Query 027386
Match_columns 224
No_of_seqs 135 out of 1850
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 09:11:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0034 Ca2+/calmodulin-depend 100.0 6.3E-27 1.4E-31 178.5 19.0 182 16-204 1-187 (187)
2 COG5126 FRQ1 Ca2+-binding prot 99.9 8.1E-26 1.8E-30 167.0 16.9 151 33-195 8-159 (160)
3 KOG0044 Ca2+ sensor (EF-Hand s 99.9 9.1E-26 2E-30 172.2 16.9 169 28-202 12-185 (193)
4 KOG0027 Calmodulin and related 99.9 3.9E-21 8.4E-26 143.9 16.7 143 39-192 2-149 (151)
5 PTZ00183 centrin; Provisional 99.9 1.5E-20 3.4E-25 141.3 17.8 148 37-195 9-157 (158)
6 PTZ00184 calmodulin; Provision 99.8 2.6E-19 5.6E-24 133.1 17.5 144 38-192 4-148 (149)
7 KOG0038 Ca2+-binding kinase in 99.8 1E-19 2.3E-24 129.8 12.4 174 25-202 8-187 (189)
8 KOG0028 Ca2+-binding protein ( 99.8 2.6E-18 5.7E-23 124.6 15.6 146 37-193 25-171 (172)
9 KOG0031 Myosin regulatory ligh 99.8 1.2E-17 2.6E-22 120.4 15.9 140 38-192 25-165 (171)
10 KOG0037 Ca2+-binding protein, 99.7 9.9E-16 2.1E-20 117.0 14.4 140 43-200 55-196 (221)
11 KOG0030 Myosin essential light 99.7 1.8E-15 3.8E-20 107.5 12.4 142 38-191 4-150 (152)
12 KOG0036 Predicted mitochondria 99.6 4.2E-14 9.2E-19 117.0 14.4 138 41-195 10-149 (463)
13 PF13499 EF-hand_7: EF-hand do 99.4 1.2E-12 2.7E-17 83.8 7.6 66 120-190 1-66 (66)
14 PLN02964 phosphatidylserine de 99.4 1.3E-11 2.7E-16 110.3 14.5 136 27-170 123-275 (644)
15 KOG2562 Protein phosphatase 2 99.3 3.6E-11 7.8E-16 101.2 11.3 145 38-188 271-420 (493)
16 KOG0377 Protein serine/threoni 99.2 1.9E-10 4.1E-15 96.4 11.8 138 45-192 464-615 (631)
17 KOG0027 Calmodulin and related 99.2 2.9E-10 6.2E-15 85.0 11.5 105 83-193 9-114 (151)
18 KOG4223 Reticulocalbin, calume 99.2 1.5E-10 3.2E-15 93.7 10.3 136 42-188 160-301 (325)
19 cd05022 S-100A13 S-100A13: S-1 99.2 8.4E-11 1.8E-15 79.5 7.4 65 119-192 8-75 (89)
20 KOG4223 Reticulocalbin, calume 99.2 4E-10 8.6E-15 91.2 12.2 153 30-194 64-230 (325)
21 PTZ00184 calmodulin; Provision 99.1 1.1E-09 2.4E-14 81.0 11.8 100 84-192 13-112 (149)
22 PTZ00183 centrin; Provisional 99.1 2.2E-09 4.7E-14 80.4 12.8 100 84-192 19-118 (158)
23 cd05027 S-100B S-100B: S-100B 99.1 6.8E-10 1.5E-14 75.1 8.4 69 119-192 8-79 (88)
24 KOG0044 Ca2+ sensor (EF-Hand s 99.1 3.1E-09 6.7E-14 81.6 12.2 123 63-195 8-131 (193)
25 KOG0037 Ca2+-binding protein, 99.1 1.5E-09 3.4E-14 83.3 9.8 122 5-145 93-217 (221)
26 COG5126 FRQ1 Ca2+-binding prot 99.0 1.1E-08 2.3E-13 76.2 12.0 100 84-193 22-121 (160)
27 cd05026 S-100Z S-100Z: S-100Z 99.0 3.9E-09 8.5E-14 72.2 8.5 69 119-192 10-81 (93)
28 smart00027 EH Eps15 homology d 99.0 5.7E-09 1.2E-13 71.9 8.9 85 118-219 9-93 (96)
29 cd05031 S-100A10_like S-100A10 98.9 5.4E-09 1.2E-13 71.7 8.1 70 118-192 7-79 (94)
30 cd05025 S-100A1 S-100A1: S-100 98.9 9.6E-09 2.1E-13 70.2 8.9 72 118-194 8-82 (92)
31 PF13499 EF-hand_7: EF-hand do 98.9 2.5E-09 5.5E-14 68.3 5.5 61 46-108 1-66 (66)
32 cd05022 S-100A13 S-100A13: S-1 98.9 8.7E-09 1.9E-13 69.7 7.8 69 42-112 5-77 (89)
33 cd05029 S-100A6 S-100A6: S-100 98.9 1E-08 2.2E-13 69.3 7.8 67 120-192 11-79 (88)
34 smart00027 EH Eps15 homology d 98.9 1.8E-08 3.9E-13 69.4 8.6 72 38-112 3-74 (96)
35 cd00052 EH Eps15 homology doma 98.8 1.5E-08 3.2E-13 64.7 6.9 62 122-194 2-63 (67)
36 KOG4666 Predicted phosphate ac 98.8 2E-08 4.4E-13 81.3 8.4 153 34-200 215-367 (412)
37 KOG0028 Ca2+-binding protein ( 98.8 1E-07 2.3E-12 69.8 10.9 101 84-193 35-135 (172)
38 cd05026 S-100Z S-100Z: S-100Z 98.8 3.8E-08 8.3E-13 67.3 8.3 68 43-112 8-83 (93)
39 cd00213 S-100 S-100: S-100 dom 98.8 5.1E-08 1.1E-12 66.0 8.5 70 118-192 7-79 (88)
40 cd05027 S-100B S-100B: S-100B 98.8 4.1E-08 8.9E-13 66.4 7.9 68 43-112 6-81 (88)
41 PF13833 EF-hand_8: EF-hand do 98.8 2.6E-08 5.7E-13 60.9 6.0 52 132-192 1-53 (54)
42 PLN02964 phosphatidylserine de 98.8 9.6E-08 2.1E-12 85.7 12.0 120 62-193 119-244 (644)
43 KOG0034 Ca2+/calmodulin-depend 98.7 9.2E-08 2E-12 73.4 9.3 97 48-147 69-174 (187)
44 cd05023 S-100A11 S-100A11: S-1 98.7 1.1E-07 2.4E-12 64.4 8.5 69 119-192 9-80 (89)
45 cd00252 SPARC_EC SPARC_EC; ext 98.7 7.2E-08 1.6E-12 68.4 7.6 63 117-192 46-108 (116)
46 cd00051 EFh EF-hand, calcium b 98.7 1.3E-07 2.7E-12 58.6 7.8 61 121-190 2-62 (63)
47 cd05029 S-100A6 S-100A6: S-100 98.7 1.5E-07 3.2E-12 63.7 8.3 68 42-111 7-80 (88)
48 cd00213 S-100 S-100: S-100 dom 98.7 1.3E-07 2.8E-12 63.9 7.8 69 41-111 4-80 (88)
49 cd00052 EH Eps15 homology doma 98.7 1.4E-07 3E-12 60.1 7.1 61 48-111 2-62 (67)
50 KOG0040 Ca2+-binding actin-bun 98.6 1.7E-06 3.7E-11 82.0 16.1 140 37-191 2245-2397(2399)
51 cd05023 S-100A11 S-100A11: S-1 98.6 2.4E-07 5.2E-12 62.7 7.9 69 42-112 6-82 (89)
52 cd05025 S-100A1 S-100A1: S-100 98.6 2.2E-07 4.8E-12 63.4 7.3 68 43-112 7-82 (92)
53 PF14658 EF-hand_9: EF-hand do 98.6 2.8E-07 6.2E-12 57.9 6.8 61 123-192 2-64 (66)
54 cd00252 SPARC_EC SPARC_EC; ext 98.6 4.9E-07 1.1E-11 64.2 8.1 64 40-108 43-106 (116)
55 cd05031 S-100A10_like S-100A10 98.5 4.9E-07 1.1E-11 61.9 7.9 65 44-110 7-79 (94)
56 KOG2643 Ca2+ binding protein, 98.5 7.4E-07 1.6E-11 75.1 9.7 133 44-192 317-453 (489)
57 KOG0036 Predicted mitochondria 98.5 1.6E-06 3.5E-11 72.7 11.2 118 83-214 15-139 (463)
58 cd05024 S-100A10 S-100A10: A s 98.5 1.2E-06 2.6E-11 59.0 8.5 68 42-112 5-78 (91)
59 KOG4251 Calcium binding protei 98.5 8.8E-07 1.9E-11 69.4 8.0 146 43-191 99-308 (362)
60 cd05030 calgranulins Calgranul 98.4 1.3E-06 2.9E-11 59.0 7.2 66 119-192 8-79 (88)
61 cd00051 EFh EF-hand, calcium b 98.4 2.3E-06 4.9E-11 52.8 7.5 57 86-144 4-60 (63)
62 KOG0031 Myosin regulatory ligh 98.4 2.9E-06 6.2E-11 61.9 8.5 71 118-193 31-130 (171)
63 PF13833 EF-hand_8: EF-hand do 98.3 1.2E-06 2.6E-11 53.4 5.2 49 61-109 2-52 (54)
64 KOG0041 Predicted Ca2+-binding 98.3 5.1E-06 1.1E-10 63.2 9.0 108 35-145 89-200 (244)
65 cd05030 calgranulins Calgranul 98.3 3.4E-06 7.3E-11 57.0 7.3 71 42-112 5-81 (88)
66 KOG0751 Mitochondrial aspartat 98.3 1.8E-05 3.9E-10 67.9 13.0 150 37-192 28-207 (694)
67 PF00036 EF-hand_1: EF hand; 98.2 1.6E-06 3.4E-11 45.7 3.2 26 121-147 2-27 (29)
68 KOG2643 Ca2+ binding protein, 98.2 3.2E-05 6.8E-10 65.5 12.3 134 45-192 233-384 (489)
69 KOG0041 Predicted Ca2+-binding 98.2 7.9E-06 1.7E-10 62.2 7.1 65 119-192 99-163 (244)
70 PF12763 EF-hand_4: Cytoskelet 98.1 4.9E-06 1.1E-10 57.9 5.1 69 39-111 4-72 (104)
71 KOG0030 Myosin essential light 98.1 3.8E-05 8.1E-10 55.2 9.3 105 82-193 11-117 (152)
72 cd05024 S-100A10 S-100A10: A s 98.1 4.3E-05 9.2E-10 51.5 8.6 68 119-192 8-76 (91)
73 PRK12309 transaldolase/EF-hand 98.1 3.9E-05 8.5E-10 65.6 10.1 72 99-192 313-385 (391)
74 PF00036 EF-hand_1: EF hand; 98.1 6.8E-06 1.5E-10 43.3 3.4 27 84-110 2-28 (29)
75 PF13405 EF-hand_6: EF-hand do 97.9 1.4E-05 3E-10 42.8 3.2 27 120-147 1-27 (31)
76 KOG4251 Calcium binding protei 97.9 5.9E-05 1.3E-09 59.4 7.5 136 44-189 197-342 (362)
77 KOG0038 Ca2+-binding kinase in 97.9 9.1E-05 2E-09 53.7 7.5 96 49-147 75-176 (189)
78 KOG0046 Ca2+-binding actin-bun 97.8 7.3E-05 1.6E-09 64.7 7.3 76 35-113 9-88 (627)
79 PF14658 EF-hand_9: EF-hand do 97.7 0.00012 2.5E-09 46.1 5.6 58 50-109 3-63 (66)
80 PRK12309 transaldolase/EF-hand 97.7 0.00018 3.8E-09 61.7 8.4 54 81-149 333-386 (391)
81 PF13202 EF-hand_5: EF hand; P 97.7 4.8E-05 1E-09 38.6 3.0 24 121-145 1-24 (25)
82 KOG0169 Phosphoinositide-speci 97.7 0.0014 3E-08 59.5 13.6 168 38-215 129-298 (746)
83 KOG4065 Uncharacterized conser 97.6 0.00021 4.5E-09 49.7 6.2 65 124-189 72-142 (144)
84 KOG0040 Ca2+-binding actin-bun 97.6 0.00057 1.2E-08 65.7 10.7 111 60-191 2244-2360(2399)
85 KOG1029 Endocytic adaptor prot 97.6 0.0012 2.6E-08 59.8 11.8 138 39-191 10-256 (1118)
86 PF13202 EF-hand_5: EF hand; P 97.6 0.0001 2.2E-09 37.4 3.1 24 167-190 2-25 (25)
87 KOG0751 Mitochondrial aspartat 97.5 0.00078 1.7E-08 58.2 8.5 64 118-189 178-241 (694)
88 PF10591 SPARC_Ca_bdg: Secrete 97.4 0.00013 2.7E-09 51.7 2.8 64 40-106 49-112 (113)
89 PF12763 EF-hand_4: Cytoskelet 97.3 0.0013 2.8E-08 45.8 7.1 65 116-192 7-71 (104)
90 KOG4347 GTPase-activating prot 97.3 0.00092 2E-08 59.5 7.2 110 30-142 489-612 (671)
91 PF13405 EF-hand_6: EF-hand do 97.1 0.00045 9.9E-09 36.8 2.5 26 47-74 2-27 (31)
92 KOG0377 Protein serine/threoni 97.1 0.0015 3.3E-08 55.7 6.8 65 84-149 549-616 (631)
93 PF14788 EF-hand_10: EF hand; 97.0 0.0018 4E-08 38.5 4.7 47 64-110 2-49 (51)
94 PF14788 EF-hand_10: EF hand; 96.9 0.0039 8.5E-08 37.1 5.3 48 137-192 2-49 (51)
95 KOG2562 Protein phosphatase 2 96.8 0.0089 1.9E-07 51.4 8.9 137 46-192 175-343 (493)
96 PF09069 EF-hand_3: EF-hand; 96.6 0.021 4.5E-07 38.5 7.8 79 118-200 2-83 (90)
97 KOG0046 Ca2+-binding actin-bun 96.5 0.012 2.6E-07 51.5 7.3 67 119-192 19-85 (627)
98 PF10591 SPARC_Ca_bdg: Secrete 96.4 0.022 4.7E-07 40.3 7.2 62 79-144 51-112 (113)
99 smart00054 EFh EF-hand, calciu 96.3 0.0058 1.3E-07 30.7 3.1 26 121-147 2-27 (29)
100 PF09279 EF-hand_like: Phospho 96.2 0.029 6.2E-07 37.1 6.9 68 121-193 2-70 (83)
101 smart00054 EFh EF-hand, calciu 96.2 0.0091 2E-07 29.9 3.5 25 168-192 4-28 (29)
102 PLN02952 phosphoinositide phos 95.9 0.11 2.5E-06 46.9 11.0 114 95-213 13-130 (599)
103 KOG1955 Ral-GTPase effector RA 95.7 0.029 6.4E-07 48.8 6.2 75 35-112 221-295 (737)
104 KOG0039 Ferric reductase, NADH 95.3 0.055 1.2E-06 49.8 7.0 96 96-200 2-97 (646)
105 KOG4065 Uncharacterized conser 94.9 0.12 2.6E-06 36.2 6.0 67 37-107 61-142 (144)
106 KOG1707 Predicted Ras related/ 94.7 0.32 6.9E-06 43.5 9.5 141 38-191 188-376 (625)
107 KOG0035 Ca2+-binding actin-bun 94.4 0.27 5.8E-06 46.2 8.8 106 35-144 737-848 (890)
108 KOG4666 Predicted phosphate ac 94.4 0.15 3.2E-06 42.3 6.4 97 45-146 259-357 (412)
109 KOG4578 Uncharacterized conser 93.2 0.067 1.5E-06 44.2 2.5 68 120-195 334-401 (421)
110 PF09068 EF-hand_2: EF hand; 93.0 0.86 1.9E-05 32.9 7.8 99 30-148 26-125 (127)
111 KOG0169 Phosphoinositide-speci 92.8 0.86 1.9E-05 42.0 8.9 67 81-149 135-201 (746)
112 PF05042 Caleosin: Caleosin re 92.6 0.58 1.3E-05 35.4 6.5 37 166-202 98-134 (174)
113 PF09279 EF-hand_like: Phospho 92.6 0.45 9.7E-06 31.3 5.5 61 84-146 2-67 (83)
114 KOG3555 Ca2+-binding proteogly 92.2 0.26 5.7E-06 41.1 4.6 58 84-147 252-309 (434)
115 KOG3866 DNA-binding protein of 92.1 0.4 8.6E-06 39.5 5.5 70 122-192 247-324 (442)
116 KOG3555 Ca2+-binding proteogly 91.4 0.36 7.7E-06 40.4 4.5 62 118-192 249-310 (434)
117 KOG1029 Endocytic adaptor prot 91.3 0.29 6.3E-06 45.1 4.3 68 40-110 190-257 (1118)
118 PF08726 EFhand_Ca_insen: Ca2+ 91.3 0.16 3.5E-06 32.4 2.0 60 116-188 3-65 (69)
119 KOG4578 Uncharacterized conser 90.1 0.21 4.6E-06 41.4 2.2 64 84-148 335-398 (421)
120 KOG2243 Ca2+ release channel ( 89.0 0.82 1.8E-05 45.0 5.3 59 124-192 4062-4120(5019)
121 KOG1265 Phospholipase C [Lipid 88.9 21 0.00046 34.1 14.0 137 45-192 146-299 (1189)
122 KOG0998 Synaptic vesicle prote 88.8 0.57 1.2E-05 44.5 4.3 139 39-192 123-345 (847)
123 KOG0042 Glycerol-3-phosphate d 88.3 1.2 2.7E-05 39.8 5.7 75 37-113 585-660 (680)
124 KOG4286 Dystrophin-like protei 88.0 15 0.00031 34.4 12.2 150 38-198 413-586 (966)
125 PF05517 p25-alpha: p25-alpha 87.1 2.4 5.3E-05 31.6 6.0 65 46-112 3-71 (154)
126 KOG4347 GTPase-activating prot 85.2 2.4 5.2E-05 38.5 5.9 78 99-186 535-612 (671)
127 KOG4004 Matricellular protein 85.0 0.43 9.3E-06 36.8 1.0 45 96-144 202-246 (259)
128 KOG0042 Glycerol-3-phosphate d 83.1 2.8 6.1E-05 37.6 5.4 65 119-192 593-657 (680)
129 PF05517 p25-alpha: p25-alpha 82.6 5 0.00011 29.9 5.9 65 122-192 2-69 (154)
130 KOG4301 Beta-dystrobrevin [Cyt 82.4 8.2 0.00018 32.5 7.5 102 84-195 112-218 (434)
131 PLN02230 phosphoinositide phos 81.4 9 0.00019 35.1 8.0 94 117-214 27-123 (598)
132 KOG3866 DNA-binding protein of 79.9 3.7 7.9E-05 34.1 4.6 91 49-149 248-355 (442)
133 KOG1707 Predicted Ras related/ 79.8 3.3 7.1E-05 37.4 4.6 90 37-131 307-398 (625)
134 PLN02223 phosphoinositide phos 76.6 17 0.00036 32.9 8.1 97 116-215 13-115 (537)
135 KOG0035 Ca2+-binding actin-bun 75.5 9.2 0.0002 36.4 6.4 72 119-195 747-819 (890)
136 KOG1955 Ral-GTPase effector RA 75.5 8.6 0.00019 34.1 5.8 61 120-191 232-292 (737)
137 KOG2557 Uncharacterized conser 73.9 17 0.00037 31.0 7.0 102 96-199 72-182 (427)
138 PF05042 Caleosin: Caleosin re 71.8 15 0.00033 27.9 5.7 62 84-147 98-165 (174)
139 PF08414 NADPH_Ox: Respiratory 71.0 8.1 0.00018 26.4 3.8 62 43-111 28-93 (100)
140 PLN02952 phosphoinositide phos 69.4 58 0.0013 30.0 9.9 86 60-147 13-109 (599)
141 PLN02228 Phosphoinositide phos 68.3 32 0.0007 31.4 8.0 67 116-192 21-92 (567)
142 KOG2243 Ca2+ release channel ( 68.0 11 0.00024 37.9 5.2 56 51-108 4063-4118(5019)
143 PF09068 EF-hand_2: EF hand; 67.6 43 0.00094 24.0 7.5 72 119-191 41-124 (127)
144 PF04876 Tenui_NCP: Tenuivirus 67.4 34 0.00073 25.3 6.5 87 84-203 85-171 (175)
145 KOG0998 Synaptic vesicle prote 66.7 4.1 8.8E-05 39.0 2.2 72 38-112 276-347 (847)
146 TIGR01848 PHA_reg_PhaR polyhyd 64.9 29 0.00063 24.1 5.5 68 126-198 10-83 (107)
147 PF08976 DUF1880: Domain of un 64.8 5.5 0.00012 28.0 2.0 33 157-193 4-36 (118)
148 cd03035 ArsC_Yffb Arsenate Red 62.6 21 0.00046 24.6 4.7 52 137-199 36-90 (105)
149 PF13720 Acetyltransf_11: Udp 62.3 39 0.00085 22.2 5.7 57 35-97 24-80 (83)
150 cd02977 ArsC_family Arsenate R 60.7 14 0.0003 25.2 3.6 53 137-198 36-91 (105)
151 KOG1264 Phospholipase C [Lipid 60.3 81 0.0018 30.2 9.0 148 38-192 136-293 (1267)
152 PF05920 Homeobox_KN: Homeobox 58.2 6.4 0.00014 22.1 1.2 28 22-49 8-35 (40)
153 cd07313 terB_like_2 tellurium 58.2 55 0.0012 22.0 6.3 82 60-145 12-97 (104)
154 KOG2871 Uncharacterized conser 58.2 8.3 0.00018 32.9 2.3 65 116-189 306-371 (449)
155 PLN02222 phosphoinositide phos 57.2 53 0.0012 30.1 7.4 66 117-192 23-90 (581)
156 PF01023 S_100: S-100/ICaBP ty 56.5 28 0.00061 19.9 3.7 33 43-75 4-36 (44)
157 PF12174 RST: RCD1-SRO-TAF4 (R 56.3 43 0.00093 21.3 4.9 49 96-149 6-54 (70)
158 PRK13344 spxA transcriptional 55.1 24 0.00052 25.5 4.1 67 137-213 37-106 (132)
159 PF08414 NADPH_Ox: Respiratory 54.0 69 0.0015 22.0 6.7 14 96-109 42-55 (100)
160 PRK01655 spxA transcriptional 53.4 46 0.00099 23.9 5.3 67 137-213 37-106 (131)
161 cd03032 ArsC_Spx Arsenate Redu 51.1 42 0.00091 23.4 4.8 67 137-213 37-106 (115)
162 PF03705 CheR_N: CheR methyltr 48.9 48 0.001 19.6 4.2 52 139-195 2-56 (57)
163 PF14513 DAG_kinase_N: Diacylg 48.7 39 0.00084 24.7 4.3 70 62-132 6-82 (138)
164 cd03034 ArsC_ArsC Arsenate Red 48.5 57 0.0012 22.6 5.1 67 137-213 36-105 (112)
165 PF03960 ArsC: ArsC family; I 47.6 20 0.00043 24.7 2.6 68 137-213 33-103 (110)
166 TIGR00014 arsC arsenate reduct 46.6 59 0.0013 22.6 4.9 68 137-213 36-106 (114)
167 PF00046 Homeobox: Homeobox do 45.6 60 0.0013 19.1 4.3 44 37-88 5-48 (57)
168 PF00404 Dockerin_1: Dockerin 44.9 37 0.00079 16.1 2.6 16 129-145 1-16 (21)
169 PF12174 RST: RCD1-SRO-TAF4 (R 44.1 55 0.0012 20.8 4.0 45 137-192 9-53 (70)
170 KOG4004 Matricellular protein 43.0 12 0.00025 29.2 0.9 62 49-112 191-252 (259)
171 PF00427 PBS_linker_poly: Phyc 42.9 89 0.0019 22.6 5.4 24 177-200 41-64 (131)
172 TIGR01616 nitro_assoc nitrogen 42.7 66 0.0014 23.0 4.7 65 137-213 38-105 (126)
173 PF09373 PMBR: Pseudomurein-bi 42.4 32 0.0007 18.2 2.3 19 178-196 2-20 (33)
174 PRK12559 transcriptional regul 41.8 73 0.0016 22.9 4.9 68 137-214 37-107 (131)
175 PTZ00373 60S Acidic ribosomal 41.5 97 0.0021 21.8 5.2 54 121-188 5-58 (112)
176 cd03033 ArsC_15kD Arsenate Red 41.0 1.1E+02 0.0023 21.4 5.5 65 137-213 37-104 (113)
177 KOG3449 60S acidic ribosomal p 40.2 1.2E+02 0.0025 21.3 5.3 55 121-189 3-57 (112)
178 PF13608 Potyvirid-P3: Protein 40.0 27 0.00058 30.9 2.7 67 43-112 287-357 (445)
179 KOG0506 Glutaminase (contains 39.6 68 0.0015 28.6 5.0 91 121-219 88-183 (622)
180 PF11569 Homez: Homeodomain le 39.6 48 0.001 20.2 3.0 26 25-50 23-48 (56)
181 PRK12461 UDP-N-acetylglucosami 39.2 1.3E+02 0.0028 24.4 6.5 57 35-97 196-252 (255)
182 KOG4403 Cell surface glycoprot 38.0 93 0.002 27.3 5.5 60 84-148 70-129 (575)
183 COG1393 ArsC Arsenate reductas 36.5 1.4E+02 0.003 21.0 5.5 68 137-214 38-108 (117)
184 cd05833 Ribosomal_P2 Ribosomal 36.1 1.3E+02 0.0028 21.0 5.2 56 121-190 3-58 (109)
185 COG2147 RPL19A Ribosomal prote 34.4 62 0.0013 23.8 3.4 45 2-48 1-45 (150)
186 KOG1954 Endocytosis/signaling 34.2 79 0.0017 27.5 4.5 22 121-143 479-500 (532)
187 PLN02228 Phosphoinositide phos 33.5 2.5E+02 0.0053 25.9 7.8 63 81-146 23-90 (567)
188 TIGR01565 homeo_ZF_HD homeobox 33.5 1.2E+02 0.0025 18.6 4.3 37 36-79 5-45 (58)
189 PF05099 TerB: Tellurite resis 32.4 69 0.0015 22.8 3.6 79 60-142 36-118 (140)
190 PRK08570 rpl19e 50S ribosomal 32.3 61 0.0013 24.0 3.1 44 3-48 2-45 (150)
191 cd03036 ArsC_like Arsenate Red 32.1 77 0.0017 21.9 3.6 54 137-199 36-93 (111)
192 PF07879 PHB_acc_N: PHB/PHA ac 31.9 38 0.00082 21.2 1.7 22 126-148 10-31 (64)
193 PRK10026 arsenate reductase; P 31.8 1.1E+02 0.0023 22.5 4.4 53 137-199 39-94 (141)
194 PF08672 APC2: Anaphase promot 31.5 1E+02 0.0022 19.0 3.6 35 116-150 12-46 (60)
195 PF09682 Holin_LLH: Phage holi 29.9 1.9E+02 0.0041 19.9 6.3 51 123-174 55-105 (108)
196 PF14513 DAG_kinase_N: Diacylg 29.8 1.5E+02 0.0034 21.6 4.9 64 97-167 6-76 (138)
197 PF14003 YlbE: YlbE-like prote 29.1 22 0.00047 22.3 0.3 32 185-216 13-44 (65)
