phosphatase OS=Dictyostelium
discoideum GN=fcpA PE=3 SV=1
Length = 306
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 21/109 (19%)
Query: 113 TVVLDLDETLV-CAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTVFE 171
T+VLDLDETLV +++ P I E I+ V V +
Sbjct: 138 TLVLDLDETLVHSSFKPVHNPDFIVPVEIEGT--------------------IHQVYVVK 177
Query: 172 RPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPS 220
RP + +FL+ +AE ++V+FTA L YA P++D +D + RL+R S
Sbjct: 178 RPFVDDFLRAIAEKFEIVVFTASLAKYADPVLDFLDTGRVIHYRLFRES 226
>sp|Q29I63|CNEP1_DROPS CTD nuclear envelope phosphatase 1 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=l(1)G0269 PE=3 SV=1
Length = 243
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 109 IEKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVT 168
+++ T+VLDLDETL+ ++ A+ R F ++ D P +
Sbjct: 58 VQRKTLVLDLDETLIHSHHN----AMPRNTVKPGTPHDFTVKVT-----IDRNPVRFF-- 106
Query: 169 VFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDR-ENLFSLRLYR 218
V +RP + FL ++++ DLV+FTA +E Y + DK+D N+ R YR
Sbjct: 107 VHKRPHVDYFLDVVSQWYDLVVFTASMEIYGAAVADKLDNGRNILRRRYYR 157
>sp|Q9VRG7|CNEP1_DROME CTD nuclear envelope phosphatase 1 homolog OS=Drosophila
melanogaster GN=l(1)G0269 PE=2 SV=1
Length = 243
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 109 IEKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVT 168
+++ T+VLDLDETL+ ++ A+ R F ++ D P +
Sbjct: 58 VQRKTLVLDLDETLIHSHHN----AMPRNTVKPGTPHDFTVKVT-----IDRNPVRFF-- 106
Query: 169 VFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDR-ENLFSLRLYR 218
V +RP + FL ++++ DLV+FTA +E Y + DK+D N+ R YR
Sbjct: 107 VHKRPHVDYFLDVVSQWYDLVVFTASMEIYGAAVADKLDNGRNILRRRYYR 157
>sp|Q61C05|CNEP1_CAEBR CTD nuclear envelope phosphatase 1 homolog OS=Caenorhabditis
briggsae GN=scpl-2 PE=3 SV=1
Length = 246
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 109 IEKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVT 168
+++ +VLDLDETL+ ++ ++R F + V D P + + +
Sbjct: 55 VKRKILVLDLDETLIHSHHD----GVLRQTVKPGTPSDFTIRVV-----IDRHP-VKF-S 103
Query: 169 VFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDR-ENLFSLRLYR 218
V ERP + FL ++++ +LV+FTA +E Y + DK+DR + R +R
Sbjct: 104 VHERPHVDYFLTVVSQWYELVVFTASMEVYGSSVADKLDRGRGILKRRYFR 154
>sp|Q8JIL9|CNEP1_XENLA CTD nuclear envelope phosphatase 1 OS=Xenopus laevis GN=ctdnep1
PE=1 SV=1
Length = 244
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 108 EIEKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYV 167
++++ +VLDLDETL+ ++ L +R F L+ V D P +V
Sbjct: 58 QVKRKVLVLDLDETLIHSHHDGVLRPTVRPGTPPD----FILKVV-----IDKHPVRFFV 108
Query: 168 TVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDREN-LFSLRLYR 218
+RP + FL+ ++++ +LV+FTA +E Y + DK+D + R YR
Sbjct: 109 --HKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNNKGVLRRRFYR 158
>sp|Q28HW9|CNEP1_XENTR CTD nuclear envelope phosphatase 1 OS=Xenopus tropicalis GN=ctdnep1
PE=2 SV=1
Length = 244
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 108 EIEKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYV 167
++++ +VLDLDETL+ ++ L +R F L+ V D P +V
Sbjct: 58 QVKRKVLVLDLDETLIHSHHDGVLRPTVRPGTPPD----FILKVV-----IDKHPVRFFV 108
Query: 168 TVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDREN-LFSLRLYR 218
+RP + FL+ ++++ +LV+FTA +E Y + DK+D + R YR
Sbjct: 109 --HKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNNRGVLRRRFYR 158
