Query 027385
Match_columns 224
No_of_seqs 241 out of 769
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 15:08:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 3.2E-57 1.1E-61 369.0 11.7 139 3-151 4-142 (143)
2 2ecm_A Ring finger and CHY zin 99.5 1.6E-14 5.3E-19 96.9 3.7 52 148-200 3-54 (55)
3 2ep4_A Ring finger protein 24; 99.4 1.4E-13 4.8E-18 97.7 4.5 56 146-203 11-66 (74)
4 1iym_A EL5; ring-H2 finger, ub 99.4 1.2E-13 4.1E-18 92.6 3.4 49 150-200 5-54 (55)
5 2kiz_A E3 ubiquitin-protein li 99.4 2.3E-13 7.8E-18 95.4 4.5 53 147-201 11-63 (69)
6 2ecl_A Ring-box protein 2; RNF 99.4 2.9E-13 9.8E-18 98.9 5.0 50 150-200 26-75 (81)
7 1x4j_A Ring finger protein 38; 99.4 1.2E-13 4E-18 98.7 2.8 53 148-202 21-73 (75)
8 1v87_A Deltex protein 2; ring- 99.3 6.4E-13 2.2E-17 101.6 4.7 56 147-202 22-95 (114)
9 2l0b_A E3 ubiquitin-protein li 99.3 5.3E-13 1.8E-17 99.3 3.6 52 148-201 38-89 (91)
10 2ect_A Ring finger protein 126 99.3 7.6E-13 2.6E-17 94.8 3.6 52 148-201 13-64 (78)
11 3ng2_A RNF4, snurf, ring finge 99.3 1.1E-12 3.7E-17 91.9 3.4 53 148-201 8-63 (71)
12 2ea6_A Ring finger protein 4; 99.3 1.1E-12 3.8E-17 91.1 3.1 52 148-200 13-67 (69)
13 2xeu_A Ring finger protein 4; 99.3 1.7E-12 5.7E-17 88.9 3.7 51 150-201 3-56 (64)
14 1g25_A CDK-activating kinase a 99.3 3.6E-12 1.2E-16 88.5 4.5 52 150-201 3-55 (65)
15 1chc_A Equine herpes virus-1 r 99.2 3.4E-12 1.2E-16 89.0 3.4 50 149-202 4-53 (68)
16 2ct2_A Tripartite motif protei 99.2 8.7E-12 3E-16 90.5 4.5 53 149-201 14-68 (88)
17 1e4u_A Transcriptional repress 99.2 1.2E-12 4E-17 95.9 -0.3 60 149-210 10-71 (78)
18 3dpl_R Ring-box protein 1; ubi 99.2 1.3E-11 4.6E-16 95.2 4.8 49 150-199 48-99 (106)
19 2ecn_A Ring finger protein 141 99.2 1.9E-12 6.6E-17 90.9 -0.5 51 148-204 13-63 (70)
20 2d8t_A Dactylidin, ring finger 99.1 1.4E-11 4.6E-16 87.1 3.0 49 148-201 13-61 (71)
21 2csy_A Zinc finger protein 183 99.1 2.3E-11 7.7E-16 87.9 4.2 61 149-214 14-74 (81)
22 2k2d_A Ring finger and CHY zin 99.1 4.6E-12 1.6E-16 93.6 0.2 33 192-224 1-33 (79)
23 2djb_A Polycomb group ring fin 99.1 2.5E-11 8.6E-16 85.9 3.6 49 149-201 14-62 (72)
24 4ap4_A E3 ubiquitin ligase RNF 99.1 2.9E-11 1E-15 93.2 3.5 53 148-201 5-60 (133)
25 4ayc_A E3 ubiquitin-protein li 99.1 7.7E-11 2.6E-15 93.6 5.7 46 151-201 54-99 (138)
26 2ecy_A TNF receptor-associated 99.1 3.8E-11 1.3E-15 83.5 3.3 48 150-201 15-62 (66)
27 2ysl_A Tripartite motif-contai 99.1 6E-11 2.1E-15 83.5 3.6 49 148-200 18-68 (73)
28 1t1h_A Gspef-atpub14, armadill 99.1 1.4E-10 4.8E-15 82.9 5.5 48 149-200 7-54 (78)
29 2d8s_A Cellular modulator of i 99.1 8.3E-11 2.8E-15 86.5 3.7 51 148-200 13-69 (80)
30 2yur_A Retinoblastoma-binding 99.0 4.2E-11 1.4E-15 85.4 2.0 51 149-203 14-66 (74)
31 3lrq_A E3 ubiquitin-protein li 99.0 7.5E-11 2.6E-15 89.0 3.1 48 150-200 22-69 (100)
32 3fl2_A E3 ubiquitin-protein li 99.0 1.3E-10 4.5E-15 90.3 4.0 62 150-215 52-115 (124)
33 2ysj_A Tripartite motif-contai 99.0 2.2E-10 7.4E-15 78.8 4.1 43 149-195 19-63 (63)
34 2y43_A E3 ubiquitin-protein li 99.0 1.7E-10 5.8E-15 86.2 3.5 48 150-201 22-69 (99)
35 4a0k_B E3 ubiquitin-protein li 99.0 5.1E-11 1.7E-15 93.8 0.5 50 149-199 47-110 (117)
36 2ckl_A Polycomb group ring fin 99.0 3.7E-10 1.3E-14 85.7 4.9 49 149-201 14-62 (108)
37 3ztg_A E3 ubiquitin-protein li 99.0 9.6E-11 3.3E-15 86.2 1.5 48 149-200 12-61 (92)
38 2ckl_B Ubiquitin ligase protei 99.0 3E-10 1E-14 92.4 4.4 48 150-200 54-101 (165)
39 1rmd_A RAG1; V(D)J recombinati 99.0 2E-10 6.7E-15 88.2 3.2 65 150-218 23-89 (116)
40 2ecj_A Tripartite motif-contai 99.0 3E-10 1E-14 76.3 3.6 43 149-195 14-58 (58)
41 4ap4_A E3 ubiquitin ligase RNF 99.0 3.5E-10 1.2E-14 87.1 4.4 53 148-201 70-125 (133)
42 2ecw_A Tripartite motif-contai 99.0 5E-10 1.7E-14 80.2 4.5 48 149-200 18-70 (85)
43 3hct_A TNF receptor-associated 99.0 2.6E-10 8.7E-15 88.2 3.1 64 150-217 18-82 (118)
44 2egp_A Tripartite motif-contai 98.9 1.1E-10 3.6E-15 83.2 0.3 49 149-201 11-65 (79)
45 3l11_A E3 ubiquitin-protein li 98.9 1.7E-10 5.7E-15 88.5 0.9 47 150-200 15-61 (115)
46 2ecv_A Tripartite motif-contai 98.9 4.9E-10 1.7E-14 80.2 3.2 49 149-201 18-71 (85)
47 1jm7_A BRCA1, breast cancer ty 98.8 1.5E-09 5.3E-14 82.0 3.3 47 150-200 21-69 (112)
48 1z6u_A NP95-like ring finger p 98.8 2E-09 6.8E-14 87.2 3.9 48 150-201 78-125 (150)
49 2vje_A E3 ubiquitin-protein li 98.7 2.5E-09 8.6E-14 74.8 2.0 52 146-202 4-58 (64)
50 2vje_B MDM4 protein; proto-onc 98.7 3.9E-09 1.3E-13 73.6 1.9 51 148-203 5-58 (63)
51 3knv_A TNF receptor-associated 98.7 3.9E-09 1.3E-13 84.8 0.7 47 149-199 30-76 (141)
52 3hcs_A TNF receptor-associated 98.6 9.2E-09 3.1E-13 83.7 2.7 64 150-217 18-82 (170)
53 1bor_A Transcription factor PM 98.6 4.5E-09 1.6E-13 71.3 0.6 45 148-200 4-48 (56)
54 4ic3_A E3 ubiquitin-protein li 98.6 4.7E-09 1.6E-13 75.1 0.5 44 150-202 24-68 (74)
55 1jm7_B BARD1, BRCA1-associated 98.6 9.9E-09 3.4E-13 79.1 0.9 45 150-200 22-66 (117)
56 2y1n_A E3 ubiquitin-protein li 98.5 5.2E-08 1.8E-12 90.5 4.8 49 149-201 331-379 (389)
57 2ct0_A Non-SMC element 1 homol 98.5 4.6E-08 1.6E-12 71.1 3.3 48 150-200 15-63 (74)
58 2kr4_A Ubiquitin conjugation f 98.5 9.2E-08 3.1E-12 70.3 3.6 47 149-200 13-59 (85)
59 1wim_A KIAA0161 protein; ring 98.4 1.9E-07 6.6E-12 69.1 5.0 49 149-198 4-61 (94)
60 2c2l_A CHIP, carboxy terminus 98.4 2.5E-07 8.7E-12 79.1 6.5 73 146-222 204-281 (281)
61 2ecg_A Baculoviral IAP repeat- 98.4 5.7E-08 1.9E-12 69.4 1.5 44 150-202 25-69 (75)
62 2ea5_A Cell growth regulator w 98.4 8E-08 2.7E-12 68.0 2.1 48 148-204 13-61 (68)
63 2kre_A Ubiquitin conjugation f 98.4 1.4E-07 4.9E-12 71.6 3.4 47 149-200 28-74 (100)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.4 1.7E-07 5.8E-12 65.2 3.2 51 146-200 2-58 (60)
65 1wgm_A Ubiquitin conjugation f 98.4 2.3E-07 7.9E-12 70.2 3.6 47 149-200 21-68 (98)
66 2yu4_A E3 SUMO-protein ligase 98.3 5.7E-07 2E-11 67.0 3.7 47 149-198 6-59 (94)
67 2yho_A E3 ubiquitin-protein li 98.2 1.3E-07 4.6E-12 68.7 0.0 46 150-204 18-64 (79)
68 3k1l_B Fancl; UBC, ring, RWD, 98.2 3.2E-07 1.1E-11 84.4 1.9 53 148-200 306-372 (381)
69 2f42_A STIP1 homology and U-bo 98.0 5.9E-06 2E-10 69.2 6.1 48 149-200 105-152 (179)
70 3htk_C E3 SUMO-protein ligase 97.9 4.3E-06 1.5E-10 74.1 2.7 50 148-200 179-231 (267)
71 3t6p_A Baculoviral IAP repeat- 97.8 2.7E-06 9.3E-11 77.6 -0.2 44 150-202 295-339 (345)
72 3vk6_A E3 ubiquitin-protein li 97.6 4.2E-05 1.4E-09 58.6 3.5 50 152-204 3-52 (101)
73 2bay_A PRE-mRNA splicing facto 97.5 3.6E-05 1.2E-09 53.3 2.6 49 149-201 2-50 (61)
74 3nw0_A Non-structural maintena 96.0 0.0036 1.2E-07 54.1 3.5 47 150-199 180-227 (238)
75 2lbm_A Transcriptional regulat 92.8 0.099 3.4E-06 42.1 4.1 67 145-215 58-139 (142)
76 2ko5_A Ring finger protein Z; 91.2 0.062 2.1E-06 40.7 1.1 44 150-200 28-72 (99)
77 2jrp_A Putative cytoplasmic pr 90.7 0.058 2E-06 39.6 0.6 28 67-99 33-60 (81)
78 2jun_A Midline-1; B-BOX, TRIM, 90.4 0.15 5.2E-06 37.2 2.6 34 149-184 2-36 (101)
79 2jne_A Hypothetical protein YF 87.1 0.27 9.1E-06 37.4 1.9 9 89-97 80-88 (101)
80 2ysm_A Myeloid/lymphoid or mix 86.4 0.11 3.9E-06 39.1 -0.4 84 112-199 9-105 (111)
81 3v43_A Histone acetyltransfera 85.3 0.15 5E-06 38.8 -0.3 75 120-197 22-111 (112)
82 2kwj_A Zinc finger protein DPF 78.8 0.1 3.5E-06 39.9 -3.4 86 112-201 3-111 (114)
83 1weo_A Cellulose synthase, cat 78.3 3.2 0.00011 31.0 4.8 56 145-200 11-69 (93)
84 2ysm_A Myeloid/lymphoid or mix 77.5 2.3 8E-05 31.7 4.0 69 64-136 6-81 (111)
85 2lri_C Autoimmune regulator; Z 76.3 1.2 4.2E-05 30.9 1.9 45 149-197 11-58 (66)
86 4bbq_A Lysine-specific demethy 74.4 0.44 1.5E-05 35.9 -0.9 46 151-197 60-113 (117)
87 3lqh_A Histone-lysine N-methyl 74.3 1.1 3.6E-05 37.3 1.3 52 150-201 2-66 (183)
88 1we9_A PHD finger family prote 71.6 0.39 1.3E-05 32.6 -1.6 50 149-198 5-58 (64)
89 3ql9_A Transcriptional regulat 71.4 3.7 0.00013 32.3 3.8 68 129-200 36-113 (129)
90 1zfo_A LAsp-1; LIM domain, zin 67.7 1.4 4.9E-05 25.9 0.5 30 149-181 2-31 (31)
91 2k16_A Transcription initiatio 64.9 1.3 4.6E-05 30.8 0.0 48 151-200 19-70 (75)
92 2egq_A FHL1 protein; LIM domai 62.9 2.8 9.5E-05 28.6 1.3 42 149-201 14-58 (77)
93 1x61_A Thyroid receptor intera 62.0 4 0.00014 27.3 2.0 40 150-200 5-44 (72)
94 1g47_A Pinch protein; LIM doma 60.9 3.8 0.00013 27.8 1.8 43 148-201 9-51 (77)
95 2dkt_A Ring finger and CHY zin 60.5 2.7 9.2E-05 33.8 1.0 32 89-120 97-128 (143)
96 1f62_A Transcription factor WS 60.5 3.8 0.00013 26.3 1.6 46 152-198 2-50 (51)
97 1x63_A Skeletal muscle LIM-pro 59.8 3.7 0.00013 28.2 1.6 41 150-201 15-55 (82)
98 2l5u_A Chromodomain-helicase-D 56.3 4.8 0.00016 27.1 1.6 48 147-198 8-58 (61)
99 1wyh_A SLIM 2, skeletal muscle 55.3 4.1 0.00014 27.2 1.1 41 150-201 5-45 (72)
100 1x4l_A Skeletal muscle LIM-pro 55.1 6.5 0.00022 26.3 2.1 41 150-201 5-47 (72)
101 1wev_A Riken cDNA 1110020M19; 54.8 0.86 2.9E-05 33.3 -2.6 55 149-204 15-78 (88)
102 2k4x_A 30S ribosomal protein S 54.2 9.7 0.00033 25.4 2.8 9 78-86 18-26 (55)
103 3mjh_B Early endosome antigen 52.6 7.4 0.00025 23.8 1.8 15 189-203 5-19 (34)
104 4ayb_P DNA-directed RNA polyme 52.2 6.9 0.00024 25.8 1.8 20 67-86 5-31 (48)
105 1wil_A KIAA1045 protein; ring 51.7 13 0.00046 27.4 3.4 44 148-196 13-74 (89)
106 2ehe_A Four and A half LIM dom 51.7 7.1 0.00024 26.8 1.9 41 150-201 15-55 (82)
107 1wep_A PHF8; structural genomi 51.5 8.1 0.00028 27.1 2.2 49 151-200 13-65 (79)
108 2kgg_A Histone demethylase jar 51.4 2.6 8.9E-05 27.5 -0.4 45 152-196 4-52 (52)
109 1iml_A CRIP, cysteine rich int 50.7 4.2 0.00014 27.7 0.6 9 192-200 30-38 (76)
110 1klr_A Zinc finger Y-chromosom 50.7 14 0.00049 18.7 2.8 18 189-206 2-19 (30)
111 1x4k_A Skeletal muscle LIM-pro 50.1 6.8 0.00023 26.1 1.6 40 151-201 6-45 (72)
112 1x6a_A LIMK-2, LIM domain kina 49.3 6.9 0.00023 26.8 1.5 38 150-200 15-52 (81)
113 1mm2_A MI2-beta; PHD, zinc fin 48.8 3.4 0.00012 27.9 -0.1 49 148-200 7-58 (61)
114 1x68_A FHL5 protein; four-and- 48.7 8.3 0.00028 26.2 1.9 41 150-201 5-47 (76)
115 2jrp_A Putative cytoplasmic pr 48.7 7.1 0.00024 28.4 1.5 15 122-137 50-64 (81)
116 2i13_A AART; DNA binding, zinc 48.5 4.5 0.00015 31.5 0.5 18 188-205 160-177 (190)
117 2cu8_A Cysteine-rich protein 2 48.2 6.3 0.00022 26.7 1.2 40 150-201 9-48 (76)
118 2cup_A Skeletal muscle LIM-pro 47.3 6.9 0.00024 27.9 1.3 43 152-200 35-77 (101)
119 2xb1_A Pygopus homolog 2, B-ce 46.3 1.3 4.4E-05 33.4 -2.9 50 150-200 3-63 (105)
120 2co8_A NEDD9 interacting prote 45.9 8.3 0.00029 26.8 1.5 43 148-202 13-55 (82)
121 1x5w_A Zinc finger protein 64, 45.3 14 0.00049 23.7 2.6 33 188-220 36-68 (70)
122 2jvx_A NF-kappa-B essential mo 43.9 7.2 0.00025 22.9 0.8 16 189-204 3-18 (28)
123 2dj7_A Actin-binding LIM prote 43.8 11 0.00037 26.1 1.9 41 149-201 14-54 (80)
124 3j20_Y 30S ribosomal protein S 43.7 11 0.00036 24.7 1.7 9 78-86 19-27 (50)
125 3i2d_A E3 SUMO-protein ligase 42.8 18 0.0006 33.2 3.6 48 150-200 249-299 (371)
126 1x4s_A Protein FON, zinc finge 42.7 10 0.00035 26.0 1.5 24 64-87 10-35 (59)
127 2e6s_A E3 ubiquitin-protein li 41.8 7.4 0.00025 27.6 0.7 65 121-197 7-76 (77)
128 1x3h_A Leupaxin; paxillin fami 41.6 12 0.0004 25.5 1.7 39 150-201 15-53 (80)
129 2d8x_A Protein pinch; LIM doma 41.5 12 0.00041 24.8 1.7 40 150-202 5-44 (70)
130 2cor_A Pinch protein; LIM doma 41.3 12 0.0004 25.8 1.7 40 149-201 14-53 (79)
131 4fo9_A E3 SUMO-protein ligase 41.3 19 0.00064 32.9 3.5 48 150-200 215-265 (360)
132 3f6q_B LIM and senescent cell 41.2 9.3 0.00032 25.1 1.1 44 148-202 9-52 (72)
133 2dar_A PDZ and LIM domain prot 41.1 11 0.00038 26.4 1.6 42 147-201 22-63 (90)
134 1qxf_A GR2, 30S ribosomal prot 40.7 11 0.00037 26.5 1.4 35 65-99 7-47 (66)
135 2cur_A Skeletal muscle LIM-pro 40.0 14 0.00047 24.4 1.8 38 150-200 5-42 (69)
136 3v43_A Histone acetyltransfera 39.8 29 0.001 25.7 3.9 27 170-196 30-62 (112)
137 2m0e_A Zinc finger and BTB dom 39.7 19 0.00063 18.1 2.1 17 189-205 2-18 (29)
138 1znf_A 31ST zinc finger from X 39.2 15 0.00053 18.3 1.6 15 190-204 2-16 (27)
139 1ard_A Yeast transcription fac 38.5 20 0.00069 18.0 2.1 16 189-204 2-17 (29)
140 1rim_A E6APC2 peptide; E6-bind 37.3 29 0.00099 18.8 2.7 19 189-207 2-20 (33)
141 2kvf_A Zinc finger and BTB dom 37.3 14 0.00048 18.8 1.3 16 189-204 3-18 (28)
142 2fiy_A Protein FDHE homolog; F 37.1 26 0.00088 31.1 3.6 24 64-87 207-231 (309)
143 1v6g_A Actin binding LIM prote 36.3 15 0.00051 25.1 1.6 39 150-201 15-53 (81)
144 2kdx_A HYPA, hydrogenase/ureas 36.2 11 0.00037 28.4 0.9 10 65-74 73-82 (119)
145 3lpe_B DNA-directed RNA polyme 36.1 16 0.00053 24.9 1.6 19 67-86 3-21 (59)
146 1vq8_Z 50S ribosomal protein L 36.0 13 0.00046 26.9 1.3 32 78-120 27-58 (83)
147 3o70_A PHD finger protein 13; 36.0 3 0.0001 29.0 -2.1 49 147-198 16-67 (68)
148 1p7a_A BF3, BKLF, kruppel-like 35.6 22 0.00075 19.4 2.0 17 188-204 10-26 (37)
149 3u5c_b RP61, YS20, 40S ribosom 35.3 23 0.00078 25.8 2.5 36 64-99 33-74 (82)
150 1ryq_A DNA-directed RNA polyme 35.2 21 0.00073 25.1 2.2 24 63-87 9-32 (69)
151 2elr_A Zinc finger protein 406 35.2 23 0.0008 19.1 2.1 18 188-205 8-25 (36)
152 2vpb_A Hpygo1, pygopus homolog 35.0 18 0.00063 24.7 1.9 34 149-182 7-41 (65)
153 3j20_W 30S ribosomal protein S 34.9 16 0.00054 25.4 1.5 35 64-98 14-54 (63)
154 2l3k_A Rhombotin-2, linker, LI 34.8 13 0.00044 27.8 1.1 13 173-185 57-69 (123)
155 1paa_A Yeast transcription fac 34.4 23 0.0008 18.0 1.9 17 189-205 2-18 (30)
156 1nyp_A Pinch protein; LIM doma 34.0 10 0.00035 24.8 0.4 39 150-201 5-43 (66)
157 2kvh_A Zinc finger and BTB dom 33.9 17 0.00059 18.3 1.3 16 189-204 3-18 (27)
158 1rik_A E6APC1 peptide; E6-bind 33.6 19 0.00065 18.2 1.4 16 189-204 2-17 (29)
159 2kvg_A Zinc finger and BTB dom 33.5 14 0.00049 18.9 0.9 16 189-204 3-18 (27)
160 1qyp_A RNA polymerase II; tran 33.3 26 0.00089 22.9 2.4 34 80-114 17-50 (57)
161 3u5n_A E3 ubiquitin-protein li 32.9 7.4 0.00025 32.1 -0.6 48 148-199 5-55 (207)
162 2cuq_A Four and A half LIM dom 32.2 24 0.00083 23.8 2.1 38 150-200 15-52 (80)
163 3u5c_f 40S ribosomal protein S 32.0 23 0.00077 28.1 2.2 21 78-98 118-146 (152)
164 2puy_A PHD finger protein 21A; 31.7 3 0.0001 27.9 -2.7 48 149-200 4-54 (60)
165 2m0f_A Zinc finger and BTB dom 31.6 20 0.00069 18.0 1.3 16 189-204 2-17 (29)
166 2ct0_A Non-SMC element 1 homol 31.4 34 0.0011 23.9 2.8 29 60-88 10-38 (74)
167 2m0d_A Zinc finger and BTB dom 31.3 20 0.0007 18.1 1.3 16 189-204 3-18 (30)
168 1x62_A C-terminal LIM domain p 31.2 20 0.00069 24.4 1.6 40 149-201 14-53 (79)
169 1wew_A DNA-binding family prot 31.1 6.5 0.00022 27.7 -1.0 50 149-201 15-75 (78)
170 2iyb_E Testin, TESS, TES; LIM 30.8 14 0.00049 24.3 0.7 39 152-201 4-44 (65)
171 1wem_A Death associated transc 30.8 5.4 0.00018 27.8 -1.5 47 151-199 17-71 (76)
172 2elx_A Zinc finger protein 406 30.7 19 0.00066 19.2 1.2 17 188-204 6-22 (35)
173 1twf_L ABC10-alpha, DNA-direct 30.6 24 0.00082 24.7 1.9 8 108-115 46-53 (70)
174 2ytm_A Zinc finger protein 28 30.5 43 0.0015 19.4 2.9 21 188-208 11-31 (46)
175 1m3v_A FLIN4, fusion of the LI 30.0 41 0.0014 24.9 3.3 48 152-201 34-81 (122)
176 2emz_A ZFP-95, zinc finger pro 30.0 49 0.0017 19.0 3.1 20 188-207 11-30 (46)
177 2dlo_A Thyroid receptor-intera 29.9 23 0.00077 24.1 1.7 39 150-201 15-53 (81)
178 3iz6_X 40S ribosomal protein S 29.7 28 0.00096 25.6 2.2 35 65-99 36-76 (86)
179 1wig_A KIAA1808 protein; LIM d 29.5 23 0.00077 23.9 1.6 37 151-200 6-42 (73)
180 2ayj_A 50S ribosomal protein L 29.5 41 0.0014 22.7 2.8 26 62-87 16-42 (56)
181 2xzm_6 RPS27E; ribosome, trans 29.5 21 0.00073 25.9 1.5 36 64-99 31-72 (81)
182 2pv0_B DNA (cytosine-5)-methyl 29.4 41 0.0014 30.9 3.7 71 125-199 68-149 (386)
183 2epr_A POZ-, at HOOK-, and zin 29.4 30 0.001 20.4 2.0 9 106-114 39-47 (48)
184 2l43_A N-teminal domain from h 29.3 10 0.00034 27.5 -0.3 50 149-200 24-77 (88)
185 2elo_A Zinc finger protein 406 29.1 28 0.00096 18.9 1.7 17 188-204 8-24 (37)
186 2yt5_A Metal-response element- 28.7 32 0.0011 22.8 2.3 25 89-113 5-29 (66)
187 2lvu_A Zinc finger and BTB dom 34.4 12 0.00042 18.8 0.0 15 189-203 2-16 (26)
188 2yql_A PHD finger protein 21A; 28.0 3.7 0.00012 27.1 -2.7 45 148-196 7-54 (56)
189 2yte_A Zinc finger protein 473 27.6 36 0.0012 19.0 2.1 18 188-205 9-26 (42)
190 3o36_A Transcription intermedi 27.4 13 0.00046 29.8 0.1 46 150-199 4-52 (184)
191 2eou_A Zinc finger protein 473 27.3 50 0.0017 18.8 2.8 18 188-205 11-28 (44)
192 3uk3_C Zinc finger protein 217 27.2 50 0.0017 19.7 2.9 19 188-206 31-49 (57)
193 2lv9_A Histone-lysine N-methyl 27.1 26 0.00089 25.6 1.6 32 171-202 47-80 (98)
194 2els_A Zinc finger protein 406 27.0 26 0.00089 19.0 1.3 17 188-204 8-24 (36)
195 1vd4_A Transcription initiatio 26.8 36 0.0012 21.6 2.1 10 80-89 16-25 (62)
196 2lvt_A Zinc finger and BTB dom 32.8 13 0.00046 19.0 0.0 16 189-204 2-17 (29)
197 3asl_A E3 ubiquitin-protein li 26.8 84 0.0029 21.4 4.2 24 112-135 20-44 (70)
198 2elv_A Zinc finger protein 406 26.8 26 0.00089 19.0 1.3 17 188-204 8-24 (36)
199 3gox_A Restriction endonucleas 26.7 49 0.0017 27.8 3.4 73 117-200 68-148 (200)
200 2emk_A Zinc finger protein 28 26.5 46 0.0016 19.2 2.5 21 188-208 11-31 (46)
201 2v3b_B Rubredoxin 2, rubredoxi 26.5 37 0.0013 22.5 2.2 14 88-101 1-15 (55)
202 2ely_A Zinc finger protein 224 26.3 46 0.0016 19.2 2.4 20 188-207 11-30 (46)
203 3a7q_B Low-density lipoprotein 26.2 52 0.0018 20.4 2.7 31 123-154 11-43 (44)
204 2gqj_A Zinc finger protein KIA 26.0 37 0.0013 23.5 2.2 31 189-219 54-84 (98)
205 1ajj_A LR5, low-density lipopr 25.9 41 0.0014 20.0 2.1 31 123-154 5-37 (37)
206 2elt_A Zinc finger protein 406 25.7 28 0.00096 18.7 1.3 17 188-204 8-24 (36)
207 2lvr_A Zinc finger and BTB dom 31.6 15 0.0005 18.8 0.0 16 189-204 3-18 (30)
208 2elq_A Zinc finger protein 406 25.5 28 0.00097 18.8 1.3 17 188-204 8-24 (36)
209 2eov_A Zinc finger protein 484 25.4 48 0.0016 18.9 2.4 18 188-205 11-28 (46)
210 3shb_A E3 ubiquitin-protein li 24.9 50 0.0017 23.2 2.7 21 115-135 31-52 (77)
211 3o7a_A PHD finger protein 13 v 24.8 4.5 0.00015 26.3 -2.7 29 170-198 22-52 (52)
212 2en9_A Zinc finger protein 28 24.7 57 0.0019 18.7 2.7 18 188-205 11-28 (46)
213 2ri7_A Nucleosome-remodeling f 24.6 8.4 0.00029 30.6 -1.6 49 150-199 8-60 (174)
214 2en7_A Zinc finger protein 268 24.5 43 0.0015 18.9 2.1 18 188-205 11-28 (44)
215 1xwh_A Autoimmune regulator; P 24.5 5.6 0.00019 27.1 -2.4 47 148-198 6-55 (66)
216 2epx_A Zinc finger protein 28 24.4 42 0.0014 19.3 2.0 18 188-205 11-28 (47)
217 1srk_A Zinc finger protein ZFP 24.2 31 0.0011 18.4 1.3 17 188-204 6-22 (35)
218 2eoq_A Zinc finger protein 224 24.1 43 0.0015 19.3 2.0 18 188-205 11-28 (46)
219 2yqq_A Zinc finger HIT domain- 24.1 38 0.0013 22.8 1.8 16 81-97 15-30 (56)
220 4esj_A Type-2 restriction enzy 24.1 34 0.0012 29.8 2.0 19 79-97 35-63 (257)
221 2ytb_A Zinc finger protein 32; 24.0 29 0.00099 19.5 1.1 17 188-204 10-26 (42)
222 2eos_A B-cell lymphoma 6 prote 23.8 37 0.0013 19.1 1.6 17 188-204 10-26 (42)