198 cd00086 homeodomain Homeodomai 28.2 61 0.0013 18.9 2.3 29 22-50 22-50 (59)
199 PF07492 Trehalase_Ca-bi: Neut 27.9 17 0.00037 19.0 -0.3 16 170-185 5-20 (30)
200 PRK05445 hypothetical protein; 27.7 1.4E+02 0.003 22.6 4.4 28 119-146 135-162 (164)
201 PF02761 Cbl_N2: CBL proto-onc 26.7 2E+02 0.0043 19.1 6.0 52 61-112 20-72 (85)
202 PLN02222 phosphoinositide phos 25.5 2.7E+02 0.0059 25.7 6.7 64 40-110 23-90 (581)
203 PF08976 DUF1880: Domain of un 25.4 65 0.0014 22.8 2.2 30 81-110 6-35 (118)
204 PTZ00436 60S ribosomal protein 25.4 88 0.0019 26.1 3.2 45 2-48 1-45 (357)
205 TIGR03573 WbuX N-acetyl sugar 25.1 1.8E+02 0.0039 24.6 5.3 14 133-147 300-313 (343)
206 PF08100 Dimerisation: Dimeris 24.9 94 0.002 18.4 2.5 31 60-90 19-49 (51)
207 TIGR02787 codY_Gpos GTP-sensin 24.6 2.4E+02 0.0052 22.9 5.4 39 38-82 176-214 (251)
208 PF02864 STAT_bind: STAT prote 24.2 1.4E+02 0.0031 24.3 4.2 53 137-189 179-232 (254)
209 cd06404 PB1_aPKC PB1 domain is 24.1 2E+02 0.0043 19.1 4.1 18 118-135 58-75 (83)
210 PF12486 DUF3702: ImpA domain 23.9 2E+02 0.0043 21.3 4.7 37 121-158 71-107 (148)
211 PLN00138 large subunit ribosom 23.9 2.7E+02 0.0057 19.6 5.2 39 123-166 5-43 (113)
212 COG4103 Uncharacterized protei 23.5 2.5E+02 0.0055 20.7 5.0 61 123-192 34-94 (148)
213 cd07313 terB_like_2 tellurium 23.5 2.3E+02 0.005 18.8 5.9 81 95-185 12-93 (104)
214 PRK10667 Hha toxicity attenuat 23.2 2.8E+02 0.0061 19.6 6.3 38 160-200 74-111 (122)
215 TIGR01617 arsC_related transcr 23.0 69 0.0015 22.3 2.0 35 179-213 73-108 (117)
216 PF09336 Vps4_C: Vps4 C termin 22.9 1.1E+02 0.0024 18.8 2.8 26 137-166 30-55 (62)
217 PF10757 YbaJ: Biofilm formati 22.4 2.9E+02 0.0063 19.6 6.7 38 160-200 74-111 (122)
218 COG5562 Phage envelope protein 22.3 74 0.0016 23.1 2.0 26 85-110 75-100 (137)
219 cd08327 CARD_RAIDD Caspase act 22.1 2.6E+02 0.0056 18.9 5.0 55 132-200 32-86 (94)
220 TIGR00988 hip integration host 21.6 1.2E+02 0.0027 20.0 3.0 45 138-186 2-48 (94)
221 KOG1785 Tyrosine kinase negati 21.4 5.2E+02 0.011 22.7 7.1 89 62-154 189-280 (563)
222 PLN02508 magnesium-protoporphy 21.2 4E+02 0.0088 22.7 6.3 23 178-200 93-116 (357)
223 COG1508 RpoN DNA-directed RNA 21.2 5.9E+02 0.013 22.7 9.2 88 96-192 87-174 (444)
224 PF09851 SHOCT: Short C-termin 21.0 1.4E+02 0.0031 15.4 3.1 13 60-72 13-25 (31)
225 PF12872 OST-HTH: OST-HTH/LOTU 20.9 2.2E+02 0.0047 17.5 4.9 19 171-189 38-56 (74)
226 cd01418 Ribosomal_L19e_A Ribos 20.3 1.4E+02 0.0031 22.0 3.2 39 8-48 4-42 (145)
227 cd00481 Ribosomal_L19e Ribosom 20.2 1.4E+02 0.003 22.0 3.1 39 8-48 4-42 (145)
228 KOG1265 Phospholipase C [Lipid 20.0 6.8E+02 0.015 24.7 8.1 79 66-147 207-298 (1189)
No 1
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.95 E-value=6.3e-27 Score=178.52 Aligned_cols=182 Identities=45% Similarity=0.661 Sum_probs=159.3
Q ss_pred hcCCCCCCCCCCCcHHHHHHhcC----CCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHH
Q 027386 16 LQCCDTNPSRGLEDPEILARETV----FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLF 91 (224)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~~~~----~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~ 91 (224)
||+..++.. +.++.+.+...+. ||..+|.+|+..|.+++++. ++|+++.+||..+. ....+++..+|+..+
T Consensus 1 Mg~~~s~~~-~~~~~~~~~~~~~~~~~fs~~EI~~L~~rF~kl~~~~-~~g~lt~eef~~i~---~~~~Np~~~rI~~~f 75 (187)
T KOG0034|consen 1 MGNLSSTLL-SDEDLEELQMYTGDPTQFSANEIERLYERFKKLDRNN-GDGYLTKEEFLSIP---ELALNPLADRIIDRF 75 (187)
T ss_pred CCccccccc-chhhhHHHHhccCCCcccCHHHHHHHHHHHHHhcccc-ccCccCHHHHHHHH---HHhcCcHHHHHHHHH
Confidence 566665442 1367788888888 99999999999999999874 68999999999887 556678889999999
Q ss_pred cCCCCCc-ccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 027386 92 DTKHNGI-LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTF 170 (224)
Q Consensus 92 d~~~~g~-I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f 170 (224)
+.+++|. |+|++|+..++.+......++++++||++||.+++|+ |+.+|+.+++..++...... +++..+.+++.+|
T Consensus 76 ~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~-I~reel~~iv~~~~~~~~~~-~~e~~~~i~d~t~ 153 (187)
T KOG0034|consen 76 DTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGF-ISREELKQILRMMVGENDDM-SDEQLEDIVDKTF 153 (187)
T ss_pred hccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCc-CcHHHHHHHHHHHHccCCcc-hHHHHHHHHHHHH
Confidence 9998888 9999999999999997777789999999999999999 99999999998875432222 5999999999999
Q ss_pred HHhCCCCCCcccHHHHHHHHHhChhhHhhhcccc
Q 027386 171 EEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQY 204 (224)
Q Consensus 171 ~~~d~~~dg~It~~eF~~~~~~~~~l~~~~~~~~ 204 (224)
.++|.++||+|+++||..++.+.|.+.+.|++++
T Consensus 154 ~e~D~d~DG~IsfeEf~~~v~~~P~~~~~m~~~~ 187 (187)
T KOG0034|consen 154 EEADTDGDGKISFEEFCKVVEKQPDLLEKMTIRF 187 (187)
T ss_pred HHhCCCCCCcCcHHHHHHHHHcCccHHHHcCCCC
Confidence 9999999999999999999999999999998764
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.94 E-value=8.1e-26 Score=166.96 Aligned_cols=151 Identities=27% Similarity=0.480 Sum_probs=139.5
Q ss_pred HHHhcCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccC-CcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhh
Q 027386 33 LARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN-KKESLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (224)
Q Consensus 33 l~~~~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~ 111 (224)
+...+.|+.+++++|+++|..+|++ ++|.|+..+|..+++..+ .+...++.+++..+|. +.+.|+|.+|+.++...
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d--~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~ 84 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRD--SDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVK 84 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcC--CCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHH
Confidence 6667889999999999999999999 999999999999998765 5567789999999999 88999999999999999
Q ss_pred CCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 027386 112 HPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVL 191 (224)
Q Consensus 112 ~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~ 191 (224)
......+++++.||++||.|++|+ |+..+++.++..+ |..+++++++.++ ..+|.+++|.|+|++|.+.+.
T Consensus 85 ~~~~~~~Eel~~aF~~fD~d~dG~-Is~~eL~~vl~~l----ge~~~deev~~ll----~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 85 LKRGDKEEELREAFKLFDKDHDGY-ISIGELRRVLKSL----GERLSDEEVEKLL----KEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred hccCCcHHHHHHHHHHhCCCCCce-ecHHHHHHHHHhh----cccCCHHHHHHHH----HhcCCCCCceEeHHHHHHHHh
Confidence 977888999999999999999999 9999999998766 9999999999999 899999999999999999988
Q ss_pred hChh
Q 027386 192 RHPS 195 (224)
Q Consensus 192 ~~~~ 195 (224)
..|.
T Consensus 156 ~~~~ 159 (160)
T COG5126 156 DSPT 159 (160)
T ss_pred ccCC
Confidence 7664
No 3
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.94 E-value=9.1e-26 Score=172.22 Aligned_cols=169 Identities=31% Similarity=0.521 Sum_probs=152.0
Q ss_pred CcHHHHHHhcCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhcc--CCcchHHHHHHHHHHcCCCCCcccHHHHH
Q 027386 28 EDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKT--NKKESLFADRVFDLFDTKHNGILGFEEFA 105 (224)
Q Consensus 28 ~~~~~l~~~~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~--~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~ 105 (224)
+.++++.+.|.|+++++..+++.|..-+ ++|.|+.++|+.++... ......+++.+|..+|.|++|.|+|.||+
T Consensus 12 ~~~e~l~~~t~f~~~ei~~~Yr~Fk~~c----P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi 87 (193)
T KOG0044|consen 12 ESLEQLVQQTKFSKKEIQQWYRGFKNEC----PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFI 87 (193)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhcccC----CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHH
Confidence 7789999999999999999999999866 58999999999998773 34566789999999999999999999999
Q ss_pred HHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHhCCCCCCccc
Q 027386 106 RALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMN---LSDDVIETIIDKTFEEADTKHDGKID 182 (224)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~---~~~~~~~~~~~~~f~~~d~~~dg~It 182 (224)
.+++..+. ++.+++++.+|++||.||+|+ |+++|+..+++++....+.. ..++..++.+..+|..+|.|+||.||
T Consensus 88 ~als~~~r-Gt~eekl~w~F~lyD~dgdG~-It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT 165 (193)
T KOG0044|consen 88 CALSLTSR-GTLEEKLKWAFRLYDLDGDGY-ITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLT 165 (193)
T ss_pred HHHHHHcC-CcHHHHhhhhheeecCCCCce-EcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCccc
Confidence 99999998 899999999999999999999 99999999999987766641 33456778888889999999999999
Q ss_pred HHHHHHHHHhChhhHhhhcc
Q 027386 183 KEEWRSLVLRHPSLLKNMTL 202 (224)
Q Consensus 183 ~~eF~~~~~~~~~l~~~~~~ 202 (224)
++||...++..|.+++.++.
T Consensus 166 ~eef~~~~~~d~~i~~~l~~ 185 (193)
T KOG0044|consen 166 LEEFIEGCKADPSILRALEQ 185 (193)
T ss_pred HHHHHHHhhhCHHHHHHhhh
Confidence 99999999999999998855
No 4
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.88 E-value=3.9e-21 Score=143.86 Aligned_cols=143 Identities=24% Similarity=0.409 Sum_probs=128.0
Q ss_pred CCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCc-chHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCCh
Q 027386 39 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPI 117 (224)
Q Consensus 39 ~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~ 117 (224)
++..++..++.+|..+|.+ ++|+|+..++..++...+.. ....+..++..+|.+++|.|+|.+|+..+.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d--~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~ 79 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKD--GDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTD 79 (151)
T ss_pred CCHHHHHHHHHHHHHHCCC--CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccc
Confidence 5678899999999999999 99999999999999887644 55668999999999999999999999999876653333
Q ss_pred ----HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 118 ----DDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 118 ----~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
.+.++.||+.||.+++|+ |+.+||+.++..+ |...+.++++.++ ..+|.|+||.|+|++|++++..
T Consensus 80 ~~~~~~el~eaF~~fD~d~~G~-Is~~el~~~l~~l----g~~~~~~e~~~mi----~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 80 EEASSEELKEAFRVFDKDGDGF-ISASELKKVLTSL----GEKLTDEECKEMI----REVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccccHHHHHHHHHHHccCCCCc-CcHHHHHHHHHHh----CCcCCHHHHHHHH----HhcCCCCCCeEeHHHHHHHHhc
Confidence 348999999999999999 9999999998776 9999999999999 8999999999999999998874
No 5
>PTZ00183 centrin; Provisional
Probab=99.87 E-value=1.5e-20 Score=141.27 Aligned_cols=148 Identities=20% Similarity=0.342 Sum_probs=130.2
Q ss_pred cCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCC-cchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCC
Q 027386 37 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNK-KESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNA 115 (224)
Q Consensus 37 ~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~ 115 (224)
..+++.++..+...|..+|.+ ++|.|+..+|..++...+. .....+..+|..+|.+++|.|+|.||+.++.......
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~ 86 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTD--GSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGER 86 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCC
Confidence 358899999999999999999 9999999999999977654 3445689999999999999999999999887654445
Q ss_pred ChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChh
Q 027386 116 PIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPS 195 (224)
Q Consensus 116 ~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~~~ 195 (224)
...+.++.+|+.+|.+++|+ |+.+||..++..+ |..++++++..++ ..+|.+++|.|+|++|..++...|.
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~-i~~~e~~~~l~~~----~~~l~~~~~~~~~----~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGK-ISLKNLKRVAKEL----GETITDEELQEMI----DEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCc-CcHHHHHHHHHHh----CCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHhcccC
Confidence 66778999999999999999 9999999998765 8889988877777 8999999999999999999998875
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.84 E-value=2.6e-19 Score=133.10 Aligned_cols=144 Identities=22% Similarity=0.430 Sum_probs=126.1
Q ss_pred CCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCC-cchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCC
Q 027386 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNK-KESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAP 116 (224)
Q Consensus 38 ~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~ 116 (224)
.++++++..++..|..+|.+ ++|.|+.++|..++...+. .....+..+|..+|.+++|.|+|++|+..+........
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 81 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKD--GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD 81 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCC--CCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc
Confidence 47889999999999999999 9999999999998876553 34557899999999999999999999999887655456
Q ss_pred hHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 117 IDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 117 ~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
..+.++.+|+.+|.+++|. |+.+||..++..+ |..++.+++..++ ..+|.+++|.|+|+||+.++..
T Consensus 82 ~~~~~~~~F~~~D~~~~g~-i~~~e~~~~l~~~----~~~~~~~~~~~~~----~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGF-ISAAELRHVMTNL----GEKLTDEEVDEMI----READVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHHHhhCCCCCCe-EeHHHHHHHHHHH----CCCCCHHHHHHHH----HhcCCCCCCcCcHHHHHHHHhc
Confidence 6788999999999999999 9999999998765 7788888877776 7899999999999999988764
No 7
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.83 E-value=1e-19 Score=129.80 Aligned_cols=174 Identities=28% Similarity=0.468 Sum_probs=145.6
Q ss_pred CCCCcHHHHHHhcCCCHHHHHHHHHHHHhhcccCcCCC------CCCHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCc
Q 027386 25 RGLEDPEILARETVFSVSEIEALYELFKKISSAVIDDG------LINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGI 98 (224)
Q Consensus 25 ~~~~~~~~l~~~~~~s~~~i~~l~~~F~~~d~~~~~~g------~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~ 98 (224)
.+.+++..+...|.|+.++|.+++..|..+.++.+... .+..--+..+-+...+..+++.++|..+|..++.|.
T Consensus 8 FT~eqLd~YQDCTFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPELkenpfk~ri~e~FSeDG~Gn 87 (189)
T KOG0038|consen 8 FTEEQLDEYQDCTFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPELKENPFKRRICEVFSEDGRGN 87 (189)
T ss_pred eeHHHHhhhcccccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhhhcChHHHHHHHHhccCCCCc
Confidence 45688889999999999999999999999987533211 111122222222245667888999999999999999
Q ss_pred ccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCC
Q 027386 99 LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHD 178 (224)
Q Consensus 99 I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~d 178 (224)
++|++|+.+++.++.....+-++..||++||.|+|+. |..+++...+.++ ....+++++++.++..+..+.|.|+|
T Consensus 88 lsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~-i~~~DL~~~l~~l---Tr~eLs~eEv~~i~ekvieEAD~DgD 163 (189)
T KOG0038|consen 88 LSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEF-IGHDDLEKTLTSL---TRDELSDEEVELICEKVIEEADLDGD 163 (189)
T ss_pred ccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCc-ccHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999987777888999999999999999 9999999998776 34579999999999999999999999
Q ss_pred CcccHHHHHHHHHhChhhHhhhcc
Q 027386 179 GKIDKEEWRSLVLRHPSLLKNMTL 202 (224)
Q Consensus 179 g~It~~eF~~~~~~~~~l~~~~~~ 202 (224)
|++++.||..++.+.|+.+.-|++
T Consensus 164 gkl~~~eFe~~i~raPDFlsTFHI 187 (189)
T KOG0038|consen 164 GKLSFAEFEHVILRAPDFLSTFHI 187 (189)
T ss_pred CcccHHHHHHHHHhCcchHhhhee
Confidence 999999999999999998876654
No 8
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=2.6e-18 Score=124.63 Aligned_cols=146 Identities=23% Similarity=0.400 Sum_probs=131.5
Q ss_pred cCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCc-chHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCC
Q 027386 37 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNA 115 (224)
Q Consensus 37 ~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~ 115 (224)
..++.++-+.++..|..+|.+ ++|+|+.++|..++.+.|.. ....+.++..-.|+++.|.|+|++|+..+.......
T Consensus 25 ~~l~~~q~q~i~e~f~lfd~~--~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~ 102 (172)
T KOG0028|consen 25 SELTEEQKQEIKEAFELFDPD--MAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGER 102 (172)
T ss_pred ccccHHHHhhHHHHHHhhccC--CCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhcc
Confidence 457888889999999999999 99999999998888887755 456688899999999999999999999987766556
Q ss_pred ChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhC
Q 027386 116 PIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRH 193 (224)
Q Consensus 116 ~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~ 193 (224)
.+.+.++.+|+.+|.|++|. |+..+|+.+.+.+ |+.++++++.+|| ..+|.+++|.|.-++|.+++++.