>sp|O95476|CNEP1_HUMAN CTD nuclear envelope phosphatase 1 OS=Homo sapiens GN=CTDNEP1 PE=1
SV=2
Length = 244
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 108 EIEKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYV 167
++++ +VLDLDETL+ ++ L +R F L+ V D P +V
Sbjct: 58 QVKRKILVLDLDETLIHSHHDGVLRPTVRPGTPPD----FILKVV-----IDKHPVRFFV 108
Query: 168 TVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDR-ENLFSLRLYR 218
+RP + FL+ ++++ +LV+FTA +E Y + DK+D ++ R YR
Sbjct: 109 --HKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYR 158
>sp|Q1RMV9|CNEP1_BOVIN CTD nuclear envelope phosphatase 1 OS=Bos taurus GN=CTDNEP1 PE=2
SV=1
Length = 244
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 108 EIEKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYV 167
++++ +VLDLDETL+ ++ L +R F L+ V D P +V
Sbjct: 58 QVKRKILVLDLDETLIHSHHDGVLRPTVRPGTPPD----FILKVV-----IDKHPVRFFV 108
Query: 168 TVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDR-ENLFSLRLYR 218
+RP + FL+ ++++ +LV+FTA +E Y + DK+D ++ R YR
Sbjct: 109 --HKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYR 158
>sp|Q20432|CNEP1_CAEEL CTD nuclear envelope phosphatase 1 homolog OS=Caenorhabditis
elegans GN=scpl-2 PE=3 SV=1
Length = 246
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 109 IEKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVT 168
+++ +VLDLDETL+ ++ ++R F + V D P + + +
Sbjct: 55 VKRKILVLDLDETLIHSHHD----GVLRQTVKPGTPSDFTIRVV-----IDRHP-VKF-S 103
Query: 169 VFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDR-ENLFSLRLYR 218
V ERP + FL ++++ +LV+FTA +E Y + D++DR + R +R
Sbjct: 104 VHERPHVDYFLSVVSQWYELVVFTASMEVYGTSVADRLDRGRGILKRRYFR 154
>sp|Q3B7T6|CNEP1_RAT CTD nuclear envelope phosphatase 1 OS=Rattus norvegicus GN=Ctdnep1
PE=2 SV=2
Length = 244
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 108 EIEKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYV 167
++++ +VLDLDETL+ ++ L +R F L+ V D P +V
Sbjct: 58 QVKRKILVLDLDETLIHSHHDGVLRPTVRPGTPPD----FILKVV-----IDKHPVRFFV 108
Query: 168 TVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDR-ENLFSLRLYR 218
+RP + FL+ ++++ +LV+FTA +E Y + DK+D ++ R YR
Sbjct: 109 --HKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYR 158
>sp|Q3TP92|CNEP1_MOUSE CTD nuclear envelope phosphatase 1 OS=Mus musculus GN=Ctdnep1 PE=2
SV=2
Length = 244
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 108 EIEKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYV 167
++++ +VLDLDETL+ ++ L +R F L+ V D P +V
Sbjct: 58 QVKRKILVLDLDETLIHSHHDGVLRPTVRPGTPPD----FILKVV-----IDKHPVRFFV 108
Query: 168 TVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDR-ENLFSLRLYR 218
+RP + FL+ ++++ +LV+FTA +E Y + DK+D ++ R YR
Sbjct: 109 --HKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYR 158
>sp|Q5U3T3|CNEPB_DANRE CTD nuclear envelope phosphatase 1B OS=Danio rerio GN=ctdnep1b PE=2
SV=1
Length = 245
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 107 QEIEKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINY 166
+++ +VLDLDETL+ ++ L +R F L+ V D P +
Sbjct: 58 NNVKRKILVLDLDETLIHSHHDGVLRPTVRPGTPPD----FILKVV-----IDKHPVRFF 108
Query: 167 VTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDREN-LFSLRLYR 218
V +RP + FL+ ++++ +LV+FTA +E Y + DK+D + R YR
Sbjct: 109 V--HKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNNKAILKRRYYR 159
>sp|Q5U395|CNEPA_DANRE CTD nuclear envelope phosphatase 1A OS=Danio rerio GN=ctdnep1a PE=2