223 2enf_A Zinc finger protein 347 23.7 45 0.0015 19.1 2.1 17 188-204 11-27 (46)
224 2eoo_A ZFP-95, zinc finger pro 23.7 45 0.0016 19.2 2.1 20 188-207 11-30 (46)
225 2emy_A Zinc finger protein 268 23.7 44 0.0015 19.2 2.0 19 188-206 11-29 (46)
226 2eom_A ZFP-95, zinc finger pro 23.6 55 0.0019 18.9 2.4 18 188-205 11-28 (46)
227 2eor_A Zinc finger protein 224 23.5 48 0.0016 19.0 2.1 20 188-207 11-30 (46)
228 2d8z_A Four and A half LIM dom 23.5 34 0.0011 22.4 1.5 37 151-200 6-42 (70)
229 2emp_A Zinc finger protein 347 23.4 47 0.0016 19.1 2.1 20 188-207 11-30 (46)
230 2epc_A Zinc finger protein 32; 23.2 33 0.0011 19.2 1.3 18 188-205 10-27 (42)
231 2eop_A Zinc finger protein 268 23.2 48 0.0016 19.0 2.1 18 188-205 11-28 (46)
232 2en3_A ZFP-95, zinc finger pro 23.2 58 0.002 18.6 2.5 21 188-208 11-31 (46)
233 2ytr_A Zinc finger protein 347 23.2 47 0.0016 19.0 2.0 17 188-204 11-27 (46)
234 2emg_A Zinc finger protein 484 23.2 48 0.0016 19.0 2.1 17 188-204 11-27 (46)
235 2ytt_A Zinc finger protein 473 23.2 60 0.002 18.6 2.5 17 188-204 11-27 (46)
236 2elp_A Zinc finger protein 406 23.1 36 0.0012 18.5 1.4 18 188-205 8-26 (37)
237 2eoh_A Zinc finger protein 28 23.0 47 0.0016 19.1 2.0 19 188-206 11-29 (46)
238 2em8_A Zinc finger protein 224 22.9 48 0.0016 19.1 2.1 18 188-205 11-28 (46)
239 2yti_A Zinc finger protein 347 22.8 47 0.0016 19.0 2.0 17 188-204 11-27 (46)
240 1bbo_A Human enhancer-binding 22.8 46 0.0016 19.9 2.0 18 188-205 28-45 (57)
241 1ptq_A Protein kinase C delta 22.7 49 0.0017 20.5 2.1 10 105-114 26-35 (50)
242 3u50_C Telomerase-associated p 22.6 30 0.001 28.2 1.3 11 79-89 43-53 (172)
243 2emh_A Zinc finger protein 484 22.5 51 0.0017 18.9 2.1 18 188-205 11-28 (46)
244 3h0g_L DNA-directed RNA polyme 22.4 45 0.0015 23.0 2.0 9 106-114 37-45 (63)
245 3u6p_A Formamidopyrimidine-DNA 22.3 38 0.0013 29.2 2.1 19 78-96 245-271 (273)
246 1njq_A Superman protein; zinc- 22.2 36 0.0012 18.9 1.3 18 188-205 5-22 (39)
247 1v5n_A PDI-like hypothetical p 21.9 43 0.0015 24.1 1.9 9 123-131 60-68 (89)
248 2emx_A Zinc finger protein 268 21.9 47 0.0016 18.9 1.8 19 188-206 9-27 (44)
249 2eon_A ZFP-95, zinc finger pro 21.9 40 0.0014 19.5 1.5 17 188-204 11-27 (46)
250 2emj_A Zinc finger protein 28 21.7 50 0.0017 19.0 1.9 19 188-206 11-29 (46)
251 2xzf_A Formamidopyrimidine-DNA 21.6 41 0.0014 28.9 2.1 20 78-97 242-269 (271)
252 1k3x_A Endonuclease VIII; hydr 21.5 41 0.0014 28.8 2.1 20 78-97 234-261 (262)
253 1pft_A TFIIB, PFTFIIBN; N-term 21.5 66 0.0023 20.2 2.6 7 80-86 7-13 (50)
254 2epv_A Zinc finger protein 268 21.5 32 0.0011 19.8 1.0 18 188-205 11-28 (44)
255 2em6_A Zinc finger protein 224 21.4 54 0.0018 18.9 2.1 17 188-204 11-27 (46)
256 2eow_A Zinc finger protein 347 21.4 46 0.0016 19.0 1.7 21 188-208 11-31 (46)
257 1x64_A Alpha-actinin-2 associa 21.4 44 0.0015 23.1 1.9 41 148-201 23-63 (89)
258 2eq2_A Zinc finger protein 347 21.3 45 0.0015 19.1 1.7 17 188-204 11-27 (46)
259 2epz_A Zinc finger protein 28 21.3 54 0.0018 18.8 2.0 17 188-204 11-27 (46)
260 2ene_A Zinc finger protein 347 21.1 38 0.0013 19.5 1.3 17 188-204 11-27 (46)
261 1k82_A Formamidopyrimidine-DNA 21.1 42 0.0014 28.8 2.1 20 78-97 240-267 (268)
262 2ytq_A Zinc finger protein 268 21.0 55 0.0019 18.8 2.0 17 188-204 11-27 (46)
263 1ee8_A MUTM (FPG) protein; bet 21.0 43 0.0015 28.8 2.1 20 78-97 235-262 (266)
264 2ep1_A Zinc finger protein 484 20.9 56 0.0019 18.7 2.0 17 188-204 11-27 (46)
265 2eq1_A Zinc finger protein 347 20.7 56 0.0019 18.7 2.0 17 188-204 11-27 (46)
266 2em4_A Zinc finger protein 28 20.7 49 0.0017 19.1 1.7 19 188-206 11-29 (46)
267 2eq3_A Zinc finger protein 347 20.6 41 0.0014 19.3 1.4 17 188-204 11-27 (46)
268 2en2_A B-cell lymphoma 6 prote 20.6 46 0.0016 18.6 1.6 18 188-205 10-27 (42)
269 1a7i_A QCRP2 (LIM1); LIM domai 20.5 20 0.00068 24.4 -0.1 40 150-201 7-46 (81)
270 2em3_A Zinc finger protein 28 20.4 48 0.0016 19.0 1.7 20 188-207 11-30 (46)
271 2em5_A ZFP-95, zinc finger pro 20.4 40 0.0014 19.5 1.3 18 188-205 11-28 (46)
272 2eq4_A Zinc finger protein 224 20.3 58 0.002 18.6 2.0 18 188-205 11-28 (46)
273 2eoj_A Zinc finger protein 268 20.3 41 0.0014 19.0 1.3 17 188-204 11-27 (44)
274 2yu8_A Zinc finger protein 347 20.3 50 0.0017 18.9 1.7 19 188-206 11-29 (46)
275 3p8b_A DNA-directed RNA polyme 20.3 45 0.0015 24.1 1.7 22 65-87 23-44 (81)
276 2dmi_A Teashirt homolog 3; zin 20.2 68 0.0023 22.2 2.7 32 188-219 79-110 (115)
277 2enh_A Zinc finger protein 28 20.1 53 0.0018 18.9 1.8 17 188-204 11-27 (46)
278 2yso_A ZFP-95, zinc finger pro 20.1 51 0.0017 18.9 1.7 18 188-205 11-28 (46)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=3.2e-57 Score=369.04 Aligned_cols=139 Identities=42% Similarity=1.050 Sum_probs=131.7
Q ss_pred CCccccccCCCCccCccccccccceecCCCCCcccChhhHHhhhcCCCCCCCcccccccccCeeEeCCCCccccccccCC
Q 027385 3 GSANERITFGKMGYGCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCT 82 (224)
Q Consensus 3 ~~~~~~~~~~~~~~gC~HY~r~c~l~~pCC~~~y~Cr~CHde~~~~~~~~~~~H~~~r~~~~~vlC~~C~~~q~~~~~C~ 82 (224)
++....+|++++++||+||+|+|+|+||||++|||||+||||++ +|+++|+++++|+||+|+++|++++.|+
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~--------dH~l~r~~~~~vlCg~C~~~q~~~~~C~ 75 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNE--------DHQLDRFKVKEVQCINCEKLQHAQQTCE 75 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTS--------SSCCCSSSCCCEEESSSCCEECSCSBCS
T ss_pred CCCCcccccccCcCCCcccCCCeeEECCCCCCccchhhhhcccc--------ccccchhccceeeecccCccccccCcCC
Confidence 45556789999999999999999999999999999999999974 6999999999999999999999999999
Q ss_pred CCCCCcceeecCccccccCCCCcCeeccCCCCcceeCCccceeecCccCccccccccCcceeecCCCCC
Q 027385 83 NCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHH 151 (224)
Q Consensus 83 ~Cg~~f~~Y~C~~C~l~dd~~~k~~yHC~~CgiCR~G~~~~~fHC~~C~~C~s~~l~~~H~C~e~~~~~ 151 (224)
+||+.||+|||+|||||| ++|+||||++|||||||+++|||||++||+|||++|+++|+|+|+++++
T Consensus 76 ~Cg~~f~~Y~C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 76 DCSTLFGEYYCSICHLFD--KDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SSCCBSCSEECSSSCCEE--CSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred CCCccceeeEeceeeccc--CCCceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 999999999999999997 4699999999999999999999999999999999999999999999864
No 2
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.48 E-value=1.6e-14 Score=96.86 Aligned_cols=52 Identities=42% Similarity=0.875 Sum_probs=45.9
Q ss_pred CCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
+.+..||||++.+.++.+.++.++|||.||..|+.+|++. +.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 4567899999998777778899999999999999999985 589999998874
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.4e-13 Score=97.74 Aligned_cols=56 Identities=23% Similarity=0.671 Sum_probs=47.0
Q ss_pred cCCCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccccch
Q 027385 146 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS 203 (224)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~ 203 (224)
+...+..|+||++.+. ....+.+|+|||.||..|+.+|++. +.+||+||+.+..+.
T Consensus 11 ~~~~~~~C~IC~~~~~-~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFK-PRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCSCBCSSSCCBCC-SSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCC
T ss_pred cCCCCCCCcCCCcccC-CCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccccc
Confidence 4456778999999954 4567788999999999999999985 679999999998753
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.40 E-value=1.2e-13 Score=92.62 Aligned_cols=49 Identities=29% Similarity=0.729 Sum_probs=41.4
Q ss_pred CCCCccchhhcccCCCceeEec-cCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~Lp-CGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
+..|+||++.+.+ .+.+..|+ |||.||..|+.+|++ .+.+||+||+.+.
T Consensus 5 ~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELED-GEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCT-TSCCEECSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred CCcCccCCccccC-CCceEECCCCCCcccHHHHHHHHH-cCCcCcCCCCEeE
Confidence 5689999999654 45677776 999999999999998 4789999998764
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=2.3e-13 Score=95.40 Aligned_cols=53 Identities=23% Similarity=0.532 Sum_probs=44.7
Q ss_pred CCCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 147 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
...+..|+||++.+. ....++.|+|||.||..|+.+|+.. +.+||+||+.+..
T Consensus 11 ~~~~~~C~IC~~~~~-~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILE-EGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCC-SSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCcccc-CCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 455678999999854 4567888999999999999999985 6799999998864
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.9e-13 Score=98.92 Aligned_cols=50 Identities=20% Similarity=0.430 Sum_probs=39.4
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
+..||||++++..+...+..++|||.||..||++||+. +.+||+||+.+.
T Consensus 26 ~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~ 75 (81)
T 2ecl_A 26 MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWV 75 (81)
T ss_dssp TSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCC
T ss_pred hccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcc
Confidence 56788888886554333444469999999999999984 679999999875
No 7
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.2e-13 Score=98.70 Aligned_cols=53 Identities=26% Similarity=0.548 Sum_probs=44.7
Q ss_pred CCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccccc
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (224)
..+..|+||++.+. ..+.++.|||||.||..|+.+|++. +.+||+||+.+...
T Consensus 21 ~~~~~C~IC~~~~~-~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFE-SRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECC-BTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccC-CCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 34567999999954 4567889999999999999999984 68999999988653
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.34 E-value=6.4e-13 Score=101.63 Aligned_cols=56 Identities=25% Similarity=0.437 Sum_probs=43.7
Q ss_pred CCCCCCCccchhhcccCC--------------CceeEeccCCccCHHHHHHHHhc----CcCCCCCCccccccc
Q 027385 147 NSMHHHCPICYEYLFDSL--------------RNTTVMKCGHTMHCECYHEMIKR----DKYCCPICSKSVIDM 202 (224)
Q Consensus 147 ~~~~~~CpICle~lf~s~--------------~~v~~LpCGH~~H~~C~~~~l~~----~~~~CPiCrksi~dm 202 (224)
...+..||||++.|.+.. ..++.++|||.||..||.+|+.. .+.+||+||+.+...
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 345678999999975422 23457899999999999999952 467999999988753
No 9
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.33 E-value=5.3e-13 Score=99.28 Aligned_cols=52 Identities=23% Similarity=0.497 Sum_probs=43.7
Q ss_pred CCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
..+..|+||++.+.. .+.++.|||||.||..|+.+|++ .+.+||+||+.+..
T Consensus 38 ~~~~~C~IC~~~~~~-~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVK-GDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCT-TCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcC-CCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCCC
Confidence 345679999998544 56788899999999999999998 57899999998753
No 10
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.31 E-value=7.6e-13 Score=94.79 Aligned_cols=52 Identities=25% Similarity=0.597 Sum_probs=44.1
Q ss_pred CCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
..+..|+||++.+. ....+..|+|||.||..|+.+|++ .+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~-~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYA-LGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCC-TTSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCcccc-CCCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCC
Confidence 34568999999854 456778899999999999999998 46899999999875
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.29 E-value=1.1e-12 Score=91.92 Aligned_cols=53 Identities=28% Similarity=0.636 Sum_probs=43.9
Q ss_pred CCCCCCccchhhcccC---CCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
..+..||||++.+.+. .+.++.++|||.||..|+.+|++. +.+||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 4467899999997653 344578999999999999999984 6899999999873
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.1e-12 Score=91.06 Aligned_cols=52 Identities=29% Similarity=0.646 Sum_probs=42.8
Q ss_pred CCCCCCccchhhcccC---CCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
.....||||++.+.+. ...+..++|||.||..|+.+|++. +.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 3456899999997653 234578999999999999999984 789999999875
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.28 E-value=1.7e-12 Score=88.91 Aligned_cols=51 Identities=27% Similarity=0.663 Sum_probs=42.9
Q ss_pred CCCCccchhhcccC---CCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 150 HHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 150 ~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
+..||||++.+.+. .+.+..++|||.||..|+.+|++. +.+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 56899999997652 345578999999999999999985 7899999999874
No 14
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=3.6e-12 Score=88.50 Aligned_cols=52 Identities=25% Similarity=0.515 Sum_probs=42.4
Q ss_pred CCCCccchh-hcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 150 HHHCPICYE-YLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 150 ~~~CpICle-~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
+..||||++ .+.+....+..++|||+|+..|+.+|+..+..+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 467999999 6555444446789999999999999977567889999999863
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.24 E-value=3.4e-12 Score=88.97 Aligned_cols=50 Identities=26% Similarity=0.641 Sum_probs=42.5
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (224)
.+..||||++.+. +++..++|||.||..|+.+|++. +.+||+||+.+..+
T Consensus 4 ~~~~C~IC~~~~~---~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPS---NYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCC---SCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCCE
T ss_pred CCCCCeeCCcccc---CCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHhh
Confidence 4568999999853 35688999999999999999984 68999999998754
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=8.7e-12 Score=90.52 Aligned_cols=53 Identities=28% Similarity=0.665 Sum_probs=43.9
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcC--cCCCCCCcccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD--KYCCPICSKSVID 201 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~--~~~CPiCrksi~d 201 (224)
....||||++.+.++....+.|+|||.||..|+.+|++.. ..+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3567999999976655457889999999999999999853 4899999998753
No 17
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.20 E-value=1.2e-12 Score=95.88 Aligned_cols=60 Identities=23% Similarity=0.542 Sum_probs=46.8
Q ss_pred CCCCCccchhhcccCCCceeEe--ccCCccCHHHHHHHHhcCcCCCCCCccccccchHHHHHHH
Q 027385 149 MHHHCPICYEYLFDSLRNTTVM--KCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRID 210 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~L--pCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~~~~~~lD 210 (224)
.+..||||+|.+.. .++.++ +|||.|+..|+..++....++||+||+.+......|+++|
T Consensus 10 ~~~~CpICle~~~~--~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~~ 71 (78)
T 1e4u_A 10 DPVECPLCMEPLEI--DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLS 71 (78)
T ss_dssp CCCBCTTTCCBCCT--TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSCC
T ss_pred cCCcCCccCccCcc--ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccCC
Confidence 45689999997532 334455 4999999999999986567899999999998776665443
No 18
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.19 E-value=1.3e-11 Score=95.23 Aligned_cols=49 Identities=18% Similarity=0.412 Sum_probs=36.2
Q ss_pred CCCCccchhhcccC---CCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccc
Q 027385 150 HHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199 (224)
Q Consensus 150 ~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi 199 (224)
+..|+||++++.++ ...++.|+|||.||..||.+||. .+.+||+||+.+
T Consensus 48 ~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 48 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREW 99 (106)
T ss_dssp TSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBC
T ss_pred hCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcc
Confidence 34555555543221 22467789999999999999998 478999999985
No 19
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.9e-12 Score=90.85 Aligned_cols=51 Identities=22% Similarity=0.562 Sum_probs=42.8
Q ss_pred CCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccccchH
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 204 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~~ 204 (224)
.....||||++.+.+ +.++|||.||..|+.+|+. .+.+||+||+.+.....
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCCc
Confidence 345689999998533 7899999999999999998 57899999999886543
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.4e-11 Score=87.12 Aligned_cols=49 Identities=16% Similarity=0.422 Sum_probs=40.9
Q ss_pred CCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
..+..||||++.+. ..+.|+|||.||..|+.+|+. .+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCV----HPVSLPCKHVFCYLCVKGASW-LGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCS----SEEEETTTEEEEHHHHHHCTT-CSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccC----CCEEccCCCHHHHHHHHHHHH-CCCcCcCcCchhCH
Confidence 34567999999853 346789999999999999998 46899999999873
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.3e-11 Score=87.90 Aligned_cols=61 Identities=21% Similarity=0.422 Sum_probs=44.9
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccccchHHHHHHHHHHh
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEMN 214 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~~~~~~lD~~i~ 214 (224)
....||||++.+.+ .++++|||+||..|+.+|++ ...+||+||+.+...-...+.|.+.+.
T Consensus 14 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 14 IPFRCFICRQAFQN----PVVTKCRHYFCESCALEHFR-ATPRCYICDQPTGGIFNPAKELMAKLQ 74 (81)
T ss_dssp CCSBCSSSCSBCCS----EEECTTSCEEEHHHHHHHHH-HCSBCSSSCCBCCSCCEECHHHHHHHS
T ss_pred CCCCCcCCCchhcC----eeEccCCCHhHHHHHHHHHH-CCCcCCCcCccccccCCcHHHHHHHHH
Confidence 45679999998533 34689999999999999998 478999999998642222234444443
No 22
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=99.14 E-value=4.6e-12 Score=93.63 Aligned_cols=33 Identities=21% Similarity=0.473 Sum_probs=0.4
Q ss_pred CCCCccccccchHHHHHHHHHHhcCCCCcCccC
Q 027385 192 CPICSKSVIDMSRTWKRIDEEMNSSIFFPSFFR 224 (224)
Q Consensus 192 CPiCrksi~dm~~~~~~lD~~i~~~pmp~~y~~ 224 (224)
||+|+||+.||+.+|++||++||++|||++|+.