T Consensus 103 dt~eEi~~afrl~D~D~~Gk-is~~~lkrvakeL----genltD~El~eMI----eEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 103 DTKEEIKKAFRLFDDDKTGK-ISQRNLKRVAKEL----GENLTDEELMEMI----EEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred CcHHHHHHHHHcccccCCCC-cCHHHHHHHHHHh----CccccHHHHHHHH----HHhcccccccccHHHHHHHHhcC
Confidence 78899999999999999999 9999999997776 9999999999999 89999999999999999998863
No 9
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.79 E-value=1.2e-17 Score=120.39 Aligned_cols=140 Identities=19% Similarity=0.346 Sum_probs=124.2
Q ss_pred CCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCc-chHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCC
Q 027386 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAP 116 (224)
Q Consensus 38 ~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~ 116 (224)
.|++.||+++++.|..+|.| ++|.|++++++..+.+.|-. .+.+++.++.. ..|.|+|.-|+.++...+...+
T Consensus 25 mf~q~QIqEfKEAF~~mDqn--rDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gtd 98 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQN--RDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGTD 98 (171)
T ss_pred HhhHHHHHHHHHHHHHHhcc--CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCCC
Confidence 48999999999999999999 99999999999999887644 45556666554 5789999999999998887788
Q ss_pred hHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 117 IDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 117 ~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
+++.+..||+.||.++.|. |..+.++.+|.+. |..+++++|+.+. ..+-++..|.++|..|..++..
T Consensus 99 pe~~I~~AF~~FD~~~~G~-I~~d~lre~Ltt~----gDr~~~eEV~~m~----r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGK-IDEDYLRELLTTM----GDRFTDEEVDEMY----REAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHHHhcCccCCCc-cCHHHHHHHHHHh----cccCCHHHHHHHH----HhCCcccCCceeHHHHHHHHHc
Confidence 9999999999999999999 9999999997664 9999999998888 7888889999999999999873
No 10
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.69 E-value=9.9e-16 Score=117.03 Aligned_cols=140 Identities=22% Similarity=0.353 Sum_probs=120.9
Q ss_pred HHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhc-cCCc-chHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHH
Q 027386 43 EIEALYELFKKISSAVIDDGLINKEEFQLALFK-TNKK-ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDK 120 (224)
Q Consensus 43 ~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~-~~~~-~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~ 120 (224)
.-..+...|...|.+ ++|+|+.+|++.++.. ...+ ....+..|..++|.+.+|+|+|.||...+..+..
T Consensus 55 ~~~~~~~~f~~vD~d--~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~------- 125 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRD--RSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQ------- 125 (221)
T ss_pred ccHHHHHHHHhhCcc--ccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH-------
Confidence 345788999999999 9999999999999863 2222 3455899999999999999999999999977654
Q ss_pred HHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhHhhh
Q 027386 121 IEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNM 200 (224)
Q Consensus 121 l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~~ 200 (224)
|+.+|+.||.|++|. |+..||++++..+ |..++++..+.++ .++|..++|.|.|++|+..+...+-+-+.|
T Consensus 126 Wr~vF~~~D~D~SG~-I~~sEL~~Al~~~----Gy~Lspq~~~~lv----~kyd~~~~g~i~FD~FI~ccv~L~~lt~~F 196 (221)
T KOG0037|consen 126 WRNVFRTYDRDRSGT-IDSSELRQALTQL----GYRLSPQFYNLLV----RKYDRFGGGRIDFDDFIQCCVVLQRLTEAF 196 (221)
T ss_pred HHHHHHhcccCCCCc-ccHHHHHHHHHHc----CcCCCHHHHHHHH----HHhccccCCceeHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999997776 9999998888888 899977799999999999998866655554
No 11
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.67 E-value=1.8e-15 Score=107.46 Aligned_cols=142 Identities=18% Similarity=0.286 Sum_probs=121.3
Q ss_pred CCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccC-CcchHHHHHHHHHHcCC--CCCcccHHHHHHHHhhhCCC
Q 027386 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN-KKESLFADRVFDLFDTK--HNGILGFEEFARALSVFHPN 114 (224)
Q Consensus 38 ~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~lf~~~d~~--~~g~I~f~Ef~~~~~~~~~~ 114 (224)
.+++++...++++|..+|.. ++|.|+..+..+.+...+ .|.+..+.+....++++ +..+|+|++|+..+..+.+.
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~--gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRT--GDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred ccCcchHHHHHHHHHHHhcc--CcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 46778889999999999999 999999999999998866 55667788888888776 45789999999999887753
Q ss_pred --CChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 027386 115 --APIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVL 191 (224)
Q Consensus 115 --~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~ 191 (224)
+-.-+.+...++.||++++|. |...|++.++.++ |..+++++++.++ .--.|.+|.|.|+.|++.+.
T Consensus 82 k~q~t~edfvegLrvFDkeg~G~-i~~aeLRhvLttl----Gekl~eeEVe~Ll-----ag~eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 82 KDQGTYEDFVEGLRVFDKEGNGT-IMGAELRHVLTTL----GEKLTEEEVEELL-----AGQEDSNGCINYEAFVKHIM 150 (152)
T ss_pred cccCcHHHHHHHHHhhcccCCcc-eeHHHHHHHHHHH----HhhccHHHHHHHH-----ccccccCCcCcHHHHHHHHh
Confidence 233467888999999999999 9999999998877 9999999999999 34457889999999998764
No 12
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.59 E-value=4.2e-14 Score=117.03 Aligned_cols=138 Identities=27% Similarity=0.421 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCc--chHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChH
Q 027386 41 VSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK--ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPID 118 (224)
Q Consensus 41 ~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~ 118 (224)
.+--.+++..|+.+|.+ ++|+++..++...+..+..+ ....+..+|...|.|.+|.++|+||...+. ..+
T Consensus 10 ~er~~r~~~lf~~lD~~--~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~------~~E 81 (463)
T KOG0036|consen 10 EERDIRIRCLFKELDSK--NDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD------NKE 81 (463)
T ss_pred HHHHHHHHHHHHHhccC--CCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH------HhH
Confidence 34446789999999999 99999999999888765444 345688899999999999999999999995 456
Q ss_pred HHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChh
Q 027386 119 DKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPS 195 (224)
Q Consensus 119 ~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~~~ 195 (224)
.++..+|+..|.++||. |...|+.+.++.+ |..+++++++.++ +.+|.++++.|+++||...+..+|+
T Consensus 82 ~~l~~~F~~iD~~hdG~-i~~~Ei~~~l~~~----gi~l~de~~~k~~----e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 82 LELYRIFQSIDLEHDGK-IDPNEIWRYLKDL----GIQLSDEKAAKFF----EHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred HHHHHHHhhhccccCCc-cCHHHHHHHHHHh----CCccCHHHHHHHH----HHhccCCCeeeccHHHHhhhhcCCh
Confidence 67999999999999999 9999999998776 9999999988877 8999999999999999999999984
No 13
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.41 E-value=1.2e-12 Score=83.84 Aligned_cols=66 Identities=27% Similarity=0.599 Sum_probs=60.4
Q ss_pred HHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 027386 120 KIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLV 190 (224)
Q Consensus 120 ~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~ 190 (224)
+++.+|+.+|.+++|+ |+.+||..++..+ +...+++.++.++..+|..+|.|++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~-i~~~el~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGY-ISKEELRRALKHL----GRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSE-EEHHHHHHHHHHT----TSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCC-CCHHHHHHHHHHh----cccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4789999999999999 9999999998776 6667788999999999999999999999999999875
No 14
>PLN02964 phosphatidylserine decarboxylase
Probab=99.38 E-value=1.3e-11 Score=110.28 Aligned_cols=136 Identities=20% Similarity=0.278 Sum_probs=105.9
Q ss_pred CCcHHHHHHh--cCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccC--CcchH---HHHHHHHHHcCCCCCcc
Q 027386 27 LEDPEILARE--TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN--KKESL---FADRVFDLFDTKHNGIL 99 (224)
Q Consensus 27 ~~~~~~l~~~--~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~--~~~~~---~~~~lf~~~d~~~~g~I 99 (224)
..++..+... +.|+.+|+.++++.|+.+|++ ++|.+ +..++...+ .+... +++++|..+|.+++|.|
T Consensus 123 ~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~d--gdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~I 196 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQEPESACESFDLLDPS--SSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQL 196 (644)
T ss_pred HHHhhhheeecHhhccHHHHHHHHHHHHHHCCC--CCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeE
Confidence 3666667666 889999999999999999999 99987 555555555 22322 37899999999999999
Q ss_pred cHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHH---------HHhcCCCCCH-HHHHHHHHHH
Q 027386 100 GFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVAT---------LAESGMNLSD-DVIETIIDKT 169 (224)
Q Consensus 100 ~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~---------~~~~~~~~~~-~~~~~~~~~~ 169 (224)
+|+||+.++..+.. ...++.++.+|+.||.|++|+ |+.+||.+++... +.-.+..++. +++..++...
T Consensus 197 dfdEFl~lL~~lg~-~~seEEL~eaFk~fDkDgdG~-Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH~~ 274 (644)
T PLN02964 197 SFSEFSDLIKAFGN-LVAANKKEELFKAADLNGDGV-VTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIHMT 274 (644)
T ss_pred cHHHHHHHHHHhcc-CCCHHHHHHHHHHhCCCCCCc-CCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHHHH
Confidence 99999999987654 567788999999999999999 9999999998762 0112334544 5666777544
Q ss_pred H
Q 027386 170 F 170 (224)
Q Consensus 170 f 170 (224)
.
T Consensus 275 ~ 275 (644)
T PLN02964 275 L 275 (644)
T ss_pred H
Confidence 3
No 15
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.29 E-value=3.6e-11 Score=101.20 Aligned_cols=145 Identities=19% Similarity=0.307 Sum_probs=117.7
Q ss_pred CCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHH----HHcCCCCCcccHHHHHHHHhhhCC
Q 027386 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFD----LFDTKHNGILGFEEFARALSVFHP 113 (224)
Q Consensus 38 ~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~----~~d~~~~g~I~f~Ef~~~~~~~~~ 113 (224)
.||.+.-..++..|..+|+| ++|.++.+++...- .+.-...++++||. .+-...+|+++|++|+.++.....
T Consensus 271 ~FS~e~f~viy~kFweLD~D--hd~lidk~~L~ry~--d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~ 346 (493)
T KOG2562|consen 271 YFSYEHFYVIYCKFWELDTD--HDGLIDKEDLKRYG--DHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED 346 (493)
T ss_pred heeHHHHHHHHHHHhhhccc--cccccCHHHHHHHh--ccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc
Confidence 48888889999999999999 99999999998653 23334667999999 334457899999999999988776
Q ss_pred CCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 027386 114 NAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMN-LSDDVIETIIDKTFEEADTKHDGKIDKEEWRS 188 (224)
Q Consensus 114 ~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~ 188 (224)
.+...-++..|+++|.+++|. ++..|++-++...++.+-.. ..+--++.+..++++++.+...++||++||..
T Consensus 347 -k~t~~SleYwFrclDld~~G~-Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 347 -KDTPASLEYWFRCLDLDGDGI-LTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred -CCCccchhhheeeeeccCCCc-ccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 566778999999999999999 99999999998886653221 11123466777777999988889999999988
No 16
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.21 E-value=1.9e-10 Score=96.37 Aligned_cols=138 Identities=18% Similarity=0.211 Sum_probs=109.4
Q ss_pred HHHHHHHHhhcccCcCCCCCCHHHHHHHHhc---cCCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCC----C--
Q 027386 45 EALYELFKKISSAVIDDGLINKEEFQLALFK---TNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPN----A-- 115 (224)
Q Consensus 45 ~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~---~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~----~-- 115 (224)
..|.+.|..+|.. ++|.++..++..++.. +++++......+ ...+.+|.|.|.+....+..-... .
T Consensus 464 sdL~~eF~~~D~~--ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kl---a~~s~d~~v~Y~~~~~~l~~e~~~~ea~~sl 538 (631)
T KOG0377|consen 464 SDLEDEFRKYDPK--KSGKLSISHWAKCMENITGLNLPWRLLRPKL---ANGSDDGKVEYKSTLDNLDTEVILEEAGSSL 538 (631)
T ss_pred hHHHHHHHhcChh--hcCeeeHHHHHHHHHHHhcCCCcHHHhhhhc---cCCCcCcceehHhHHHHhhhhhHHHHHHhHH
Confidence 4578899999999 9999999999988754 556654433333 233457889998877655432110 0
Q ss_pred -----ChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 027386 116 -----PIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLV 190 (224)
Q Consensus 116 -----~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~ 190 (224)
.....++.+|+.+|.|++|. |+.+||+.+++.+..++...+++.++.++. ..+|.|+||.|++.||+.++
T Consensus 539 vetLYr~ks~LetiF~~iD~D~SG~-isldEF~~a~~l~~sh~~~~i~~~~i~~la----~~mD~NkDG~IDlNEfLeAF 613 (631)
T KOG0377|consen 539 VETLYRNKSSLETIFNIIDADNSGE-ISLDEFRTAWKLLSSHMNGAISDDEILELA----RSMDLNKDGKIDLNEFLEAF 613 (631)
T ss_pred HHHHHhchhhHHHHHHHhccCCCCc-eeHHHHHHHHHHHHhhcCCCcCHHHHHHHH----HhhccCCCCcccHHHHHHHH
Confidence 12335788999999999999 999999999999888888999999999999 79999999999999999998
Q ss_pred Hh
Q 027386 191 LR 192 (224)
Q Consensus 191 ~~ 192 (224)
+-
T Consensus 614 rl 615 (631)
T KOG0377|consen 614 RL 615 (631)
T ss_pred hh
Confidence 85
No 17
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.20 E-value=2.9e-10 Score=84.99 Aligned_cols=105 Identities=21% Similarity=0.352 Sum_probs=86.4
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHH-H
Q 027386 83 FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDD-V 161 (224)
Q Consensus 83 ~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~-~ 161 (224)
....+|..+|.+++|.|+-.|+-.++..+.. ......+..+++.+|.+++|. |+.+||..++... ....+.+ .
T Consensus 9 el~~~F~~fD~d~~G~i~~~el~~~lr~lg~-~~t~~el~~~~~~~D~dg~g~-I~~~eF~~l~~~~----~~~~~~~~~ 82 (151)
T KOG0027|consen 9 ELKEAFQLFDKDGDGKISVEELGAVLRSLGQ-NPTEEELRDLIKEIDLDGDGT-IDFEEFLDLMEKL----GEEKTDEEA 82 (151)
T ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCCCCe-EcHHHHHHHHHhh----hcccccccc
Confidence 3678999999999999999999999999887 577888999999999999999 9999999998654 2222211 1
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhC
Q 027386 162 IETIIDKTFEEADTKHDGKIDKEEWRSLVLRH 193 (224)
Q Consensus 162 ~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~ 193 (224)
...-++.+|..+|.|++|+||.+|+..++...
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l 114 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSL 114 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh
Confidence 22234456699999999999999999999873
No 18
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.5e-10 Score=93.68 Aligned_cols=136 Identities=24% Similarity=0.330 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCc--chHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChH-
Q 027386 42 SEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK--ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPID- 118 (224)
Q Consensus 42 ~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~- 118 (224)
+.+.+-.+.|...|.| ++|.++.+||...+.+...+ ...-+..-+.-.|+|+||.|+++||+.-+..-.......
T Consensus 160 km~~rDe~rFk~AD~d--~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epe 237 (325)
T KOG4223|consen 160 KMIARDEERFKAADQD--GDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPE 237 (325)
T ss_pred HHHHHHHHHHhhcccC--CCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcc
Confidence 3577789999999999 99999999999887553322 223367778889999999999999999886654311111
Q ss_pred ---HHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 027386 119 ---DKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRS 188 (224)
Q Consensus 119 ---~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~ 188 (224)
..-...+..+|+|+||+ ++.+|++.-+. ..+......++..++ ...|.|+||++|++|.+.
T Consensus 238 Wv~~Ere~F~~~~DknkDG~-L~~dEl~~WI~----P~~~d~A~~EA~hL~----~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 238 WVLTEREQFFEFRDKNKDGK-LDGDELLDWIL----PSEQDHAKAEARHLL----HEADEDKDGKLSKEEILE 301 (325)
T ss_pred cccccHHHHHHHhhcCCCCc-cCHHHHhcccC----CCCccHHHHHHHHHh----hhhccCccccccHHHHhh
Confidence 22446788889999999 99999997542 224455666777777 899999999999998643
No 19
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.20 E-value=8.4e-11 Score=79.51 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=57.1
Q ss_pred HHHHHHHHHhCC-CCCCCcccHHHHHHHHHH-HHHhcCCCCCH-HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 119 DKIEFSFQLYDL-KQQGFFIERQEVKQMVVA-TLAESGMNLSD-DVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 119 ~~l~~~F~~~D~-~~~G~~I~~~e~~~~l~~-~~~~~~~~~~~-~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
..++.+|+.||+ +++|+ |+..||+.++.. + |..+++ ++++.++ ..+|.|+||+|+|+||.+++..
T Consensus 8 ~~l~~~F~~fd~~~~~g~-i~~~ELk~ll~~el----g~~ls~~~~v~~mi----~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 8 ETLVSNFHKASVKGGKES-LTASEFQELLTQQL----PHLLKDVEGLEEKM----KNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHhCCCCCCe-ECHHHHHHHHHHHh----hhhccCHHHHHHHH----HHhCCCCCCCCcHHHHHHHHHH
Confidence 458889999999 99999 999999999876 4 655776 7777777 8999999999999999998876
No 20
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=4e-10 Score=91.22 Aligned_cols=153 Identities=22% Similarity=0.282 Sum_probs=109.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccC-CcchHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027386 30 PEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN-KKESLFADRVFDLFDTKHNGILGFEEFARAL 108 (224)
Q Consensus 30 ~~~l~~~~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~ 108 (224)
.....+.+... ...++...+.++|.+ ++|+|+..++...+.... ......+.+-|...|.|.+|.|+|+|+....
T Consensus 64 ~~~fd~l~~ee--~~~rl~~l~~~iD~~--~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~ 139 (325)
T KOG4223|consen 64 ADEFDQLTPEE--SQERLGKLVPKIDSD--SDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQT 139 (325)
T ss_pred hhhhhhhCcch--hHHHHHHHHhhhcCC--CCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhh
Confidence 34444444433 456789999999988 999999999998874421 2223336778889999999999999999988
Q ss_pred hhhCC------CCCh-------HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC
Q 027386 109 SVFHP------NAPI-------DDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADT 175 (224)
Q Consensus 109 ~~~~~------~~~~-------~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~ 175 (224)
..... +... -.+-+.-|++-|.|++|. +|.+||..++ .+.--+....-++...+..+|.
T Consensus 140 ~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~-lt~EEF~aFL-------HPEe~p~M~~iVi~Etl~d~Dk 211 (325)
T KOG4223|consen 140 YGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGS-LTLEEFTAFL-------HPEEHPHMKDIVIAETLEDIDK 211 (325)
T ss_pred hhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCc-ccHHHHHhcc-------ChhhcchHHHHHHHHHHhhccc
Confidence 75321 0111 123455699999999999 9999999996 2222222333445555589999
Q ss_pred CCCCcccHHHHHHHHHhCh
Q 027386 176 KHDGKIDKEEWRSLVLRHP 194 (224)
Q Consensus 176 ~~dg~It~~eF~~~~~~~~ 194 (224)
|+||.|+++||+.=+.+.+
T Consensus 212 n~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 212 NGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred CCCCceeHHHHHhHHhhcc
Confidence 9999999999998777654
No 21
>PTZ00184 calmodulin; Provisional
Probab=99.13 E-value=1.1e-09 Score=81.02 Aligned_cols=100 Identities=19% Similarity=0.309 Sum_probs=81.0
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027386 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIE 163 (224)
Q Consensus 84 ~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~ 163 (224)
....|..+|.+++|.|++.||..++..... ....+.++.+|+.+|.+++|. |+.++|..++...+ ......
T Consensus 13 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~-i~~~ef~~~l~~~~---~~~~~~---- 83 (149)
T PTZ00184 13 FKEAFSLFDKDGDGTITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGT-IDFPEFLTLMARKM---KDTDSE---- 83 (149)
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHhCC-CCCHHHHHHHHHhcCcCCCCc-CcHHHHHHHHHHhc---cCCcHH----
Confidence 567899999999999999999998876554 344678999999999999999 99999999876431 111222
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 164 TIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 164 ~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
..+..+|..+|.+++|.|+.++|..++..
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 33456679999999999999999998865
No 22
>PTZ00183 centrin; Provisional
Probab=99.12 E-value=2.2e-09 Score=80.39 Aligned_cols=100 Identities=24% Similarity=0.326 Sum_probs=81.5
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027386 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIE 163 (224)
Q Consensus 84 ~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~ 163 (224)
+..+|..+|.+++|.|++.||..++..... ......+..+|..+|.+++|. |+..||..++.... ....+.+.
T Consensus 19 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~-~~~~~~~~~l~~~~d~~~~g~-i~~~eF~~~~~~~~---~~~~~~~~-- 91 (158)
T PTZ00183 19 IREAFDLFDTDGSGTIDPKELKVAMRSLGF-EPKKEEIKQMIADVDKDGSGK-IDFEEFLDIMTKKL---GERDPREE-- 91 (158)
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCc-EeHHHHHHHHHHHh---cCCCcHHH--
Confidence 578899999999999999999999976643 345667999999999999999 99999999875432 12233333
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 164 TIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 164 ~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
+..+|..+|.+++|.|+.+||..++..
T Consensus 92 --l~~~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 92 --ILKAFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred --HHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 455669999999999999999999875
No 23
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.10 E-value=6.8e-10 Score=75.08 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=58.1
Q ss_pred HHHHHHHHHhC-CCCCC-CcccHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 119 DKIEFSFQLYD-LKQQG-FFIERQEVKQMVVATLAE-SGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 119 ~~l~~~F~~~D-~~~~G-~~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
..++.+|+.|| ++|+| + |+.+||+.++++-++. .|...++++++.++ ..+|.|++|+|+|++|+.++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~-I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i----~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHK-LKKSELKELINNELSHFLEEIKEQEVVDKVM----ETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCE-ECHHHHHHHHHHHhHHHhcCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHH
Confidence 45889999998 79999 9 9999999998871111 26778888888888 7899999999999999988764
No 24
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.08 E-value=3.1e-09 Score=81.63 Aligned_cols=123 Identities=22% Similarity=0.272 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHhccCCcchHHHHHHHHHHcCCC-CCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHH
Q 027386 63 LINKEEFQLALFKTNKKESLFADRVFDLFDTKH-NGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQE 141 (224)
Q Consensus 63 ~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~-~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e 141 (224)
.++.+.+..+..... -....++.+++.|-.+. +|.++-++|..+.+.+-+.++...-...+|+.||.|++|. |+..|
T Consensus 8 ~~~~~~~e~l~~~t~-f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~-i~F~E 85 (193)
T KOG0044|consen 8 KLQPESLEQLVQQTK-FSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGT-IDFLE 85 (193)
T ss_pred cCCcHHHHHHHHhcC-CCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCC-cCHHH
Confidence 344444444432222 23344778888887655 7999999999999998877889999999999999999999 99999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChh
Q 027386 142 VKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPS 195 (224)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~~~ 195 (224)
|..++..++++ .+++..+.+|+.+|.|++|+||++|++.++...-.