SV=1
Length = 245
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 109 IEKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVT 168
+++ +VLDLDETL+ ++ L +R F L+ V D P +V
Sbjct: 60 VKRKILVLDLDETLIHSHHDGVLRPTVRPGTPPD----FILKVV-----IDKHPVRFFV- 109
Query: 169 VFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDREN-LFSLRLYR 218
+RP + FL+ ++++ +LV+FTA +E Y + DK+D + R YR
Sbjct: 110 -HKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNNRGILKRRYYR 159
>sp|P38757|NEM1_YEAST Nuclear envelope morphology protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NEM1 PE=1 SV=1
Length = 446
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 27/121 (22%)
Query: 110 EKLTVVLDLDETLV------CAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPK 163
+K +V+DLDETL+ + SS ++ + +G++
Sbjct: 250 KKKKLVIDLDETLIHSASRSTTHSNSSQGHLVEVKFGLSGIRTLYF-------------- 295
Query: 164 INYVTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRE--NLFSLRLYRPST 221
+ +RP FL K++++ DL++FTA ++ YA P++D ++ + FS R YR
Sbjct: 296 -----IHKRPYCDLFLTKVSKWYDLIIFTASMKEYADPVIDWLESSFPSSFSKRYYRSDC 350
Query: 222 V 222
V
Sbjct: 351 V 351
>sp|Q196V6|VF355_IIV3 Putative CTD phosphatase-like protein 355R OS=Invertebrate
iridescent virus 3 GN=IIV3-104L PE=3 SV=1
Length = 186
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 110 EKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTV 169
+K ++LDLD TL+CA + ++ R A+ + +E +Y +
Sbjct: 5 KKKLILLDLDNTLICAEDLDTVKDKKRLSQAQKQFRTVRME--------------DYYDI 50
Query: 170 FERPGLHEFLKKLAEFADLVLFTAGLEGYA 199
FERP L EFL L + + ++TA + YA
Sbjct: 51 FERPHLQEFLDYLFKNFKVGVWTASSKDYA 80
>sp|Q9N4V4|SCPL3_CAEEL CTD small phosphatase-like protein 3 OS=Caenorhabditis elegans
GN=scpl-3 PE=3 SV=1
Length = 287
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 32/117 (27%)
Query: 113 TVVLDLDETLV-CAYE-----TSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINY 166
T+VLDLDETLV C+ T P + + + ++L
Sbjct: 66 TLVLDLDETLVHCSLTPLDNATMVFPVVFQNITYQVYVRL-------------------- 105
Query: 167 VTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKID-RENLFSLRLYRPSTV 222
RP L FL ++A+ ++++FTA + YA L D +D R+N RL+R V
Sbjct: 106 -----RPHLRTFLSRMAKTFEIIIFTASKKVYANKLCDILDPRKNHIRHRLFREHCV 157
>sp|Q5RAJ8|TIM50_PONAB Mitochondrial import inner membrane translocase subunit TIM50
OS=Pongo abelii GN=TIMM50 PE=2 SV=1
Length = 353
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 171 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPST 221
+RPG+ ++LA ++V+FT+ A PL+D +D S RL+R +T
Sbjct: 173 KRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDAT 223
>sp|Q3ZCQ8|TIM50_HUMAN Mitochondrial import inner membrane translocase subunit TIM50
OS=Homo sapiens GN=TIMM50 PE=1 SV=2
Length = 353
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 171 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPST 221
+RPG+ ++LA ++V+FT+ A PL+D +D S RL+R +T
Sbjct: 173 KRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDAT 223
>sp|Q9D880|TIM50_MOUSE Mitochondrial import inner membrane translocase subunit TIM50
OS=Mus musculus GN=Timm50 PE=1 SV=1
Length = 353
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 171 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPST 221
+RPG+ ++LA ++V+FT+ A PL+D +D S RL+R +T
Sbjct: 173 KRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDAT 223
>sp|Q3SZB3|TIM50_BOVIN Mitochondrial import inner membrane translocase subunit TIM50