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~ 33 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQN 33 (79)
T ss_dssp --------------------------------C
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhC
Confidence 799999999999999999999999999999963
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.5e-11 Score=85.92 Aligned_cols=49 Identities=33% Similarity=0.578 Sum_probs=40.9
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
.+..||||++.+.+ ++..++|||.||..|+.+|++. +.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence 35689999998644 4555699999999999999984 7899999998864
No 24
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.11 E-value=2.9e-11 Score=93.17 Aligned_cols=53 Identities=28% Similarity=0.648 Sum_probs=43.8
Q ss_pred CCCCCCccchhhcccC---CCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
+.+..||||++.+.+. .+.++.++|||+||..|+.+|++ .+.+||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT-TCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH-hCCCCCCCCCcCcc
Confidence 3456899999996553 34558899999999999999998 46799999999873
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.10 E-value=7.7e-11 Score=93.59 Aligned_cols=46 Identities=35% Similarity=0.865 Sum_probs=39.6
Q ss_pred CCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
..||||++.+.+ .+.|||||+||..|+..|+. .+.+||+||+.+..
T Consensus 54 ~~C~iC~~~~~~----~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE----AVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS----EEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCC
T ss_pred CCCcccCcccCC----ceECCCCCCccHHHHHHHHH-cCCcCCCCCCcCCC
Confidence 469999998543 46789999999999999998 47899999999974
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3.8e-11 Score=83.50 Aligned_cols=48 Identities=21% Similarity=0.556 Sum_probs=39.7
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
+..||||++.+.+ ++ .++|||.||..|+.+|+...+.+||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~---p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLVLCS---PK-QTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCEESS---CC-CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCCChHhcC---ee-ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 4579999998543 33 389999999999999996567899999998864
No 27
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=6e-11 Score=83.48 Aligned_cols=49 Identities=29% Similarity=0.735 Sum_probs=40.0
Q ss_pred CCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhc--CcCCCCCCccccc
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPICSKSVI 200 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~--~~~~CPiCrksi~ 200 (224)
..+..||||++.+. ..+.|+|||.||..|+.+|++. ...+||+||+.+.
T Consensus 18 ~~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBCS----SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcccC----CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 34568999999854 3556799999999999999962 4679999999875
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.07 E-value=1.4e-10 Score=82.85 Aligned_cols=48 Identities=19% Similarity=0.462 Sum_probs=40.5
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
.+..||||++.|.+ .+.++|||+|++.|+.+|+..++.+||+||+.+.
T Consensus 7 ~~~~C~IC~~~~~~----Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISLELMKD----PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTSCCCSS----EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred ccCCCCCccccccC----CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 45689999997533 3557999999999999999855789999999985
No 29
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=8.3e-11 Score=86.52 Aligned_cols=51 Identities=27% Similarity=0.550 Sum_probs=40.7
Q ss_pred CCCCCCccchhhcccCCCceeEeccC-----CccCHHHHHHHHhcC-cCCCCCCccccc
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCG-----HTMHCECYHEMIKRD-KYCCPICSKSVI 200 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCG-----H~~H~~C~~~~l~~~-~~~CPiCrksi~ 200 (224)
+.+..|+||++++. ..+++ ++||+ |.||..||++||..+ +.+|||||..+.
T Consensus 13 ~~~~~C~IC~~~~~-~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGD-DESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCC-SSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCcccc-CCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 44678999999844 34444 68996 999999999999853 369999999885
No 30
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.05 E-value=4.2e-11 Score=85.43 Aligned_cols=51 Identities=24% Similarity=0.594 Sum_probs=40.4
Q ss_pred CCCCCccchhhcccCCCceeEec-cCCccCHHHHHHHHhcC-cCCCCCCccccccch
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKRD-KYCCPICSKSVIDMS 203 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~Lp-CGH~~H~~C~~~~l~~~-~~~CPiCrksi~dm~ 203 (224)
.+..||||++.+.+ .+.|+ |||+||..|+.+|++.. ..+||+||+.+....
T Consensus 14 ~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 14 DELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGGSCSSSCCCCTT----CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCcCCChHHhC----CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 35679999998543 34588 99999999999999743 369999999876543
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.04 E-value=7.5e-11 Score=88.96 Aligned_cols=48 Identities=21% Similarity=0.483 Sum_probs=40.4
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
+..||||++.+. +++..++|||.||..|+.+|+.....+||+||+++.
T Consensus 22 ~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 457999999854 355559999999999999999864479999999986
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.02 E-value=1.3e-10 Score=90.32 Aligned_cols=62 Identities=18% Similarity=0.502 Sum_probs=46.2
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc--chHHHHHHHHHHhc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID--MSRTWKRIDEEMNS 215 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d--m~~~~~~lD~~i~~ 215 (224)
+..||||++.+.+ .+.++|||+|+..|+..|+.....+||+||+.+.. .-.....|+.+|+.
T Consensus 52 ~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~ 115 (124)
T 3fl2_A 52 TFQCICCQELVFR----PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQ 115 (124)
T ss_dssp HTBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHH
T ss_pred CCCCCcCChHHcC----cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHH
Confidence 3579999998543 45679999999999999998666799999999964 11123455555543
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2.2e-10 Score=78.81 Aligned_cols=43 Identities=28% Similarity=0.807 Sum_probs=35.3
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhc--CcCCCCCC
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPIC 195 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~--~~~~CPiC 195 (224)
.+..||||++.+.+ .++|+|||.||..|+.+|++. ...+||+|
T Consensus 19 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQK----PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSS----CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCC----eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35679999998543 456799999999999999974 46789998
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.00 E-value=1.7e-10 Score=86.24 Aligned_cols=48 Identities=27% Similarity=0.676 Sum_probs=39.9
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
+..||||++.+.+ ++..++|||.||..|+..|+. .+.+||+||+.+..
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence 4579999998543 455559999999999999998 46899999998873
No 35
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.99 E-value=5.1e-11 Score=93.81 Aligned_cols=50 Identities=22% Similarity=0.555 Sum_probs=0.9
Q ss_pred CCCCCccchhhcccC--------------CCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccc
Q 027385 149 MHHHCPICYEYLFDS--------------LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199 (224)
Q Consensus 149 ~~~~CpICle~lf~s--------------~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi 199 (224)
.+.+|+||++.|.+. ...+..++|||.||..|+.+||+. +.+||+||+.+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW 110 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCee
Confidence 356799999886431 113344699999999999999984 78999999875
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.98 E-value=3.7e-10 Score=85.74 Aligned_cols=49 Identities=31% Similarity=0.709 Sum_probs=40.9
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
.+..||||++.+.+ ++..++|||+||..|+.+|+.. +.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 35679999998543 5555699999999999999984 6899999999874
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.98 E-value=9.6e-11 Score=86.21 Aligned_cols=48 Identities=27% Similarity=0.670 Sum_probs=38.8
Q ss_pred CCCCCccchhhcccCCCceeEec-cCCccCHHHHHHHHhc-CcCCCCCCccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKR-DKYCCPICSKSVI 200 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~Lp-CGH~~H~~C~~~~l~~-~~~~CPiCrksi~ 200 (224)
.+..||||++.|.+ .+.|+ |||+|+..|+.+|+.. ...+||+||+.+.
T Consensus 12 ~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSS----CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcC----ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 35679999997543 35678 9999999999999964 3479999999973
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.98 E-value=3e-10 Score=92.36 Aligned_cols=48 Identities=27% Similarity=0.713 Sum_probs=40.6
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
+..||||++.+.+ ++..++|||+||..|+..|+...+.+||+||+.+.
T Consensus 54 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3479999998543 56666999999999999999865789999999985
No 39
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.98 E-value=2e-10 Score=88.20 Aligned_cols=65 Identities=23% Similarity=0.394 Sum_probs=49.2
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc--chHHHHHHHHHHhcCCC
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID--MSRTWKRIDEEMNSSIF 218 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d--m~~~~~~lD~~i~~~pm 218 (224)
+..||||++.+.+ .+.++|||.|+..|+.+|+.....+||+||+.+.. +....+.+.++|...++
T Consensus 23 ~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v 89 (116)
T 1rmd_A 23 SISCQICEHILAD----PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMV 89 (116)
T ss_dssp HTBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEE
T ss_pred CCCCCCCCcHhcC----cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcC
Confidence 4579999998533 34489999999999999998657899999999874 22234566666665543
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3e-10 Score=76.31 Aligned_cols=43 Identities=28% Similarity=0.900 Sum_probs=35.1
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhc--CcCCCCCC
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPIC 195 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~--~~~~CPiC 195 (224)
.+..||||++.+.+ .+.|+|||.||..|+.+|+.. ...+||+|
T Consensus 14 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE----PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS----CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc----cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 35679999998643 345899999999999999653 57899998
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.97 E-value=3.5e-10 Score=87.06 Aligned_cols=53 Identities=28% Similarity=0.636 Sum_probs=43.5
Q ss_pred CCCCCCccchhhcccC---CCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
.....||||++.+.+. ...++.++|||.||..|+++|++. +.+||+||+++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 4567899999986542 334578899999999999999984 6799999999864
No 42
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.96 E-value=5e-10 Score=80.18 Aligned_cols=48 Identities=27% Similarity=0.611 Sum_probs=39.8
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcC-----cCCCCCCccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-----KYCCPICSKSVI 200 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~-----~~~CPiCrksi~ 200 (224)
.+..||||++.+.+ .+.++|||.||..|+.+|+... ..+||+||+.+.
T Consensus 18 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELLKE----PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCCSS----CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChhhCc----ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 35689999998533 3478999999999999999852 679999999886
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.95 E-value=2.6e-10 Score=88.19 Aligned_cols=64 Identities=22% Similarity=0.423 Sum_probs=48.2
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccccchH-HHHHHHHHHhcCC
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR-TWKRIDEEMNSSI 217 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~~-~~~~lD~~i~~~p 217 (224)
+..||||++.+.+ .+.++|||+|+..|+.+|+..+..+||+||+.+..... .-..+.++|.+.+
T Consensus 18 ~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 18 KYECPICLMALRE----AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp GGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred CCCCCcCChhhcC----eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 4579999998543 35579999999999999998655699999999875321 2245666666654
No 44
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.94 E-value=1.1e-10 Score=83.25 Aligned_cols=49 Identities=33% Similarity=0.685 Sum_probs=39.8
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcC------cCCCCCCcccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD------KYCCPICSKSVID 201 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~------~~~CPiCrksi~d 201 (224)
.+..||||++.+.+ .+.|+|||.|+..|+.+|++.. ..+||+||+.+..
T Consensus 11 ~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTE----PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSS----CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCC----eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 35679999998533 3458999999999999999742 6799999999863
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.92 E-value=1.7e-10 Score=88.47 Aligned_cols=47 Identities=30% Similarity=0.902 Sum_probs=40.0
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
+..||||++.+.+ .+.|+|||+|+..|+..|+..+..+||+||+.+.
T Consensus 15 ~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVE----PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSS----CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCc----eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 4579999998643 4567999999999999999766789999999985
No 46
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=4.9e-10 Score=80.21 Aligned_cols=49 Identities=31% Similarity=0.706 Sum_probs=40.2
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhc-----CcCCCCCCcccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-----DKYCCPICSKSVID 201 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~-----~~~~CPiCrksi~d 201 (224)
....||||++.+.+ .+.|+|||.||..|+.+|+.. ...+||+||+.+..
T Consensus 18 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQ----PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSS----CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCC----ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 35689999998533 345799999999999999974 26899999998873
No 47
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=1.5e-09 Score=82.00 Aligned_cols=47 Identities=26% Similarity=0.712 Sum_probs=38.1
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcC--cCCCCCCccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD--KYCCPICSKSVI 200 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~--~~~CPiCrksi~ 200 (224)
...||||++.+.+ .+.++|||.|+..|+.+|+... ..+||+||+.+.
T Consensus 21 ~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKE----PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSS----CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhcC----eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 4579999997532 3448999999999999999843 258999999876
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.81 E-value=2e-09 Score=87.20 Aligned_cols=48 Identities=21% Similarity=0.629 Sum_probs=40.2
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
...||||++.+.+ .+.++|||+|+..|+.+|+.....+||+||+.+..
T Consensus 78 ~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVYQ----PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChhhcC----CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 4579999997533 34589999999999999998656799999999874
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.74 E-value=2.5e-09 Score=74.80 Aligned_cols=52 Identities=23% Similarity=0.472 Sum_probs=41.1
Q ss_pred cCCCCCCCccchhhcccCCCceeEe--ccCCc-cCHHHHHHHHhcCcCCCCCCccccccc
Q 027385 146 ENSMHHHCPICYEYLFDSLRNTTVM--KCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 202 (224)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~L--pCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (224)
+...+..|+||++... .+.++ ||||. |-..|+..|++ .+.+||+||+.|.+.
T Consensus 4 ~~~~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 4 PLNAIEPCVICQGRPK----NGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQMI 58 (64)
T ss_dssp -CGGGSCCTTTSSSCS----CEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCCEE
T ss_pred CCCCcCCCCcCCCCCC----CEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchhce
Confidence 3456778999999732 34455 99999 78999999997 467999999998764
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.70 E-value=3.9e-09 Score=73.59 Aligned_cols=51 Identities=24% Similarity=0.559 Sum_probs=40.4
Q ss_pred CCCCCCccchhhcccCCCceeEe--ccCCc-cCHHHHHHHHhcCcCCCCCCccccccch
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVM--KCGHT-MHCECYHEMIKRDKYCCPICSKSVIDMS 203 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~L--pCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm~ 203 (224)
.....|+||++...+ ..++ ||||. |...|+..|.+ .+.+||+||+.|.+.-
T Consensus 5 ~~~~~C~IC~~~~~~----~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~~i 58 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD----GNIIHGRTGHLVTCFHCARRLKK-AGASCPICKKEIQLVI 58 (63)
T ss_dssp GGGSBCTTTSSSBSC----EEEEETTEEEEEECHHHHHHHHH-TTCBCTTTCCBCCEEE
T ss_pred CcCCCCcccCCcCCC----eEEEecCCCCHhHHHHHHHHHHH-hCCcCCCcCchhhceE
Confidence 446789999997432 3344 99998 99999999987 4689999999997643
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.65 E-value=3.9e-09 Score=84.77 Aligned_cols=47 Identities=19% Similarity=0.446 Sum_probs=38.9
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi 199 (224)
.+..||||++.|.+ + +.++|||.|+..|+.+|++....+||+||+.+
T Consensus 30 ~~~~C~IC~~~~~~---p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRR---P-FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSS---E-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhhcC---c-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 34579999998644 3 45899999999999999986566999999964
No 52
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.64 E-value=9.2e-09 Score=83.73 Aligned_cols=64 Identities=22% Similarity=0.419 Sum_probs=47.1
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccccchH-HHHHHHHHHhcCC
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR-TWKRIDEEMNSSI 217 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~~-~~~~lD~~i~~~p 217 (224)
+..||||++.|.+ + +.++|||+|.+.|+.+|++.+..+||+||+.+..-.. .-..+.++|.+.+
T Consensus 18 ~~~C~IC~~~~~~---p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 18 KYECPICLMALRE---A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (170)
T ss_dssp GGBCTTTCSBCSS---E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred CCCCCCCChhhcC---c-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence 4579999998643 3 4589999999999999998655699999999875221 1134555665544
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.64 E-value=4.5e-09 Score=71.33 Aligned_cols=45 Identities=22% Similarity=0.450 Sum_probs=36.6
Q ss_pred CCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
..+..||||++.+.+ .+.|+|||+|+..|+.+| ..+||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC----PKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBC----CSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCC----eEEcCCCCcccHHHHccC----CCCCCcCCcEee
Confidence 445679999998543 467899999999999773 579999999875
No 54
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.63 E-value=4.7e-09 Score=75.10 Aligned_cols=44 Identities=23% Similarity=0.582 Sum_probs=37.2
Q ss_pred CCCCccchhhcccCCCceeEeccCCc-cCHHHHHHHHhcCcCCCCCCccccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 202 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (224)
+..|+||++.+. .++.|||||. |...|+..| .+||+||+.+...
T Consensus 24 ~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSBC----CEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCC----CEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccCc
Confidence 467999999843 4677899999 999999887 6899999998754
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=9.9e-09 Score=79.08 Aligned_cols=45 Identities=22% Similarity=0.552 Sum_probs=37.1
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
+..||||++.+.+ ++...+|||+|+..|+..|+. .+||+||+.+.
T Consensus 22 ~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 5689999998533 444449999999999999985 78999999885
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.53 E-value=5.2e-08 Score=90.49 Aligned_cols=49 Identities=24% Similarity=0.608 Sum_probs=41.6
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
....|+||++.+ ..++.+||||.||..|+.+|+.....+||+||+.+..
T Consensus 331 ~~~~C~ICle~~----~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSB----CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCC----CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 346899999985 2467899999999999999997457899999999875
No 57
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=4.6e-08 Score=71.12 Aligned_cols=48 Identities=25% Similarity=0.585 Sum_probs=37.9
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcC-cCCCCCCccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-KYCCPICSKSVI 200 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~-~~~CPiCrksi~ 200 (224)
..+|+||.+.+.. ...-..|||.||..||..||+++ +.+||+|++...
T Consensus 15 i~~C~IC~~~i~~---g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSS---SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHccc---CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4689999998643 23444999999999999999853 278999997765
No 58
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.46 E-value=9.2e-08 Score=70.30 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=40.0
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
.+..||||++.|.+ .++++|||+|-+.||.+|+. ++.+||+|++.+.
T Consensus 13 ~~~~CpI~~~~m~d----PV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD----PVRLPSGTVMDRSIILRHLL-NSPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHH-HCSBCTTTCCBCC
T ss_pred hheECcccCchhcC----CeECCCCCEECHHHHHHHHh-cCCCCCCCcCCCC
Confidence 35689999998543 45688999999999999998 4789999999886
No 59
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.44 E-value=1.9e-07 Score=69.13 Aligned_cols=49 Identities=20% Similarity=0.484 Sum_probs=37.3
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhc-------CcCCCCC--Cccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-------DKYCCPI--CSKS 198 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~-------~~~~CPi--Crks 198 (224)
....||||++++ .....+..++|||.|...|+.+|++. ...+||. |+..
T Consensus 4 ~~~~C~IC~~~~-~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEY-PVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCC-BGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCccc-ccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456799999984 33333333489999999999999873 1368999 9998
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.44 E-value=2.5e-07 Score=79.09 Aligned_cols=73 Identities=12% Similarity=0.139 Sum_probs=52.6
Q ss_pred cCCCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccccch-----HHHHHHHHHHhcCCCCc
Q 027385 146 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS-----RTWKRIDEEMNSSIFFP 220 (224)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~-----~~~~~lD~~i~~~pmp~ 220 (224)
+......||||++.|.+ .+++||||+|.+.||..|+..+..+||+|+.++.... ..=+.+++-++..+++-
T Consensus 204 ~~~~~~~c~i~~~~~~d----Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~ 279 (281)
T 2c2l_A 204 DIPDYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVE 279 (281)
T ss_dssp CCCSTTBCTTTCSBCSS----EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSS
T ss_pred CCCcccCCcCcCCHhcC----CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCC
Confidence 34456789999997543 4568899999999999999865566999999986311 12345566666666665
Q ss_pred Cc
Q 027385 221 SF 222 (224)
Q Consensus 221 ~y 222 (224)
+|
T Consensus 280 ~~ 281 (281)
T 2c2l_A 280 DY 281 (281)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=5.7e-08 Score=69.38 Aligned_cols=44 Identities=23% Similarity=0.557 Sum_probs=35.5
Q ss_pred CCCCccchhhcccCCCceeEeccCCc-cCHHHHHHHHhcCcCCCCCCccccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 202 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (224)
+..|+||++.+. .++.|||||. |...|+.. ..+||+||+.+...
T Consensus 25 ~~~C~IC~~~~~----~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCC----CBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCC----CEEEecCCCHHHHHHHhhC-----CCCCccCCceecCc
Confidence 457999999842 3567899999 99999953 36899999998763
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=8e-08 Score=68.05 Aligned_cols=48 Identities=23% Similarity=0.471 Sum_probs=39.0
Q ss_pred CCCCCCccchhhcccCCCceeEeccCCc-cCHHHHHHHHhcCcCCCCCCccccccchH
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDMSR 204 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm~~ 204 (224)
..+..|+||++.. ..++.|||||. |...|+.. ..+||+||+.|.....
T Consensus 13 ~~~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 13 ENSKDCVVCQNGT----VNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQESFA 61 (68)
T ss_dssp CCSSCCSSSSSSC----CCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCEEC
T ss_pred CCCCCCCCcCcCC----CCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhceEE
Confidence 4467899999973 35788999999 99999973 3699999999987543
No 63
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.40 E-value=1.4e-07 Score=71.58 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=40.0
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
.+..||||++.|.+ .++++|||+|-+.||..|+. ++.+||+|+..+.
T Consensus 28 ~~~~CpI~~~~m~d----PV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDTLMTD----PVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCSBCSS----EEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred HhhCCcCccCcccC----CeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 35689999997543 45678999999999999998 5789999999886
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.38 E-value=1.7e-07 Score=65.18 Aligned_cols=51 Identities=25% Similarity=0.466 Sum_probs=38.8
Q ss_pred cCCCCCCCccchhhcccCCCceeEeccC--C---ccCHHHHHHHHhc-CcCCCCCCccccc
Q 027385 146 ENSMHHHCPICYEYLFDSLRNTTVMKCG--H---TMHCECYHEMIKR-DKYCCPICSKSVI 200 (224)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCG--H---~~H~~C~~~~l~~-~~~~CPiCrksi~ 200 (224)
|......|.||++.. ..+. ++||. + .||..|+.+|+.. ++.+||||+..+.
T Consensus 2 e~~~~~~CrIC~~~~---~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 2 EDEDVPVCWICNEEL---GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TTCSCCEETTTTEEC---SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCEeEEeecCC---CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 455677899999872 2333 58864 4 9999999999975 3689999997653
No 65
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.35 E-value=2.3e-07 Score=70.15 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=39.9
Q ss_pred CCCCCccchhhcccCCCceeEeccC-CccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCG-HTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCG-H~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
.+..||||++.|.+ .++++|| |+|-+.||.+|+.. +.+||+|++.+.
T Consensus 21 ~~~~CpI~~~~m~d----PV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~ 68 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD----PVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLT 68 (98)
T ss_dssp TTTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred HhcCCcCccccccC----CeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCC
Confidence 35689999997543 4568999 99999999999984 789999999886
No 66
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=5.7e-07 Score=67.01 Aligned_cols=47 Identities=32% Similarity=0.563 Sum_probs=36.5
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcC-----cCCCCC--Cccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-----KYCCPI--CSKS 198 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~-----~~~CPi--Crks 198 (224)
.+..||||++.|.+ +|+...|||+|-+.||.+|+... ..+||+ |++.
T Consensus 6 ~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 35679999997533 55433599999999999999753 369999 9865
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.24 E-value=1.3e-07 Score=68.67 Aligned_cols=46 Identities=30% Similarity=0.661 Sum_probs=37.6
Q ss_pred CCCCccchhhcccCCCceeEeccCCc-cCHHHHHHHHhcCcCCCCCCccccccchH
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDMSR 204 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm~~ 204 (224)
+..|+||++.+ ..+..+||||. |-..|+..| .+||+||+.+...-.
T Consensus 18 ~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~ 64 (79)
T 2yho_A 18 AMLCMVCCEEE----INSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHVQH 64 (79)
T ss_dssp HTBCTTTSSSB----CCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEEEE
T ss_pred CCEeEEeCccc----CcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCeEE
Confidence 45799999974 34778999999 999999765 399999999986543
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.21 E-value=3.2e-07 Score=84.35 Aligned_cols=53 Identities=26% Similarity=0.531 Sum_probs=39.9
Q ss_pred CCCCCCccchhhcccCCCce-e---EeccCCccCHHHHHHHHhcCc----------CCCCCCccccc
Q 027385 148 SMHHHCPICYEYLFDSLRNT-T---VMKCGHTMHCECYHEMIKRDK----------YCCPICSKSVI 200 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v-~---~LpCGH~~H~~C~~~~l~~~~----------~~CPiCrksi~ 200 (224)
....+|+||++.+.++.+.. . .++|||.||..|+.+|+++.. .+||+||+.|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 34668999999966522221 1 358999999999999997522 57999999876
No 69
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.04 E-value=5.9e-06 Score=69.18 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=39.2
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
.+..||||++.|.+ .+++||||+|-+.||..|+..+..+||+|+.++.