T Consensus 86 fi~als~~~rG--------t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~ 131 (193)
T KOG0044|consen 86 FICALSLTSRG--------TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQ 131 (193)
T ss_pred HHHHHHHHcCC--------cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHH
Confidence 88887654222 24556678899999999999999999998876433
No 25
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.06 E-value=1.5e-09 Score=83.31 Aligned_cols=122 Identities=20% Similarity=0.303 Sum_probs=90.8
Q ss_pred hhhhhHhhhhhhcCCCC-CCCCCCCcHHHHHHhcCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchH-
Q 027386 5 IEGFKHLFASLLQCCDT-NPSRGLEDPEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESL- 82 (224)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~- 82 (224)
++=|+-|..+ ++...+ +... .|.+.|++. |+.++.+|..+|+| ++|.|+..||+.+|...+...++
T Consensus 93 ~~TcrlmI~m-fd~~~~G~i~f--~EF~~Lw~~-------i~~Wr~vF~~~D~D--~SG~I~~sEL~~Al~~~Gy~Lspq 160 (221)
T KOG0037|consen 93 IETCRLMISM-FDRDNSGTIGF--KEFKALWKY-------INQWRNVFRTYDRD--RSGTIDSSELRQALTQLGYRLSPQ 160 (221)
T ss_pred HHHHHHHHHH-hcCCCCCccCH--HHHHHHHHH-------HHHHHHHHHhcccC--CCCcccHHHHHHHHHHcCcCCCHH
Confidence 3445666664 333332 3333 677777777 88999999999999 99999999999999888866554
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCc-ccHHHHHHH
Q 027386 83 FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFF-IERQEVKQM 145 (224)
Q Consensus 83 ~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~-I~~~e~~~~ 145 (224)
..+.|++.+|..+.|.|.|++|+.++..+.. +-.+|+.+|.+.+|.+ ++.++|..+
T Consensus 161 ~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~-------lt~~Fr~~D~~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 161 FYNLLVRKYDRFGGGRIDFDDFIQCCVVLQR-------LTEAFRRRDTAQQGSITISYDDFLQM 217 (221)
T ss_pred HHHHHHHHhccccCCceeHHHHHHHHHHHHH-------HHHHHHHhccccceeEEEeHHHHHHH
Confidence 4677888898777899999999998877654 7778999999988861 455665554
No 26
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.00 E-value=1.1e-08 Score=76.15 Aligned_cols=100 Identities=20% Similarity=0.312 Sum_probs=84.2
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027386 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIE 163 (224)
Q Consensus 84 ~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~ 163 (224)
+++.|..+|.+++|.|+..++..++..+-. ..+...+..+|..+|. +.+. |+..+|..+|...+ ...-+++++.
T Consensus 22 lkeaF~l~D~d~~G~I~~~el~~ilr~lg~-~~s~~ei~~l~~~~d~-~~~~-idf~~Fl~~ms~~~---~~~~~~Eel~ 95 (160)
T COG5126 22 LKEAFQLFDRDSDGLIDRNELGKILRSLGF-NPSEAEINKLFEEIDA-GNET-VDFPEFLTVMSVKL---KRGDKEEELR 95 (160)
T ss_pred HHHHHHHhCcCCCCCCcHHHHHHHHHHcCC-CCcHHHHHHHHHhccC-CCCc-cCHHHHHHHHHHHh---ccCCcHHHHH
Confidence 577899999999999999999999985444 7888899999999999 9999 99999999986552 2334556654
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhC
Q 027386 164 TIIDKTFEEADTKHDGKIDKEEWRSLVLRH 193 (224)
Q Consensus 164 ~~~~~~f~~~d~~~dg~It~~eF~~~~~~~ 193 (224)
..+ +.+|.|++|+|+..++++++...
T Consensus 96 ~aF----~~fD~d~dG~Is~~eL~~vl~~l 121 (160)
T COG5126 96 EAF----KLFDKDHDGYISIGELRRVLKSL 121 (160)
T ss_pred HHH----HHhCCCCCceecHHHHHHHHHhh
Confidence 444 99999999999999999999863
No 27
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.98 E-value=3.9e-09 Score=72.21 Aligned_cols=69 Identities=19% Similarity=0.343 Sum_probs=55.5
Q ss_pred HHHHHHHHHhC-CCCCC-CcccHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 119 DKIEFSFQLYD-LKQQG-FFIERQEVKQMVVATLAE-SGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 119 ~~l~~~F~~~D-~~~~G-~~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
..++.+|+.|| .|++| + |+..||+.+++..+.. .....++.++++++ ..+|.|++|.|+|+||+.++..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~-Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~----~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYK-LSKGELKELLQRELTDFLSSQKDPMLVDKIM----NDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCE-ECHHHHHHHHHHHhHHhcccccCHHHHHHHH----HHhCCCCCCCCCHHHHHHHHHH
Confidence 35788899999 78998 8 9999999998763221 23344667777777 8999999999999999998875
No 28
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.97 E-value=5.7e-09 Score=71.90 Aligned_cols=85 Identities=22% Similarity=0.327 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhH
Q 027386 118 DDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLL 197 (224)
Q Consensus 118 ~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~~~l~ 197 (224)
...++.+|+.+|.+++|. |+.+|++.+++.. + ++++++..++ ..+|.+++|.|+|+||+.++....
T Consensus 9 ~~~l~~~F~~~D~d~~G~-Is~~el~~~l~~~----~--~~~~ev~~i~----~~~d~~~~g~I~~~eF~~~~~~~~--- 74 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGT-VTGAQAKPILLKS----G--LPQTLLAKIW----NLADIDNDGELDKDEFALAMHLIY--- 74 (96)
T ss_pred HHHHHHHHHHhCCCCCCe-EeHHHHHHHHHHc----C--CCHHHHHHHH----HHhcCCCCCCcCHHHHHHHHHHHH---
Confidence 456899999999999999 9999999998653 3 6777777776 789999999999999999888522
Q ss_pred hhhccccccccccccccccccc
Q 027386 198 KNMTLQYLKDITTTFPSFVFHS 219 (224)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~ 219 (224)
.+.....+..++|..+..+
T Consensus 75 ---~~~~g~~~~~~~~~~~~~~ 93 (96)
T smart00027 75 ---RKLNGYPIPASLPPSLIPP 93 (96)
T ss_pred ---HHHcCCCCCccCCHhhcCC
Confidence 2334677788888877654
No 29
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.94 E-value=5.4e-09 Score=71.71 Aligned_cols=70 Identities=24% Similarity=0.409 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCC-CC-CCCcccHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 118 DDKIEFSFQLYDL-KQ-QGFFIERQEVKQMVVATLAE-SGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 118 ~~~l~~~F~~~D~-~~-~G~~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
...+..+|..||. ++ +|+ |+.+|++.++++.+.. .|...++++++.++ ..+|.+++|.|+|++|+.++..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~-Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~----~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNT-LSRKELKKLMEKELSEFLKNQKDPMAVDKIM----KDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccCCCCCe-ECHHHHHHHHHHHhHHHhhccccHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHH
Confidence 3468899999997 87 699 9999999998763221 35677888888777 7999999999999999998875
No 30
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.93 E-value=9.6e-09 Score=70.18 Aligned_cols=72 Identities=19% Similarity=0.332 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhC-CCCCC-CcccHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhCh
Q 027386 118 DDKIEFSFQLYD-LKQQG-FFIERQEVKQMVVATLAE-SGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHP 194 (224)
Q Consensus 118 ~~~l~~~F~~~D-~~~~G-~~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~~ 194 (224)
.+.++.+|+.|| .+++| . |+..||+.+++..+.. .+...++++++.++ ..+|.+++|.|+|++|+.++....
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~-Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~----~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYK-LSKKELKDLLQTELSDFLDAQKDADAVDKIM----KELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCe-ECHHHHHHHHHHHHHHHccCCCCHHHHHHHH----HHHCCCCCCcCcHHHHHHHHHHHH
Confidence 456899999997 99999 8 9999999999752211 23346777877777 889999999999999999888643
No 31
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.92 E-value=2.5e-09 Score=68.26 Aligned_cols=61 Identities=36% Similarity=0.574 Sum_probs=41.2
Q ss_pred HHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcc-----hHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027386 46 ALYELFKKISSAVIDDGLINKEEFQLALFKTNKKE-----SLFADRVFDLFDTKHNGILGFEEFARAL 108 (224)
Q Consensus 46 ~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~-----~~~~~~lf~~~d~~~~g~I~f~Ef~~~~ 108 (224)
+|+..|+.+|.+ ++|+|+.+||..++...+... ...++.+|+.+|.|++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d--~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKD--GDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTT--SSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCC--ccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 356777777777 778888888777776644321 2335556777777777777777777653
No 32
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.90 E-value=8.7e-09 Score=69.67 Aligned_cols=69 Identities=23% Similarity=0.271 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhcc-cCcCCCCCCHHHHHHHHhc-cCCc-ch-HHHHHHHHHHcCCCCCcccHHHHHHHHhhhC
Q 027386 42 SEIEALYELFKKISS-AVIDDGLINKEEFQLALFK-TNKK-ES-LFADRVFDLFDTKHNGILGFEEFARALSVFH 112 (224)
Q Consensus 42 ~~i~~l~~~F~~~d~-~~~~~g~i~~~ef~~~l~~-~~~~-~~-~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~ 112 (224)
..+..|...|+.+|+ + ++|+|+..+|+.++.. .+.. .. ..++.++..+|.|++|.|+|+||+..+..+.
T Consensus 5 ~ai~~l~~~F~~fd~~~--~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 5 KAIETLVSNFHKASVKG--GKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHHhCCC--CCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 347889999999999 8 9999999999999977 4422 23 5689999999999999999999999887654
No 33
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.89 E-value=1e-08 Score=69.34 Aligned_cols=67 Identities=19% Similarity=0.378 Sum_probs=56.6
Q ss_pred HHHHHHHHhCC-CC-CCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 120 KIEFSFQLYDL-KQ-QGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 120 ~l~~~F~~~D~-~~-~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
.+-.+|..||. +| +|+ |+.+||+.++.... ..|..++++++++++ ..+|.|++|+|+|+||+.++..
T Consensus 11 ~~i~~F~~y~~~~~~~g~-Is~~EL~~~l~~~~-~lg~k~t~~ev~~m~----~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 11 LLVAIFHKYSGREGDKNT-LSKKELKELIQKEL-TIGSKLQDAEIAKLM----EDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHccCCCCCE-ECHHHHHHHHHHHH-hcCCCCCHHHHHHHH----HHhcCCCCCCCcHHHHHHHHHH
Confidence 46778999998 67 899 99999999985311 247889999988888 7899999999999999988875
No 34
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.87 E-value=1.8e-08 Score=69.36 Aligned_cols=72 Identities=19% Similarity=0.375 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhC
Q 027386 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFH 112 (224)
Q Consensus 38 ~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~ 112 (224)
.+|.+++..+...|..+|.+ ++|.|+.+++..++...+. ....+..++..+|.+++|.|+|+||+.++....
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d--~~G~Is~~el~~~l~~~~~-~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKN--QDGTVTGAQAKPILLKSGL-PQTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCC--CCCeEeHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 57889999999999999999 9999999999999877654 345588899999999999999999998886544
No 35
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.84 E-value=1.5e-08 Score=64.67 Aligned_cols=62 Identities=31% Similarity=0.462 Sum_probs=52.6
Q ss_pred HHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhCh
Q 027386 122 EFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHP 194 (224)
Q Consensus 122 ~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~~ 194 (224)
+.+|+.+|.+++|. |+.+|+..++... | .+++++..++ ..+|.+++|.|+|+||+.++...+
T Consensus 2 ~~~F~~~D~~~~G~-i~~~el~~~l~~~----g--~~~~~~~~i~----~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGL-ISGDEARPFLGKS----G--LPRSVLAQIW----DLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCc-CcHHHHHHHHHHc----C--CCHHHHHHHH----HHhcCCCCCcCCHHHHHHHHHHHH
Confidence 56899999999999 9999999998654 4 4777766666 899999999999999999887543
No 36
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.82 E-value=2e-08 Score=81.34 Aligned_cols=153 Identities=18% Similarity=0.233 Sum_probs=113.6
Q ss_pred HHhcCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCC
Q 027386 34 ARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHP 113 (224)
Q Consensus 34 ~~~~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~ 113 (224)
.+...+....+..=-..|-...+. .+.+.|...+|...+ ..+.+.....+|..||.+++|.++|.|.+..++.+|.
T Consensus 215 ~r~lkL~~~gl~k~ld~y~~var~-~kg~~igi~efa~~l---~vpvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~ 290 (412)
T KOG4666|consen 215 RRVLKLPLVGLIKKLDGYVYVARE-AKGPDIGIVEFAVNL---RVPVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCG 290 (412)
T ss_pred HhccCCChHHHHHHHhhHHHHHHh-ccCCCcceeEeeeee---ecchhhhhhhhhheecCCCCCcccHHHHhhhheeeeC
Confidence 333445544443333333333332 156677777777554 4444555778999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhC
Q 027386 114 NAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRH 193 (224)
Q Consensus 114 ~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~ 193 (224)
.....+.++.+|+.|+.+.||+ +...+|.-+++..+.-. .+. +-.+|..++...+|+|++.+|.+++..+
T Consensus 291 p~~t~~iiq~afk~f~v~eDg~-~ge~~ls~ilq~~lgv~--~l~-------v~~lf~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 291 PPVTPVIIQYAFKRFSVAEDGI-SGEHILSLILQVVLGVE--VLR-------VPVLFPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred CCCcHHHHHHHHHhcccccccc-cchHHHHHHHHHhcCcc--eee-------ccccchhhhcccCcceeHHHHHHHHHhC
Confidence 7788899999999999999999 99999999888763211 122 2345588899999999999999999999
Q ss_pred hhhHhhh
Q 027386 194 PSLLKNM 200 (224)
Q Consensus 194 ~~l~~~~ 200 (224)
|++..++
T Consensus 361 p~~a~~~ 367 (412)
T KOG4666|consen 361 PNLALSE 367 (412)
T ss_pred chhhhhh
Confidence 9987544
No 37
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=1e-07 Score=69.78 Aligned_cols=101 Identities=19% Similarity=0.291 Sum_probs=85.4
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027386 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIE 163 (224)
Q Consensus 84 ~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~ 163 (224)
++..|..||.+++|.|++.|+-.++.++-- ....+.+..+..-+|+++.|. |+.++|+.++... .+..-+.+++.
T Consensus 35 i~e~f~lfd~~~~g~iD~~EL~vAmralGF-E~~k~ei~kll~d~dk~~~g~-i~fe~f~~~mt~k---~~e~dt~eEi~ 109 (172)
T KOG0028|consen 35 IKEAFELFDPDMAGKIDVEELKVAMRALGF-EPKKEEILKLLADVDKEGSGK-ITFEDFRRVMTVK---LGERDTKEEIK 109 (172)
T ss_pred HHHHHHhhccCCCCcccHHHHHHHHHHcCC-CcchHHHHHHHHhhhhccCce-echHHHHHHHHHH---HhccCcHHHHH
Confidence 577899999999999999999777777664 455677888999999999999 9999999997654 35445888877
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhC
Q 027386 164 TIIDKTFEEADTKHDGKIDKEEWRSLVLRH 193 (224)
Q Consensus 164 ~~~~~~f~~~d~~~dg~It~~eF~~~~~~~ 193 (224)
.++ ..+|.+++|.|++.+|.+.....
T Consensus 110 ~af----rl~D~D~~Gkis~~~lkrvakeL 135 (172)
T KOG0028|consen 110 KAF----RLFDDDKTGKISQRNLKRVAKEL 135 (172)
T ss_pred HHH----HcccccCCCCcCHHHHHHHHHHh
Confidence 777 88999999999999999998873
No 38
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.80 E-value=3.8e-08 Score=67.32 Aligned_cols=68 Identities=19% Similarity=0.455 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhc-ccCcCCC-CCCHHHHHHHHhcc------CCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhC
Q 027386 43 EIEALYELFKKIS-SAVIDDG-LINKEEFQLALFKT------NKKESLFADRVFDLFDTKHNGILGFEEFARALSVFH 112 (224)
Q Consensus 43 ~i~~l~~~F~~~d-~~~~~~g-~i~~~ef~~~l~~~------~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~ 112 (224)
.+..+.+.|+.+| .+ ++| +|+..||+.++... .......++.++..+|.|++|.|+|+||+..+..+.
T Consensus 8 a~~~~~~~F~~~dd~d--gdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 8 AMDTLIRIFHNYSGKE--GDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHccC--CCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 3788999999999 67 888 59999999998541 222445689999999999999999999999887654
No 39
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.79 E-value=5.1e-08 Score=65.95 Aligned_cols=70 Identities=20% Similarity=0.368 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhCC--CCCCCcccHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 118 DDKIEFSFQLYDL--KQQGFFIERQEVKQMVVATLAE-SGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 118 ~~~l~~~F~~~D~--~~~G~~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
.+.++.+|..||. +++|. |+.+||..+++..+.. .+...+.++++.++ ..+|.+++|.|+|++|+.++..
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~-Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~----~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDT-LSKKELKELLETELPNFLKNQKDPEAVDKIM----KDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHhhccCCCCc-CcHHHHHHHHHHHhhhhccCCCCHHHHHHHH----HHhccCCCCcCcHHHHHHHHHH
Confidence 3568889999999 89999 9999999998752211 12334577777776 8999999999999999998875
No 40
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.78 E-value=4.1e-08 Score=66.37 Aligned_cols=68 Identities=22% Similarity=0.389 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhc-ccCcCCC-CCCHHHHHHHHhc-----cCCc-chHHHHHHHHHHcCCCCCcccHHHHHHHHhhhC
Q 027386 43 EIEALYELFKKIS-SAVIDDG-LINKEEFQLALFK-----TNKK-ESLFADRVFDLFDTKHNGILGFEEFARALSVFH 112 (224)
Q Consensus 43 ~i~~l~~~F~~~d-~~~~~~g-~i~~~ef~~~l~~-----~~~~-~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~ 112 (224)
-+..+...|+.+| ++ ++| .|+..+|+.++.. .+.. ....++++++.+|.|++|.|+|+||+..+....
T Consensus 6 ~~~~l~~aF~~fD~~d--gdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 6 AMVALIDVFHQYSGRE--GDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHHhcccC--CCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4788999999998 68 999 5999999999987 5543 445599999999999999999999998886543
No 41
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.77 E-value=2.6e-08 Score=60.93 Aligned_cols=52 Identities=31% Similarity=0.558 Sum_probs=45.7
Q ss_pred CCCCcccHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 132 QQGFFIERQEVKQMVVATLAESGMN-LSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 132 ~~G~~I~~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
.+|. |+.++|+.++..+ |.. ++++++..++ ..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~-i~~~~~~~~l~~~----g~~~~s~~e~~~l~----~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGK-ITREEFRRALSKL----GIKDLSEEEVDRLF----REFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSE-EEHHHHHHHHHHT----TSSSSCHHHHHHHH----HHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCE-ECHHHHHHHHHHh----CCCCCCHHHHHHHH----HhcccCCCCCCCHHHHHHHHHh
Confidence 3688 9999999998544 777 9999988888 8999999999999999998864
No 42
>PLN02964 phosphatidylserine decarboxylase
Probab=98.77 E-value=9.6e-08 Score=85.74 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHhc--cC--CcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHH--HHHHHHHHhCCCCCCC
Q 027386 62 GLINKEEFQLALFK--TN--KKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDD--KIEFSFQLYDLKQQGF 135 (224)
Q Consensus 62 g~i~~~ef~~~l~~--~~--~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~--~l~~~F~~~D~~~~G~ 135 (224)
..++.+++...... .. ......+.+.|..+|.|++|.+ ....+..+.. ...+..+ .++.+|+.+|.+++|.
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~--~~pte~e~~fi~~mf~~~D~DgdG~ 195 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSCSI--EDPVETERSFARRILAIVDYDEDGQ 195 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCCCCCe
Confidence 34666666644322 11 1122336778999999999987 4444444321 1123333 3899999999999999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhC
Q 027386 136 FIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRH 193 (224)
Q Consensus 136 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~ 193 (224)
|+.+||..++..+ +...+++++..++ ..+|.|++|.|+++||.+++...
T Consensus 196 -IdfdEFl~lL~~l----g~~~seEEL~eaF----k~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 196 -LSFSEFSDLIKAF----GNLVAANKKEELF----KAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred -EcHHHHHHHHHHh----ccCCCHHHHHHHH----HHhCCCCCCcCCHHHHHHHHHhc
Confidence 9999999998764 5566777766655 89999999999999999999874
No 43
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.73 E-value=9.2e-08 Score=73.41 Aligned_cols=97 Identities=19% Similarity=0.258 Sum_probs=77.3
Q ss_pred HHHHHhhcccCcCCCC-CCHHHHHHHHhccCC--cchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCCh------H
Q 027386 48 YELFKKISSAVIDDGL-INKEEFQLALFKTNK--KESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPI------D 118 (224)
Q Consensus 48 ~~~F~~~d~~~~~~g~-i~~~ef~~~l~~~~~--~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~------~ 118 (224)
..+++.++.+ ++|. |+.++|.+.+..... .....++-.|+.+|.+++|.|+.+|+...+..+...... .
T Consensus 69 ~rI~~~f~~~--~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~ 146 (187)
T KOG0034|consen 69 DRIIDRFDTD--GNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLE 146 (187)
T ss_pred HHHHHHHhcc--CCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHH
Confidence 4566777777 7777 999999998865332 223357779999999999999999999999887763222 3
Q ss_pred HHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 027386 119 DKIEFSFQLYDLKQQGFFIERQEVKQMVV 147 (224)
Q Consensus 119 ~~l~~~F~~~D~~~~G~~I~~~e~~~~l~ 147 (224)
+.+...|..+|.++||. |+.+|+.+++.