OS=Bos taurus GN=TIMM50 PE=2 SV=1
Length = 355
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 171 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPST 221
+RPG+ ++LA ++V+FT+ A PL+D +D S RL+R +T
Sbjct: 175 KRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDAT 225
>sp|Q8VYE2|TIM50_ARATH Mitochondrial import inner membrane translocase subunit TIM50
OS=Arabidopsis thaliana GN=TIM50 PE=1 SV=1
Length = 376
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 169 VFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPST 221
F+RPG+ FL+ L +F ++V+++ +E Y P+ +K+D +L R +T
Sbjct: 214 TFKRPGVDAFLEHLGKFYEIVVYSDQMEMYVLPVCEKLDPNGYIRYKLARGAT 266
>sp|A4QNX6|CTL2B_DANRE CTD small phosphatase-like protein 2-B OS=Danio rerio GN=ctdspl2b
PE=2 SV=1
Length = 460
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 22/110 (20%)
Query: 111 KLTVVLDLDETLV-CAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTV 169
+ ++VLDLDETLV C+ L EL+ + + I V V
Sbjct: 281 EFSLVLDLDETLVHCS--------------------LNELDDAALTFPVLFQDVIYQVYV 320
Query: 170 FERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKID-RENLFSLRLYR 218
RP EFL+++++ +++LFTA + YA L++ +D R+ L RL+R
Sbjct: 321 RLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPRKQLVRHRLFR 370
>sp|Q6NWD4|TIM50_DANRE Mitochondrial import inner membrane translocase subunit TIM50
OS=Danio rerio GN=timm50 PE=2 SV=2
Length = 387
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 171 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPST 221
+RPG+ ++LA ++V+FT+ A PL+D ID + RL+R +T
Sbjct: 208 KRPGIDYLFQQLAPLYEIVIFTSETGMTAYPLIDSIDPQGFVMYRLFRDAT 258
>sp|Q5XIK8|CTSL2_RAT CTD small phosphatase-like protein 2 OS=Rattus norvegicus
GN=Ctdspl2 PE=2 SV=1
Length = 465
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 22/110 (20%)
Query: 111 KLTVVLDLDETLV-CAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTV 169
+ ++VLDLDETLV C+ L ELE + + I V V
Sbjct: 286 EFSLVLDLDETLVHCS--------------------LNELEDAALTFPVLFQDVIYQVYV 325
Query: 170 FERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKID-RENLFSLRLYR 218
RP EFL+++++ +++LFTA + YA L++ +D ++ L RL+R
Sbjct: 326 RLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFR 375
>sp|Q8BG15|CTSL2_MOUSE CTD small phosphatase-like protein 2 OS=Mus musculus GN=Ctdspl2
PE=1 SV=1
Length = 465
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 22/110 (20%)
Query: 111 KLTVVLDLDETLV-CAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTV 169
+ ++VLDLDETLV C+ L ELE + + I V V
Sbjct: 286 EFSLVLDLDETLVHCS--------------------LNELEDAALTFPVLFQDVIYQVYV 325
Query: 170 FERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKID-RENLFSLRLYR 218
RP EFL+++++ +++LFTA + YA L++ +D ++ L RL+R
Sbjct: 326 RLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFR 375
>sp|Q05D32|CTSL2_HUMAN CTD small phosphatase-like protein 2 OS=Homo sapiens GN=CTDSPL2
PE=1 SV=2
Length = 466
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 22/110 (20%)
Query: 111 KLTVVLDLDETLV-CAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTV 169
+ ++VLDLDETLV C+ L ELE + + I V V
Sbjct: 287 EFSLVLDLDETLVHCS--------------------LNELEDAALTFPVLFQDVIYQVYV 326
Query: 170 FERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKID-RENLFSLRLYR 218
RP EFL+++++ +++LFTA + YA L++ +D ++ L RL+R
Sbjct: 327 RLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFR 376