T Consensus 105 ~~f~CPI~~elm~D----PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 105 DYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HhhcccCccccCCC----CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 45679999998543 4556999999999999999854457999999886
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.89 E-value=4.3e-06 Score=74.08 Aligned_cols=50 Identities=22% Similarity=0.436 Sum_probs=41.3
Q ss_pred CCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhc-CcCCCCC--Cccccc
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-DKYCCPI--CSKSVI 200 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~-~~~~CPi--Crksi~ 200 (224)
..+..||||++.|. +||+.+.|||+|-+.||.+|+.. ...+||+ |++.+.
T Consensus 179 ~~el~CPIcl~~f~---DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYE---APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCS---SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCccc---CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 34567999999853 58887899999999999999974 2468999 999875
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.80 E-value=2.7e-06 Score=77.63 Aligned_cols=44 Identities=25% Similarity=0.680 Sum_probs=37.0
Q ss_pred CCCCccchhhcccCCCceeEeccCCc-cCHHHHHHHHhcCcCCCCCCccccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 202 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (224)
+..||||++.+. .++.|||||. |...|+..| .+||+||+.+...
T Consensus 295 ~~~C~IC~~~~~----~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 295 ERTCKVCMDKEV----SVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKGT 339 (345)
T ss_dssp TCBCTTTSSSBC----CEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCEE
T ss_pred CCCCCccCCcCC----ceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccCe
Confidence 467999999843 4677899999 999999876 6899999998754
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.57 E-value=4.2e-05 Score=58.63 Aligned_cols=50 Identities=22% Similarity=0.440 Sum_probs=41.5
Q ss_pred CCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccccchH
Q 027385 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 204 (224)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~~ 204 (224)
.|++|.-++. ...+.+||+|+|..+|+..|.+.+..+||+|+.+|.+.+.
T Consensus 3 fC~~C~~Pi~---iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIK---VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCS---EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeE---EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 4788887743 3578899999999999999987677899999999987653
No 73
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.55 E-value=3.6e-05 Score=53.33 Aligned_cols=49 Identities=14% Similarity=0.071 Sum_probs=38.9
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
+...|||+++-|.+ +|...++||+|=+.++.+||+. +.+||+.++.+..
T Consensus 2 ~~~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~ 50 (61)
T 2bay_A 2 SHMLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI 50 (61)
T ss_dssp --CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG
T ss_pred CeEEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCCh
Confidence 34679999998653 5544499999999999999984 6789999998863
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.05 E-value=0.0036 Score=54.12 Aligned_cols=47 Identities=26% Similarity=0.615 Sum_probs=35.2
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcC-cCCCCCCcccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-KYCCPICSKSV 199 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~-~~~CPiCrksi 199 (224)
-..|.||.+-+.- ..+--.|+|.||..|+..|+++. +.+||.|+...
T Consensus 180 i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 4568888886542 23333599999999999999753 46999999864
No 75
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=92.76 E-value=0.099 Score=42.06 Aligned_cols=67 Identities=15% Similarity=0.387 Sum_probs=45.1
Q ss_pred ecCCCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHh----------cCcCCCCCCccccc-c----chHHHHHH
Q 027385 145 IENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK----------RDKYCCPICSKSVI-D----MSRTWKRI 209 (224)
Q Consensus 145 ~e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~----------~~~~~CPiCrksi~-d----m~~~~~~l 209 (224)
.+...+..|.||.+. ++-+--=.|--+||..|+..-+. .....||+|+-..+ . .++.++.|
T Consensus 58 d~Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl~~l~~~c~~~~~~~ 133 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTACNSVFENL 133 (142)
T ss_dssp CTTSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTTHHHHHHHHHHHHHH
T ss_pred cCCCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCccHHHHHHHHHHHHHHH
Confidence 456778889999985 22222227889999999996542 35788999995432 2 33466677
Q ss_pred HHHHhc
Q 027385 210 DEEMNS 215 (224)
Q Consensus 210 D~~i~~ 215 (224)
|+.+++
T Consensus 134 ~~~~~~ 139 (142)
T 2lbm_A 134 EQLLQQ 139 (142)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 776554
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.20 E-value=0.062 Score=40.71 Aligned_cols=44 Identities=20% Similarity=0.577 Sum_probs=35.7
Q ss_pred CCCCccchhhcccCCCceeEeccC-CccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCG-HTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCG-H~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
..||-.|+-. + -..+.|. |.+...|+..+|. .+.+||||++.+-
T Consensus 28 ~~nCKsCWf~-~-----k~LV~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFE-N-----KGLVECNNHYLCLNCLTLLLS-VSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSC-C-----SSEEECSSCEEEHHHHHHTCS-SSSEETTTTEECC
T ss_pred cccChhhccc-c-----CCeeeecchhhHHHHHHHHHh-hccCCcccCCcCC
Confidence 4588899854 1 2466885 9999999999997 5789999999986
No 77
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=90.74 E-value=0.058 Score=39.64 Aligned_cols=28 Identities=29% Similarity=0.701 Sum_probs=16.1
Q ss_pred EeCCCCccccccccCCCCCCCcceeecCccccc
Q 027385 67 ICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFY 99 (224)
Q Consensus 67 lC~~C~~~q~~~~~C~~Cg~~f~~Y~C~~C~l~ 99 (224)
.|..|+.++.+ |..||+. .|||+.|+=+
T Consensus 33 fCPeCgq~Le~---lkACGA~--~yFC~~C~~L 60 (81)
T 2jrp_A 33 LCPDCRQPLQV---LKACGAV--DYFCQNGHGL 60 (81)
T ss_dssp ECSSSCSCCCE---EEETTEE--EECCTTTTCC
T ss_pred cCcchhhHHHH---HHhcCCc--CeeeccCCCE
Confidence 55555544333 5555554 7888888644
No 78
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.42 E-value=0.15 Score=37.21 Aligned_cols=34 Identities=15% Similarity=0.322 Sum_probs=25.7
Q ss_pred CCCCCccchhhcccCCCceeE-eccCCccCHHHHHHH
Q 027385 149 MHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEM 184 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~ 184 (224)
.+..|+||++.++. .++.. |.|||.|-..|+..+
T Consensus 2 ee~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHH
Confidence 35679999986443 23433 999999999999983
No 79
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=87.07 E-value=0.27 Score=37.40 Aligned_cols=9 Identities=33% Similarity=0.852 Sum_probs=4.4
Q ss_pred ceeecCccc
Q 027385 89 GEYFCDICK 97 (224)
Q Consensus 89 ~~Y~C~~C~ 97 (224)
+.|||..|+
T Consensus 80 vdYFC~~ch 88 (101)
T 2jne_A 80 VDYFCQHGH 88 (101)
T ss_dssp EEEEETTTT
T ss_pred cchhhccCC
Confidence 345555554
No 80
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=86.40 E-value=0.11 Score=39.09 Aligned_cols=84 Identities=21% Similarity=0.594 Sum_probs=44.5
Q ss_pred CCCcceeCC-ccceeecCccCc-----ccccccc----CcceeecCCCCCCCccchhhcccCCCceeEeccCCccCHHHH
Q 027385 112 DCGICRIGG-RENYFHCKRCGS-----CYSTSLR----NNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECY 181 (224)
Q Consensus 112 ~CgiCR~G~-~~~~fHC~~C~~-----C~s~~l~----~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~ 181 (224)
.|.||..+| .++...|+.|+. |+.+.+. +.=.|.+= ..|.||... .+...-+.--.|.-.||..|+
T Consensus 9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C---~~C~~C~~~-~~~~~ll~Cd~C~~~yH~~Cl 84 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC---KVCQNCKQS-GEDSKMLVCDTCDKGYHTFCL 84 (111)
T ss_dssp CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT---CCCTTTCCC-SCCTTEEECSSSCCEEEGGGS
T ss_pred CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC---CcccccCcc-CCCCCeeECCCCCcHHhHHhc
Confidence 455665555 255667777764 3443322 11111110 146677764 111111222368999999999
Q ss_pred HHHHhc---CcCCCCCCcccc
Q 027385 182 HEMIKR---DKYCCPICSKSV 199 (224)
Q Consensus 182 ~~~l~~---~~~~CPiCrksi 199 (224)
+.-|.. ....||.|....
T Consensus 85 ~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 85 QPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp SSCCSSCCSSCCCCHHHHCCS
T ss_pred CCccccCCCCCcCCcCCcCcC
Confidence 865432 367788886543
No 81
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=85.32 E-value=0.15 Score=38.81 Aligned_cols=75 Identities=25% Similarity=0.518 Sum_probs=41.7
Q ss_pred CccceeecCccCcccccc-c-----------cCcceeecCCCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhc
Q 027385 120 GRENYFHCKRCGSCYSTS-L-----------RNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR 187 (224)
Q Consensus 120 ~~~~~fHC~~C~~C~s~~-l-----------~~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~ 187 (224)
.+++...|..|+.-+-.+ | ..+=.|.+= ..|.||.+.-.+..+-+.--.|...||..|++.-|..
T Consensus 22 ~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~ 98 (112)
T 3v43_A 22 KPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTR 98 (112)
T ss_dssp CCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSS
T ss_pred CchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCcCCCccceEEcCCCCCeeecccCCCCCCC
Confidence 456777888876544221 0 112222221 1577887641111111111268999999999765542
Q ss_pred ---CcCCCCCCcc
Q 027385 188 ---DKYCCPICSK 197 (224)
Q Consensus 188 ---~~~~CPiCrk 197 (224)
....||.|+.
T Consensus 99 ~P~~~W~C~~C~~ 111 (112)
T 3v43_A 99 MPKGMWICQICRP 111 (112)
T ss_dssp CCSSCCCCTTTSC
T ss_pred CCCCCeECCCCCC
Confidence 3678999975
No 82
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=78.76 E-value=0.1 Score=39.86 Aligned_cols=86 Identities=22% Similarity=0.552 Sum_probs=48.0
Q ss_pred CCCcceeCC--------ccceeecCccCc-----cccccc-------cCcceeecCCCCCCCccchhhcccCCCceeEec
Q 027385 112 DCGICRIGG--------RENYFHCKRCGS-----CYSTSL-------RNNHLCIENSMHHHCPICYEYLFDSLRNTTVMK 171 (224)
Q Consensus 112 ~CgiCR~G~--------~~~~fHC~~C~~-----C~s~~l-------~~~H~C~e~~~~~~CpICle~lf~s~~~v~~Lp 171 (224)
.|+||..|+ +++...|+.|+. |+...+ ...=.|.+= ..|.||...- +..+-+.--.
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~~C~~~~-~~~~ll~Cd~ 78 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC---KSCILCGTSE-NDDQLLFCDD 78 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG---CCCTTTTCCT-TTTTEEECSS
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc---CccCcccccC-CCCceEEcCC
Confidence 456665443 467888888875 444321 112223221 1577887642 1111111227
Q ss_pred cCCccCHHHHHHHHhc---CcCCCCCCcccccc
Q 027385 172 CGHTMHCECYHEMIKR---DKYCCPICSKSVID 201 (224)
Q Consensus 172 CGH~~H~~C~~~~l~~---~~~~CPiCrksi~d 201 (224)
|.-.||..|+..=|.. ....||.|...+.+
T Consensus 79 C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 79 CDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp SCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred CCccccccccCCCccCCCCCCeECccccchhhc
Confidence 8899999999854332 36778888765543
No 83
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=78.32 E-value=3.2 Score=30.96 Aligned_cols=56 Identities=20% Similarity=0.434 Sum_probs=42.6
Q ss_pred ecCCCCCCCccchhhcccCCCceeE---eccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 145 IENSMHHHCPICYEYLFDSLRNTTV---MKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 145 ~e~~~~~~CpICle~lf~s~~~v~~---LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
......+.|.||.|++-...+.-.+ .-|+=.+.+.|++--.+..+..||-|+...-
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3445567899999996544333222 3689999999999988888999999997764
No 84
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=77.52 E-value=2.3 Score=31.66 Aligned_cols=69 Identities=25% Similarity=0.687 Sum_probs=35.1
Q ss_pred CeeEeCCCCcccccc--ccCCCCCCCcceeecCccccccC-CCCcCeeccCCCC---cceeCC-ccceeecCccCccccc
Q 027385 64 KQVICSVCDTEQPVA--QVCTNCGVNMGEYFCDICKFYDD-DIEKGQFHCDDCG---ICRIGG-RENYFHCKRCGSCYST 136 (224)
Q Consensus 64 ~~vlC~~C~~~q~~~--~~C~~Cg~~f~~Y~C~~C~l~dd-~~~k~~yHC~~Cg---iCR~G~-~~~~fHC~~C~~C~s~ 136 (224)
...+|..|+...... ..|..|+..|=. .|--... ...+..+.|+.|. +|+.++ .+....|+.|+.-|-.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~----~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~ 81 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHG----MCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHT 81 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECT----TTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEG
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcCh----HHhCCccccccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhH
Confidence 455666676544321 356666654322 1211111 1123456666554 555554 3458889988865444
No 85
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=76.32 E-value=1.2 Score=30.86 Aligned_cols=45 Identities=18% Similarity=0.373 Sum_probs=31.6
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhc---CcCCCCCCcc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR---DKYCCPICSK 197 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~---~~~~CPiCrk 197 (224)
....|.||.+. .+-+.--.|...||..|++..|.. ....||.|+.
T Consensus 11 ~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 11 PGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 34569999753 222222368999999999877653 4678999974
No 86
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=74.42 E-value=0.44 Score=35.90 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=26.7
Q ss_pred CCCccchhhcccCCCcee-EeccCCccCHHHHHHHHhc-------CcCCCCCCcc
Q 027385 151 HHCPICYEYLFDSLRNTT-VMKCGHTMHCECYHEMIKR-------DKYCCPICSK 197 (224)
Q Consensus 151 ~~CpICle~lf~s~~~v~-~LpCGH~~H~~C~~~~l~~-------~~~~CPiCrk 197 (224)
..|+.|.+. .+....++ ---|..++|..|.....+. ..+.||.|+.
T Consensus 60 ~~c~~c~~~-~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 60 GEVDQNEET-QDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CCBCCHHHH-CCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred Ccccccccc-cccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 345555544 22222232 2368999999998654221 2488999974
No 87
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=74.29 E-value=1.1 Score=37.27 Aligned_cols=52 Identities=21% Similarity=0.473 Sum_probs=34.2
Q ss_pred CCCCccchhhcccCCC--ceeE-eccCCccCHHHHHH------HHh----cCcCCCCCCcccccc
Q 027385 150 HHHCPICYEYLFDSLR--NTTV-MKCGHTMHCECYHE------MIK----RDKYCCPICSKSVID 201 (224)
Q Consensus 150 ~~~CpICle~lf~s~~--~v~~-LpCGH~~H~~C~~~------~l~----~~~~~CPiCrksi~d 201 (224)
...||||.....++.. ..+. -.|..+||..|..- .+. ...|.||.|+..-..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 3569999987544322 1333 36889999999843 121 126999999987664
No 88
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=71.61 E-value=0.39 Score=32.61 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=33.0
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHh----cCcCCCCCCccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK----RDKYCCPICSKS 198 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~----~~~~~CPiCrks 198 (224)
....||||.....+...-|.--.|.-+||..|+.--.. ...|.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 34569999987433322233347899999999864322 146899999754
No 89
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=71.44 E-value=3.7 Score=32.27 Aligned_cols=68 Identities=16% Similarity=0.415 Sum_probs=42.4
Q ss_pred ccCccccccccCcceeecCCCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHH----------hcCcCCCCCCccc
Q 027385 129 RCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMI----------KRDKYCCPICSKS 198 (224)
Q Consensus 129 ~C~~C~s~~l~~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l----------~~~~~~CPiCrks 198 (224)
.|..|...-+.+.-.-.+...+..|.||.+. ++-+--=.|-..||..|+...+ ......|++|+-+
T Consensus 36 ~C~~C~~~y~~~~~~~d~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 36 ICKNCFKYYMSDDISRDSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp EEHHHHHHHHHSCCCBCTTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred eCHhHHhhhhccccccCCCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4444444333333444566777889999975 2211112678999999999652 2356899999765
Q ss_pred cc
Q 027385 199 VI 200 (224)
Q Consensus 199 i~ 200 (224)
-+
T Consensus 112 pl 113 (129)
T 3ql9_A 112 PL 113 (129)
T ss_dssp GG
T ss_pred HH
Confidence 44
No 90
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=67.68 E-value=1.4 Score=25.92 Aligned_cols=30 Identities=17% Similarity=0.536 Sum_probs=18.7
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHH
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECY 181 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~ 181 (224)
+...||.|...++.. +.+.. =|..+|+.||
T Consensus 2 m~~~C~~C~k~Vy~~-Ek~~~--~g~~~Hk~CF 31 (31)
T 1zfo_A 2 MNPNCARCGKIVYPT-EKVNC--LDKFWHKACF 31 (31)
T ss_dssp CCCBCSSSCSBCCGG-GCCCS--SSSCCCGGGC
T ss_pred CCCcCCccCCEEecc-eeEEE--CCeEecccCC
Confidence 345688888776653 33332 3778888775
No 91
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=64.94 E-value=1.3 Score=30.80 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=32.3
Q ss_pred CCCccchhhcccCCCceeE-eccCCccCHHHHHHHHhc---CcCCCCCCccccc
Q 027385 151 HHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIKR---DKYCCPICSKSVI 200 (224)
Q Consensus 151 ~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~l~~---~~~~CPiCrksi~ 200 (224)
..|+||...- + .+.++. =.|.-+||..|+..-+.. ..+.||.|...+.
T Consensus 19 ~~C~~C~~~~-~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 19 WICPGCNKPD-D-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp ECBTTTTBCC-S-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred cCCCCCCCCC-C-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4599998762 2 222222 268999999999754432 4788999987654
No 92
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=62.87 E-value=2.8 Score=28.57 Aligned_cols=42 Identities=19% Similarity=0.471 Sum_probs=29.1
Q ss_pred CCCCCccchhhccc---CCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 149 MHHHCPICYEYLFD---SLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 149 ~~~~CpICle~lf~---s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
....|+.|.+.+.. ..+.+..+ |..+|..|| +|-.|+++|.+
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~--~~~~H~~CF---------~C~~C~~~L~~ 58 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYE--GQSWHDYCF---------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEET--TEEEETTTC---------BCSSSCCBCTT
T ss_pred hCccCcccCCcccCCCCCceeEEEC--cceeCcccC---------EehhcCCCCCC
Confidence 34678999988764 23334443 778898775 67889988864
No 93
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.04 E-value=4 Score=27.34 Aligned_cols=40 Identities=18% Similarity=0.489 Sum_probs=24.0
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
...|+.|.+.+......+..+ |..+|..|| +|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF---------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVAL--DRVFHVGCF---------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECS--SSEECTTTC---------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEEC--CCeEcccCC---------cccccCCcCC
Confidence 356777777765432223333 677777665 5667777764
No 94
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.90 E-value=3.8 Score=27.78 Aligned_cols=43 Identities=16% Similarity=0.396 Sum_probs=28.9
Q ss_pred CCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
.....|+.|.+.+......+..+ |..+|..|| +|-.|+++|.+
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF---------~C~~C~~~L~~ 51 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSN--GELYHEQCF---------VCAQCFQQFPE 51 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEET--TEEECTTTC---------CCTTTCCCCGG
T ss_pred CCCCCchhcCCccCCCceEEEeC--ccEeccccC---------eECCCCCCCCC
Confidence 44567999999876433323333 778888775 57778888765
No 95
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=60.53 E-value=2.7 Score=33.76 Aligned_cols=32 Identities=25% Similarity=0.716 Sum_probs=21.6
Q ss_pred ceeecCccccccCCCCcCeeccCCCCcceeCC
Q 027385 89 GEYFCDICKFYDDDIEKGQFHCDDCGICRIGG 120 (224)
Q Consensus 89 ~~Y~C~~C~l~dd~~~k~~yHC~~CgiCR~G~ 120 (224)
..|-|+.|.+=--...++-|||+.||+|---.
T Consensus 97 ~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~ 128 (143)
T 2dkt_A 97 RQYHCESCGICRIGPKEDFFHCLKCNLCLTTN 128 (143)
T ss_dssp SEEEETTTTEEEESCGGGEEEETTTTEEEEGG
T ss_pred ceecCCCCCceeccCCcCcEECCcCCeeeccc
Confidence 34555555544334468999999999996543
No 96
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=60.47 E-value=3.8 Score=26.29 Aligned_cols=46 Identities=17% Similarity=0.538 Sum_probs=28.4
Q ss_pred CCccchhhcccCCCceeEeccCCccCHHHHHHHHhc---CcCCCCCCccc
Q 027385 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR---DKYCCPICSKS 198 (224)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~---~~~~CPiCrks 198 (224)
.|.||... -+..+-+.--.|.-.||..|++.=|.. ....||.|.++
T Consensus 2 ~C~vC~~~-~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK-GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS-SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCC-CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 47777754 111111222368899999999753332 46789999764
No 97
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.76 E-value=3.7 Score=28.25 Aligned_cols=41 Identities=20% Similarity=0.570 Sum_probs=26.2
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
...|+.|.+.+......+..+ |..+|..|| +|-.|+++|.+
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYK--GTVWHKDCF---------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECS--SCEEETTTC---------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEEC--ccccccccC---------chhhCCCccCC
Confidence 457888888765432223333 778887765 56678877764
No 98
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=56.32 E-value=4.8 Score=27.12 Aligned_cols=48 Identities=21% Similarity=0.523 Sum_probs=32.6
Q ss_pred CCCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHh---cCcCCCCCCccc
Q 027385 147 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK---RDKYCCPICSKS 198 (224)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~---~~~~~CPiCrks 198 (224)
...+..|.||.+. .+-+.--.|.-.||..|+..-+. .....||.|.+.
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456679999863 22222236788999999987443 257889999763
No 99
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.27 E-value=4.1 Score=27.21 Aligned_cols=41 Identities=24% Similarity=0.523 Sum_probs=25.6
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
...|+.|.+.+......+ ..=|..+|..|| +|-.|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~--~a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL--EYGGQTWHEHCF---------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE--CSTTCCEETTTC---------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEE--EECccccCcccC---------eECCCCCcCCC
Confidence 356888888765422222 233778887765 57778777764
No 100
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.08 E-value=6.5 Score=26.31 Aligned_cols=41 Identities=20% Similarity=0.457 Sum_probs=27.6
Q ss_pred CCCCccchhhccc--CCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 150 HHHCPICYEYLFD--SLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 150 ~~~CpICle~lf~--s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
...|+.|.+.+.. +...+. .=|..+|..|| +|-.|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~CF---------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS--FEERQWHNDCF---------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE--CSSCEECTTTC---------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEE--ECCcccCcccC---------EeccCCCcCCC
Confidence 4568888888764 222222 24788898775 67788888764
No 101
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.81 E-value=0.86 Score=33.26 Aligned_cols=55 Identities=22% Similarity=0.524 Sum_probs=36.9
Q ss_pred CCCCCccchhhcccCCCceeEe--ccCCccCHHHHHHHHh-------cCcCCCCCCccccccchH
Q 027385 149 MHHHCPICYEYLFDSLRNTTVM--KCGHTMHCECYHEMIK-------RDKYCCPICSKSVIDMSR 204 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~L--pCGH~~H~~C~~~~l~-------~~~~~CPiCrksi~dm~~ 204 (224)
.+..|.||...-.+ .....++ .|.-.||..|+..=|. .....||.|......|++
T Consensus 15 ~~~~C~vC~~~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~ 78 (88)
T 1wev_A 15 MGLACVVCRQMTVA-SGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQ 78 (88)
T ss_dssp HCCSCSSSCCCCCC-TTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTT
T ss_pred CCCcCCCCCCCCCC-CCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhcc
Confidence 35679999975211 1122333 7899999999986432 256889999887776653
No 102
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=54.21 E-value=9.7 Score=25.44 Aligned_cols=9 Identities=33% Similarity=1.073 Sum_probs=6.0
Q ss_pred cccCCCCCC
Q 027385 78 AQVCTNCGV 86 (224)
Q Consensus 78 ~~~C~~Cg~ 86 (224)
...||.||.
T Consensus 18 ~~fCPkCG~ 26 (55)
T 2k4x_A 18 HRFCPRCGP 26 (55)
T ss_dssp SCCCTTTTT
T ss_pred cccCcCCCC
Confidence 356777775
No 103
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=52.57 E-value=7.4 Score=23.79 Aligned_cols=15 Identities=33% Similarity=0.738 Sum_probs=11.7
Q ss_pred cCCCCCCccccccch
Q 027385 189 KYCCPICSKSVIDMS 203 (224)
Q Consensus 189 ~~~CPiCrksi~dm~ 203 (224)
...||+|.+.+.+-.