T Consensus 147 ~i~d~t~~e~D~d~DG~-IsfeEf~~~v~ 174 (187)
T KOG0034|consen 147 DIVDKTFEEADTDGDGK-ISFEEFCKVVE 174 (187)
T ss_pred HHHHHHHHHhCCCCCCc-CcHHHHHHHHH
Confidence 45777899999999999 99999999974
No 44
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.72 E-value=1.1e-07 Score=64.40 Aligned_cols=69 Identities=17% Similarity=0.285 Sum_probs=54.8
Q ss_pred HHHHHHHHH-hCCCCCC-CcccHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 119 DKIEFSFQL-YDLKQQG-FFIERQEVKQMVVATLAE-SGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 119 ~~l~~~F~~-~D~~~~G-~~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
..+..+|+. +|.+|+| . |+.+||+.++..-+.. .+...++.++++++ ..+|.|+||.|+|+||++++..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~-Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll----~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQ-LSKTEFLSFMNTELASFTKNQKDPGVLDRMM----KKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHhccCCCcCe-ECHHHHHHHHHHhhhHhhcCCCCHHHHHHHH----HHcCCCCCCcCcHHHHHHHHHH
Confidence 457889999 6788876 8 9999999998765322 12345667777777 8999999999999999998875
No 45
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.71 E-value=7.2e-08 Score=68.40 Aligned_cols=63 Identities=24% Similarity=0.431 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 117 IDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 117 ~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
....+..+|..+|.|+||+ |+.+|+..+. + ... +..+..+|..+|.|+||.||++||...+.+
T Consensus 46 ~~~~l~w~F~~lD~d~DG~-Ls~~EL~~~~--l------~~~----e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGK-LSHHELAPIR--L------DPN----EHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHCCCCCCc-CCHHHHHHHH--c------cch----HHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 4567999999999999999 9999999874 1 122 334455669999999999999999999944
No 46
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.70 E-value=1.3e-07 Score=58.64 Aligned_cols=61 Identities=36% Similarity=0.589 Sum_probs=53.0
Q ss_pred HHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 027386 121 IEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLV 190 (224)
Q Consensus 121 l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~ 190 (224)
++.+|+.+|.+++|. |+..|+..++... +...+.+.+..++ ..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~-l~~~e~~~~l~~~----~~~~~~~~~~~~~----~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGT-ISADELKAALKSL----GEGLSEEEIDEMI----REVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCc-CcHHHHHHHHHHh----CCCCCHHHHHHHH----HHhCCCCCCeEeHHHHHHHh
Confidence 567899999999999 9999999998765 7777877766666 89999999999999998875
No 47
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.69 E-value=1.5e-07 Score=63.67 Aligned_cols=68 Identities=18% Similarity=0.313 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhcc-cCcC-CCCCCHHHHHHHHhc---cCC-cchHHHHHHHHHHcCCCCCcccHHHHHHHHhhh
Q 027386 42 SEIEALYELFKKISS-AVID-DGLINKEEFQLALFK---TNK-KESLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (224)
Q Consensus 42 ~~i~~l~~~F~~~d~-~~~~-~g~i~~~ef~~~l~~---~~~-~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~ 111 (224)
+.+..+...|++++. + + +|+|+.+||+.++.. .+. .....++++++.+|.|++|.|+|+||+..+..+
T Consensus 7 ~~~~~~i~~F~~y~~~~--~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 7 QAIGLLVAIFHKYSGRE--GDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHccC--CCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 457889999999998 5 5 789999999999952 343 355679999999999999999999999888654
No 48
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.67 E-value=1.3e-07 Score=63.93 Aligned_cols=69 Identities=23% Similarity=0.413 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhhcc--cCcCCCCCCHHHHHHHHhc-cCC-----cchHHHHHHHHHHcCCCCCcccHHHHHHHHhhh
Q 027386 41 VSEIEALYELFKKISS--AVIDDGLINKEEFQLALFK-TNK-----KESLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (224)
Q Consensus 41 ~~~i~~l~~~F~~~d~--~~~~~g~i~~~ef~~~l~~-~~~-----~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~ 111 (224)
++++..++..|..+|+ + ++|.|+.++|..++.. .+. .....+..++..+|.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~--~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEG--DKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccC--CCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4678889999999999 8 9999999999998854 221 135668999999999999999999999988654
No 49
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.66 E-value=1.4e-07 Score=60.15 Aligned_cols=61 Identities=31% Similarity=0.465 Sum_probs=49.3
Q ss_pred HHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhh
Q 027386 48 YELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (224)
Q Consensus 48 ~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~ 111 (224)
++.|..+|.+ ++|.|+.+++..++...+. ....++.++..+|.+++|.|+|.||+.++...
T Consensus 2 ~~~F~~~D~~--~~G~i~~~el~~~l~~~g~-~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPD--GDGLISGDEARPFLGKSGL-PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCC--CCCcCcHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 4678888888 8899999999888876654 45557888999998889999999998877653
No 50
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.63 E-value=1.7e-06 Score=81.99 Aligned_cols=140 Identities=15% Similarity=0.283 Sum_probs=111.2
Q ss_pred cCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcc--------hHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027386 37 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKE--------SLFADRVFDLFDTKHNGILGFEEFARAL 108 (224)
Q Consensus 37 ~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~--------~~~~~~lf~~~d~~~~g~I~f~Ef~~~~ 108 (224)
++.|.+++.++.-+|+.||.+ .+|.++..+|..++.+.|... .+..++++...|++.+|.|+..+|+++|
T Consensus 2245 ~GVtEe~L~EFs~~fkhFDke--k~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2245 NGVTEEQLKEFSMMFKHFDKE--KNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred CCCCHHHHHHHHHHHHHhchh--hccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 679999999999999999999 999999999999998755332 3467899999999999999999999999
Q ss_pred hhhCCC-CChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCC----CCCcccH
Q 027386 109 SVFHPN-APIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTK----HDGKIDK 183 (224)
Q Consensus 109 ~~~~~~-~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~----~dg~It~ 183 (224)
..-.+. -...+.+..||+.+|. +.-| |+.+++..- +|+++++-.+..+-..+++. ..+.++|
T Consensus 2323 i~~ETeNI~s~~eIE~AfraL~a-~~~y-vtke~~~~~-----------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y 2389 (2399)
T KOG0040|consen 2323 ISKETENILSSEEIEDAFRALDA-GKPY-VTKEELYQN-----------LTREQAEFCMSKMKPYAETSSGRSDQVALDY 2389 (2399)
T ss_pred HhcccccccchHHHHHHHHHhhc-CCcc-ccHHHHHhc-----------CCHHHHHHHHHHhhhhcccccCCCccccccH
Confidence 764431 1233579999999998 7778 999988664 66676666665554566653 2346899
Q ss_pred HHHHHHHH
Q 027386 184 EEWRSLVL 191 (224)
Q Consensus 184 ~eF~~~~~ 191 (224)
.+|.+.+-
T Consensus 2390 ~dfv~sl~ 2397 (2399)
T KOG0040|consen 2390 KDFVNSLF 2397 (2399)
T ss_pred HHHHHHHh
Confidence 99987654
No 51
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.63 E-value=2.4e-07 Score=62.73 Aligned_cols=69 Identities=26% Similarity=0.416 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHh-hcccCcCCC-CCCHHHHHHHHhcc-----C-CcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhC
Q 027386 42 SEIEALYELFKK-ISSAVIDDG-LINKEEFQLALFKT-----N-KKESLFADRVFDLFDTKHNGILGFEEFARALSVFH 112 (224)
Q Consensus 42 ~~i~~l~~~F~~-~d~~~~~~g-~i~~~ef~~~l~~~-----~-~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~ 112 (224)
+.+..|...|+. .|.+ ++| +|+.+||+.++... . ......++.++..+|.|++|.|+|+||+..+..+.
T Consensus 6 ~~i~~l~~~F~~y~~~d--g~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 6 RCIESLIAVFQKYAGKD--GDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHHhccC--CCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 347889999999 7777 765 99999999998653 1 22345689999999999999999999999886653
No 52
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.60 E-value=2.2e-07 Score=63.41 Aligned_cols=68 Identities=22% Similarity=0.402 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhc-ccCcCCCC-CCHHHHHHHHhc-cC-----CcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhC
Q 027386 43 EIEALYELFKKIS-SAVIDDGL-INKEEFQLALFK-TN-----KKESLFADRVFDLFDTKHNGILGFEEFARALSVFH 112 (224)
Q Consensus 43 ~i~~l~~~F~~~d-~~~~~~g~-i~~~ef~~~l~~-~~-----~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~ 112 (224)
-+..+++.|+.+| .+ ++|+ |+..++..++.. .+ .+....+++++..+|.+++|.|+|+||+.++..+.
T Consensus 7 ~~~~l~~~F~~fDd~d--g~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 7 AMETLINVFHAHSGKE--GDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHhccc--CCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 3677899999997 88 9994 999999999864 32 13456689999999999999999999998887654
No 53
>PF14658 EF-hand_9: EF-hand domain
Probab=98.59 E-value=2.8e-07 Score=57.91 Aligned_cols=61 Identities=13% Similarity=0.306 Sum_probs=54.8
Q ss_pred HHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHh
Q 027386 123 FSFQLYDLKQQGFFIERQEVKQMVVATLAESGM-NLSDDVIETIIDKTFEEADTKHD-GKIDKEEWRSLVLR 192 (224)
Q Consensus 123 ~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~-~~~~~~~~~~~~~~f~~~d~~~d-g~It~~eF~~~~~~ 192 (224)
.+|.+||.++.|. |...++..+|+++ +. ..++++++.+. +++|+++. |.|++++|..+|++
T Consensus 2 ~~F~~fD~~~tG~-V~v~~l~~~Lra~----~~~~p~e~~Lq~l~----~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGR-VPVSDLITYLRAV----TGRSPEESELQDLI----NELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCce-EeHHHHHHHHHHH----cCCCCcHHHHHHHH----HHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999 9999999999887 55 67888888888 89999887 99999999999875
No 54
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.55 E-value=4.9e-07 Score=64.17 Aligned_cols=64 Identities=13% Similarity=0.220 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027386 40 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARAL 108 (224)
Q Consensus 40 s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~ 108 (224)
.+.....+...|..+|.| ++|.|+.+|+..+. ..+....+..+|..+|.|++|.|+++||..++
T Consensus 43 ~~~~~~~l~w~F~~lD~d--~DG~Ls~~EL~~~~---l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGN--YDGKLSHHELAPIR---LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCC--CCCcCCHHHHHHHH---ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 456667788888888888 88888888888654 22334446778888888888888888888777
No 55
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.55 E-value=4.9e-07 Score=61.92 Aligned_cols=65 Identities=20% Similarity=0.429 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhcc-cCcC-CCCCCHHHHHHHHhc-----cC-CcchHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Q 027386 44 IEALYELFKKISS-AVID-DGLINKEEFQLALFK-----TN-KKESLFADRVFDLFDTKHNGILGFEEFARALSV 110 (224)
Q Consensus 44 i~~l~~~F~~~d~-~~~~-~g~i~~~ef~~~l~~-----~~-~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~ 110 (224)
...+...|..+|. + + +|.|+..++..++.. .+ ......++.++..+|.+++|.|+|+||+.++..
T Consensus 7 ~~~l~~~F~~~D~~d--g~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKD--GDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccC--CCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 5678899999987 7 7 699999999988764 12 234566888999999999999999999987754
No 56
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.53 E-value=7.4e-07 Score=75.10 Aligned_cols=133 Identities=19% Similarity=0.387 Sum_probs=94.2
Q ss_pred HHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccC-Cc---chHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHH
Q 027386 44 IEALYELFKKISSAVIDDGLINKEEFQLALFKTN-KK---ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDD 119 (224)
Q Consensus 44 i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~-~~---~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~ 119 (224)
.+-+.-.|..+|+. .+|.|+..+|..++-... .+ ...+.+++-..+..++. .|+++||.++..-+.. ..
T Consensus 317 ~Eil~lEF~~~~~~--~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~-gISl~Ef~~Ff~Fl~~----l~ 389 (489)
T KOG2643|consen 317 EEILELEFERFDKG--DSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGK-GISLQEFKAFFRFLNN----LN 389 (489)
T ss_pred HHHHHHHHHHhCcc--cccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCC-CcCHHHHHHHHHHHhh----hh
Confidence 44466789999987 789999999999774422 22 22345667777766644 4999999998865543 22
Q ss_pred HHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 120 KIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 120 ~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
.+..|...|-. -.+. |+..+|+++.... .|..+++..++-++ .-+|.|+||.|+++||+..+++
T Consensus 390 dfd~Al~fy~~-Ag~~-i~~~~f~raa~~v---tGveLSdhVvdvvF----~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 390 DFDIALRFYHM-AGAS-IDEKTFQRAAKVV---TGVELSDHVVDVVF----TIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHHHHHHHHH-cCCC-CCHHHHHHHHHHh---cCcccccceeeeEE----EEEccCCCCcccHHHHHHHHHH
Confidence 33444444422 2345 9999999987766 57888876544444 8999999999999999999876
No 57
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.51 E-value=1.6e-06 Score=72.69 Aligned_cols=118 Identities=19% Similarity=0.302 Sum_probs=91.7
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHH
Q 027386 83 FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVI 162 (224)
Q Consensus 83 ~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~ 162 (224)
.+..+|+.+|.+++|.|+..+...++..+..+....+..+..|..+|.|.+|. ++..||++.+..-
T Consensus 15 r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~-vDy~eF~~Y~~~~------------- 80 (463)
T KOG0036|consen 15 RIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGR-VDYSEFKRYLDNK------------- 80 (463)
T ss_pred HHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCc-ccHHHHHHHHHHh-------------
Confidence 46889999999999999999999988888774466778899999999999999 9999999997542
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhC------hhhHhhh-cccccccccccccc
Q 027386 163 ETIIDKTFEEADTKHDGKIDKEEWRSLVLRH------PSLLKNM-TLQYLKDITTTFPS 214 (224)
Q Consensus 163 ~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~------~~l~~~~-~~~~~~~~~~~~~~ 214 (224)
+.-+..+|+.+|.+.||+|+.+|..++++.. ....+++ +++..+.+++.|-.
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e 139 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEE 139 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHH
Confidence 2224456699999999999999999988762 1223333 44445555555433
No 58
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.50 E-value=1.2e-06 Score=58.97 Aligned_cols=68 Identities=19% Similarity=0.430 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhc------cCCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhC
Q 027386 42 SEIEALYELFKKISSAVIDDGLINKEEFQLALFK------TNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFH 112 (224)
Q Consensus 42 ~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~------~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~ 112 (224)
..+..|...|+++.++ .+.++..||+.++.. ........+++++...|.|+||.|+|+||+..+..+.
T Consensus 5 ~ai~~lI~~FhkYaG~---~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 5 HSMEKMMLTFHKFAGE---KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHHcCC---CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3477889999999964 679999999999854 1223455689999999999999999999999987654
No 59
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.46 E-value=8.8e-07 Score=69.43 Aligned_cols=146 Identities=17% Similarity=0.222 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccC---C-cchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCC--
Q 027386 43 EIEALYELFKKISSAVIDDGLINKEEFQLALFKTN---K-KESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAP-- 116 (224)
Q Consensus 43 ~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~---~-~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~-- 116 (224)
-.+.|..+|.+.|.| .+|.|+..++++.+.... . ......+--|++.|.|+||.|+++||..-+........
T Consensus 99 srrklmviFsKvDVN--tDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghseke 176 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVN--TDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKE 176 (362)
T ss_pred HHHHHHHHHhhcccC--ccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHH
Confidence 346789999999999 999999999999874411 0 01112345788999999999999999865543221100
Q ss_pred ---------------------------------------------------------hHHHHHHHHHHhCCCCCCCcccH
Q 027386 117 ---------------------------------------------------------IDDKIEFSFQLYDLKQQGFFIER 139 (224)
Q Consensus 117 ---------------------------------------------------------~~~~l~~~F~~~D~~~~G~~I~~ 139 (224)
....++.+-+.+|.|||.+ ++.
T Consensus 177 vadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkq-lSv 255 (362)
T KOG4251|consen 177 VADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQ-LSV 255 (362)
T ss_pred HHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCee-ecc
Confidence 0011455677889999999 999
Q ss_pred HHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 027386 140 QEVKQMVVATLAE-SGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVL 191 (224)
Q Consensus 140 ~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~ 191 (224)
.||.+........ -|..+.+.+++.-.+.+=..+|.|.||.+|++|...++.
T Consensus 256 peFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~d 308 (362)
T KOG4251|consen 256 PEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVD 308 (362)
T ss_pred hhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcC
Confidence 9998854322111 345667777777777776889999999999999988753
No 60
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.42 E-value=1.3e-06 Score=59.01 Aligned_cols=66 Identities=30% Similarity=0.496 Sum_probs=52.3
Q ss_pred HHHHHHHHHhCCC--CCCCcccHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 119 DKIEFSFQLYDLK--QQGFFIERQEVKQMVVATLAESGMNLS----DDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 119 ~~l~~~F~~~D~~--~~G~~I~~~e~~~~l~~~~~~~~~~~~----~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
..+...|+.|+.. .+|. |+.+||+.++...+ +..++ +++++.++ ..+|.+++|.|+|++|+.++..
T Consensus 8 ~~~~~~f~~y~~~~~~~~~-Is~~El~~ll~~~~---g~~~t~~~~~~~v~~i~----~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDT-LYKKEFKQLVEKEL---PNFLKKEKNQKAIDKIF----EDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHhccCCCccc-CCHHHHHHHHHHHh---hHhhccCCCHHHHHHHH----HHcCCCCCCcCcHHHHHHHHHH
Confidence 4577789999866 4789 99999999986432 33333 67777766 8999999999999999998875
No 61
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.39 E-value=2.3e-06 Score=52.82 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=27.9
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHH
Q 027386 86 RVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQ 144 (224)
Q Consensus 86 ~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~ 144 (224)
.+|..+|.+++|.|++.+|..++..... ....+.+..+|+.+|.+++|. |+.++|..
T Consensus 4 ~~f~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-l~~~ef~~ 60 (63)
T cd00051 4 EAFRLFDKDGDGTISADELKAALKSLGE-GLSEEEIDEMIREVDKDGDGK-IDFEEFLE 60 (63)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCe-EeHHHHHH
Confidence 3455555555555555555555544332 233444444555555555555 55555544
No 62
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.38 E-value=2.9e-06 Score=61.92 Aligned_cols=71 Identities=25% Similarity=0.537 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-----------------------------
Q 027386 118 DDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDK----------------------------- 168 (224)
Q Consensus 118 ~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~----------------------------- 168 (224)
-+.++.||.++|.|+||. |.+++++.++-++ |...++++++.|++.
T Consensus 31 IqEfKEAF~~mDqnrDG~-IdkeDL~d~~aSl----Gk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~ 105 (171)
T KOG0031|consen 31 IQEFKEAFNLMDQNRDGF-IDKEDLRDMLASL----GKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILN 105 (171)
T ss_pred HHHHHHHHHHHhccCCCc-ccHHHHHHHHHHc----CCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHH
Confidence 456888999999999999 9999999997776 777888888777763
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHhC
Q 027386 169 TFEEADTKHDGKIDKEEWRSLVLRH 193 (224)
Q Consensus 169 ~f~~~d~~~dg~It~~eF~~~~~~~ 193 (224)
+|..+|.++.|.|.-+.++.++...
T Consensus 106 AF~~FD~~~~G~I~~d~lre~Ltt~ 130 (171)
T KOG0031|consen 106 AFKTFDDEGSGKIDEDYLRELLTTM 130 (171)
T ss_pred HHHhcCccCCCccCHHHHHHHHHHh
Confidence 7899999999999999999999764
No 63
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.35 E-value=1.2e-06 Score=53.42 Aligned_cols=49 Identities=41% Similarity=0.626 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHhccCCc--chHHHHHHHHHHcCCCCCcccHHHHHHHHh
Q 027386 61 DGLINKEEFQLALFKTNKK--ESLFADRVFDLFDTKHNGILGFEEFARALS 109 (224)
Q Consensus 61 ~g~i~~~ef~~~l~~~~~~--~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~ 109 (224)
+|.|+.++|..++...+.. ....+..+|..+|.+++|.|+|.||+.++.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 5667777777766444322 333466677777777777777777776654
No 64
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.32 E-value=5.1e-06 Score=63.22 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=84.7
Q ss_pred HhcCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcc-hHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCC
Q 027386 35 RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKE-SLFADRVFDLFDTKHNGILGFEEFARALSVFHP 113 (224)
Q Consensus 35 ~~~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~-~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~ 113 (224)
....||.++|......|..+|.+ .+|+|+..|++.++.+++.+. ..-++.++...|.|.+|+|+|.||+.++.....
T Consensus 89 eF~eFsrkqIk~~~~~Fk~yDe~--rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 89 EFSEFSRKQIKDAESMFKQYDED--RDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred hhhHHHHHHHHHHHHHHHHhccc--ccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 33468999999999999999999 999999999999998887664 445788999999999999999999988876554
Q ss_pred CC-ChHHHHHHHHHH--hCCCCCCCcccHHHHHHH
Q 027386 114 NA-PIDDKIEFSFQL--YDLKQQGFFIERQEVKQM 145 (224)
Q Consensus 114 ~~-~~~~~l~~~F~~--~D~~~~G~~I~~~e~~~~ 145 (224)
.. ..+..+..+=+. .|....|+ .....|..+
T Consensus 167 gEL~~ds~~~~LAr~~eVDVskeGV-~GAknFFeA 200 (244)
T KOG0041|consen 167 GELQEDSGLLRLARLSEVDVSKEGV-SGAKNFFEA 200 (244)
T ss_pred cccccchHHHHHHHhcccchhhhhh-hhHHHHHHH
Confidence 21 112333333333 68888888 777777665
No 65
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.32 E-value=3.4e-06 Score=57.04 Aligned_cols=71 Identities=25% Similarity=0.333 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhc-cCCcc-----hHHHHHHHHHHcCCCCCcccHHHHHHHHhhhC
Q 027386 42 SEIEALYELFKKISSAVIDDGLINKEEFQLALFK-TNKKE-----SLFADRVFDLFDTKHNGILGFEEFARALSVFH 112 (224)
Q Consensus 42 ~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~-~~~~~-----~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~ 112 (224)
+.+..+...|+.++...-++|.|+.++|..++.. .+... ...++.+|..+|.+++|.|+|+||+.++....
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 3478889999999975113789999999999863 22212 56689999999999999999999999886543
No 66
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.31 E-value=1.8e-05 Score=67.90 Aligned_cols=150 Identities=18% Similarity=0.315 Sum_probs=105.0
Q ss_pred cCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhcc-C-Ccch-HHHHHHHHHHcCCCCCcccHHHHHHHHhhhCC
Q 027386 37 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKT-N-KKES-LFADRVFDLFDTKHNGILGFEEFARALSVFHP 113 (224)
Q Consensus 37 ~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~-~-~~~~-~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~ 113 (224)
++-.+++++.+.-.|...+.+ +..+++.++|....-.+ + ...+ ..+.-+-...|..+||.|+|+||..+-..+|.
T Consensus 28 kra~~~eLr~if~~~as~e~~--ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~ 105 (694)
T KOG0751|consen 28 KRADPKELRSIFLKYASIEKN--GESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCA 105 (694)
T ss_pred ccCChHHHHHHHHHHhHHhhc--cccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccC
Confidence 345667777777777777777 78899999998865331 1 2223 33444555667788999999999999998886
Q ss_pred CCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHh--cC-----------------CCCCHHHHHHHH--------
Q 027386 114 NAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAE--SG-----------------MNLSDDVIETII-------- 166 (224)
Q Consensus 114 ~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~--~~-----------------~~~~~~~~~~~~-------- 166 (224)
++.....+|..||+.++|. ++.+++.+++...--+ .- .++...++.+++
T Consensus 106 ---pDal~~~aFqlFDr~~~~~-vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~ 181 (694)
T KOG0751|consen 106 ---PDALFEVAFQLFDRLGNGE-VSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHA 181 (694)
T ss_pred ---chHHHHHHHHHhcccCCCc-eehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHH
Confidence 4777899999999999999 9999999997754111 00 112222222222
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 167 DKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 167 ~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
.+.|..-|..++|.||--+|...+..