>sp|Q9P376|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=fcp1 PE=1 SV=1
Length = 723
Score = 38.5 bits (88), Expect = 0.042, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 110 EKLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTV 169
++L++++DLD+T++ A ++ + L ++ + + G Y+
Sbjct: 163 KRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKF 222
Query: 170 FERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKID 207
RPGL +FL+K++E +L ++T G + YA+ + ID
Sbjct: 223 --RPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIID 258
>sp|Q5F3Z7|CTSL2_CHICK CTD small phosphatase-like protein 2 OS=Gallus gallus GN=CTDSPL2
PE=2 SV=2
Length = 466
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 22/110 (20%)
Query: 111 KLTVVLDLDETLV-CAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTV 169
+ ++VLDLDETLV C+ L ELE + + I V V
Sbjct: 287 EFSLVLDLDETLVHCS--------------------LNELEDAALTFPVLFQDVIYQVYV 326
Query: 170 FERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKID-RENLFSLRLYR 218
RP EFL+++++ +++LFTA + YA L++ +D ++ L RL+R
Sbjct: 327 RLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRHRLFR 376
>sp|Q66KM5|CTSL2_XENTR CTD small phosphatase-like protein 2 OS=Xenopus tropicalis
GN=ctdspl2 PE=2 SV=1
Length = 466
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 22/110 (20%)
Query: 111 KLTVVLDLDETLV-CAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTV 169
+ ++VLDLDETLV C+ L ELE + + I V V
Sbjct: 287 EFSLVLDLDETLVHCS--------------------LNELEDAALTFPVLFQDVIYQVYV 326
Query: 170 FERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKID-RENLFSLRLYR 218
RP EFL+++++ +++LFTA + YA L++ +D ++ L RL+R
Sbjct: 327 RLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFR 376
>sp|Q3KQB6|CTL2B_XENLA CTD small phosphatase-like protein 2-B OS=Xenopus laevis
GN=ctdspl2-b PE=2 SV=1
Length = 466
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 22/110 (20%)
Query: 111 KLTVVLDLDETLV-CAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTV 169
+ ++VLDLDETLV C+ L ELE + + I V V
Sbjct: 287 EFSLVLDLDETLVHCS--------------------LNELEDAALTFPVLFQDVIYQVYV 326
Query: 170 FERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKID-RENLFSLRLYR 218
RP EFL+++++ +++LFTA + YA L++ +D ++ L RL+R
Sbjct: 327 RLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFR 376
>sp|Q801R4|CTL2A_XENLA CTD small phosphatase-like protein 2-A OS=Xenopus laevis
GN=ctdspl2-a PE=2 SV=1
Length = 466
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 22/110 (20%)
Query: 111 KLTVVLDLDETLV-CAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTV 169
+ ++VLDLDETLV C+ L ELE + + I V V
Sbjct: 287 EFSLVLDLDETLVHCS--------------------LNELEDAALTFPVLFQDVIYQVYV 326
Query: 170 FERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKID-RENLFSLRLYR 218
RP EFL+++++ +++LFTA + YA L++ +D ++ L RL+R
Sbjct: 327 RLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFR 376
>sp|Q08BB5|CTL2A_DANRE CTD small phosphatase-like protein 2-A OS=Danio rerio GN=ctdspl2a
PE=2 SV=1
Length = 469
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 22/110 (20%)
Query: 111 KLTVVLDLDETLV-CAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTV 169
+ ++VLDLDETLV C+ L ELE + + I V V
Sbjct: 290 EFSLVLDLDETLVHCS--------------------LNELEDAALTFPVLFQDVIYQVYV 329
Query: 170 FERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKID-RENLFSLRLYR 218