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 478999999988643
No 104
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=52.19 E-value=6.9 Score=25.80 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=10.9
Q ss_pred EeCCCCccccc-------cccCCCCCC
Q 027385 67 ICSVCDTEQPV-------AQVCTNCGV 86 (224)
Q Consensus 67 lC~~C~~~q~~-------~~~C~~Cg~ 86 (224)
+|+.|+++.+. +-.||+||-
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCc
Confidence 46666655443 235666664
No 105
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=51.73 E-value=13 Score=27.39 Aligned_cols=44 Identities=18% Similarity=0.575 Sum_probs=30.8
Q ss_pred CCCCCCccchhhcccCCCceeEec---cCCccCHHHHHHH------------Hh---cCcCCCCCCc
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMK---CGHTMHCECYHEM------------IK---RDKYCCPICS 196 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~Lp---CGH~~H~~C~~~~------------l~---~~~~~CPiCr 196 (224)
..+..|+||-- +++. ..+| ||=.||..|+.+. ++ ....+||-|.
T Consensus 13 ~~D~~C~VC~~--~t~~---~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 13 VNDEMCDVCEV--WTAE---SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCSCCCTTTCC--CCSS---CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCCcccCcccc--cccc---ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 45778999974 4432 2344 6999999999997 21 1357899994
No 106
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.66 E-value=7.1 Score=26.81 Aligned_cols=41 Identities=22% Similarity=0.505 Sum_probs=26.4
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
...|..|.+.+......+.. =|..+|..|| +|-.|+++|.+
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFY--EDRHFHEGCF---------RCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCC--SSCCCBTTTS---------BCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEEe--CCccccccCC---------eecCCCCccCC
Confidence 45688888886632222222 2788888765 57788888764
No 107
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.48 E-value=8.1 Score=27.13 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=30.8
Q ss_pred CCCccchhhcccCCCceeEeccCCccCHHHHHHHHh----cCcCCCCCCccccc
Q 027385 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK----RDKYCCPICSKSVI 200 (224)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~----~~~~~CPiCrksi~ 200 (224)
.-| ||.....+...-|.--.|.-+||..|+.--.. ...+.||.|+.+..
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 345 78776322222223346899999999953221 25799999997653
No 108
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=51.38 E-value=2.6 Score=27.51 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=28.0
Q ss_pred CCccchhhcccCCCceeEe-ccCCccCHHHHHHHH---hcCcCCCCCCc
Q 027385 152 HCPICYEYLFDSLRNTTVM-KCGHTMHCECYHEMI---KRDKYCCPICS 196 (224)
Q Consensus 152 ~CpICle~lf~s~~~v~~L-pCGH~~H~~C~~~~l---~~~~~~CPiCr 196 (224)
.|+||.....+...-+.-- .|.-.||..|+.--. ....|.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778887743322222223 588999999975321 12579999985
No 109
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=50.73 E-value=4.2 Score=27.66 Aligned_cols=9 Identities=33% Similarity=0.988 Sum_probs=4.1
Q ss_pred CCCCccccc
Q 027385 192 CPICSKSVI 200 (224)
Q Consensus 192 CPiCrksi~ 200 (224)
|..|+++|.
T Consensus 30 C~~C~~~L~ 38 (76)
T 1iml_A 30 CEKCGKTLT 38 (76)
T ss_dssp CTTTCCBCC
T ss_pred ccccCccCC
Confidence 444444443
No 110
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=50.67 E-value=14 Score=18.71 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=13.8
Q ss_pred cCCCCCCccccccchHHH
Q 027385 189 KYCCPICSKSVIDMSRTW 206 (224)
Q Consensus 189 ~~~CPiCrksi~dm~~~~ 206 (224)
.|.|++|.+++...+...
T Consensus 2 ~~~C~~C~k~f~~~~~l~ 19 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNLK 19 (30)
T ss_dssp CCCCSSSSCCCSCSHHHH
T ss_pred CccCCCCCCccCCHHHHH
Confidence 478999999998765543
No 111
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.15 E-value=6.8 Score=26.09 Aligned_cols=40 Identities=20% Similarity=0.542 Sum_probs=24.7
Q ss_pred CCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
..|+.|.+.+......+.. =|..+|..|| +|-.|+++|.+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCF---------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTT---------CCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCC---------cccccCCccCC
Confidence 4688888876643222322 3677787665 56677777754
No 112
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.32 E-value=6.9 Score=26.83 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=23.6
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
...|+.|.+.+.+ +.+.. =|..+|..|| +|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~~--~~~~a--~~~~~H~~CF---------~C~~C~~~L~ 52 (81)
T 1x6a_A 15 GEFCHGCSLLMTG--PFMVA--GEFKYHPECF---------ACMSCKVIIE 52 (81)
T ss_dssp SCBCTTTCCBCCS--CCBCC--TTCCBCTTSC---------BCTTTCCBCC
T ss_pred CCcCccCCCCcCc--eEEEE--CCceeccccC---------CccCCCCccC
Confidence 3467888877652 22222 3677777654 5777777775
No 113
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=48.79 E-value=3.4 Score=27.86 Aligned_cols=49 Identities=16% Similarity=0.479 Sum_probs=32.2
Q ss_pred CCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHh---cCcCCCCCCccccc
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK---RDKYCCPICSKSVI 200 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~---~~~~~CPiCrksi~ 200 (224)
..+..|.||.+. .+-+.--.|.-.||..|+..-|. .....||.|.....
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 445678888853 22222236889999999985433 24678999986543
No 114
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.68 E-value=8.3 Score=26.17 Aligned_cols=41 Identities=22% Similarity=0.467 Sum_probs=27.7
Q ss_pred CCCCccchhhccc--CCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 150 HHHCPICYEYLFD--SLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 150 ~~~CpICle~lf~--s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
...|+.|.+.+.. ..+.+. .=|..+|..|| +|-.|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~--a~~~~wH~~CF---------~C~~C~~~L~~ 47 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFIC--FQDSQWHSECF---------NCGKCSVSLVG 47 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEE--ETTEEEEGGGC---------BCTTTCCBCSS
T ss_pred CCCCccCCCcccCCCCceeEE--ECCcccCcccC---------ChhhCCCcCCC
Confidence 4568888888764 223333 34778888775 67788888764
No 115
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=48.66 E-value=7.1 Score=28.43 Aligned_cols=15 Identities=27% Similarity=0.569 Sum_probs=8.7
Q ss_pred cceeecCccCcccccc
Q 027385 122 ENYFHCKRCGSCYSTS 137 (224)
Q Consensus 122 ~~~fHC~~C~~C~s~~ 137 (224)
+||| |..||.=+|++
T Consensus 50 ~~yF-C~~C~~LiSkk 64 (81)
T 2jrp_A 50 VDYF-CQNGHGLISKK 64 (81)
T ss_dssp EEEC-CTTTTCCCCTT
T ss_pred cCee-eccCCCEeecc
Confidence 3444 66666666654
No 116
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=48.49 E-value=4.5 Score=31.47 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=13.5
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..+.||+|.+++...+..
T Consensus 160 ~~~~C~~C~~~f~~~~~L 177 (190)
T 2i13_A 160 KPYKCPECGKSFSRRDAL 177 (190)
T ss_dssp CCEECTTTCCEESSHHHH
T ss_pred CCeECCCCCCccCCHHHH
Confidence 458899999998865443
No 117
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.16 E-value=6.3 Score=26.73 Aligned_cols=40 Identities=25% Similarity=0.593 Sum_probs=27.8
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
...|+.|.+.+... +.+. .=|..+|..|| +|..|+++|.+
T Consensus 9 ~~~C~~C~~~I~~~-~~v~--a~~~~~H~~CF---------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFA-EKVS--SLGKDWHKFCL---------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTT-TEEE--ETTEEEETTTC---------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECC-eEEE--ECCeEeeCCCC---------CCCCCCCccCC
Confidence 45789999887642 3333 34788888765 68888888874
No 118
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=47.26 E-value=6.9 Score=27.87 Aligned_cols=43 Identities=23% Similarity=0.450 Sum_probs=27.9
Q ss_pred CCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
.|..|...|.+ .. -...=|..+...|+.+. ...+|..|++.|.
T Consensus 35 ~C~~C~~~L~~--~~-~~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~ 77 (101)
T 2cup_A 35 RCAKCLHPLAN--ET-FVAKDNKILCNKCTTRE---DSPKCKGCFKAIV 77 (101)
T ss_dssp CCSSSCCCTTS--SC-CEEETTEEECHHHHTTC---CCCBCSSSCCBCC
T ss_pred cccccCCCCCc--Ce-eECcCCEEEChhHhhhh---cCCccccCCCccc
Confidence 57777777632 11 22334677778887543 3468999999987
No 119
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=46.27 E-value=1.3 Score=33.41 Aligned_cols=50 Identities=20% Similarity=0.410 Sum_probs=33.7
Q ss_pred CCCCccchhhcccCCCceeEe--ccCCccCHHHHHHHH---------hcCcCCCCCCccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVM--KCGHTMHCECYHEMI---------KRDKYCCPICSKSVI 200 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~L--pCGH~~H~~C~~~~l---------~~~~~~CPiCrksi~ 200 (224)
...|+||...+.+.. ..+.- .|.-+||..|+.--. ....+.||.|++...
T Consensus 3 ~~~C~iC~~p~~~~~-~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQ-DAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTS-CEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCC-CEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 346999998865543 33333 688999999985221 114799999987653
No 120
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.88 E-value=8.3 Score=26.79 Aligned_cols=43 Identities=26% Similarity=0.572 Sum_probs=29.4
Q ss_pred CCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccccc
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (224)
.....|+.|.+.+... +.+.. =|..+|..|| +|-.|+++|.+.
T Consensus 13 ~~~~~C~~C~~~I~~~-e~v~a--~~~~wH~~CF---------~C~~C~~~L~~~ 55 (82)
T 2co8_A 13 GAGDLCALCGEHLYVL-ERLCV--NGHFFHRSCF---------RCHTCEATLWPG 55 (82)
T ss_dssp CSSCBCSSSCCBCCTT-TBCCB--TTBCCBTTTC---------BCSSSCCBCCTT
T ss_pred CCCCCCcccCCCcccc-eEEEE--CCCeeCCCcC---------EEcCCCCCcCCC
Confidence 4456799999887652 33333 3788998875 677888887653
No 121
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=45.28 E-value=14 Score=23.66 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=23.3
Q ss_pred CcCCCCCCccccccchHHHHHHHHHHhcCCCCc
Q 027385 188 DKYCCPICSKSVIDMSRTWKRIDEEMNSSIFFP 220 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~lD~~i~~~pmp~ 220 (224)
..|.|++|.+.+...+.+.+.+.......|-|.
T Consensus 36 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p~ 68 (70)
T 1x5w_A 36 RPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68 (70)
T ss_dssp CSEECSSSSCEESSHHHHHHHHHHHHSSSCCSS
T ss_pred CCEeCCCCCCccCCHHHHHHHHHHHhCCCCCCC
Confidence 358999999999887666666655555555554
No 122
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=43.93 E-value=7.2 Score=22.86 Aligned_cols=16 Identities=38% Similarity=1.055 Sum_probs=13.2
Q ss_pred cCCCCCCccccccchH
Q 027385 189 KYCCPICSKSVIDMSR 204 (224)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (224)
.++||+|+..+-|+..
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 5789999999988654
No 123
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.81 E-value=11 Score=26.14 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=28.2
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
....|+.|.+.+... +.+..+ |..+|..|| +|-.|+++|.+
T Consensus 14 ~~~~C~~C~~~I~~~-~~v~a~--~~~wH~~CF---------~C~~C~~~L~~ 54 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHG-QSLLAL--DKQWHVSCF---------KCQTCSVILTG 54 (80)
T ss_dssp SCSCCTTTCCCCSSS-CCEEET--TEEECTTTC---------BCSSSCCBCSS
T ss_pred CCCCCcCcCCeeCCC-eEEEEC--CcccccccC---------CcCcCCCCcCC
Confidence 345799999887642 334444 788888765 67788888763
No 124
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.72 E-value=11 Score=24.74 Aligned_cols=9 Identities=33% Similarity=1.091 Sum_probs=6.3
Q ss_pred cccCCCCCC
Q 027385 78 AQVCTNCGV 86 (224)
Q Consensus 78 ~~~C~~Cg~ 86 (224)
-..||.||+
T Consensus 19 ~k~CP~CG~ 27 (50)
T 3j20_Y 19 NKFCPRCGP 27 (50)
T ss_dssp SEECSSSCS
T ss_pred cccCCCCCC
Confidence 356888876
No 125
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=42.77 E-value=18 Score=33.20 Aligned_cols=48 Identities=19% Similarity=0.516 Sum_probs=34.6
Q ss_pred CCCCccchhhcccCCCceeEeccCCc--cCHHHHHHHHh-cCcCCCCCCccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHT--MHCECYHEMIK-RDKYCCPICSKSVI 200 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~--~H~~C~~~~l~-~~~~~CPiCrksi~ 200 (224)
...|||=+..|. .+++...|.|+ |=..=|.++.. ....+||||.+.+.
T Consensus 249 SL~CPlS~~ri~---~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMK---YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCS---SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCcccccc---ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 457998777653 58899999987 55554444432 35789999999884
No 126
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=42.66 E-value=10 Score=25.99 Aligned_cols=24 Identities=25% Similarity=0.653 Sum_probs=16.2
Q ss_pred CeeEeCCCCcc--ccccccCCCCCCC
Q 027385 64 KQVICSVCDTE--QPVAQVCTNCGVN 87 (224)
Q Consensus 64 ~~vlC~~C~~~--q~~~~~C~~Cg~~ 87 (224)
++.+|.+|... ++..-+||.|++.
T Consensus 10 ~~~~C~vC~~~~~~~akY~CPrC~~r 35 (59)
T 1x4s_A 10 PAGPCGFCPAGEVQPARYTCPRCNAP 35 (59)
T ss_dssp CCEEECSSCTTCCEEECEECTTTCCE
T ss_pred CCCcCcCCCCCcCCCccccCcCCCCC
Confidence 35788888863 4555677777754
No 127
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.77 E-value=7.4 Score=27.63 Aligned_cols=65 Identities=20% Similarity=0.563 Sum_probs=36.8
Q ss_pred ccceeecCccCccccccccCcceeecCCCCCCCccchhhcccCCCceeE-eccCCccCHHHHHHHHhc---C-cCCCCCC
Q 027385 121 RENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIKR---D-KYCCPIC 195 (224)
Q Consensus 121 ~~~~fHC~~C~~C~s~~l~~~H~C~e~~~~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~l~~---~-~~~CPiC 195 (224)
+.+...|..|+. ...=.|. +..|.||... .+ ...+.. =.|.-.||..|++.=|.. . ...||.|
T Consensus 7 ~~~~~~c~~C~~------~~~w~C~----~c~C~vC~~~-~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C 74 (77)
T 2e6s_A 7 GRNDTECDLCGG------DPEKKCH----SCSCRVCGGK-HE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 74 (77)
T ss_dssp CCCCCCCTTTCS------CSSSCCS----SSSCSSSCCC-CC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTT
T ss_pred ccCCccChhhcC------CCCeECC----CCCCcCcCCc-CC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCc
Confidence 356666666653 1223342 3368888853 11 122222 267899999999854432 3 5678888
Q ss_pred cc
Q 027385 196 SK 197 (224)
Q Consensus 196 rk 197 (224)
..
T Consensus 75 ~~ 76 (77)
T 2e6s_A 75 KT 76 (77)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 128
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.57 E-value=12 Score=25.47 Aligned_cols=39 Identities=21% Similarity=0.464 Sum_probs=24.2
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
...|+.|.+.+.+ +.+.. =|..+|..|| +|-.|+++|.+
T Consensus 15 ~~~C~~C~~~I~~--~~v~a--~~~~~H~~CF---------~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLE--NYLSA--MDTVWHPECF---------VCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCS--SCEEE--TTEEECTTTC---------BCSSSCCBSCS
T ss_pred CCccccCCCeecc--eeEEE--CCCeEecCcC---------ChhhCCCCCCC
Confidence 3567778777654 23333 3667777664 57777777764
No 129
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.52 E-value=12 Score=24.80 Aligned_cols=40 Identities=28% Similarity=0.749 Sum_probs=25.4
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (224)
...|+.|.+.+.+ +.+..+ |..+|..|| +|-.|++.|.+.
T Consensus 5 ~~~C~~C~~~I~~--~~~~a~--~~~~H~~CF---------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG--RVIKAM--NNSWHPECF---------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS--CCEEET--TEEECTTTS---------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc--eEEEEC--cccccccCC---------EeCCCCCcCCCC
Confidence 3467888877653 223333 677887765 577788777653
No 130
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.32 E-value=12 Score=25.83 Aligned_cols=40 Identities=15% Similarity=0.315 Sum_probs=27.2
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
....|+.|.+.+.+ +.+. -=|..+|..|| +|-.|+++|.+
T Consensus 14 ~~~~C~~C~~~I~~--~~v~--a~~~~~H~~CF---------~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIIDE--QPLI--FKNDPYHPDHF---------NCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCCS--CCCC--CSSSCCCTTTS---------BCSSSCCBCCT
T ss_pred CCCCCccCCCEecc--eEEE--ECcceeCCCCC---------EeCCCCCccCC
Confidence 34568888888763 2333 33788888765 67788888774
No 131
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=41.31 E-value=19 Score=32.87 Aligned_cols=48 Identities=23% Similarity=0.546 Sum_probs=35.2
Q ss_pred CCCCccchhhcccCCCceeEeccCCc--cCHHHHHHHHh-cCcCCCCCCccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHT--MHCECYHEMIK-RDKYCCPICSKSVI 200 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~--~H~~C~~~~l~-~~~~~CPiCrksi~ 200 (224)
...|||=+..|. .+++...|.|+ |=..=|.++.. ....+||+|++.+.
T Consensus 215 SL~CPlS~~ri~---~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLT---IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCS---SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceec---cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 346998777653 58899999987 66655555543 24789999999985
No 132
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=41.23 E-value=9.3 Score=25.11 Aligned_cols=44 Identities=18% Similarity=0.404 Sum_probs=29.0
Q ss_pred CCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccccc
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm 202 (224)
.....|+.|.+.+......+. .=|..+|..|| +|-.|++++.+.
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~--~~~~~~H~~CF---------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVN--SNGELYHEQCF---------VCAQCFQQFPEG 52 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEE--ETTEEEETTTS---------SCTTTCCCCGGG
T ss_pred cCCccchhcCccccCCceEEE--eCcCeeCcCCC---------cccCCCCCCCCC
Confidence 445679999988765322222 33677888776 577888888653
No 133
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.07 E-value=11 Score=26.43 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=27.3
Q ss_pred CCCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 147 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
+.....|+.|.+.+.+ +.+. .=|..+|..|| +|-.|++.|.+
T Consensus 22 ~~~~~~C~~C~~~I~~--~~v~--a~~~~~H~~CF---------~C~~C~~~L~~ 63 (90)
T 2dar_A 22 GKRTPMCAHCNQVIRG--PFLV--ALGKSWHPEEF---------NCAHCKNTMAY 63 (90)
T ss_dssp TTCCCBBSSSCCBCCS--CEEE--ETTEEECTTTC---------BCSSSCCBCSS
T ss_pred CCCCCCCccCCCEecc--eEEE--ECCccccccCC---------ccCCCCCCCCC
Confidence 3445678888887642 3333 34788887765 67778888764
No 134
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=40.70 E-value=11 Score=26.48 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=23.6
Q ss_pred eeEeCCCCccccc------cccCCCCCCCcceeecCccccc
Q 027385 65 QVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKFY 99 (224)
Q Consensus 65 ~vlC~~C~~~q~~------~~~C~~Cg~~f~~Y~C~~C~l~ 99 (224)
.|.|..|..+|.+ ...|..||..+++-.=.+-+|-
T Consensus 7 ~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~PTGGKA~l~ 47 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGGKGNIK 47 (66)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCCEEEECCSSSCEEC
T ss_pred EEECCCCCCceEEEecCceEEEcccCCCEEeecCCcceeee
Confidence 6778888888776 2368888887766554444443
No 135
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.96 E-value=14 Score=24.41 Aligned_cols=38 Identities=24% Similarity=0.589 Sum_probs=24.3
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
...|+.|.+.+.. +.+.. =|..+|..|| +|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~--~~~~a--~~~~~H~~CF---------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS--GGITY--QDQPWHADCF---------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT--TCEEE--TTEEECTTTT---------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc--ceEEE--CccccccCcC---------EECCCCCCCC
Confidence 3567888877653 23333 3677887765 5777877775
No 136
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=39.80 E-value=29 Score=25.72 Aligned_cols=27 Identities=26% Similarity=0.625 Sum_probs=18.6
Q ss_pred eccCCccCHHHHHH------HHhcCcCCCCCCc
Q 027385 170 MKCGHTMHCECYHE------MIKRDKYCCPICS 196 (224)
Q Consensus 170 LpCGH~~H~~C~~~------~l~~~~~~CPiCr 196 (224)
-.||..||..|+.. .+......||-|+
T Consensus 30 ~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 30 ADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp TTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred hhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 47899999999952 2333566677664
No 137
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=39.74 E-value=19 Score=18.06 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=13.1
Q ss_pred cCCCCCCccccccchHH
Q 027385 189 KYCCPICSKSVIDMSRT 205 (224)
Q Consensus 189 ~~~CPiCrksi~dm~~~ 205 (224)
.+.|++|.+++...+..
T Consensus 2 ~~~C~~C~~~f~~~~~l 18 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGNL 18 (29)
T ss_dssp CCCCSSCCCCCCTTTHH
T ss_pred CCcCCCCCcccCCHHHH
Confidence 47899999998865543
No 138
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=39.15 E-value=15 Score=18.33 Aligned_cols=15 Identities=33% Similarity=0.897 Sum_probs=11.8
Q ss_pred CCCCCCccccccchH
Q 027385 190 YCCPICSKSVIDMSR 204 (224)
Q Consensus 190 ~~CPiCrksi~dm~~ 204 (224)
|.|++|.+++...+.
T Consensus 2 ~~C~~C~k~f~~~~~ 16 (27)
T 1znf_A 2 YKCGLCERSFVEKSA 16 (27)
T ss_dssp CBCSSSCCBCSSHHH
T ss_pred ccCCCCCCcCCCHHH
Confidence 689999999886443
No 139
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=38.46 E-value=20 Score=18.04 Aligned_cols=16 Identities=13% Similarity=0.727 Sum_probs=12.5
Q ss_pred cCCCCCCccccccchH
Q 027385 189 KYCCPICSKSVIDMSR 204 (224)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (224)
.+.|++|.+++...+.
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 1ard_A 2 SFVCEVCTRAFARQEH 17 (29)
T ss_dssp CCBCTTTCCBCSSHHH
T ss_pred CeECCCCCcccCCHHH
Confidence 4789999999986443
No 140
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=37.30 E-value=29 Score=18.76 Aligned_cols=19 Identities=32% Similarity=0.714 Sum_probs=14.1
Q ss_pred cCCCCCCccccccchHHHH
Q 027385 189 KYCCPICSKSVIDMSRTWK 207 (224)
Q Consensus 189 ~~~CPiCrksi~dm~~~~~ 207 (224)
.|.|++|.+.+...+...+
T Consensus 2 p~~C~~C~k~F~~~~~L~~ 20 (33)
T 1rim_A 2 KFACPECPKRFMRSDHLSK 20 (33)
T ss_dssp CCCCSSSCCCCSSHHHHHH
T ss_pred cccCCCCCchhCCHHHHHH
Confidence 4789999999987554433
No 141
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=37.26 E-value=14 Score=18.76 Aligned_cols=16 Identities=25% Similarity=0.654 Sum_probs=12.6
Q ss_pred cCCCCCCccccccchH
Q 027385 189 KYCCPICSKSVIDMSR 204 (224)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (224)
.|.|++|.+++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKHQ 18 (28)
T ss_dssp SEECSSSCCEESCHHH
T ss_pred CccCCCCCcccCCHHH
Confidence 5789999999886543
No 142
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=37.05 E-value=26 Score=31.11 Aligned_cols=24 Identities=25% Similarity=0.643 Sum_probs=21.0
Q ss_pred CeeEeCCCCcccccc-ccCCCCCCC
Q 027385 64 KQVICSVCDTEQPVA-QVCTNCGVN 87 (224)
Q Consensus 64 ~~vlC~~C~~~q~~~-~~C~~Cg~~ 87 (224)
+-+.|+.|+++-.+. ..|++||..