T Consensus 182 ~qafr~~d~~~ng~is~Ldfq~imvt 207 (694)
T KOG0751|consen 182 EQAFREKDKAKNGFISVLDFQDIMVT 207 (694)
T ss_pred HHHHHHhcccCCCeeeeechHhhhhh
Confidence 24677788888888887777776655
No 67
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.23 E-value=1.6e-06 Score=45.75 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCCCCCcccHHHHHHHHH
Q 027386 121 IEFSFQLYDLKQQGFFIERQEVKQMVV 147 (224)
Q Consensus 121 l~~~F~~~D~~~~G~~I~~~e~~~~l~ 147 (224)
++.+|+.||+|++|+ |+.+||..++.
T Consensus 2 ~~~~F~~~D~d~dG~-I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGK-IDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSE-EEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCc-CCHHHHHHHHH
Confidence 566777777777777 77777777654
No 68
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.21 E-value=3.2e-05 Score=65.51 Aligned_cols=134 Identities=19% Similarity=0.301 Sum_probs=92.8
Q ss_pred HHHHHHHHhhcccCcCCCCCCHHHHHHHHhc------cCC----------cch-HH-HHHHHHHHcCCCCCcccHHHHHH
Q 027386 45 EALYELFKKISSAVIDDGLINKEEFQLALFK------TNK----------KES-LF-ADRVFDLFDTKHNGILGFEEFAR 106 (224)
Q Consensus 45 ~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~------~~~----------~~~-~~-~~~lf~~~d~~~~g~I~f~Ef~~ 106 (224)
+.++-.|..+|.| +||.|+.+||...... .+. ... .. ..-+...|..++++++++++|+.
T Consensus 233 ~~F~IAFKMFD~d--gnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~ 310 (489)
T KOG2643|consen 233 RNFRIAFKMFDLD--GNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLK 310 (489)
T ss_pred ccceeeeeeeecC--CCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHH
Confidence 3567789999999 9999999999875421 111 101 00 11244556788999999999999
Q ss_pred HHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHH
Q 027386 107 ALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEW 186 (224)
Q Consensus 107 ~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF 186 (224)
++..+. .+.++.-|..+|+..+|. |+..+|...+-.. .+... +....+.+..-..+..++. .||++||
T Consensus 311 F~e~Lq-----~Eil~lEF~~~~~~~~g~-Ise~DFA~~lL~~---a~~n~--~~k~~~lkrvk~kf~~~~~-gISl~Ef 378 (489)
T KOG2643|consen 311 FQENLQ-----EEILELEFERFDKGDSGA-ISEVDFAELLLAY---AGVNS--KKKHKYLKRVKEKFKDDGK-GISLQEF 378 (489)
T ss_pred HHHHHH-----HHHHHHHHHHhCcccccc-cCHHHHHHHHHHH---cccch--HhHHHHHHHHHHhccCCCC-CcCHHHH
Confidence 997654 567888899999999999 9999999987543 33222 2223334333356665544 4999998
Q ss_pred HHHHHh
Q 027386 187 RSLVLR 192 (224)
Q Consensus 187 ~~~~~~ 192 (224)
..+.+-
T Consensus 379 ~~Ff~F 384 (489)
T KOG2643|consen 379 KAFFRF 384 (489)
T ss_pred HHHHHH
Confidence 877653
No 69
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.17 E-value=7.9e-06 Score=62.21 Aligned_cols=65 Identities=28% Similarity=0.456 Sum_probs=55.7
Q ss_pred HHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 119 DKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 119 ~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
..+..+|+.||.+.||+ |+..|++.+|..+ |...+.=-...++ ...|.|.||+|||-+|+-+++.
T Consensus 99 k~~~~~Fk~yDe~rDgf-Idl~ELK~mmEKL----gapQTHL~lK~mi----keVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGF-IDLMELKRMMEKL----GAPQTHLGLKNMI----KEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHhccccccc-ccHHHHHHHHHHh----CCchhhHHHHHHH----HHhhcccccchhHHHHHHHHHH
Confidence 45788999999999999 9999999997765 7666655666666 8999999999999999988876
No 70
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.14 E-value=4.9e-06 Score=57.86 Aligned_cols=69 Identities=25% Similarity=0.468 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhh
Q 027386 39 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVF 111 (224)
Q Consensus 39 ~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~ 111 (224)
+++++.......|..++. .+|.|+..+...++...+++... +..||...|.+++|.++++||+.++...
T Consensus 4 ls~~e~~~y~~~F~~l~~---~~g~isg~~a~~~f~~S~L~~~~-L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDP---QDGKISGDQAREFFMKSGLPRDV-LAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp -SCCHHHHHHHHHHCTSS---STTEEEHHHHHHHHHHTTSSHHH-HHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC---CCCeEeHHHHHHHHHHcCCCHHH-HHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 567788899999999985 68999999999988777766644 7889999999999999999999988653
No 71
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.12 E-value=3.8e-05 Score=55.23 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCC--CCCCcccHHHHHHHHHHHHHhcCCCCCH
Q 027386 82 LFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLK--QQGFFIERQEVKQMVVATLAESGMNLSD 159 (224)
Q Consensus 82 ~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~--~~G~~I~~~e~~~~l~~~~~~~~~~~~~ 159 (224)
...+++|..||..+||+|++.+--..+..+-. .+....+..+...++.+ +-.. |++++|.-++.++... ...-+
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~-nPT~aeV~k~l~~~~~~~~~~~r-l~FE~fLpm~q~vakn-k~q~t- 86 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVLRALGQ-NPTNAEVLKVLGQPKRREMNVKR-LDFEEFLPMYQQVAKN-KDQGT- 86 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHhcC-CCcHHHHHHHHcCcccchhhhhh-hhHHHHHHHHHHHHhc-cccCc-
Confidence 45789999999999999999999988888776 45566677788888777 4567 9999999999887322 23334
Q ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhC
Q 027386 160 DVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRH 193 (224)
Q Consensus 160 ~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~ 193 (224)
.+.+++.+ ..+|..++|.|...|++..+...
T Consensus 87 --~edfvegL-rvFDkeg~G~i~~aeLRhvLttl 117 (152)
T KOG0030|consen 87 --YEDFVEGL-RVFDKEGNGTIMGAELRHVLTTL 117 (152)
T ss_pred --HHHHHHHH-HhhcccCCcceeHHHHHHHHHHH
Confidence 44445433 79999999999999999998763
No 72
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.08 E-value=4.3e-05 Score=51.51 Aligned_cols=68 Identities=16% Similarity=0.415 Sum_probs=51.3
Q ss_pred HHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 119 DKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAE-SGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 119 ~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
..+...|..|. .+.+. ++..||+.++..=++. .....+++.+++++ +..|.|+||.|+|.||+..+-.
T Consensus 8 ~~lI~~FhkYa-G~~~t-Lsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im----~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 8 EKMMLTFHKFA-GEKNY-LNRDDLQKLMEKEFSEFLKNQNDPMAVDKIM----KDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHc-CCCCc-CCHHHHHHHHHHHhHHHHcCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHH
Confidence 34667899998 44668 9999999998654332 22334566666666 8999999999999999988765
No 73
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.05 E-value=3.9e-05 Score=65.62 Aligned_cols=72 Identities=31% Similarity=0.425 Sum_probs=54.5
Q ss_pred ccHHHHHHHH-hhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCC
Q 027386 99 LGFEEFARAL-SVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKH 177 (224)
Q Consensus 99 I~f~Ef~~~~-~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~ 177 (224)
...++++... ............++.+|+.+|.+++|+ |+.+||.. ++.+|..+|.|+
T Consensus 313 ~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~-Is~~E~~~---------------------~~~~F~~~D~d~ 370 (391)
T PRK12309 313 ETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGF-ITREEWLG---------------------SDAVFDALDLNH 370 (391)
T ss_pred HHHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCc-CcHHHHHH---------------------HHHHHHHhCCCC
Confidence 3445555422 223344556778999999999999999 99999842 234558999999
Q ss_pred CCcccHHHHHHHHHh
Q 027386 178 DGKIDKEEWRSLVLR 192 (224)
Q Consensus 178 dg~It~~eF~~~~~~ 192 (224)
||.|+++||...+..
T Consensus 371 DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 371 DGKITPEEMRAGLGA 385 (391)
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999998875
No 74
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.05 E-value=6.8e-06 Score=43.31 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhh
Q 027386 84 ADRVFDLFDTKHNGILGFEEFARALSV 110 (224)
Q Consensus 84 ~~~lf~~~d~~~~g~I~f~Ef~~~~~~ 110 (224)
++++|+.+|.|++|.|+++||..++..
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 567888889989999999998888754
No 75
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.92 E-value=1.4e-05 Score=42.84 Aligned_cols=27 Identities=22% Similarity=0.636 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 027386 120 KIEFSFQLYDLKQQGFFIERQEVKQMVV 147 (224)
Q Consensus 120 ~l~~~F~~~D~~~~G~~I~~~e~~~~l~ 147 (224)
+++.+|+.||.|++|+ |+.+||..+++
T Consensus 1 ~l~~~F~~~D~d~dG~-I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGF-IDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSE-EEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCc-CcHHHHHHHHH
Confidence 4788999999999999 99999999976
No 76
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.89 E-value=5.9e-05 Score=59.36 Aligned_cols=136 Identities=20% Similarity=0.246 Sum_probs=94.9
Q ss_pred HHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccC--CcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCC---CC--
Q 027386 44 IEALYELFKKISSAVIDDGLINKEEFQLALFKTN--KKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPN---AP-- 116 (224)
Q Consensus 44 i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~--~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~---~~-- 116 (224)
++.+...+.+.|+-| .+-.++..+|...+.... ......+..|++.+|.|+|..++-.+|+.....-... .+
T Consensus 197 lenlkdRwyqaDspp-adlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdid 275 (362)
T KOG4251|consen 197 LENLKDRWYQADSPP-ADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDID 275 (362)
T ss_pred HHhhhhhhccccCch-hhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchH
Confidence 455666666776642 456688899998775422 2234568999999999999999999999866432211 11
Q ss_pred ---hHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 027386 117 ---IDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSL 189 (224)
Q Consensus 117 ---~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~ 189 (224)
.+.+.+..-..+|.|+||. +|++|+..++... +....-.++..++ ..-|.|++..++.++..+.
T Consensus 276 dnwvkdRkkEFeElIDsNhDGi-vTaeELe~y~dP~----n~~~alne~~~~m----a~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 276 DNWVKDRKKEFEELIDSNHDGI-VTAEELEDYVDPQ----NFRLALNEVNDIM----ALTDANNDEKLSLEELLER 342 (362)
T ss_pred HHHHHHHHHHHHHHhhcCCccc-eeHHHHHhhcCch----hhhhhHHHHHHHH----hhhccCCCcccCHHHHHHH
Confidence 1234566667789999999 9999999985432 3334444444444 6788899999999998663
No 77
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.87 E-value=9.1e-05 Score=53.72 Aligned_cols=96 Identities=16% Similarity=0.323 Sum_probs=74.3
Q ss_pred HHHHhhcccCcCCCCCCHHHHHHHHhc--cCCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHH--
Q 027386 49 ELFKKISSAVIDDGLINKEEFQLALFK--TNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFS-- 124 (224)
Q Consensus 49 ~~F~~~d~~~~~~g~i~~~ef~~~l~~--~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~-- 124 (224)
++...+..+ +.|-++.++|.+++.- ...+.+..+...|+.+|-|+|+.|.-.+....+..+.+++-..+....+
T Consensus 75 ri~e~FSeD--G~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~e 152 (189)
T KOG0038|consen 75 RICEVFSED--GRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICE 152 (189)
T ss_pred HHHHHhccC--CCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 444555667 8999999999998754 3344455567788999999999999999999998888766555554444
Q ss_pred --HHHhCCCCCCCcccHHHHHHHHH
Q 027386 125 --FQLYDLKQQGFFIERQEVKQMVV 147 (224)
Q Consensus 125 --F~~~D~~~~G~~I~~~e~~~~l~ 147 (224)
..--|.||||. ++..||..++.
T Consensus 153 kvieEAD~DgDgk-l~~~eFe~~i~ 176 (189)
T KOG0038|consen 153 KVIEEADLDGDGK-LSFAEFEHVIL 176 (189)
T ss_pred HHHHHhcCCCCCc-ccHHHHHHHHH
Confidence 44559999999 99999999863
No 78
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.80 E-value=7.3e-05 Score=64.68 Aligned_cols=76 Identities=18% Similarity=0.255 Sum_probs=64.9
Q ss_pred HhcCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcc----hHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Q 027386 35 RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKE----SLFADRVFDLFDTKHNGILGFEEFARALSV 110 (224)
Q Consensus 35 ~~~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~----~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~ 110 (224)
..+.||+++++.+.+.|..+| + ++|+++..++..++....... .+.++.+....+.|.+|.|+|++|+..+..
T Consensus 9 ~~~~~tq~El~~l~~kF~~~d-~--~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 9 LQSQLTQEELRELKEKFNKLD-D--QKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred hcccccHHHHHHHHHHHHhhc-C--CCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 345699999999999999999 7 899999999999997744443 667899999999999999999999996655
Q ss_pred hCC
Q 027386 111 FHP 113 (224)
Q Consensus 111 ~~~ 113 (224)
+.+
T Consensus 86 l~s 88 (627)
T KOG0046|consen 86 LKS 88 (627)
T ss_pred hhh
Confidence 443
No 79
>PF14658 EF-hand_9: EF-hand domain
Probab=97.73 E-value=0.00012 Score=46.14 Aligned_cols=58 Identities=14% Similarity=0.254 Sum_probs=35.6
Q ss_pred HHHhhcccCcCCCCCCHHHHHHHHhccC--CcchHHHHHHHHHHcCCCC-CcccHHHHHHHHh
Q 027386 50 LFKKISSAVIDDGLINKEEFQLALFKTN--KKESLFADRVFDLFDTKHN-GILGFEEFARALS 109 (224)
Q Consensus 50 ~F~~~d~~~~~~g~i~~~ef~~~l~~~~--~~~~~~~~~lf~~~d~~~~-g~I~f~Ef~~~~~ 109 (224)
.|..+|.+ +.|.|...++..+|...+ .+....++.+...+|+++. |.|+|+.|+..|.
T Consensus 3 ~F~~fD~~--~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFDTQ--KTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhhcCCc--CCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 46666666 666666666666665532 3344446666666666665 6666666666664
No 80
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.72 E-value=0.00018 Score=61.68 Aligned_cols=54 Identities=26% Similarity=0.426 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHH
Q 027386 81 SLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVAT 149 (224)
Q Consensus 81 ~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~ 149 (224)
...+..+|+.+|.+++|.|+.+||.. ...+|+.+|.|++|. |+.+||..++...
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~-Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGK-ITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCC-CcHHHHHHHHHHH
Confidence 44578899999999999999999952 467899999999999 9999999998765
No 81
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.72 E-value=4.8e-05 Score=38.58 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCCCCCcccHHHHHHH
Q 027386 121 IEFSFQLYDLKQQGFFIERQEVKQM 145 (224)
Q Consensus 121 l~~~F~~~D~~~~G~~I~~~e~~~~ 145 (224)
++.+|+.+|.|++|. |+.+||.++
T Consensus 1 l~~~F~~~D~d~DG~-is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGK-ISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSE-EEHHHHHHH
T ss_pred CHHHHHHHcCCCCCc-CCHHHHHHH
Confidence 345677777777777 777777764
No 82
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.68 E-value=0.0014 Score=59.46 Aligned_cols=168 Identities=14% Similarity=0.212 Sum_probs=124.4
Q ss_pred CCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCc-chHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCC
Q 027386 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAP 116 (224)
Q Consensus 38 ~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~ 116 (224)
......-..+...|+..|.+ .+|.++..+...++...... ....+.++|+..+..+++++...++..+...... .
T Consensus 129 ~~~~~~~~wi~~~~~~ad~~--~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~--r 204 (746)
T KOG0169|consen 129 RQRSRREHWIHSIFQEADKN--KNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTK--R 204 (746)
T ss_pred hhcchHHHHHHHHHHHHccc--cccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc--C
Confidence 34455567789999999999 99999999999888664433 2345788999998888999999999999888775 2
Q ss_pred hHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-Chh
Q 027386 117 IDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR-HPS 195 (224)
Q Consensus 117 ~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~-~~~ 195 (224)
+ .+...|..+-.+ .++ ++.+++..++... ....+.+.+.++++++..=..-...+.+.++++.|.+++.. ..+
T Consensus 205 p--ev~~~f~~~s~~-~~~-ls~~~L~~Fl~~~--q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~~~ 278 (746)
T KOG0169|consen 205 P--EVYFLFVQYSHG-KEY-LSTDDLLRFLEEE--QGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPDCN 278 (746)
T ss_pred c--hHHHHHHHHhCC-CCc-cCHHHHHHHHHHh--cccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCccCC
Confidence 2 688888888655 888 9999999998765 11245788888888843312222345667999999999976 233
Q ss_pred hHhhhccccccccccccccc
Q 027386 196 LLKNMTLQYLKDITTTFPSF 215 (224)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~ 215 (224)
..+..+-....||+.-...|
T Consensus 279 ~fdp~~~~V~qDM~qPLsHY 298 (746)
T KOG0169|consen 279 PFDPIHRKVHQDMDQPLSHY 298 (746)
T ss_pred CCCcccchhhhcccCcchhh
Confidence 44566677777887764444
No 83
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.00021 Score=49.71 Aligned_cols=65 Identities=28% Similarity=0.438 Sum_probs=53.1
Q ss_pred HHHHhCCCCCCCcccHHHHHHHHHHHHH--hcC----CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 027386 124 SFQLYDLKQQGFFIERQEVKQMVVATLA--ESG----MNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSL 189 (224)
Q Consensus 124 ~F~~~D~~~~G~~I~~~e~~~~l~~~~~--~~~----~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~ 189 (224)
-|+..|-|++|. ++--|+..++..... ..| +-.++.+.+.++..++..-|.|+||.|+|.||.+.
T Consensus 72 YF~MHDldknn~-lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNF-LDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCc-chHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 578889999999 998888888766533 222 34577899999999999999999999999999875
No 84
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.62 E-value=0.00057 Score=65.74 Aligned_cols=111 Identities=22% Similarity=0.354 Sum_probs=84.2
Q ss_pred CCCCCCHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCC------CChHHHHHHHHHHhCCCCC
Q 027386 60 DDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPN------APIDDKIEFSFQLYDLKQQ 133 (224)
Q Consensus 60 ~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~------~~~~~~l~~~F~~~D~~~~ 133 (224)
.+| |+.+.++.+ .-+|..||.+.+|.+++++|-.++..+-.. +.++..++....+.|++.+
T Consensus 2244 ~~G-VtEe~L~EF------------s~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~ 2310 (2399)
T KOG0040|consen 2244 HNG-VTEEQLKEF------------SMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRD 2310 (2399)
T ss_pred cCC-CCHHHHHHH------------HHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCc
Confidence 455 666666542 568999999999999999999999876543 3445689999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 027386 134 GFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVL 191 (224)
Q Consensus 134 G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~ 191 (224)
|+ |+..+...+|.. +++....+.++++..+ ..++. +..+|+.++....+.
T Consensus 2311 G~-Vsl~dY~afmi~--~ETeNI~s~~eIE~Af----raL~a-~~~yvtke~~~~~lt 2360 (2399)
T KOG0040|consen 2311 GY-VSLQDYMAFMIS--KETENILSSEEIEDAF----RALDA-GKPYVTKEELYQNLT 2360 (2399)
T ss_pred Cc-ccHHHHHHHHHh--cccccccchHHHHHHH----HHhhc-CCccccHHHHHhcCC
Confidence 99 999999998853 2333445666766666 77877 566888888755444
No 85
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.0012 Score=59.82 Aligned_cols=138 Identities=16% Similarity=0.284 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCC--CC-
Q 027386 39 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHP--NA- 115 (224)
Q Consensus 39 ~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~--~~- 115 (224)
.|.++...-...|..+.+ +.|+|+-.+-+.++...+++..- +..||...|.|+||+++..||..+|..... .+
T Consensus 10 vT~~Er~K~~~qF~~Lkp---~~gfitg~qArnfflqS~LP~~V-LaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~ 85 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLKP---GQGFITGDQARNFFLQSGLPTPV-LAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGI 85 (1118)
T ss_pred cchHHHHHHHHHHhccCC---CCCccchHhhhhhHHhcCCChHH-HHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCC
Confidence 566777777788888876 68999999999888777766655 577999999999999999999987732110 00
Q ss_pred --------------------------------------------------------------------------------
Q 027386 116 -------------------------------------------------------------------------------- 115 (224)
Q Consensus 116 -------------------------------------------------------------------------------- 115 (224)
T Consensus 86 ~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl 165 (1118)
T KOG1029|consen 86 QLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPL 165 (1118)
T ss_pred cCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred --------------------------ChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 027386 116 --------------------------PIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKT 169 (224)
Q Consensus 116 --------------------------~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 169 (224)
...-+++.+|+.+|+...|+ +|-..-+.+|.. ..++...+..+.
T Consensus 166 ~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~-Lsg~qaR~aL~q------S~Lpq~~LA~IW--- 235 (1118)
T KOG1029|consen 166 PHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGY-LSGQQARSALGQ------SGLPQNQLAHIW--- 235 (1118)
T ss_pred CCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccc-cccHHHHHHHHh------cCCchhhHhhhe---
Confidence 01124788999999999999 999999998753 357766655555
Q ss_pred HHHhCCCCCCcccHHHHHHHHH
Q 027386 170 FEEADTKHDGKIDKEEWRSLVL 191 (224)
Q Consensus 170 f~~~d~~~dg~It~~eF~~~~~ 191 (224)
..-|.|+||+++-+||.-.+.
T Consensus 236 -~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 236 -TLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred -eeeccCCCCcccHHHHHHHHH
Confidence 789999999999999987664
No 86
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.58 E-value=0.0001 Score=37.38 Aligned_cols=24 Identities=46% Similarity=0.711 Sum_probs=20.8
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHH
Q 027386 167 DKTFEEADTKHDGKIDKEEWRSLV 190 (224)
Q Consensus 167 ~~~f~~~d~~~dg~It~~eF~~~~ 190 (224)
+.+|..+|.|+||.||++||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 356799999999999999998854
No 87
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.45 E-value=0.00078 Score=58.18 Aligned_cols=64 Identities=16% Similarity=0.260 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 027386 118 DDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSL 189 (224)
Q Consensus 118 ~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~ 189 (224)
.|..+.+|+..|+.++|. |+.-+|...+..+ ..++....++..+- .....+...++|+-.|...