RP EFL+++++ +++LFTA + YA L++ +D ++ L RL+R
Sbjct: 330 RLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRHRLFR 379
>sp|P0CN66|TIM50_CRYNJ Mitochondrial import inner membrane translocase subunit TIM50
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=TIM50 PE=3 SV=1
Length = 516
Score = 37.4 bits (85), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 171 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLF-SLRLYRPSTVS 223
+RPG+ FL L++F ++VLF++ A P+ +KID F RL+R ST S
Sbjct: 261 KRPGVDYFLGYLSQFYEIVLFSSQPLYTAAPIAEKIDPYQAFMPYRLFRESTRS 314
>sp|P0CN67|TIM50_CRYNB Mitochondrial import inner membrane translocase subunit TIM50
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=TIM50 PE=3 SV=1
Length = 516
Score = 37.4 bits (85), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 171 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLF-SLRLYRPSTVS 223
+RPG+ FL L++F ++VLF++ A P+ +KID F RL+R ST S
Sbjct: 261 KRPGVDYFLGYLSQFYEIVLFSSQPLYTAAPIAEKIDPYQAFMPYRLFRESTRS 314
>sp|Q9W0S3|TI50B_DROME Mitochondrial import inner membrane translocase subunit TIM50-B
OS=Drosophila melanogaster GN=ttm2 PE=2 SV=1
Length = 409
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 171 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPST 221
+RPG+ FLK+ A++ ++V++TA PLVD +D RL R ST
Sbjct: 235 KRPGVDVFLKECAKYFEIVVYTAEQGVTVFPLVDALDPNGCIMYRLVRDST 285
>sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo
sapiens GN=CTDP1 PE=1 SV=3
Length = 961
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 18/107 (16%)
Query: 111 KLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTVF 170
KL +++DLD+TL+ E Q + G+ F+L G+P ++
Sbjct: 182 KLVLMVDLDQTLIHTTEQHC------QQMSNKGIFHFQL--------GRGEPMLHTRL-- 225
Query: 171 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRE-NLFSLRL 216
RP +FL+K+A+ +L +FT G YA + +D E LFS R+
Sbjct: 226 -RPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRI 271
>sp|Q7TSG2|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus
musculus GN=Ctdp1 PE=1 SV=1
Length = 960
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 18/107 (16%)
Query: 111 KLTVVLDLDETLVCAYETSSLPAIIRTQAAEAGLKLFELECVSSDKECDGKPKINYVTVF 170
KL +++DLD+TL+ E Q + G+ F+L G+P ++
Sbjct: 182 KLVLMVDLDQTLIHTTEQHC------PQMSNKGIFHFQL--------GRGEPMLHTRL-- 225
Query: 171 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRE-NLFSLRL 216
RP +FL+K+A+ +L +FT G YA + +D E LFS R+
Sbjct: 226 -RPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRI 271
>sp|O13636|TIM50_SCHPO Mitochondrial import inner membrane translocase subunit tim50
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim50 PE=3 SV=1
Length = 452
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 171 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKID 207
+RPGL FL L+ + ++V+FT A+P++DKID
Sbjct: 202 KRPGLDYFLGYLSMYYEVVIFTRQYLATAKPIIDKID 238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,812,184
Number of Sequences: 539616
Number of extensions: 3442930
Number of successful extensions: 10605
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 10489
Number of HSP's gapped (non-prelim): 106
length of query: 224
length of database: 191,569,459
effective HSP length: 113
effective length of query: 111
effective length of database: 130,592,851
effective search space: 14495806461
effective search space used: 14495806461
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)