T Consensus 207 R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 207 RYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp EEEEETTTCCEEECCTTSCSSSCCC
T ss_pred EEEEeCCCCCEEeecCcCCcCCCCC
Confidence 579999999998874 689999987
No 143
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.26 E-value=15 Score=25.11 Aligned_cols=39 Identities=21% Similarity=0.604 Sum_probs=26.8
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
...|+.|.+.+.+ +.+.. =|..+|..|| +|-.|+++|.+
T Consensus 15 ~~~C~~C~~~I~~--~~v~a--~~~~wH~~CF---------~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIEG--EVVSA--LGKTYHPDCF---------VCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCCS--CCEEE--TTEEECTTTS---------SCSSSCCCCCS
T ss_pred CCcCccccCEecc--ceEEE--CCceeCccCC---------ccccCCCCCCC
Confidence 4578999988663 33333 3788888776 57778888764
No 144
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=36.25 E-value=11 Score=28.44 Aligned_cols=10 Identities=20% Similarity=0.644 Sum_probs=4.8
Q ss_pred eeEeCCCCcc
Q 027385 65 QVICSVCDTE 74 (224)
Q Consensus 65 ~vlC~~C~~~ 74 (224)
...|..|+.+
T Consensus 73 ~~~C~~CG~~ 82 (119)
T 2kdx_A 73 ELECKDCSHV 82 (119)
T ss_dssp EEECSSSSCE
T ss_pred eEEcCCCCCE
Confidence 4445555444
No 145
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=36.13 E-value=16 Score=24.94 Aligned_cols=19 Identities=21% Similarity=0.551 Sum_probs=14.5
Q ss_pred EeCCCCccccccccCCCCCC
Q 027385 67 ICSVCDTEQPVAQVCTNCGV 86 (224)
Q Consensus 67 lC~~C~~~q~~~~~C~~Cg~ 86 (224)
-|+.|+..++.. .||+|+.
T Consensus 3 AC~~C~~v~~~~-~CpnC~~ 21 (59)
T 3lpe_B 3 ACLKCKYLTNDE-ICPICHS 21 (59)
T ss_dssp EETTTCBEESSS-BCTTTCC
T ss_pred ccccCCcccCCC-CCCCCCC
Confidence 478888887665 6888886
No 146
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=36.03 E-value=13 Score=26.88 Aligned_cols=32 Identities=28% Similarity=0.629 Sum_probs=21.9
Q ss_pred cccCCCCCCCcceeecCccccccCCCCcCeeccCCCCcceeCC
Q 027385 78 AQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGG 120 (224)
Q Consensus 78 ~~~C~~Cg~~f~~Y~C~~C~l~dd~~~k~~yHC~~CgiCR~G~ 120 (224)
.-.||+||...- | ++...+++|+.||-=-.||
T Consensus 27 ~y~Cp~CG~~~v---------~--r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 27 DHACPNCGEDRV---------D--RQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp CEECSSSCCEEE---------E--EEETTEEEETTTCCEEECC
T ss_pred cCcCCCCCCcce---------e--ccCCCeEECCCCCCEecCC
Confidence 346777776431 2 3456799999999877776
No 147
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=36.01 E-value=3 Score=28.96 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=30.9
Q ss_pred CCCCCCCccchhhcccCCCceeE-eccCCccCHHHHHHHHh--cCcCCCCCCccc
Q 027385 147 NSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK--RDKYCCPICSKS 198 (224)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~l~--~~~~~CPiCrks 198 (224)
+.....| ||.... + .+..+. -.|.-+||..|+.--.. ...|.||.|+++
T Consensus 16 ~~~~~~C-iC~~~~-~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 16 FQGLVTC-FCMKPF-A-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TTTCCCS-TTCCCC-T-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCCceEe-ECCCcC-C-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 3445567 888653 2 222333 47899999999964321 146889988764
No 148
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=35.60 E-value=22 Score=19.41 Aligned_cols=17 Identities=24% Similarity=0.638 Sum_probs=13.5
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..|.||+|.+++...+.
T Consensus 10 k~~~C~~C~k~f~~~~~ 26 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRSDH 26 (37)
T ss_dssp SSBCCTTTCCCBSSHHH
T ss_pred CCccCCCCCcccCcHHH
Confidence 46899999999986544
No 149
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=35.35 E-value=23 Score=25.80 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=26.8
Q ss_pred CeeEeCCCCccccc------cccCCCCCCCcceeecCccccc
Q 027385 64 KQVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKFY 99 (224)
Q Consensus 64 ~~vlC~~C~~~q~~------~~~C~~Cg~~f~~Y~C~~C~l~ 99 (224)
-.|.|..|..+|.+ ...|..||..+++-.=++-+|-
T Consensus 33 m~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~PTGGKa~l~ 74 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHAQTAVTCESCSTILCTPTGGKAKLS 74 (82)
T ss_dssp EEEECTTSCSCEEEESBCSSCCCCSSSCCCCEECCSSBCEEC
T ss_pred EEEECCCCCCeeEEEecCCeEEEccccCCEEeccCCCCeEec
Confidence 48999999999886 2479999998877654444443
No 150
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=35.23 E-value=21 Score=25.12 Aligned_cols=24 Identities=21% Similarity=0.551 Sum_probs=18.5
Q ss_pred cCeeEeCCCCccccccccCCCCCCC
Q 027385 63 VKQVICSVCDTEQPVAQVCTNCGVN 87 (224)
Q Consensus 63 ~~~vlC~~C~~~q~~~~~C~~Cg~~ 87 (224)
.++.-|..|...+ ..+.||+||..
T Consensus 9 ~~~~AC~~C~~~~-~~~~CPnC~s~ 32 (69)
T 1ryq_A 9 SSEKACRHCHYIT-SEDRCPVCGSR 32 (69)
T ss_dssp --CEEETTTCBEE-SSSSCTTTCCC
T ss_pred chhhhHHhCCccc-cCCcCCCccCC
Confidence 4578899999977 77889999843
No 151
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.20 E-value=23 Score=19.08 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=13.9
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..|.|++|.+++...+..
T Consensus 8 ~~~~C~~C~k~f~~~~~l 25 (36)
T 2elr_A 8 KTHLCDMCGKKFKSKGTL 25 (36)
T ss_dssp SSCBCTTTCCBCSSHHHH
T ss_pred CCeecCcCCCCcCchHHH
Confidence 468999999999865443
No 152
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=35.02 E-value=18 Score=24.67 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=23.5
Q ss_pred CCCCCccchhhcccCCCceeEe-ccCCccCHHHHH
Q 027385 149 MHHHCPICYEYLFDSLRNTTVM-KCGHTMHCECYH 182 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~L-pCGH~~H~~C~~ 182 (224)
....|++|..++.+...-+.-- .|.-.||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3457999999866543333334 799999999984
No 153
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.88 E-value=16 Score=25.40 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=25.4
Q ss_pred CeeEeCCCCccccc------cccCCCCCCCcceeecCcccc
Q 027385 64 KQVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKF 98 (224)
Q Consensus 64 ~~vlC~~C~~~q~~------~~~C~~Cg~~f~~Y~C~~C~l 98 (224)
-.|.|..|.++|.+ ...|..||..+++-.=.+-+|
T Consensus 14 m~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PTGGKa~l 54 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGKGIV 54 (63)
T ss_dssp EEEECSSSCCEEEEESSCSSCEECSSSCCEEEECCSSSCEE
T ss_pred EEEECCCCCCeeEEEecCCeEEEccCcCCEEecCCCCcEEE
Confidence 47899999999876 247888988887655444444
No 154
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=34.78 E-value=13 Score=27.80 Aligned_cols=13 Identities=8% Similarity=-0.123 Sum_probs=7.1
Q ss_pred CCccCHHHHHHHH
Q 027385 173 GHTMHCECYHEMI 185 (224)
Q Consensus 173 GH~~H~~C~~~~l 185 (224)
|..+...|+.+++
T Consensus 57 g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 57 SDIVCEQDIYEWT 69 (123)
T ss_dssp SSEEEGGGHHHHH
T ss_pred CEEEcHHHhHHHh
Confidence 4555555555554
No 155
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=34.40 E-value=23 Score=18.03 Aligned_cols=17 Identities=18% Similarity=0.614 Sum_probs=13.2
Q ss_pred cCCCCCCccccccchHH
Q 027385 189 KYCCPICSKSVIDMSRT 205 (224)
Q Consensus 189 ~~~CPiCrksi~dm~~~ 205 (224)
.|.|+.|.+++...+..
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (30)
T 1paa_A 2 AYACGLCNRAFTRRDLL 18 (30)
T ss_dssp CSBCTTTCCBCSSSHHH
T ss_pred CcCCcccCcccCChHHH
Confidence 47899999999865543
No 156
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=34.00 E-value=10 Score=24.82 Aligned_cols=39 Identities=26% Similarity=0.512 Sum_probs=25.4
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
...|+.|.+.+.+ +. +..=|..+|..|| +|-.|+++|.+
T Consensus 5 ~~~C~~C~~~I~~--~~--~~a~~~~~H~~CF---------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIEG--RV--VNAMGKQWHVEHF---------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECCS--CE--ECCTTSBEETTTC---------BCTTTCCBCSS
T ss_pred CCCCcccCCEecc--eE--EEECccccccCcC---------EECCCCCCCCC
Confidence 3468888887652 22 2334778887765 57788888764
No 157
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=33.93 E-value=17 Score=18.34 Aligned_cols=16 Identities=25% Similarity=0.771 Sum_probs=12.6
Q ss_pred cCCCCCCccccccchH
Q 027385 189 KYCCPICSKSVIDMSR 204 (224)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (224)
.+.|++|.+++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSA 18 (27)
T ss_dssp CEECSSSSCEESSHHH
T ss_pred CccCCCcChhhCCHHH
Confidence 4789999999986543
No 158
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=33.61 E-value=19 Score=18.24 Aligned_cols=16 Identities=31% Similarity=0.877 Sum_probs=12.5
Q ss_pred cCCCCCCccccccchH
Q 027385 189 KYCCPICSKSVIDMSR 204 (224)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (224)
.+.|++|.+++...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (29)
T 1rik_A 2 KFACPECPKRFMRSDH 17 (29)
T ss_dssp CEECSSSSCEESCSHH
T ss_pred CccCCCCCchhCCHHH
Confidence 3789999999886544
No 159
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=33.54 E-value=14 Score=18.89 Aligned_cols=16 Identities=25% Similarity=0.829 Sum_probs=12.5
Q ss_pred cCCCCCCccccccchH
Q 027385 189 KYCCPICSKSVIDMSR 204 (224)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (224)
.|.|++|.+++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (27)
T 2kvg_A 3 PYRCPLCRAGCPSLAS 18 (27)
T ss_dssp TEEETTTTEEESCHHH
T ss_pred CcCCCCCCcccCCHHH
Confidence 4789999999886443
No 160
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=33.35 E-value=26 Score=22.92 Aligned_cols=34 Identities=21% Similarity=0.602 Sum_probs=16.4
Q ss_pred cCCCCCCCcceeecCccccccCCCCcCeeccCCCC
Q 027385 80 VCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCG 114 (224)
Q Consensus 80 ~C~~Cg~~f~~Y~C~~C~l~dd~~~k~~yHC~~Cg 114 (224)
.|+.||..-+.|+=..=+ =.|++..-.|.|..||
T Consensus 17 ~Cp~Cg~~~~~~~q~Q~r-sadep~T~fy~C~~Cg 50 (57)
T 1qyp_A 17 TCPKCGNDTAYWWEMQTR-AGDEPSTIFYKCTKCG 50 (57)
T ss_dssp CCTTTCCSEEEEEEECCS-SSSCSSEEEEEESSSC
T ss_pred ECCCCCCCEEEEEEeecc-cCCCCCcEEEEcCCCC
Confidence 577777655555400000 0233445556666665
No 161
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=32.85 E-value=7.4 Score=32.05 Aligned_cols=48 Identities=17% Similarity=0.401 Sum_probs=31.6
Q ss_pred CCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhc---CcCCCCCCcccc
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR---DKYCCPICSKSV 199 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~---~~~~CPiCrksi 199 (224)
..+..|.||... ++-+.-=.|.-.||..|+..-+.. +...||.|++.-
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 445678999754 121111157899999999766542 468899998753
No 162
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.17 E-value=24 Score=23.80 Aligned_cols=38 Identities=21% Similarity=0.473 Sum_probs=25.1
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
...|+.|.+.+.. +.+ ..=|..+|..|| +|-.|+++|.
T Consensus 15 ~~~C~~C~~~I~~--~~v--~a~~~~~H~~CF---------~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQ--GGV--TYRDQPWHRECL---------VCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCS--CCE--ESSSSEECTTTC---------BCSSSCCBCT
T ss_pred CCcCCCCCCEecC--cEE--EECCchhhhhhC---------CcccCCCcCC
Confidence 4568888887654 222 234778887765 5777888775
No 163
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=31.98 E-value=23 Score=28.08 Aligned_cols=21 Identities=29% Similarity=0.855 Sum_probs=15.3
Q ss_pred cccCCC--CCC--C----cceeecCcccc
Q 027385 78 AQVCTN--CGV--N----MGEYFCDICKF 98 (224)
Q Consensus 78 ~~~C~~--Cg~--~----f~~Y~C~~C~l 98 (224)
...||+ ||. - |+++||.+|.+
T Consensus 118 ~~~c~~~~cg~g~fma~h~~r~~cgkc~~ 146 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHKDRLYCGKCHS 146 (152)
T ss_dssp SCBCCSTTSCSSSBEEECSSCEEESSSSS
T ss_pred cCcCCCccCCCceEecccCCCcccCCCce
Confidence 468999 987 3 35778888864
No 164
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=31.71 E-value=3 Score=27.90 Aligned_cols=48 Identities=19% Similarity=0.591 Sum_probs=31.7
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHh---cCcCCCCCCccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK---RDKYCCPICSKSVI 200 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~---~~~~~CPiCrksi~ 200 (224)
.+..|.||... .+-+.--.|.-.||..|+..=|. .....||.|.....
T Consensus 4 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45679999864 22222237889999999985433 24677998875443
No 165
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.58 E-value=20 Score=17.98 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=12.4
Q ss_pred cCCCCCCccccccchH
Q 027385 189 KYCCPICSKSVIDMSR 204 (224)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (224)
.+.|++|.+++...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGN 17 (29)
T ss_dssp CEECTTTSCEESCHHH
T ss_pred CccCCCCCCccCChhH
Confidence 3689999999886544
No 166
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.42 E-value=34 Score=23.94 Aligned_cols=29 Identities=28% Similarity=0.635 Sum_probs=18.7
Q ss_pred ccccCeeEeCCCCccccccccCCCCCCCc
Q 027385 60 RQDVKQVICSVCDTEQPVAQVCTNCGVNM 88 (224)
Q Consensus 60 r~~~~~vlC~~C~~~q~~~~~C~~Cg~~f 88 (224)
.+......|..|......++.|..|++.|
T Consensus 10 ~y~~~i~~C~IC~~~i~~g~~C~~C~h~f 38 (74)
T 2ct0_A 10 TYPDAVKICNICHSLLIQGQSCETCGIRM 38 (74)
T ss_dssp CCSSSSCBCSSSCCBCSSSEECSSSCCEE
T ss_pred hccCCCCcCcchhhHcccCCccCCCCchh
Confidence 34445667888877766666666666655
No 167
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.28 E-value=20 Score=18.05 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=12.7
Q ss_pred cCCCCCCccccccchH
Q 027385 189 KYCCPICSKSVIDMSR 204 (224)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (224)
.|.|++|.+++...+.
T Consensus 3 ~~~C~~C~~~f~~~~~ 18 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTS 18 (30)
T ss_dssp CEECTTTCCEESCHHH
T ss_pred CccCCCCCcccCCHHH
Confidence 4789999999886544
No 168
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.22 E-value=20 Score=24.37 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=28.2
Q ss_pred CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
....|+.|.+.+.. +.+ ..=|..+|..|| +|-.|++.|.+
T Consensus 14 ~~~~C~~C~~~I~~--~~~--~a~~~~~H~~CF---------~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVG--VFV--KLRDRHRHPECY---------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCS--SCE--ECSSCEECTTTT---------SCSSSCCCHHH
T ss_pred CCCccccCCCCccC--cEE--EECcceeCcCcC---------eeCCCCCCCCC
Confidence 34579999998765 223 334789998876 57788888753
No 169
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=31.14 E-value=6.5 Score=27.66 Aligned_cols=50 Identities=18% Similarity=0.433 Sum_probs=31.5
Q ss_pred CCCCCccchhhcccCCCceeE-e--ccCCccCHHHHHHHHh--------cCcCCCCCCcccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTV-M--KCGHTMHCECYHEMIK--------RDKYCCPICSKSVID 201 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~-L--pCGH~~H~~C~~~~l~--------~~~~~CPiCrksi~d 201 (224)
....| ||... .+. ..++. = .|.-+||..|+.--.. ...|.||.|+....+
T Consensus 15 ~~~~C-iC~~~-~~~-g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 15 IKVRC-VCGNS-LET-DSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP 75 (78)
T ss_dssp CCCCC-SSCCC-CCC-SCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred CCEEe-ECCCc-CCC-CCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence 34457 78875 222 23333 2 6999999999963221 137999999876543
No 170
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=30.84 E-value=14 Score=24.25 Aligned_cols=39 Identities=28% Similarity=0.617 Sum_probs=25.8
Q ss_pred CCccchhhcccCCCceeEeccCCccC--HHHHHHHHhcCcCCCCCCcccccc
Q 027385 152 HCPICYEYLFDSLRNTTVMKCGHTMH--CECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H--~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
.|+.|.+.+....+.+..+ |..+| ..|| +|-.|+++|.+
T Consensus 4 ~C~~C~~~I~~~~~~v~a~--~~~wH~~~~CF---------~C~~C~~~L~~ 44 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYN--NFSWHASTECF---------LCSCCSKCLIG 44 (65)
T ss_dssp ECTTTSSEECTTSCEEEET--TEEEETTTTTS---------BCTTTCCBCTT
T ss_pred CCcCCCCeeccCceEEEEC--CCccCCCCCCE---------ECCCCCCcCCC
Confidence 5788888766433334444 78888 7775 67778888753
No 171
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.82 E-value=5.4 Score=27.78 Aligned_cols=47 Identities=21% Similarity=0.416 Sum_probs=29.2
Q ss_pred CCCccchhhcccCCCceeEeccCCccCHHHHHHHH--------hcCcCCCCCCcccc
Q 027385 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMI--------KRDKYCCPICSKSV 199 (224)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l--------~~~~~~CPiCrksi 199 (224)
.-| ||..... ...-+.--.|.-+||..|+.--. ....|.||.|+..-
T Consensus 17 ~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 17 LYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 456 7877633 22222223789999999985211 12479999998654
No 172
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.71 E-value=19 Score=19.23 Aligned_cols=17 Identities=29% Similarity=0.778 Sum_probs=13.3
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..|.|++|.+++...+.
T Consensus 6 k~~~C~~C~k~f~~~~~ 22 (35)
T 2elx_A 6 SGYVCALCLKKFVSSIR 22 (35)
T ss_dssp CSEECSSSCCEESSHHH
T ss_pred CCeECCCCcchhCCHHH
Confidence 45899999999986444
No 173
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=30.57 E-value=24 Score=24.72 Aligned_cols=8 Identities=50% Similarity=1.385 Sum_probs=4.4
Q ss_pred eccCCCCc
Q 027385 108 FHCDDCGI 115 (224)
Q Consensus 108 yHC~~Cgi 115 (224)
-+|..||-
T Consensus 46 irCp~CG~ 53 (70)
T 1twf_L 46 VRCKDCGH 53 (70)
T ss_dssp TCCSSSCC
T ss_pred ccCCCCCc
Confidence 35666653
No 174
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.53 E-value=43 Score=19.36 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=14.5
Q ss_pred CcCCCCCCccccccchHHHHH
Q 027385 188 DKYCCPICSKSVIDMSRTWKR 208 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (224)
..|.|++|.+++...+..-+-
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2ytm_A 11 KPYKCMECGKAFGDNSSCTQH 31 (46)
T ss_dssp CSSSBTTTTBCCSSHHHHHHH
T ss_pred CCcCCCCCCchhCCHHHHHHH
Confidence 358899999988865544333
No 175
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.05 E-value=41 Score=24.85 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=31.6
Q ss_pred CCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
.|..|...|.+... .-...=|-.+...|+.+.+. ...+|-.|++.|..
T Consensus 34 ~C~~C~~~L~~~~~-~~~~~~g~~yC~~cy~~~f~-~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 34 KCSSCQAQLGDIGT-SSYTKSGMILCRNDYIRLFG-NSGAGGSGGHMGSG 81 (122)
T ss_dssp CCSSSCCCTTTSEE-CCEEETTEEECHHHHHHHHC-CCCSSSCSSCCSCC
T ss_pred CcCCCCCcccccCC-eEEEECCeeecHHHHHHHcC-CCCccccCCCCcCc
Confidence 67788777642111 12234477888889988764 23489999999985
No 176
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.99 E-value=49 Score=19.05 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=14.7
Q ss_pred CcCCCCCCccccccchHHHH
Q 027385 188 DKYCCPICSKSVIDMSRTWK 207 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (224)
..|.|++|.+++...+..-+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2emz_A 11 RPFKCNECGKGFGRRSHLAG 30 (46)
T ss_dssp CSCCCSSSCCCCSSHHHHHH
T ss_pred CCeECCCCCcccCCHHHHHH
Confidence 46899999999987554433
No 177
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.94 E-value=23 Score=24.14 Aligned_cols=39 Identities=23% Similarity=0.669 Sum_probs=24.8
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
...|+.|.+.+.+ +.+. .=|..+|..|| +|..|+++|.+
T Consensus 15 ~~~C~~C~~~I~~--~~~~--a~~~~~H~~CF---------~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPILD--RILR--AMGKAYHPGCF---------TCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCCS--CCEE--ETTEEECTTTC---------BCSSSCCBCTT
T ss_pred CCccccCCCeecc--eeEE--ECCccccHHhc---------CcccCCCccCC
Confidence 3568888887653 2222 23677887765 57778887753
No 178
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.75 E-value=28 Score=25.56 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=25.8
Q ss_pred eeEeCCCCccccc------cccCCCCCCCcceeecCccccc
Q 027385 65 QVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKFY 99 (224)
Q Consensus 65 ~vlC~~C~~~q~~------~~~C~~Cg~~f~~Y~C~~C~l~ 99 (224)
.|.|..|..+|.+ ...|..||..+++-.=++-+|-
T Consensus 36 ~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~PTGGKa~l~ 76 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLT 76 (86)
T ss_dssp EEECTTTCCEEEEETTCSSCCCCSSSCCCCSCCCSSSCCCS
T ss_pred EEECCCCCCeeEEEecCCcEEEccCCCCEeecCCCCCEEec
Confidence 6899999999876 2479999988877655554443
No 179
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.55 E-value=23 Score=23.91 Aligned_cols=37 Identities=22% Similarity=0.465 Sum_probs=20.0
Q ss_pred CCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
..|+-|.+.+.. +.+ ..=|..+|..|| +|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~--~~v--~a~~~~wH~~CF---------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG--RVL--EAGEKHYHPSCA---------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS--CCB--CCSSCCBCTTTS---------CCSSSCCCCC
T ss_pred CCcccCCCEecC--eeE--EeCCCCCCCCcC---------EeCCCCCCCC
Confidence 456666666543 222 223566776654 4556666665
No 180
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=29.54 E-value=41 Score=22.75 Aligned_cols=26 Identities=23% Similarity=0.645 Sum_probs=21.1
Q ss_pred ccCeeEeCCCCccccc-cccCCCCCCC
Q 027385 62 DVKQVICSVCDTEQPV-AQVCTNCGVN 87 (224)
Q Consensus 62 ~~~~vlC~~C~~~q~~-~~~C~~Cg~~ 87 (224)
....++|+.|+...++ +..|-.||..
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp SCCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred HhchhhhccccCcCCcccccccCCCCC
Confidence 4468999999999888 5689888854
No 181
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=29.51 E-value=21 Score=25.92 Aligned_cols=36 Identities=17% Similarity=0.392 Sum_probs=26.1
Q ss_pred CeeEeCCCCccccc------cccCCCCCCCcceeecCccccc
Q 027385 64 KQVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKFY 99 (224)
Q Consensus 64 ~~vlC~~C~~~q~~------~~~C~~Cg~~f~~Y~C~~C~l~ 99 (224)
-.|.|..|..+|.+ ...|..||..++.-.=++-+|.