T Consensus 178 ~E~~~qafr~~d~~~ng~-is~Ldfq~imvt~----~~h~lt~~v~~nlv---~vagg~~~H~vSf~yf~af 241 (694)
T KOG0751|consen 178 LEHAEQAFREKDKAKNGF-ISVLDFQDIMVTI----RIHLLTPFVEENLV---SVAGGNDSHQVSFSYFNAF 241 (694)
T ss_pred HHHHHHHHHHhcccCCCe-eeeechHhhhhhh----hhhcCCHHHhhhhh---hhcCCCCccccchHHHHHH
Confidence 345788999999999999 9999999998776 33443333333331 2233333446777666543
No 88
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.40 E-value=0.00013 Score=51.67 Aligned_cols=64 Identities=14% Similarity=0.215 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCcccHHHHHH
Q 027386 40 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFAR 106 (224)
Q Consensus 40 s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~ 106 (224)
.......+...|..+|.| +||.++..|+..+...+ .+...=+...+..+|.|+||.|++.||..
T Consensus 49 ~~~~~~~~~W~F~~LD~n--~d~~L~~~El~~l~~~l-~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 49 YSECKRVVHWKFCQLDRN--KDGVLDRSELKPLRRPL-MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGGHHHHHHHHHHH--T---SSEE-TTTTGGGGSTT-STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhhHhhhcCC--CCCccCHHHHHHHHHHH-hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 334455666677777777 77777777766544322 22222245566777777777777777654
No 89
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.33 E-value=0.0013 Score=45.75 Aligned_cols=65 Identities=29% Similarity=0.386 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 116 PIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 116 ~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
...+++...|...|. ++|. |+-++.+.++.. ..++.+.+..+. ...|.+++|+++++||.-++.-
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~-isg~~a~~~f~~------S~L~~~~L~~IW----~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGK-ISGDQAREFFMK------SGLPRDVLAQIW----NLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTE-EEHHHHHHHHHH------TTSSHHHHHHHH----HHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCe-EeHHHHHHHHHH------cCCCHHHHHHHH----hhhcCCCCCcCCHHHHHHHHHH
Confidence 456778899999985 6899 999999998753 357777766665 8999999999999999988875
No 90
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=97.27 E-value=0.00092 Score=59.48 Aligned_cols=110 Identities=25% Similarity=0.446 Sum_probs=83.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcccC-cCCC-----------CCCHHHHHHHHhc--cCCcchHHHHHHHHHHcCCC
Q 027386 30 PEILARETVFSVSEIEALYELFKKISSAV-IDDG-----------LINKEEFQLALFK--TNKKESLFADRVFDLFDTKH 95 (224)
Q Consensus 30 ~~~l~~~~~~s~~~i~~l~~~F~~~d~~~-~~~g-----------~i~~~ef~~~l~~--~~~~~~~~~~~lf~~~d~~~ 95 (224)
++.+.+.+.||..++..++.+|..--... .+-| +++..+|...+.. .+.....+..++|...|.++
T Consensus 489 lrs~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~ 568 (671)
T KOG4347|consen 489 LRSVVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSM 568 (671)
T ss_pred HHhhcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCC
Confidence 55566678899999999999998742210 0011 1334444444433 12234556899999999999
Q ss_pred CCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHH
Q 027386 96 NGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEV 142 (224)
Q Consensus 96 ~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~ 142 (224)
+|.++|.+++.++..++. +...++++.+|+++|.+++ . ...++.
T Consensus 569 ~g~Ltf~~lv~gL~~l~~-~~~~ek~~l~y~lh~~p~~-~-~d~e~~ 612 (671)
T KOG4347|consen 569 TGLLTFKDLVSGLSILKA-GDALEKLKLLYKLHDPPAD-E-LDREEV 612 (671)
T ss_pred cceeEHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCcc-c-cccccc
Confidence 999999999999999998 7888999999999999999 8 888888
No 91
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.13 E-value=0.00045 Score=36.80 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=12.9
Q ss_pred HHHHHHhhcccCcCCCCCCHHHHHHHHh
Q 027386 47 LYELFKKISSAVIDDGLINKEEFQLALF 74 (224)
Q Consensus 47 l~~~F~~~d~~~~~~g~i~~~ef~~~l~ 74 (224)
++..|..+|.+ ++|+|+.+||..++.
T Consensus 2 l~~~F~~~D~d--~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKD--GDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TT--SSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCC--CCCcCcHHHHHHHHH
Confidence 34455555555 555555555555443
No 92
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.13 E-value=0.0015 Score=55.71 Aligned_cols=65 Identities=23% Similarity=0.383 Sum_probs=52.5
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhhCCC---CChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHH
Q 027386 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPN---APIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVAT 149 (224)
Q Consensus 84 ~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~---~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~ 149 (224)
++.||+.+|.|++|.|+.+||..++..+.+. .-.+..+...-+.+|.|+||. |+..||-.+++..
T Consensus 549 LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~-IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 549 LETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGK-IDLNEFLEAFRLV 616 (631)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCc-ccHHHHHHHHhhh
Confidence 4778999999999999999999888766542 334566777888999999999 9999998887754
No 93
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.05 E-value=0.0018 Score=38.46 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=32.1
Q ss_pred CCHHHHHHHHhccCCc-chHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Q 027386 64 INKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILGFEEFARALSV 110 (224)
Q Consensus 64 i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~ 110 (224)
++..|++.++...++. ...++..+|+.+|.+++|.+..+||..+...
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 5677777777765555 3456778888888888888888888777654
No 94
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.92 E-value=0.0039 Score=37.06 Aligned_cols=48 Identities=23% Similarity=0.543 Sum_probs=35.0
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 137 IERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 137 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
++..|++.+++.+ +..++++-+..+ |+..|.+++|.+.-+||..+++.
T Consensus 2 msf~Evk~lLk~~----NI~~~~~yA~~L----Fq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMM----NIEMDDEYARQL----FQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHT----T----HHHHHHH----HHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----ccCcCHHHHHHH----HHHhcccCCCCccHHHHHHHHHH
Confidence 6889999997655 888887655554 49999999999999999988764
No 95
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.83 E-value=0.0089 Score=51.42 Aligned_cols=137 Identities=16% Similarity=0.336 Sum_probs=80.3
Q ss_pred HHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCc-c-hH--------------HHHHHHHHHcCCCCCcccHHHHHHHHh
Q 027386 46 ALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-E-SL--------------FADRVFDLFDTKHNGILGFEEFARALS 109 (224)
Q Consensus 46 ~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~-~~--------------~~~~lf~~~d~~~~g~I~f~Ef~~~~~ 109 (224)
.+...+..++.. +.|++...+|...+...... . .. -+.++|-.++....|.|+.++....-.
T Consensus 175 ~~~~~v~~l~~~--~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snl 252 (493)
T KOG2562|consen 175 RLEQFVNLLIQA--GCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNL 252 (493)
T ss_pred HHHHHHHHHhcc--CccceeccccHHHHHHHHhcCCchhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHH
Confidence 344456666666 78888888888777552211 1 11 157788888888899999988765332
Q ss_pred h-----hCCCCCh--------HHH---HHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 027386 110 V-----FHPNAPI--------DDK---IEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEA 173 (224)
Q Consensus 110 ~-----~~~~~~~--------~~~---l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~ 173 (224)
. ....... -+. +-.-|-.+|.|++|. |+.+++...-.. .++.--+++++.++-...
T Consensus 253 l~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~l-idk~~L~ry~d~-------tlt~~ivdRIFs~v~r~~ 324 (493)
T KOG2562|consen 253 LDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGL-IDKEDLKRYGDH-------TLTERIVDRIFSQVPRGF 324 (493)
T ss_pred HHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccc-cCHHHHHHHhcc-------chhhHHHHHHHhhccccc
Confidence 1 1110000 011 222366779999999 999999887422 233333344442111123
Q ss_pred CCCCCCcccHHHHHHHHHh
Q 027386 174 DTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 174 d~~~dg~It~~eF~~~~~~ 192 (224)
-...+|+++|++|+.++.-
T Consensus 325 ~~~~eGrmdykdFv~FilA 343 (493)
T KOG2562|consen 325 TVKVEGRMDYKDFVDFILA 343 (493)
T ss_pred eeeecCcccHHHHHHHHHH
Confidence 3456777888888777643
No 96
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.62 E-value=0.021 Score=38.48 Aligned_cols=79 Identities=18% Similarity=0.335 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhCh
Q 027386 118 DDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAE---SGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHP 194 (224)
Q Consensus 118 ~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~---~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~~ 194 (224)
.++++.+|+.+ .|++|. ++...|..++..++.- .|+..+---++..++..|+... ....|+-++|+.|+...|
T Consensus 2 ~dKyRylFsli-sd~~g~-~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~eP 77 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGC-MDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSEP 77 (90)
T ss_dssp HHHHHHHHHHH-S-TTS--B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT--
T ss_pred hHHHHHHHHHH-cCCCCC-CcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhCC
Confidence 57899999999 688999 9999999998877542 2322221226777887777763 345699999999999999
Q ss_pred hhHhhh
Q 027386 195 SLLKNM 200 (224)
Q Consensus 195 ~l~~~~ 200 (224)
..+-++
T Consensus 78 q~lVWL 83 (90)
T PF09069_consen 78 QSLVWL 83 (90)
T ss_dssp TTTTHH
T ss_pred CeeeHH
Confidence 766554
No 97
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.48 E-value=0.012 Score=51.46 Aligned_cols=67 Identities=19% Similarity=0.344 Sum_probs=51.9
Q ss_pred HHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 119 DKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 119 ~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
..++..|...| +++|+ ++..|+..++....... -....+++++++ ...+.|.+|.|+|++|++.+..
T Consensus 19 ~~l~~kF~~~d-~~~G~-v~~~~l~~~f~k~~~~~-g~~~~eei~~~l----~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGY-VTVYELPDAFKKAKLPL-GYFVREEIKEIL----GEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHhhc-CCCCe-eehHHhHHHHHHhcccc-cchhHHHHHHHH----hccCCCcCCccCHHHHHHHHHh
Confidence 34778899999 99999 99999999987651111 223455555555 8999999999999999997764
No 98
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.39 E-value=0.022 Score=40.25 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=45.2
Q ss_pred cchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHH
Q 027386 79 KESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQ 144 (224)
Q Consensus 79 ~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~ 144 (224)
.....+.-.|..+|.|+||.++-.|+..+...+. ..+.-++..|+..|.|+||. |+..|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~---~~e~C~~~F~~~CD~n~d~~-Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM---PPEHCARPFFRSCDVNKDGK-ISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS---TTGGGHHHHHHHH-TT-SSS-EEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh---hhHHHHHHHHHHcCCCCCCC-CCHHHHcc
Confidence 3444578899999999999999999888776552 44556888999999999999 99999864
No 99
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.33 E-value=0.0058 Score=30.68 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCCCCCcccHHHHHHHHH
Q 027386 121 IEFSFQLYDLKQQGFFIERQEVKQMVV 147 (224)
Q Consensus 121 l~~~F~~~D~~~~G~~I~~~e~~~~l~ 147 (224)
++.+|+.+|.+++|. |+..+|..++.
T Consensus 2 ~~~~f~~~d~~~~g~-i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGK-IDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCc-EeHHHHHHHHH
Confidence 455677777777777 77777766654
No 100
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.25 E-value=0.029 Score=37.13 Aligned_cols=68 Identities=18% Similarity=0.415 Sum_probs=49.3
Q ss_pred HHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhC
Q 027386 121 IEFSFQLYDLKQQGFFIERQEVKQMVVATLAESG-MNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRH 193 (224)
Q Consensus 121 l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~ 193 (224)
+..+|..|-. +.+. ||.++|..+|..- -+ ...+.+++..++...-........+.+|+++|.+++...
T Consensus 2 i~~if~~ys~-~~~~-mt~~~f~~FL~~e---Q~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEY-MTAEEFRRFLREE---QGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHCT-TSSS-EEHHHHHHHHHHT---SS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHHHhC-CCCc-CCHHHHHHHHHHH---hccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 6788999955 7888 9999999998643 12 246888988888432111212246899999999999863
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.22 E-value=0.0091 Score=29.92 Aligned_cols=25 Identities=40% Similarity=0.600 Sum_probs=21.8
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 168 KTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 168 ~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
.+|..+|.+++|.|++.+|..+++.
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 4558999999999999999998874
No 102
>PLN02952 phosphoinositide phospholipase C
Probab=95.92 E-value=0.11 Score=46.95 Aligned_cols=114 Identities=14% Similarity=0.247 Sum_probs=74.5
Q ss_pred CCCcccHHHHHHHHhhhCC-CCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 027386 95 HNGILGFEEFARALSVFHP-NAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEA 173 (224)
Q Consensus 95 ~~g~I~f~Ef~~~~~~~~~-~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~ 173 (224)
+.|.++|++|..+...+.. .......+..+|..|-.+ .+. ++.++|..+|...-.. ...+.+.+..+++.++...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~-mt~~~l~~FL~~~Q~e--~~~~~~~~~~i~~~~~~~~ 88 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGH-MGADQLRRFLVLHQDE--LDCTLAEAQRIVEEVINRR 88 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCc-cCHHHHHHHHHHhCCC--cCCCHHHHHHHHHHHHhhc
Confidence 4689999999888777652 233567899999999654 467 9999999998764111 2366777777776554433
Q ss_pred CC---CCCCcccHHHHHHHHHhChhhHhhhccccccccccccc
Q 027386 174 DT---KHDGKIDKEEWRSLVLRHPSLLKNMTLQYLKDITTTFP 213 (224)
Q Consensus 174 d~---~~dg~It~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~ 213 (224)
.. ...+.++++.|.+++.. +++-....-....||+.-..
T Consensus 89 ~~~~~~~~~~l~~~~F~~~l~s-~~~~~p~~~~v~qdm~~Pls 130 (599)
T PLN02952 89 HHVTRYTRHGLNLDDFFHFLLY-DDLNGPITPQVHHDMTAPLS 130 (599)
T ss_pred cccccccccCcCHHHHHHHHcC-ccccccccccccccCCCchh
Confidence 21 22345999999999985 33322222233455555433
No 103
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=0.029 Score=48.75 Aligned_cols=75 Identities=16% Similarity=0.245 Sum_probs=64.3
Q ss_pred HhcCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhC
Q 027386 35 RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFH 112 (224)
Q Consensus 35 ~~~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~ 112 (224)
.-+.++.+|.++....|.-+..| -+|+|+-.--+.++.+..++..+ +..||...|.+.||.+++.||++++....
T Consensus 221 ~pw~IT~EQReYYvnQFrtvQpD--p~gfisGsaAknFFtKSklpi~E-LshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 221 TPWQITPEQREYYVNQFRTVQPD--PHGFISGSAAKNFFTKSKLPIEE-LSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred CccccCHHHHHHHHhhhhcccCC--cccccccHHHHhhhhhccCchHH-HHHHHhhcccCccccccHHHHHhhHhhee
Confidence 34578999999999999999999 89999998888888766555544 67899999999999999999999987654
No 104
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.32 E-value=0.055 Score=49.76 Aligned_cols=96 Identities=27% Similarity=0.522 Sum_probs=80.1
Q ss_pred CCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC
Q 027386 96 NGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADT 175 (224)
Q Consensus 96 ~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~ 175 (224)
+| ++++|+. ..+.+.+++++..|.++|. ++|. ++.+++..++.............+...++...+++..|.
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGK-LTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDP 72 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCC-ccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccc
Confidence 56 8999988 3347889999999999998 9999 999999999887765544556677788888888999999
Q ss_pred CCCCcccHHHHHHHHHhChhhHhhh
Q 027386 176 KHDGKIDKEEWRSLVLRHPSLLKNM 200 (224)
Q Consensus 176 ~~dg~It~~eF~~~~~~~~~l~~~~ 200 (224)
+..|.+.++++.-.+...|......
T Consensus 73 ~~~~y~~~~~~~~ll~~~~~~~~~~ 97 (646)
T KOG0039|consen 73 DHKGYITNEDLEILLLQIPTLLFAI 97 (646)
T ss_pred cccceeeecchhHHHHhchHHHHHH
Confidence 9999999999999999888655543
No 105
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.12 Score=36.19 Aligned_cols=67 Identities=16% Similarity=0.282 Sum_probs=44.5
Q ss_pred cCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhcc-----------CCcchH----HHHHHHHHHcCCCCCcccH
Q 027386 37 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKT-----------NKKESL----FADRVFDLFDTKHNGILGF 101 (224)
Q Consensus 37 ~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~-----------~~~~~~----~~~~lf~~~d~~~~g~I~f 101 (224)
..+|+++++. ..|...|-| +||.++--|+..++... ..++.. .++.+++--|.|+||.|+|
T Consensus 61 a~mtpeqlqf--HYF~MHDld--knn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDY 136 (144)
T KOG4065|consen 61 AKMTPEQLQF--HYFSMHDLD--KNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDY 136 (144)
T ss_pred hhCCHHHHhh--hhhhhhccC--cCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeH
Confidence 4578887764 456666666 88999999988887531 111222 2445555567788999999
Q ss_pred HHHHHH
Q 027386 102 EEFARA 107 (224)
Q Consensus 102 ~Ef~~~ 107 (224)
.||+..
T Consensus 137 gEflK~ 142 (144)
T KOG4065|consen 137 GEFLKR 142 (144)
T ss_pred HHHHhh
Confidence 998764
No 106
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.67 E-value=0.32 Score=43.55 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhc-cCCcchHH----HHHHHHHHcCCC--CCcccHHHHHHHHhh
Q 027386 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK-TNKKESLF----ADRVFDLFDTKH--NGILGFEEFARALSV 110 (224)
Q Consensus 38 ~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~-~~~~~~~~----~~~lf~~~d~~~--~g~I~f~Ef~~~~~~ 110 (224)
.+.+.-+..|.++|..-|.| .+|.++-.|+...=.. .+.+..+. ++...+..-.++ ++.++..-|+.....
T Consensus 188 elkp~~v~al~RIFki~D~d--~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l 265 (625)
T KOG1707|consen 188 ELKPRCVKALKRIFKISDSD--NDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL 265 (625)
T ss_pred cccHHHHHHHHHHHhhhccc--cccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence 36778899999999999999 9999999998764322 34443321 333333332322 233555545543322
Q ss_pred hCCCC-----------------------------------------ChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHH
Q 027386 111 FHPNA-----------------------------------------PIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVAT 149 (224)
Q Consensus 111 ~~~~~-----------------------------------------~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~ 149 (224)
+...+ ..-+.+...|..||.|+||. ++..|+..+....
T Consensus 266 fiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~-L~p~El~~LF~~~ 344 (625)
T KOG1707|consen 266 FIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGA-LSPEELKDLFSTA 344 (625)
T ss_pred HHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCC-cCHHHHHHHhhhC
Confidence 21100 01134778899999999999 9999999997654
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 027386 150 LAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVL 191 (224)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~ 191 (224)
++......-.. ...-.+..|.++|+.|+....
T Consensus 345 ---P~~pW~~~~~~-------~~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 345 ---PGSPWTSSPYK-------DSTVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred ---CCCCCCCCccc-------ccceecccceeehhhHHHHHH
Confidence 12111100000 011123678999999977543
No 107
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.43 E-value=0.27 Score=46.19 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=83.7
Q ss_pred HhcCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchH---HH---HHHHHHHcCCCCCcccHHHHHHHH
Q 027386 35 RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESL---FA---DRVFDLFDTKHNGILGFEEFARAL 108 (224)
Q Consensus 35 ~~~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~---~~---~~lf~~~d~~~~g~I~f~Ef~~~~ 108 (224)
.....++..+..|+..|+.++.. ..|.++.++|..++...|..... .+ .++....|.+..|.++|.+|...+
T Consensus 737 ~sk~~sQ~v~~ElrAle~~~~~~--d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl 814 (890)
T KOG0035|consen 737 DSKGTSQYVLDELRALENEQDKI--DGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDL 814 (890)
T ss_pred cccchhHHHHHHHHHHHhHHHHh--hcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHh
Confidence 33457778889999999999998 88999999999999776655432 13 344455566667999999999999
Q ss_pred hhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHH
Q 027386 109 SVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQ 144 (224)
Q Consensus 109 ~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~ 144 (224)
..-....+...++..+|+.+-++.. + +..+|+..
T Consensus 815 ~R~~e~l~~~~r~i~s~~d~~ktk~-~-lL~eEL~~ 848 (890)
T KOG0035|consen 815 EREYEDLDTELRAILAFEDWAKTKA-Y-LLLEELVR 848 (890)
T ss_pred hhhhhhhcHHHHHHHHHHHHHcchh-H-HHHHHHHh
Confidence 8877667778889999999976655 7 99999888
No 108
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=94.39 E-value=0.15 Score=42.25 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=77.0
Q ss_pred HHHHHHHHhhcccCcCCCCCCHHHHHHHHhc-cC-CcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHH
Q 027386 45 EALYELFKKISSAVIDDGLINKEEFQLALFK-TN-KKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIE 122 (224)
Q Consensus 45 ~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~-~~-~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~ 122 (224)
..+...|..+|.+ ++|.++..+-...+.- ++ ......++.-|+.|+...||.+.-.++..++..... -.+-++-
T Consensus 259 d~l~~~f~LFde~--~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~ 334 (412)
T KOG4666|consen 259 DKLAPTFMLFDEG--TTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVP 334 (412)
T ss_pred hhhhhhhheecCC--CCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeecc
Confidence 5678889999998 9999999887776654 22 223455788999999999999999888887766553 3444566
Q ss_pred HHHHHhCCCCCCCcccHHHHHHHH
Q 027386 123 FSFQLYDLKQQGFFIERQEVKQMV 146 (224)
Q Consensus 123 ~~F~~~D~~~~G~~I~~~e~~~~l 146 (224)
..|+..+...+|. |+.++|+++.
T Consensus 335 ~lf~~i~q~d~~k-i~~~~f~~fa 357 (412)
T KOG4666|consen 335 VLFPSIEQKDDPK-IYASNFRKFA 357 (412)
T ss_pred ccchhhhcccCcc-eeHHHHHHHH
Confidence 7899999999999 9999999985
No 109
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=93.25 E-value=0.067 Score=44.23 Aligned_cols=68 Identities=25% Similarity=0.311 Sum_probs=51.9
Q ss_pred HHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChh
Q 027386 120 KIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPS 195 (224)
Q Consensus 120 ~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~~~ 195 (224)
.+..-|..+|+|.++. |...|++.+=+-+++. ....+-.+.+|..-|.|+|..||++||+..+...++
T Consensus 334 vv~w~F~qLdkN~nn~-i~rrEwKpFK~~l~k~-------s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNND-IERREWKPFKRVLLKK-------SKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred eeeeeeeeecccccCc-cchhhcchHHHHHHhh-------ccHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 4666799999999999 9999987764433222 223455666779999999999999999998876543
No 110
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=93.04 E-value=0.86 Score=32.85 Aligned_cols=99 Identities=11% Similarity=0.281 Sum_probs=55.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCcccHHHH-HHHH
Q 027386 30 PEILARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEF-ARAL 108 (224)
Q Consensus 30 ~~~l~~~~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef-~~~~ 108 (224)
+..+.+...+..-++..+.++|....-+...+..++..++..++ ..+|........+..+.... +.