T Consensus 31 m~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~PTGGKA~l~ 72 (81)
T 2xzm_6 31 MDVKCAQCQNIQMIFSNAQSTIICEKCSAILCKPTGGKVQIQ 72 (81)
T ss_dssp EEEECSSSCCEEEEETTCSSCEECSSSCCEEEEECSSCEEEC
T ss_pred EEeECCCCCCeeEEEecCccEEEccCCCCEEeecCCCCeEec
Confidence 47899999999876 2478899888877654444443
No 182
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=29.40 E-value=41 Score=30.90 Aligned_cols=71 Identities=20% Similarity=0.428 Sum_probs=50.0
Q ss_pred eecCccCccccccccCcceeecCCCCCCCccchhhcccCCCceeEe--ccCCccCHHHHHHHHhc---------CcCCCC
Q 027385 125 FHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVM--KCGHTMHCECYHEMIKR---------DKYCCP 193 (224)
Q Consensus 125 fHC~~C~~C~s~~l~~~H~C~e~~~~~~CpICle~lf~s~~~v~~L--pCGH~~H~~C~~~~l~~---------~~~~CP 193 (224)
|---.|..|...-+.....--+...+.-|-||.+. .+-+.-= .|...|.+.|++.++.. ....|=
T Consensus 68 ~~v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf 143 (386)
T 2pv0_B 68 FEGGICAPCKDKFLDALFLYDDDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCY 143 (386)
T ss_dssp BSSBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCT
T ss_pred cCcchhhHHHHHHhccCcccCCCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEE
Confidence 33446666666655666677788889999999975 2222222 68999999999998831 367788
Q ss_pred CCcccc
Q 027385 194 ICSKSV 199 (224)
Q Consensus 194 iCrksi 199 (224)
+|.-+-
T Consensus 144 ~C~p~p 149 (386)
T 2pv0_B 144 LCLPSS 149 (386)
T ss_dssp TTSSCC
T ss_pred EcCCcc
Confidence 888665
No 183
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=29.37 E-value=30 Score=20.42 Aligned_cols=9 Identities=0% Similarity=0.135 Sum_probs=5.1
Q ss_pred CeeccCCCC
Q 027385 106 GQFHCDDCG 114 (224)
Q Consensus 106 ~~yHC~~Cg 114 (224)
.+|.|+.||
T Consensus 39 k~~~C~~C~ 47 (48)
T 2epr_A 39 KPYSSGPSS 47 (48)
T ss_dssp CCCCSCCCC
T ss_pred CCccCCCCC
Confidence 456666554
No 184
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=29.28 E-value=10 Score=27.47 Aligned_cols=50 Identities=24% Similarity=0.552 Sum_probs=32.6
Q ss_pred CCCCCccchhhcccCCCceeEe---ccCCccCHHHHHHH-HhcCcCCCCCCccccc
Q 027385 149 MHHHCPICYEYLFDSLRNTTVM---KCGHTMHCECYHEM-IKRDKYCCPICSKSVI 200 (224)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~L---pCGH~~H~~C~~~~-l~~~~~~CPiCrksi~ 200 (224)
.+..|.||.+.-.+ ..-.+| .|.=.||..|+..- +-.....||.|.....
T Consensus 24 ~~~~C~vC~~~~s~--~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 24 EDAVCSICMDGESQ--NSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCSSCCSSSSC--SEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCcCCcCCCCCCC--CCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 45679999975212 222233 67889999999753 2235778998876554
No 185
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.13 E-value=28 Score=18.91 Aligned_cols=17 Identities=35% Similarity=0.835 Sum_probs=13.4
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..|.|++|.+++...+.
T Consensus 8 k~~~C~~C~k~f~~~~~ 24 (37)
T 2elo_A 8 RSYSCPVCEKSFSEDRL 24 (37)
T ss_dssp CCCEETTTTEECSSHHH
T ss_pred CCcCCCCCCCccCCHHH
Confidence 46899999999986544
No 186
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=28.70 E-value=32 Score=22.79 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=10.0
Q ss_pred ceeecCccccccCCCCcCeeccCCC
Q 027385 89 GEYFCDICKFYDDDIEKGQFHCDDC 113 (224)
Q Consensus 89 ~~Y~C~~C~l~dd~~~k~~yHC~~C 113 (224)
+..+|.+|..-+++....+.-|+.|
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C 29 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKC 29 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCC
Confidence 3444555544332222334444443
No 187
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=34.43 E-value=12 Score=18.78 Aligned_cols=15 Identities=33% Similarity=0.791 Sum_probs=11.3
Q ss_pred cCCCCCCccccccch
Q 027385 189 KYCCPICSKSVIDMS 203 (224)
Q Consensus 189 ~~~CPiCrksi~dm~ 203 (224)
.|.|++|.+++...+
T Consensus 2 p~~C~~C~k~f~~~~ 16 (26)
T 2lvu_A 2 PYVCERCGKRFVQSS 16 (26)
Confidence 378999999887543
No 188
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.97 E-value=3.7 Score=27.09 Aligned_cols=45 Identities=20% Similarity=0.574 Sum_probs=28.8
Q ss_pred CCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhc---CcCCCCCCc
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR---DKYCCPICS 196 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~---~~~~CPiCr 196 (224)
..+..|.||.+. .+-+.--.|.-.||..|+..-|.. ....||.|.
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 345679999874 222222378899999999854331 356677764
No 189
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.64 E-value=36 Score=19.04 Aligned_cols=18 Identities=28% Similarity=0.672 Sum_probs=14.1
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..|.|++|.+++...+..
T Consensus 9 k~~~C~~C~k~f~~~~~L 26 (42)
T 2yte_A 9 KPYSCAECKETFSDNNRL 26 (42)
T ss_dssp CSCBCTTTCCBCSSHHHH
T ss_pred CCeECCCCCCccCCHHHH
Confidence 468999999999875443
No 190
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=27.41 E-value=13 Score=29.80 Aligned_cols=46 Identities=17% Similarity=0.478 Sum_probs=30.9
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhc---CcCCCCCCcccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR---DKYCCPICSKSV 199 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~---~~~~CPiCrksi 199 (224)
+..|.||.+. ++-+.-=.|.-.||..|+..-+.. +...||.|+...
T Consensus 4 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4568888754 221111257899999999765542 468899998643
No 191
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.29 E-value=50 Score=18.78 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=14.0
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..+.|++|.+++...+..
T Consensus 11 ~~~~C~~C~k~f~~~~~L 28 (44)
T 2eou_A 11 TTSECQECGKIFRHSSLL 28 (44)
T ss_dssp CCCCCTTTCCCCSSHHHH
T ss_pred cCeECCCCCcccCCHHHH
Confidence 468999999999875543
No 192
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=27.20 E-value=50 Score=19.72 Aligned_cols=19 Identities=16% Similarity=0.436 Sum_probs=14.0
Q ss_pred CcCCCCCCccccccchHHH
Q 027385 188 DKYCCPICSKSVIDMSRTW 206 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (224)
..+.||+|.+++...+...
T Consensus 31 ~~~~C~~C~~~f~~~~~l~ 49 (57)
T 3uk3_C 31 KPYKCEFCEYAAAQKTSLR 49 (57)
T ss_dssp CCEECSSSSCEESSHHHHH
T ss_pred CCcCCCCCcchhCCHHHHH
Confidence 4688999999988655433
No 193
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=27.07 E-value=26 Score=25.62 Aligned_cols=32 Identities=28% Similarity=0.569 Sum_probs=23.5
Q ss_pred ccCCccCHHHHHHHHhc--CcCCCCCCccccccc
Q 027385 171 KCGHTMHCECYHEMIKR--DKYCCPICSKSVIDM 202 (224)
Q Consensus 171 pCGH~~H~~C~~~~l~~--~~~~CPiCrksi~dm 202 (224)
.|.-+||..|+..-+.. ..+.||.|+..-.+.
T Consensus 47 ~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~~~~~ 80 (98)
T 2lv9_A 47 KCSVWQHIDCMGIDRQHIPDTYLCERCQPRNLDK 80 (98)
T ss_dssp TTCBEEETTTTTCCTTSCCSSBCCTTTSSSCCCH
T ss_pred CCCCcCcCcCCCCCccCCCCCEECCCCcCCCCCH
Confidence 68999999999753321 368999998665543
No 194
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.97 E-value=26 Score=19.00 Aligned_cols=17 Identities=18% Similarity=0.385 Sum_probs=13.2
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..|.|++|.+.+...+.
T Consensus 8 k~~~C~~C~k~f~~~~~ 24 (36)
T 2els_A 8 KIFTCEYCNKVFKFKHS 24 (36)
T ss_dssp CCEECTTTCCEESSHHH
T ss_pred CCEECCCCCceeCCHHH
Confidence 35889999999886443
No 195
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=26.83 E-value=36 Score=21.57 Aligned_cols=10 Identities=20% Similarity=0.654 Sum_probs=4.8
Q ss_pred cCCCCCCCcc
Q 027385 80 VCTNCGVNMG 89 (224)
Q Consensus 80 ~C~~Cg~~f~ 89 (224)
.|+.||..|.
T Consensus 16 ~C~~C~k~F~ 25 (62)
T 1vd4_A 16 KCPVCSSTFT 25 (62)
T ss_dssp ECSSSCCEEE
T ss_pred cCCCCCchhc
Confidence 3555555443
No 196
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.84 E-value=13 Score=19.02 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=11.9
Q ss_pred cCCCCCCccccccchH
Q 027385 189 KYCCPICSKSVIDMSR 204 (224)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (224)
.|.|++|.+++...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASS 17 (29)
Confidence 3789999998875443
No 197
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=26.80 E-value=84 Score=21.45 Aligned_cols=24 Identities=17% Similarity=0.642 Sum_probs=14.5
Q ss_pred CCCcceeCC-ccceeecCccCcccc
Q 027385 112 DCGICRIGG-RENYFHCKRCGSCYS 135 (224)
Q Consensus 112 ~CgiCR~G~-~~~~fHC~~C~~C~s 135 (224)
.|.||+.+. ..+..-|+.|..-+-
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH 44 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFH 44 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEE
T ss_pred CCcCCCCcCCCCCEEEcCCCCCcee
Confidence 445665543 456788888865443
No 198
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.79 E-value=26 Score=19.01 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=13.2
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..|.|++|.+++...+.
T Consensus 8 k~~~C~~C~k~f~~~~~ 24 (36)
T 2elv_A 8 LLYDCHICERKFKNELD 24 (36)
T ss_dssp CCEECSSSCCEESSHHH
T ss_pred CCeECCCCCCccCCHHH
Confidence 35889999999886543
No 199
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=26.68 E-value=49 Score=27.81 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=43.1
Q ss_pred eeCCccceeecCccCccccccccCcceeecCC---CCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCc----
Q 027385 117 RIGGRENYFHCKRCGSCYSTSLRNNHLCIENS---MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDK---- 189 (224)
Q Consensus 117 R~G~~~~~fHC~~C~~C~s~~l~~~H~C~e~~---~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~---- 189 (224)
+.|.+.....|.+|+.=-+.+.+...+=.... ....|.-|.-.+ +.-.+ =..=++++++.+.
T Consensus 68 ~~~~~~G~K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~l--r~YGI---------T~eey~~L~e~Qg~~~~ 136 (200)
T 3gox_A 68 RTGKGYDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNI--DGVKL---------SSTEKKKMDEIAPPKGS 136 (200)
T ss_dssp GSSTTSSEEECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHH--HCSCC---------CHHHHHHHHTTCCCTTC
T ss_pred eccccCCCeECCCCCCCcchhhhcccccCCCCCcccCccChhhhhcc--CCcCC---------CHHHHHHHHHHcccCCC
Confidence 67778888888888887666655333332223 456788886543 11111 0112455555445
Q ss_pred -CCCCCCccccc
Q 027385 190 -YCCPICSKSVI 200 (224)
Q Consensus 190 -~~CPiCrksi~ 200 (224)
.+||||++...
T Consensus 137 ~G~C~ICg~~~~ 148 (200)
T 3gox_A 137 VFTCPICEKRSI 148 (200)
T ss_dssp EEECTTTCCEEE
T ss_pred CCcCcCCCCCCC
Confidence 67999988765
No 200
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=26.55 E-value=46 Score=19.17 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=14.8
Q ss_pred CcCCCCCCccccccchHHHHH
Q 027385 188 DKYCCPICSKSVIDMSRTWKR 208 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (224)
..+.|++|.+++...+...+-
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2emk_A 11 KPYECKECGKAFSQTTHLIQH 31 (46)
T ss_dssp CSCBCSSSCCBCSCHHHHHHH
T ss_pred CceECCCCCchhCCHHHHHHH
Confidence 458899999998875544433
No 201
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=26.49 E-value=37 Score=22.55 Aligned_cols=14 Identities=43% Similarity=1.196 Sum_probs=8.9
Q ss_pred cceeecCcccc-ccC
Q 027385 88 MGEYFCDICKF-YDD 101 (224)
Q Consensus 88 f~~Y~C~~C~l-~dd 101 (224)
|.+|.|.+|-+ ||.
T Consensus 1 m~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 1 MRKWQCVVCGFIYDE 15 (55)
T ss_dssp CCEEEETTTCCEEET
T ss_pred CCcEEeCCCCeEECC
Confidence 45788888853 443
No 202
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=26.25 E-value=46 Score=19.18 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=13.6
Q ss_pred CcCCCCCCccccccchHHHH
Q 027385 188 DKYCCPICSKSVIDMSRTWK 207 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (224)
..+.|++|.+++...+...+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2ely_A 11 KPFKCVECGKGFSRRSALNV 30 (46)
T ss_dssp CSBCCSSSCCCBSSTTHHHH
T ss_pred CCcccCccCcccCCHHHHHH
Confidence 35788888888876554433
No 203
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=26.25 E-value=52 Score=20.39 Aligned_cols=31 Identities=26% Similarity=0.807 Sum_probs=21.3
Q ss_pred ceeecCccCcccccccc--CcceeecCCCCCCCc
Q 027385 123 NYFHCKRCGSCYSTSLR--NNHLCIENSMHHHCP 154 (224)
Q Consensus 123 ~~fHC~~C~~C~s~~l~--~~H~C~e~~~~~~Cp 154 (224)
+.|.|.. +.|++..+. +.--|..++.+.+|+
T Consensus 11 ~~f~C~~-g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (44)
T 3a7q_B 11 DQFQCRN-ERCIPSVWRCDEDDDCLDHSDEDDCP 43 (44)
T ss_dssp TEEECTT-SCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred CceEcCC-CCEeChhhccCCCCCCCCCccccCCC
Confidence 5788887 888887765 555666667666665
No 204
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.01 E-value=37 Score=23.49 Aligned_cols=31 Identities=13% Similarity=0.027 Sum_probs=19.9
Q ss_pred cCCCCCCccccccchHHHHHHHHHHhcCCCC
Q 027385 189 KYCCPICSKSVIDMSRTWKRIDEEMNSSIFF 219 (224)
Q Consensus 189 ~~~CPiCrksi~dm~~~~~~lD~~i~~~pmp 219 (224)
.|.|++|.+.+...+...+.+-..-...|.+
T Consensus 54 ~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~ 84 (98)
T 2gqj_A 54 ALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD 84 (98)
T ss_dssp HHSCSSSCCCCSCHHHHHHHHHHHSCSCSSC
T ss_pred CEECCCCCCccCCHHHHHHHHHHHcCCCCCC
Confidence 5899999999987655544443333333433
No 205
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=25.87 E-value=41 Score=20.03 Aligned_cols=31 Identities=32% Similarity=0.679 Sum_probs=17.8
Q ss_pred ceeecCccCcccccccc--CcceeecCCCCCCCc
Q 027385 123 NYFHCKRCGSCYSTSLR--NNHLCIENSMHHHCP 154 (224)
Q Consensus 123 ~~fHC~~C~~C~s~~l~--~~H~C~e~~~~~~Cp 154 (224)
+.|.|.. |.|++.++. +.--|..++.+.+||
T Consensus 5 ~~f~C~~-g~Ci~~~~~CDg~~DC~DgsDE~~C~ 37 (37)
T 1ajj_A 5 FEFHCLS-GECIHSSWRCDGGPDCKDKSDEENCA 37 (37)
T ss_dssp TCEECTT-SCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred CceEcCC-CCeechhhccCCCCCCCCCccccCCC
Confidence 4566765 677776553 444455555555554
No 206
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.65 E-value=28 Score=18.70 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=13.2
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..|.|++|.+++...+.
T Consensus 8 k~~~C~~C~k~f~~~~~ 24 (36)
T 2elt_A 8 KPYKCPQCSYASAIKAN 24 (36)
T ss_dssp CSEECSSSSCEESSHHH
T ss_pred CCCCCCCCCcccCCHHH
Confidence 36899999999886443
No 207
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=31.58 E-value=15 Score=18.83 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=12.2
Q ss_pred cCCCCCCccccccchH
Q 027385 189 KYCCPICSKSVIDMSR 204 (224)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (224)
.+.|++|.+++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGA 18 (30)
Confidence 4789999998876443
No 208
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.46 E-value=28 Score=18.83 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=13.3
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..|.|++|.+++...+.
T Consensus 8 k~~~C~~C~k~f~~~~~ 24 (36)
T 2elq_A 8 KPFKCSLCEYATRSKSN 24 (36)
T ss_dssp CSEECSSSSCEESCHHH
T ss_pred CCccCCCCCchhCCHHH
Confidence 35889999999986544
No 209
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.45 E-value=48 Score=18.94 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=12.8
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..+.|++|.+++...+..
T Consensus 11 ~~~~C~~C~k~f~~~~~L 28 (46)
T 2eov_A 11 KPYKCSDCGKSFTWKSRL 28 (46)
T ss_dssp CSCBCSSSCCBCSSHHHH
T ss_pred CCccCCccChhhCCHHHH
Confidence 357888888888765443
No 210
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=24.86 E-value=50 Score=23.24 Aligned_cols=21 Identities=14% Similarity=0.578 Sum_probs=11.1
Q ss_pred cceeCC-ccceeecCccCcccc
Q 027385 115 ICRIGG-RENYFHCKRCGSCYS 135 (224)
Q Consensus 115 iCR~G~-~~~~fHC~~C~~C~s 135 (224)
||+.+. .+....|+.|..-+-
T Consensus 31 vC~~~~d~~~ll~CD~C~~~yH 52 (77)
T 3shb_A 31 LCGGRQDPDKQLMCDECDMAFH 52 (77)
T ss_dssp TTCCCSCGGGEEECTTTCCEEE
T ss_pred ccCCCCCCcceeEeCCCCCccC
Confidence 444443 345666777665443
No 211
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=24.84 E-value=4.5 Score=26.26 Aligned_cols=29 Identities=21% Similarity=0.511 Sum_probs=20.9
Q ss_pred eccCCccCHHHHHHHHh--cCcCCCCCCccc
Q 027385 170 MKCGHTMHCECYHEMIK--RDKYCCPICSKS 198 (224)
Q Consensus 170 LpCGH~~H~~C~~~~l~--~~~~~CPiCrks 198 (224)
-.|.-.||..|+.--.. ...|.||.|+.|
T Consensus 22 d~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~S 52 (52)
T 3o7a_A 22 NECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 52 (52)
T ss_dssp TTTCCEEETTTTTCCGGGCCSSCCCHHHHTC
T ss_pred CCCCccccccccCCCcccCCCcEECcCCCCc
Confidence 36899999999964322 147889988754
No 212
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.75 E-value=57 Score=18.73 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=13.8
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..+.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~F~~~~~L 28 (46)
T 2en9_A 11 KLFKCNECKKTFTQSSSL 28 (46)
T ss_dssp CCCBCTTTCCBCSSHHHH
T ss_pred CCEECCccCcccCCHHHH
Confidence 468999999999865443
No 213
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=24.60 E-value=8.4 Score=30.57 Aligned_cols=49 Identities=24% Similarity=0.440 Sum_probs=29.6
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHH----hcCcCCCCCCcccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMI----KRDKYCCPICSKSV 199 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l----~~~~~~CPiCrksi 199 (224)
..-| ||.....+...-+.-=.|.-+||..|+.--. ....+.||.|+..-
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 3457 7876522222222223688999999995311 12579999998743
No 214
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.55 E-value=43 Score=18.88 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=14.0
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..+.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (44)
T 2en7_A 11 KPYVCNECGKAFRSKSYL 28 (44)
T ss_dssp SSSCCTTTCCCCSSHHHH
T ss_pred cCeECCCCCCccCCHHHH
Confidence 468999999999875443
No 215
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=24.48 E-value=5.6 Score=27.10 Aligned_cols=47 Identities=15% Similarity=0.464 Sum_probs=30.9
Q ss_pred CCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHh---cCcCCCCCCccc
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK---RDKYCCPICSKS 198 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~---~~~~~CPiCrks 198 (224)
..+..|.||.+. .+-+.--.|.-.||..|+..-|. .....||.|...
T Consensus 6 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 346679999864 22222236888999999985333 246779888654
No 216
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.38 E-value=42 Score=19.26 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=14.2
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..|.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~F~~~~~L 28 (47)
T 2epx_A 11 KPYECIECGKAFIQNTSL 28 (47)
T ss_dssp CSBCCSSSCCCBSSHHHH
T ss_pred CCEECCccCchhCChHHH
Confidence 468999999999875543
No 217
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=24.22 E-value=31 Score=18.45 Aligned_cols=17 Identities=18% Similarity=0.567 Sum_probs=13.3
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..|.|++|.+++...+.
T Consensus 6 k~~~C~~C~k~f~~~~~ 22 (35)
T 1srk_A 6 RPFVCRICLSAFTTKAN 22 (35)
T ss_dssp SCEECSSSCCEESSHHH
T ss_pred cCeeCCCCCcccCCHHH
Confidence 46899999999986544
No 218
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.14 E-value=43 Score=19.26 Aligned_cols=18 Identities=39% Similarity=0.691 Sum_probs=13.2
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..+.|++|.+++...+..
T Consensus 11 ~~~~C~~C~k~f~~~~~L 28 (46)
T 2eoq_A 11 KPFKCDICGKSFCGRSRL 28 (46)
T ss_dssp CSCCCSSSCCCCSSHHHH
T ss_pred CCcCCCcCCchhCCHHHH
Confidence 358899999888865443
No 219
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.06 E-value=38 Score=22.79 Aligned_cols=16 Identities=31% Similarity=0.851 Sum_probs=6.7
Q ss_pred CCCCCCCcceeecCccc
Q 027385 81 CTNCGVNMGEYFCDICK 97 (224)
Q Consensus 81 C~~Cg~~f~~Y~C~~C~ 97 (224)
|.-|+. .++|-|+.|.
T Consensus 15 C~vC~~-~~kY~CPrC~ 30 (56)
T 2yqq_A 15 CVICLE-KPKYRCPACR 30 (56)
T ss_dssp CTTTCS-CCSEECTTTC
T ss_pred cCcCcC-CCeeeCCCCC
Confidence 333444 4444444443
No 220
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=24.05 E-value=34 Score=29.77 Aligned_cols=19 Identities=32% Similarity=1.184 Sum_probs=11.9
Q ss_pred ccCCCCCC----------CcceeecCccc
Q 027385 79 QVCTNCGV----------NMGEYFCDICK 97 (224)
Q Consensus 79 ~~C~~Cg~----------~f~~Y~C~~C~ 97 (224)
..||+||. +.|..||+.|+
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~ 63 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHCS 63 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTTC
T ss_pred CcCCCCCChhhhhccCCCcccccccCCcc
Confidence 36777776 34556666664
No 221
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.96 E-value=29 Score=19.47 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=13.5
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..+.|++|.+++...+.
T Consensus 10 k~~~C~~C~k~f~~~~~ 26 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQKGS 26 (42)
T ss_dssp CSBCCTTTTCCBSSHHH
T ss_pred CCeeCCCccchhCCHHH
Confidence 46899999999986543
No 222
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.80 E-value=37 Score=19.09 Aligned_cols=17 Identities=24% Similarity=0.634 Sum_probs=13.6
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..|.|++|.+++...+.
T Consensus 10 k~~~C~~C~k~f~~~~~ 26 (42)
T 2eos_A 10 KPYPCEICGTRFRHLQT 26 (42)
T ss_dssp CCBCCSSSCCCBSSHHH
T ss_pred CCEECCCCCCccCCHHH
Confidence 46899999999986543
No 223
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.75 E-value=45 Score=19.14 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=13.6
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..|.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~F~~~~~ 27 (46)
T 2enf_A 11 KPYKCNECGKVFTQNSH 27 (46)
T ss_dssp CSCBCSSSCCBCSSHHH
T ss_pred cCeECCCCCcccCCHHH
Confidence 46899999999987544
No 224
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.74 E-value=45 Score=19.20 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=14.1
Q ss_pred CcCCCCCCccccccchHHHH
Q 027385 188 DKYCCPICSKSVIDMSRTWK 207 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (224)
..|.|++|.+++...+..-+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2eoo_A 11 RPYGCNECGKNFGRHSHLIE 30 (46)
T ss_dssp CCEECSSSCCEESSHHHHHH
T ss_pred CCEEccccCcccCCHHHHHH
Confidence 35789999998887554433
No 225
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.66 E-value=44 Score=19.19 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=13.4
Q ss_pred CcCCCCCCccccccchHHH
Q 027385 188 DKYCCPICSKSVIDMSRTW 206 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (224)
..|.|++|.+++...+...
T Consensus 11 k~~~C~~C~k~F~~~~~L~ 29 (46)
T 2emy_A 11 NPYECHECGKAFSRKYQLI 29 (46)
T ss_dssp CCEECSSSCCEESSHHHHH
T ss_pred cCcCCCCCCcccCcHHHHH
Confidence 3578999998888654433
No 226
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.62 E-value=55 Score=18.86 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=13.8
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..|.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~F~~~~~L 28 (46)
T 2eom_A 11 RGHRCSDCGKFFLQASNF 28 (46)
T ss_dssp SSCCCSSSCCCCSSHHHH
T ss_pred CCcCCCCCCCeeCChHHH
Confidence 468999999999865443
No 227
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.51 E-value=48 Score=18.96 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=14.4
Q ss_pred CcCCCCCCccccccchHHHH
Q 027385 188 DKYCCPICSKSVIDMSRTWK 207 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (224)
..|.|++|.+++...+..-+
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eor_A 11 KPYNCEECGKAFIHDSQLQE 30 (46)
T ss_dssp CSEECTTTCCEESSHHHHHH
T ss_pred cCccCCCCCCCcCCHHHHHH
Confidence 45889999999886554333
No 228
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.48 E-value=34 Score=22.41 Aligned_cols=37 Identities=22% Similarity=0.516 Sum_probs=21.9
Q ss_pred CCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCccccc
Q 027385 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (224)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~ 200 (224)
..|+.|.+.+.+ +.+ ..=|..+|..|| +|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~--~~~--~a~~~~~H~~CF---------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT--GGV--TYREQPWHKECF---------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS--SEE--ESSSSEEETTTS---------BCSSSCCBCT
T ss_pred CCCcccCCeecc--ceE--EECccccCCCCC---------ccCCCCCcCC
Confidence 457777777643 222 233677777654 5666777764
No 229
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.37 E-value=47 Score=19.06 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=13.8
Q ss_pred CcCCCCCCccccccchHHHH
Q 027385 188 DKYCCPICSKSVIDMSRTWK 207 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (224)
..|.|++|.+++...+..-+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2emp_A 11 KPYMCNECGKAFSVYSSLTT 30 (46)
T ss_dssp CSEECSSSCCEESCHHHHHH
T ss_pred cCeECCCCCchhCCHHHHHH
Confidence 35788888888876554433
No 230
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=23.24 E-value=33 Score=19.20 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=14.0
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..|.|++|.+++...+..
T Consensus 10 ~~~~C~~C~k~f~~~~~l 27 (42)
T 2epc_A 10 TPYLCGQCGKSFTQRGSL 27 (42)
T ss_dssp CCEECSSSCCEESSHHHH
T ss_pred CCeECCCCCcccCCHHHH
Confidence 468999999999875543
No 231
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.21 E-value=48 Score=18.96 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=14.0
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..|.|++|.+++...+..
T Consensus 11 ~~~~C~~C~k~f~~~~~L 28 (46)
T 2eop_A 11 KPHECRECGKSFSFNSQL 28 (46)
T ss_dssp CSCBCTTTCCBCSSHHHH
T ss_pred CCeeCCCCCchhCCHHHH
Confidence 468999999999875443
No 232
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.20 E-value=58 Score=18.64 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=15.0
Q ss_pred CcCCCCCCccccccchHHHHH
Q 027385 188 DKYCCPICSKSVIDMSRTWKR 208 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (224)
..+.|++|.+++...+..-+-
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2en3_A 11 KPFQCKECGMNFSWSCSLFKH 31 (46)
T ss_dssp CSEECSSSCCEESSSHHHHHH
T ss_pred CCeeCcccChhhCCHHHHHHH
Confidence 358899999999875544333
No 233
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.19 E-value=47 Score=19.00 Aligned_cols=17 Identities=29% Similarity=0.638 Sum_probs=13.6
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..+.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2ytr_A 11 KPYKCNECGKAFSQTSK 27 (46)
T ss_dssp CTTCCTTTCCCCSSHHH
T ss_pred cCcCCCCCCCccCCHHH
Confidence 46899999999986544
No 234
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.18 E-value=48 Score=19.02 Aligned_cols=17 Identities=18% Similarity=0.573 Sum_probs=13.5
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..+.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2emg_A 11 NPFICSECGKVFTHKTN 27 (46)
T ss_dssp CSCBCTTTCCBCSSHHH
T ss_pred CCEECCccCcccCCHHH
Confidence 46899999999986544
No 235
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.17 E-value=60 Score=18.64 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=12.2
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..|.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2ytt_A 11 KPYQCSECGKSFSGSYR 27 (46)
T ss_dssp CTTCCSSSCCCCSSHHH
T ss_pred CCeeCCCCCcccCCHHH
Confidence 35788888888876444
No 236
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.05 E-value=36 Score=18.47 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=13.9
Q ss_pred CcCCCCCCccccccc-hHH
Q 027385 188 DKYCCPICSKSVIDM-SRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm-~~~ 205 (224)
..+.|++|.+++... +..
T Consensus 8 k~~~C~~C~k~f~~~~~~L 26 (37)
T 2elp_A 8 RAMKCPYCDFYFMKNGSDL 26 (37)
T ss_dssp CCEECSSSSCEECSSCHHH
T ss_pred CCeECCCCChhhccCHHHH
Confidence 358899999999875 543
No 237
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.99 E-value=47 Score=19.14 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=14.6
Q ss_pred CcCCCCCCccccccchHHH
Q 027385 188 DKYCCPICSKSVIDMSRTW 206 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (224)
..|.|++|.+++...+...
T Consensus 11 k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2eoh_A 11 KPYECKECRKTFIQIGHLN 29 (46)
T ss_dssp CSCCCSSSCCCCSSHHHHH
T ss_pred CCcCCCCcCchhCCHHHHH
Confidence 4689999999998755433
No 238
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.88 E-value=48 Score=19.08 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=12.9
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..+.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (46)
T 2em8_A 11 KPYKCVECGKGYKRRLDL 28 (46)
T ss_dssp CSEECSSSCCEESSHHHH
T ss_pred CCeECcccCchhCCHHHH
Confidence 357888888888765443
No 239
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.83 E-value=47 Score=19.05 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=13.6
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..|.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~F~~~~~ 27 (46)
T 2yti_A 11 KPYKCNECGKVFTQNSH 27 (46)
T ss_dssp CTTCCSSSCCCCSSHHH
T ss_pred cCeECCCCCcccCChhH
Confidence 46899999999986544
No 240
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=22.80 E-value=46 Score=19.92 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=13.7
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..+.|++|.+++...+..
T Consensus 28 ~~~~C~~C~~~f~~~~~l 45 (57)
T 1bbo_A 28 RPYHCTYCNFSFKTKGNL 45 (57)
T ss_dssp CCEECSSSSCEESSHHHH
T ss_pred CCccCCCCCchhcCHHHH
Confidence 358899999999865443
No 241
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=22.65 E-value=49 Score=20.49 Aligned_cols=10 Identities=50% Similarity=1.358 Sum_probs=5.3
Q ss_pred cCeeccCCCC
Q 027385 105 KGQFHCDDCG 114 (224)
Q Consensus 105 k~~yHC~~Cg 114 (224)
|+-|.|..||
T Consensus 26 ~qg~~C~~C~ 35 (50)
T 1ptq_A 26 KQGLKCEDCG 35 (50)
T ss_dssp SCEEEETTTC
T ss_pred CccCEeCCCC
Confidence 4555555554
No 242
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=22.62 E-value=30 Score=28.21 Aligned_cols=11 Identities=27% Similarity=0.277 Sum_probs=7.8
Q ss_pred ccCCCCCCCcc
Q 027385 79 QVCTNCGVNMG 89 (224)
Q Consensus 79 ~~C~~Cg~~f~ 89 (224)
..|++|++.+-
T Consensus 43 ~ACp~CnKKV~ 53 (172)
T 3u50_C 43 YRCTCQGKSVL 53 (172)
T ss_dssp EECTTSCCCEE
T ss_pred hhchhhCCEee
Confidence 57888877663
No 243
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.45 E-value=51 Score=18.90 Aligned_cols=18 Identities=33% Similarity=0.748 Sum_probs=12.9
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..|.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~F~~~~~L 28 (46)
T 2emh_A 11 RPYICTVCGKAFTDRSNL 28 (46)
T ss_dssp CSEECTTTCCEESSHHHH
T ss_pred CCcCCCCCCchhCCHHHH
Confidence 357888888888765443
No 244
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.35 E-value=45 Score=22.96 Aligned_cols=9 Identities=33% Similarity=1.158 Sum_probs=5.5
Q ss_pred CeeccCCCC
Q 027385 106 GQFHCDDCG 114 (224)
Q Consensus 106 ~~yHC~~Cg 114 (224)
++..|+.||
T Consensus 37 ~~iRC~~CG 45 (63)
T 3h0g_L 37 EVIRCRECG 45 (63)
T ss_dssp SCCCCSSSC
T ss_pred CceECCCCC
Confidence 455666666
No 245
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=22.35 E-value=38 Score=29.19 Aligned_cols=19 Identities=32% Similarity=1.057 Sum_probs=14.2
Q ss_pred cccCCCCCCCc--------ceeecCcc
Q 027385 78 AQVCTNCGVNM--------GEYFCDIC 96 (224)
Q Consensus 78 ~~~C~~Cg~~f--------~~Y~C~~C 96 (224)
++.|+.||... +.|||+.|
T Consensus 245 g~pC~~CG~~I~~~~~~gR~t~~CP~C 271 (273)
T 3u6p_A 245 GNPCKRCGTPIEKTVVAGRGTHYCPRC 271 (273)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred cCCCCCCCCeEEEEEECCCCeEECCCC
Confidence 36899999887 46777766
No 246
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=22.16 E-value=36 Score=18.88 Aligned_cols=18 Identities=17% Similarity=0.562 Sum_probs=13.7
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..+.|++|.+++...+..
T Consensus 5 k~~~C~~C~k~f~~~~~L 22 (39)
T 1njq_A 5 RSYTCSFCKREFRSAQAL 22 (39)
T ss_dssp SSEECTTTCCEESSHHHH
T ss_pred CceECCCCCcccCCHHHH
Confidence 358999999999865443
No 247
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=21.94 E-value=43 Score=24.08 Aligned_cols=9 Identities=33% Similarity=1.095 Sum_probs=4.7
Q ss_pred ceeecCccC
Q 027385 123 NYFHCKRCG 131 (224)
Q Consensus 123 ~~fHC~~C~ 131 (224)
-+|+|..|+
T Consensus 60 ~~Y~C~~C~ 68 (89)
T 1v5n_A 60 WSYHCDECD 68 (89)
T ss_dssp CEEECTTTC
T ss_pred cEEEcCCCC
Confidence 355555554
No 248
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.89 E-value=47 Score=18.86 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=13.9
Q ss_pred CcCCCCCCccccccchHHH
Q 027385 188 DKYCCPICSKSVIDMSRTW 206 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (224)
..+.|++|.+++...+..-
T Consensus 9 k~~~C~~C~k~f~~~~~L~ 27 (44)
T 2emx_A 9 KPFGCSCCEKAFSSKSYLL 27 (44)
T ss_dssp CCEECSSSSCEESSHHHHH
T ss_pred cCccCCCCCcccCCHHHHH
Confidence 3578999999988755443
No 249
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.86 E-value=40 Score=19.51 Aligned_cols=17 Identities=29% Similarity=0.622 Sum_probs=13.6
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..|.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2eon_A 11 KPYKCQVCGKAFRVSSH 27 (46)
T ss_dssp CSCBCSSSCCBCSSHHH
T ss_pred cccCCCCCCcccCcHHH
Confidence 46899999999987543
No 250
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=21.71 E-value=50 Score=19.01 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=14.1
Q ss_pred CcCCCCCCccccccchHHH
Q 027385 188 DKYCCPICSKSVIDMSRTW 206 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (224)
..|.|++|.+++...+..-
T Consensus 11 k~~~C~~C~k~F~~~~~L~ 29 (46)
T 2emj_A 11 KPFECAECGKSFSISSQLA 29 (46)
T ss_dssp CSEECSSSSCEESSHHHHH
T ss_pred CCEECCCCCcccCCHHHHH
Confidence 4688999999998654433
No 251
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=21.64 E-value=41 Score=28.93 Aligned_cols=20 Identities=35% Similarity=1.225 Sum_probs=14.8
Q ss_pred cccCCCCCCCc--------ceeecCccc
Q 027385 78 AQVCTNCGVNM--------GEYFCDICK 97 (224)
Q Consensus 78 ~~~C~~Cg~~f--------~~Y~C~~C~ 97 (224)
++.|+.||... +.|||+.|.
T Consensus 242 G~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 242 GEKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 36799998887 567777773
No 252
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=21.51 E-value=41 Score=28.75 Aligned_cols=20 Identities=30% Similarity=0.901 Sum_probs=14.5
Q ss_pred cccCCCCCCCc--------ceeecCccc
Q 027385 78 AQVCTNCGVNM--------GEYFCDICK 97 (224)
Q Consensus 78 ~~~C~~Cg~~f--------~~Y~C~~C~ 97 (224)
++.|+.||... +.|||+.|.
T Consensus 234 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 234 GEPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred cCCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 35799998877 567777763
No 253
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=21.50 E-value=66 Score=20.17 Aligned_cols=7 Identities=43% Similarity=1.160 Sum_probs=3.8
Q ss_pred cCCCCCC
Q 027385 80 VCTNCGV 86 (224)
Q Consensus 80 ~C~~Cg~ 86 (224)
.||.||.
T Consensus 7 ~CP~C~~ 13 (50)
T 1pft_A 7 VCPACES 13 (50)
T ss_dssp SCTTTSC
T ss_pred eCcCCCC
Confidence 4555554
No 254
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.46 E-value=32 Score=19.75 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=13.9
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..|.|++|.+.+...+..
T Consensus 11 k~~~C~~C~k~F~~~~~L 28 (44)
T 2epv_A 11 KPYECNECGKAFIWKSLL 28 (44)
T ss_dssp CSEECSSSCCEESSHHHH
T ss_pred cCeECCCCCcccCchHHH
Confidence 468999999999875443
No 255
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.41 E-value=54 Score=18.85 Aligned_cols=17 Identities=29% Similarity=0.638 Sum_probs=13.6
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..+.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2em6_A 11 KCYKCDVCGKEFSQSSH 27 (46)
T ss_dssp CCCBCSSSCCBCSSHHH
T ss_pred CCeECCCCCcccCCHHH
Confidence 46899999999986544
No 256
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.40 E-value=46 Score=19.03 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=15.0
Q ss_pred CcCCCCCCccccccchHHHHH
Q 027385 188 DKYCCPICSKSVIDMSRTWKR 208 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~ 208 (224)
..+.|++|.+++...+..-+-
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2eow_A 11 KPYKCNECGKAFRARSSLAIH 31 (46)
T ss_dssp CCEECTTSCCEESSHHHHHHH
T ss_pred CCeeccccCChhcCHHHHHHH
Confidence 458899999999875544333
No 257
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.39 E-value=44 Score=23.15 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=27.3
Q ss_pred CCCCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
.....|..|.+.+.. +.+ ..=|..+|..|| +|-.|++.|.+
T Consensus 23 ~~~~~C~~C~~~I~~--~~~--~a~~~~~H~~CF---------~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG--AVV--KARDKYRHPECF---------VCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCS--CCE--ESSSCEECTTTC---------CCSSSCCCTTT
T ss_pred CcCCCcccCCCEecc--cEE--EECCceECccCC---------EecCCCCCCCC
Confidence 334568888888664 222 234688888775 57778888764
No 258
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.34 E-value=45 Score=19.14 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=13.7
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..|.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2eq2_A 11 KPYQCNECGKAFSQTSK 27 (46)
T ss_dssp CSSSCCSSCCCCSSHHH
T ss_pred CCeECCCCCcccCCHHH
Confidence 46899999999987544
No 259
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.28 E-value=54 Score=18.79 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=13.5
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..+.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2epz_A 11 KPFDCIDCGKAFSDHIG 27 (46)
T ss_dssp CSBCCTTTCCCBSSHHH
T ss_pred CCeECCCCCceeCCHHH
Confidence 46899999999986543
No 260
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.15 E-value=38 Score=19.52 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=13.6
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..+.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2ene_A 11 KPYKCNECGKVFRHNSY 27 (46)
T ss_dssp SSEECSSSCCEESSHHH
T ss_pred CCeECCCCCchhCChHH
Confidence 46899999999987544
No 261
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=21.12 E-value=42 Score=28.81 Aligned_cols=20 Identities=25% Similarity=1.034 Sum_probs=14.7
Q ss_pred cccCCCCCCCc--------ceeecCccc
Q 027385 78 AQVCTNCGVNM--------GEYFCDICK 97 (224)
Q Consensus 78 ~~~C~~Cg~~f--------~~Y~C~~C~ 97 (224)
++.|+.||... +.|||+.|.
T Consensus 240 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 240 GEPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 36799999887 567777763
No 262
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.02 E-value=55 Score=18.80 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=13.5
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..|.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2ytq_A 11 KPYGCSECGKAFSSKSY 27 (46)
T ss_dssp CSCBCSSSCCBCSCHHH
T ss_pred CCcCCCccChhhCChHH
Confidence 46899999999986543
No 263
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=20.96 E-value=43 Score=28.78 Aligned_cols=20 Identities=35% Similarity=0.994 Sum_probs=14.6
Q ss_pred cccCCCCCCCc--------ceeecCccc
Q 027385 78 AQVCTNCGVNM--------GEYFCDICK 97 (224)
Q Consensus 78 ~~~C~~Cg~~f--------~~Y~C~~C~ 97 (224)
++.|+.||... +.|||+.|.
T Consensus 235 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 262 (266)
T 1ee8_A 235 GLPCPACGRPVERRVVAGRGTHFCPTCQ 262 (266)
T ss_dssp TSBCTTTCCBCEEEESSSCEEEECTTTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 36789998877 567777774
No 264
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.86 E-value=56 Score=18.65 Aligned_cols=17 Identities=41% Similarity=0.725 Sum_probs=13.6
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..+.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2ep1_A 11 KPYECSDCGKSFIKKSQ 27 (46)
T ss_dssp CSSCCSSSCCCCSSHHH
T ss_pred CCcCCCCCCchhCCHHH
Confidence 46899999999986544
No 265
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.73 E-value=56 Score=18.70 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=13.5
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..+.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2eq1_A 11 KPYKCNECGKAFRAHSN 27 (46)
T ss_dssp CCCCCTTTTCCCSSHHH
T ss_pred CCeECCcCChhhCCHHH
Confidence 46899999999986543
No 266
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.71 E-value=49 Score=19.06 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=14.0
Q ss_pred CcCCCCCCccccccchHHH
Q 027385 188 DKYCCPICSKSVIDMSRTW 206 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (224)
..|.|++|.+++...+..-
T Consensus 11 k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2em4_A 11 RPYECIECGKAFKTKSSLI 29 (46)
T ss_dssp SSEECSSSCCEESSHHHHH
T ss_pred cCcCCCCCCCccCCHHHHH
Confidence 4688999999998655433
No 267
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.65 E-value=41 Score=19.29 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=13.6
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..+.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2eq3_A 11 KPYECNQCGKAFSVRSS 27 (46)
T ss_dssp CSSEETTTTEECSSHHH
T ss_pred CCeECCCCChhhCCHHH
Confidence 46899999999986544
No 268
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.57 E-value=46 Score=18.62 Aligned_cols=18 Identities=17% Similarity=0.606 Sum_probs=13.8
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..|.|++|.+++...+..
T Consensus 10 k~~~C~~C~k~f~~~~~L 27 (42)
T 2en2_A 10 KPYKCETCGARFVQVAHL 27 (42)
T ss_dssp CSEECTTTCCEESSHHHH
T ss_pred CCEeCCCcChhhCCHHHH
Confidence 468999999999865443
No 269
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=20.49 E-value=20 Score=24.42 Aligned_cols=40 Identities=20% Similarity=0.588 Sum_probs=22.5
Q ss_pred CCCCccchhhcccCCCceeEeccCCccCHHHHHHHHhcCcCCCCCCcccccc
Q 027385 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (224)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~d 201 (224)
...|+.|.+.+... +.+ ..=|..+|..|| +|-.|+++|.+
T Consensus 7 ~~~C~~C~~~I~~~-~~~--~a~~~~~H~~CF---------~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHA-EEV--QCDGRSFHRCCF---------LCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSST-TEE--EETTEEEESSSE---------ECSSSCCEECS
T ss_pred CCcCcCcCccccCc-eeE--EeCCcccccccC---------ccCCCCCCCCC
Confidence 34577777775432 222 224667776654 46667776654
No 270
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.44 E-value=48 Score=19.03 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=14.6
Q ss_pred CcCCCCCCccccccchHHHH
Q 027385 188 DKYCCPICSKSVIDMSRTWK 207 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (224)
..|.|++|.+++...+..-+
T Consensus 11 ~~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2em3_A 11 KPYECKVCSKAFTQKAHLAQ 30 (46)
T ss_dssp CSEECSSSCCEESSHHHHHH
T ss_pred cCeECCCCCcccCCHHHHHH
Confidence 45889999999987554433
No 271
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.42 E-value=40 Score=19.47 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=14.0
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..|.|++|.+++...+..
T Consensus 11 ~~~~C~~C~k~f~~~~~L 28 (46)
T 2em5_A 11 KSHQCHECGRGFTLKSHL 28 (46)
T ss_dssp CSEECSSSCCEESSHHHH
T ss_pred CCeECCcCCCccCCHHHH
Confidence 468999999999875543
No 272
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.34 E-value=58 Score=18.56 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=14.1
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..+.|++|.+++...+..
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (46)
T 2eq4_A 11 KLYNCKECGKSFSRAPCL 28 (46)
T ss_dssp CCCCBTTTTBCCSCHHHH
T ss_pred CCeECCCCCCccCchHHH
Confidence 468999999999875443
No 273
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.34 E-value=41 Score=19.04 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=13.4
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..+.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (44)
T 2eoj_A 11 NPYECCECGKVFSRKDQ 27 (44)
T ss_dssp CSCEETTTTEECSSHHH
T ss_pred cCeeCCCCCCccCCHHH
Confidence 46899999999986543
No 274
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.29 E-value=50 Score=18.93 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=13.0
Q ss_pred CcCCCCCCccccccchHHH
Q 027385 188 DKYCCPICSKSVIDMSRTW 206 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (224)
..+.|++|.+++...+..-
T Consensus 11 k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2yu8_A 11 KPYKCNECGKVFTQNSHLA 29 (46)
T ss_dssp SSEECSSSCCEESSSHHHH
T ss_pred CCeECCcCCchhCCHHHHH
Confidence 3578888888887655433
No 275
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=20.27 E-value=45 Score=24.15 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=16.8
Q ss_pred eeEeCCCCccccccccCCCCCCC
Q 027385 65 QVICSVCDTEQPVAQVCTNCGVN 87 (224)
Q Consensus 65 ~vlC~~C~~~q~~~~~C~~Cg~~ 87 (224)
.-.|..|+..++.. .||+||..
T Consensus 23 ~rAC~~C~~v~~~d-~CPnCgs~ 44 (81)
T 3p8b_A 23 EKACRHCHYITSED-RCPVCGSR 44 (81)
T ss_dssp CEEETTTCBEESSS-SCTTTCCC
T ss_pred HHHHhhCCCccCCC-CCCCCCCC
Confidence 34699999987664 69999863
No 276
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.18 E-value=68 Score=22.23 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=20.4
Q ss_pred CcCCCCCCccccccchHHHHHHHHHHhcCCCC
Q 027385 188 DKYCCPICSKSVIDMSRTWKRIDEEMNSSIFF 219 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~lD~~i~~~pmp 219 (224)
..|.|++|.+++...+...+-+-..-..+.+|
T Consensus 79 ~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~ 110 (115)
T 2dmi_A 79 KVLKCMYCGHSFESLQDLSVHMIKTKHYQKVS 110 (115)
T ss_dssp SSCBCSSSCCBCSSHHHHHHHHHHTTTTTCSC
T ss_pred cceECCCCCCccCCHHHHHHHHHHhCCcccCC
Confidence 46899999999987665554443333333443
No 277
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.13 E-value=53 Score=18.88 Aligned_cols=17 Identities=24% Similarity=0.637 Sum_probs=13.6
Q ss_pred CcCCCCCCccccccchH
Q 027385 188 DKYCCPICSKSVIDMSR 204 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (224)
..|.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~F~~~~~ 27 (46)
T 2enh_A 11 KPYECDVCRKAFSHHAS 27 (46)
T ss_dssp SSCBCTTTCCBCSSSHH
T ss_pred CCcCCCCcCchhCCHHH
Confidence 46899999999986544
No 278
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.09 E-value=51 Score=18.89 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=13.0
Q ss_pred CcCCCCCCccccccchHH
Q 027385 188 DKYCCPICSKSVIDMSRT 205 (224)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (224)
..|.|++|.+++...+..
T Consensus 11 ~~~~C~~C~k~f~~~~~L 28 (46)
T 2yso_A 11 KSHQCRECGEIFFQYVSL 28 (46)
T ss_dssp CCEECTTTCCEESSHHHH
T ss_pred CCEEccccChhhCCHHHH
Confidence 357889999888865443
Done!