T Consensus 26 LR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L-----------~~iy~~l~~~~p~~~~i~~~~v~-- 92 (127)
T PF09068_consen 26 LRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLL-----------SSIYEFLNKRLPTLHQIPSRPVD-- 92 (127)
T ss_dssp HHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHH-----------HHHHHHHHHHSTTS--HH-------
T ss_pred HHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHH-----------HHHHHHHHHHCCCCCCCCchhHH--
Confidence 34556666677777888888888877653224557777777665 45564444433333332200 00
Q ss_pred hhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHH
Q 027386 109 SVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (224)
Q Consensus 109 ~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~ 148 (224)
...+-.+.+++.+||.+++|. |+.-.++.++..
T Consensus 93 ------~a~~L~ln~Ll~vyD~~rtG~-I~vls~KvaL~~ 125 (127)
T PF09068_consen 93 ------LAVDLLLNWLLNVYDSQRTGK-IRVLSFKVALIT 125 (127)
T ss_dssp ------HHHHHHHHHHHHHH-TT--SE-EEHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhCCCCCCe-eehhHHHHHHHH
Confidence 111223788899999999999 999999887643
No 111
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.76 E-value=0.86 Score=42.01 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHH
Q 027386 81 SLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVAT 149 (224)
Q Consensus 81 ~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~ 149 (224)
..++..+|...|.+.+|.+++.+-..++..+-. .-....++..|+..+..+++. +..+++.++....
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~-~l~~~~~~~~f~e~~~~~~~k-~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNV-QLSESKARRLFKESDNSQTGK-LEEEEFVKFRKEL 201 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHH-hhhHHHHHHHHHHHHhhccce-ehHHHHHHHHHhh
Confidence 345788999999999999999998888776554 455677888898888889999 9999999886554
No 112
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.62 E-value=0.58 Score=35.38 Aligned_cols=37 Identities=5% Similarity=0.075 Sum_probs=30.7
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhChhhHhhhcc
Q 027386 166 IDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTL 202 (224)
Q Consensus 166 ~~~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~~~~ 202 (224)
++.+|.+++..+.+.+|+.|..++++.+.+..+.+++
T Consensus 98 Fe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW 134 (174)
T PF05042_consen 98 FEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGW 134 (174)
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchh
Confidence 4445589998888889999999999999887777766
No 113
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=92.62 E-value=0.45 Score=31.29 Aligned_cols=61 Identities=15% Similarity=0.285 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhhCCC-CChHHHHHHHHHHhCCC----CCCCcccHHHHHHHH
Q 027386 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPN-APIDDKIEFSFQLYDLK----QQGFFIERQEVKQMV 146 (224)
Q Consensus 84 ~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~-~~~~~~l~~~F~~~D~~----~~G~~I~~~e~~~~l 146 (224)
+..+|..+.. +.+.++.++|..++...... ....+.++.++..|.++ ..+. ++.++|..+|
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~-lt~~gF~~fL 67 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQ-LTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTE-EEHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCC-cCHHHHHHHH
Confidence 4556666644 55667777777777655543 12355566666666443 3566 8888887776
No 114
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=92.22 E-value=0.26 Score=41.13 Aligned_cols=58 Identities=19% Similarity=0.122 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 027386 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVV 147 (224)
Q Consensus 84 ~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~ 147 (224)
+..+|..+|.|.|+.++-.|...+-. ...+.-++..|...|...||. |+..|.-..+.
T Consensus 252 ~gWMFnklD~N~Dl~Ld~sEl~~I~l-----dknE~CikpFfnsCD~~kDg~-iS~~EWC~CF~ 309 (434)
T KOG3555|consen 252 LGWMFNKLDTNYDLLLDQSELRAIEL-----DKNEACIKPFFNSCDTYKDGS-ISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhccccccccccCHHHhhhhhc-----cCchhHHHHHHhhhcccccCc-cccchhhhhhc
Confidence 45566666666666666665433321 244555566666666666666 66666555444
No 115
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=92.13 E-value=0.4 Score=39.55 Aligned_cols=70 Identities=21% Similarity=0.344 Sum_probs=49.6
Q ss_pred HHHHHHhCCCCCCCcccHHHHHHHHHHHHHhc-CCCCCHHHH-------HHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 122 EFSFQLYDLKQQGFFIERQEVKQMVVATLAES-GMNLSDDVI-------ETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 122 ~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~-~~~~~~~~~-------~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
+-.|.+.|.|+||. ++-.|+.+++..-+.+. .+.-.+... -.|-..++..+|.|.|..||.+||+..-.+
T Consensus 247 KTFF~LHD~NsDGf-ldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 247 KTFFALHDLNSDGF-LDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred chheeeeccCCccc-ccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 44688999999999 99999999876544442 222222222 222335678999999999999999987654
No 116
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=91.38 E-value=0.36 Score=40.38 Aligned_cols=62 Identities=21% Similarity=0.453 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 118 DDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 118 ~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
...+-.+|..+|.|.||. ++..|++.+. ..-.+ .-++-+|..-|...||.|+-.||...+.+
T Consensus 249 Kds~gWMFnklD~N~Dl~-Ld~sEl~~I~--------ldknE----~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLL-LDQSELRAIE--------LDKNE----ACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhccccccccc-cCHHHhhhhh--------ccCch----hHHHHHHhhhcccccCccccchhhhhhcc
Confidence 456889999999999999 9999999873 22233 33555558999999999999999988866
No 117
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.31 E-value=0.29 Score=45.08 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Q 027386 40 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSV 110 (224)
Q Consensus 40 s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~ 110 (224)
........+..|+.+|+. .+|+++-.+-+.+|...+++... +..||..-|.|+||+++-+||+.++..
T Consensus 190 p~~~klKY~QlFNa~Dkt--rsG~Lsg~qaR~aL~qS~Lpq~~-LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 190 PQHNKLKYRQLFNALDKT--RSGYLSGQQARSALGQSGLPQNQ-LAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred cchhhhHHHHHhhhcccc--cccccccHHHHHHHHhcCCchhh-HhhheeeeccCCCCcccHHHHHHHHHH
Confidence 334455667889999998 99999999999888776666655 567999999999999999999987753
No 118
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=91.27 E-value=0.16 Score=32.36 Aligned_cols=60 Identities=12% Similarity=0.246 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCC---CCCcccHHHHHH
Q 027386 116 PIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTK---HDGKIDKEEWRS 188 (224)
Q Consensus 116 ~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~---~dg~It~~eF~~ 188 (224)
...+.+..+|+.+ .++.++ ||.+||++.+ ++++++-++..+-...+++ ..|.++|..|..
T Consensus 3 ~s~eqv~~aFr~l-A~~Kpy-VT~~dLr~~l-----------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPY-VTEEDLRRSL-----------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSC-EEHHHHHHHS------------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CCHHHHHHHHHHH-HcCCCc-ccHHHHHHHc-----------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 3456789999999 788899 9999999973 3334444442111112211 125688888864
No 119
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=90.11 E-value=0.21 Score=41.40 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=54.1
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHH
Q 027386 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (224)
Q Consensus 84 ~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~ 148 (224)
+...|..+|.|.++-|+-.||..+-..+........-.+.+|+-.|.|+|.. |+.+|++..+..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKk-ISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKK-ISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCce-ecHHHHhhhhcc
Confidence 4457888999999999999998888777765667777888999999999999 999999998754
No 120
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=89.01 E-value=0.82 Score=45.03 Aligned_cols=59 Identities=15% Similarity=0.348 Sum_probs=48.5
Q ss_pred HHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 124 SFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 124 ~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
.|+-||+||.|. |+..+|..++.. ..+.+..+++-++ .-...|.+...+|++|+.-+..
T Consensus 4062 tfkeydpdgkgi-iskkdf~kame~-----~k~ytqse~dfll----scae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGI-ISKKDFHKAMEG-----HKHYTQSEIDFLL----SCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCcc-ccHHHHHHHHhc-----cccchhHHHHHHH----HhhccCccccccHHHHHHHhcC
Confidence 488899999999 999999999753 3567777777777 6777888889999999987754
No 121
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=88.91 E-value=21 Score=34.11 Aligned_cols=137 Identities=14% Similarity=0.235 Sum_probs=89.2
Q ss_pred HHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHHcC--CC-----CCcccHHHHHHHHhhhCCCCCh
Q 027386 45 EALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDT--KH-----NGILGFEEFARALSVFHPNAPI 117 (224)
Q Consensus 45 ~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~--~~-----~g~I~f~Ef~~~~~~~~~~~~~ 117 (224)
..+.+..-.+..+.+..|+|-...+...+.+.... ..++.....+.. +. ....+++.|..++..+|.
T Consensus 146 ~fl~K~~tklkmqvn~~grip~knI~k~F~~~k~~--KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcp---- 219 (1189)
T KOG1265|consen 146 TFLFKAHTKLKMQVNFEGRIPVKNIIKTFSADKKE--KRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCP---- 219 (1189)
T ss_pred HHHHHHHHhhhhcccccccccHHHHHHHhhcCCch--hHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCC----
Confidence 34445554444433367888888877776433211 223333333221 11 124677888888888775
Q ss_pred HHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHhCCC----CCCcccHHHHH
Q 027386 118 DDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAES------GMNLSDDVIETIIDKTFEEADTK----HDGKIDKEEWR 187 (224)
Q Consensus 118 ~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~------~~~~~~~~~~~~~~~~f~~~d~~----~dg~It~~eF~ 187 (224)
...+..+|..+..+..-+ +|.++|..+++.--+.+ -+...+..+..++ +.+..| ..|+++-+.|+
T Consensus 220 R~eie~iF~ki~~~~kpy-lT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~li----ekyEp~~~~a~~gqms~dgf~ 294 (1189)
T KOG1265|consen 220 RPEIEEIFRKISGKKKPY-LTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLI----EKYEPNSDNAEKGQMSTDGFV 294 (1189)
T ss_pred chhHHHHHHHhccCCCcc-ccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHH----HHcCCchhhhhccccchhhhH
Confidence 455889999998888888 99999999987532221 1345666777777 677665 46899999999
Q ss_pred HHHHh
Q 027386 188 SLVLR 192 (224)
Q Consensus 188 ~~~~~ 192 (224)
+++..
T Consensus 295 ryl~g 299 (1189)
T KOG1265|consen 295 RYLMG 299 (1189)
T ss_pred HHhhC
Confidence 99987
No 122
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.81 E-value=0.57 Score=44.54 Aligned_cols=139 Identities=22% Similarity=0.372 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCC--C--
Q 027386 39 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHP--N-- 114 (224)
Q Consensus 39 ~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~--~-- 114 (224)
++..+....-.+|..+.+ .+|.++....+.++.....+... ..++|...|.+.+|.+++.||..++..... .
T Consensus 123 ~~~qe~aky~q~f~s~~p---~~g~~sg~~~~pil~~s~Lp~~~-l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~ 198 (847)
T KOG0998|consen 123 ITPQEQAKYDQIFRSLSP---SNGLLSGDKAKPILLNSKLPSDV-LGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGN 198 (847)
T ss_pred CCHHHHHHHHHHHhccCC---CCCccccchhhhhhhcCCCChhh-hccccccccccccCCCChhhhhhhhhHHHHHhhcc
Confidence 678888888888999988 58999999988888665555444 567999999999999999999987642110 0
Q ss_pred --------------------------------------------------------------------------------
Q 027386 115 -------------------------------------------------------------------------------- 114 (224)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (224)
T Consensus 199 ~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vs 278 (847)
T KOG0998|consen 199 SEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVS 278 (847)
T ss_pred cCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccC
Confidence
Q ss_pred CChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 115 APIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 115 ~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
......+..+|...|.+.+|. |+..+....+.. ..++...+.... ...|+...|.|++++|.-.+..
T Consensus 279 p~d~~~~~~if~q~d~~~dG~-I~s~~~~~~f~~------~gl~~~~l~~~w----~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 279 PSDKQKYSKIFSQVDKDNDGS-ISSNEARNIFLP------FGLSKPRLAHVW----LLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred hHHHHHHHHHHHhccccCCCc-cccccccccccc------CCCChhhhhhhh----hhcchhccCcccccccchhhhh
Confidence 011234566788889999999 999888887532 345555555555 7888888999999987665543
No 123
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=88.31 E-value=1.2 Score=39.80 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=64.5
Q ss_pred cCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCc-chHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCC
Q 027386 37 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILGFEEFARALSVFHP 113 (224)
Q Consensus 37 ~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~ 113 (224)
..++++++...+..|..+|.+ +.|++..++..+.+...+.. +....+++.+..|.+-.|.+...||...++....
T Consensus 585 i~~~~~~~~~~~~rf~~lD~~--k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 585 IKLTPEDFLRRKTRFAFLDAD--KKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred cccCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 458999999999999999999 89999999999999875533 3445788899999988999999999999988765
No 124
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=87.98 E-value=15 Score=34.40 Aligned_cols=150 Identities=11% Similarity=0.197 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhc--------c----CCcc--hHHHHHHHHHHcCCCCCcccHHH
Q 027386 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK--------T----NKKE--SLFADRVFDLFDTKHNGILGFEE 103 (224)
Q Consensus 38 ~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~--------~----~~~~--~~~~~~lf~~~d~~~~g~I~f~E 103 (224)
.+..-.+.-..++|++.+... +...++..+....+.. . ..+. +.-+.-++++||...+|.|...+
T Consensus 413 ~ldlv~ltl~l~if~~h~l~~-~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls 491 (966)
T KOG4286|consen 413 CLDLLSLSLALDALDQHNLKQ-NDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLS 491 (966)
T ss_pred HhccccHHHHHHHHHHhcccc-cCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEee
Confidence 344445556677777776651 2345666665554422 1 1111 22245688999999999999999
Q ss_pred HHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHH---h-------cCCCCCHHHHHHHHHHHHHHh
Q 027386 104 FARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLA---E-------SGMNLSDDVIETIIDKTFEEA 173 (224)
Q Consensus 104 f~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~---~-------~~~~~~~~~~~~~~~~~f~~~ 173 (224)
|...+..+++ ...+++++.+|+.....+... + ...|..++-.+.. . .|.++. --+++.|..
T Consensus 492 ~ki~~i~lck-~~leek~~ylF~~vA~~~sq~-~-q~~l~lLL~dliqipr~lGE~aAfGgsNve-----psvrsCF~~- 562 (966)
T KOG4286|consen 492 FKIGIISLCK-AHLEDKYRYLFKQVASSTSQC-D-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIE-----PSVRSCFQF- 562 (966)
T ss_pred ehhhHHHHhc-chhHHHHHHHHHHHcCchhhH-H-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCC-----hHHHHHHHh-
Confidence 9999999997 788899999999997665554 3 5555544433211 1 122333 235555552
Q ss_pred CCCCCCcccHHHHHHHHHhChhhHh
Q 027386 174 DTKHDGKIDKEEWRSLVLRHPSLLK 198 (224)
Q Consensus 174 d~~~dg~It~~eF~~~~~~~~~l~~ 198 (224)
.++--.|++..|..|+...|-.+-
T Consensus 563 -v~~~pei~~~~f~dw~~~epqsmV 586 (966)
T KOG4286|consen 563 -VNNKPEIEAALFLDWMRLEPQSMV 586 (966)
T ss_pred -cCCCCcchHHHHHHHhccCcchhh
Confidence 244456999999999988875443
No 125
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=87.10 E-value=2.4 Score=31.58 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=43.5
Q ss_pred HHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCc----chHHHHHHHHHHcCCCCCcccHHHHHHHHhhhC
Q 027386 46 ALYELFKKISSAVIDDGLINKEEFQLALFKTNKK----ESLFADRVFDLFDTKHNGILGFEEFARALSVFH 112 (224)
Q Consensus 46 ~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~----~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~ 112 (224)
.+...|..+-.. +...|+-..|..++...++- ....++-+|..+-..+...|+|++|..++..+.
T Consensus 3 ~~F~~f~~fG~~--~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 3 AVFKAFASFGKK--NGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHCSSTS--TSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--ccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 344444444443 56789999999998764432 234578889887666667799999999887654
No 126
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=85.24 E-value=2.4 Score=38.52 Aligned_cols=78 Identities=18% Similarity=0.200 Sum_probs=52.5
Q ss_pred ccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCC
Q 027386 99 LGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHD 178 (224)
Q Consensus 99 I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~d 178 (224)
|+|..|...+..+.+-.....-+..+|+.+|.+++|. +++.++...+..+... +.-+-++.+|+.+|++++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~-Ltf~~lv~gL~~l~~~--------~~~ek~~l~y~lh~~p~~ 605 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGL-LTFKDLVSGLSILKAG--------DALEKLKLLYKLHDPPAD 605 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcce-eEHHHHHHHHHHHHhh--------hHHHHHHHHHhhccCCcc
Confidence 4444454444444332334456888999999999999 9999999988765221 122345567788888888
Q ss_pred CcccHHHH
Q 027386 179 GKIDKEEW 186 (224)
Q Consensus 179 g~It~~eF 186 (224)
..+.++-
T Consensus 606 -~~d~e~~ 612 (671)
T KOG4347|consen 606 -ELDREEV 612 (671)
T ss_pred -ccccccc
Confidence 7766664
No 127
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=85.03 E-value=0.43 Score=36.81 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=21.1
Q ss_pred CCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHH
Q 027386 96 NGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQ 144 (224)
Q Consensus 96 ~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~ 144 (224)
||.++-.|++..-+.+.+ -+.-+...|...|.|+||+ |+.+|+..
T Consensus 202 d~~~sh~el~pl~ap~ip---me~c~~~f~e~cd~~nd~~-ial~ew~~ 246 (259)
T KOG4004|consen 202 DGYLSHTELAPLRAPLIP---MEHCTTRFFETCDLDNDKY-IALDEWAG 246 (259)
T ss_pred cccccccccccccCCccc---HHhhchhhhhcccCCCCCc-eeHHHhhc
Confidence 455555554444333322 1223444555555555555 55555443
No 128
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=83.13 E-value=2.8 Score=37.64 Aligned_cols=65 Identities=15% Similarity=0.309 Sum_probs=54.3
Q ss_pred HHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 119 DKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 119 ~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
...+.-|..+|.++.|+ ++.++...+++.. +...+++...+.+ ++.+.+.+|++...||.+.+..
T Consensus 593 ~~~~~rf~~lD~~k~~~-~~i~~v~~vlk~~----~~~~d~~~~~~~l----~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAY-QAIADVLKVLKSE----NVGWDEDRLHEEL----QEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHHhhcchHHHH-HHHHHHHHHHHHh----cCCCCHHHHHHHH----HHHHHhhcceeeHHHHHHHHHH
Confidence 34566799999999999 9999999997664 6778888888888 7888888999999999887754
No 129
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=82.63 E-value=5 Score=29.87 Aligned_cols=65 Identities=14% Similarity=0.207 Sum_probs=40.8
Q ss_pred HHHHHHh---CCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 122 EFSFQLY---DLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 122 ~~~F~~~---D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
+.+|..| =..+... ++-..|..+|+.+ .-.+..++...++-++ ..+-..+...|+|++|+.++..
T Consensus 2 ~~~F~~f~~fG~~~~~~-m~~~~F~Kl~kD~-~i~d~k~t~tdvDiiF----~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTE-MDSKNFAKLCKDC-GIIDKKLTSTDVDIIF----SKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSE-EEHHHHHHHHHHT-SS--SSS-HHHHHHHH----HHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccc-ccHHHHHHHHHHc-CCCCCCCchHHHHHHH----HHhhcCCCcccCHHHHHHHHHH
Confidence 3445544 3334445 9999999998764 2223457777766666 6665555667999999998865
No 130
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=82.43 E-value=8.2 Score=32.47 Aligned_cols=102 Identities=16% Similarity=0.243 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcC-----CCCC
Q 027386 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESG-----MNLS 158 (224)
Q Consensus 84 ~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~-----~~~~ 158 (224)
...++.++|..+.|+++--.-..++...+. +...++++.+|.... |.+|. +..-.+-+++..+++-+- +...
T Consensus 112 laflLaA~ds~~~g~~~vfavkialatlc~-gk~~dklryIfs~is-ds~gi-m~~i~~~~fl~evlslpT~v~e~psfg 188 (434)
T KOG4301|consen 112 LAFLLAAEDSEGQGKQQVFAVKIALATLCG-GKIKDKLRYIFSLIS-DSRGI-MQEIQRDQFLHEVLSLPTAVFEGPSFG 188 (434)
T ss_pred HHHHHhhcCccCCCCceeecchhhhhhhcc-chHHHHHHHHHHHHc-cchHH-HHHHHHHHHHHHHHcCCchhhcCCCcc
Confidence 345677889999999888777778888886 788899999999996 55777 777777777666544321 1111
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChh
Q 027386 159 DDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPS 195 (224)
Q Consensus 159 ~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~~~ 195 (224)
. -+..++..| -++.+++++.|+..+...|.
T Consensus 189 ~--te~~a~~cf-----~qqrKv~Ln~fldtl~sdp~ 218 (434)
T KOG4301|consen 189 Y--TELSARLCF-----LQQRKVELNQFLDTLMSDPP 218 (434)
T ss_pred h--HHHHHHHHH-----HHHHHHHHHHHHHHHhcCCC
Confidence 1 123333222 23456899999998887653
No 131
>PLN02230 phosphoinositide phospholipase C 4
Probab=81.40 E-value=9 Score=35.05 Aligned_cols=94 Identities=9% Similarity=0.144 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCCCcccHHHHHHHHHhC
Q 027386 117 IDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEAD---TKHDGKIDKEEWRSLVLRH 193 (224)
Q Consensus 117 ~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d---~~~dg~It~~eF~~~~~~~ 193 (224)
+...++.+|..|-.++ +. ++.++|..+|...- +.....+.+.+..++..+..... .-+.+.++.+.|.+++..
T Consensus 27 p~~ei~~lf~~~s~~~-~~-mt~~~l~~FL~~~Q-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s- 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AH-MSPEQLQKLMAEEG-GGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS- 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-Cc-cCHHHHHHHHHHhC-CCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC-
Confidence 4567999999996444 78 99999999987541 00113466777777765443332 123456999999999976
Q ss_pred hhhHhhhcccccccccccccc
Q 027386 194 PSLLKNMTLQYLKDITTTFPS 214 (224)
Q Consensus 194 ~~l~~~~~~~~~~~~~~~~~~ 214 (224)
+++-....-....||+.-...
T Consensus 103 ~~~~~~~~~~v~qDM~~PLsh 123 (598)
T PLN02230 103 TDLNPPIADQVHQNMDAPLSH 123 (598)
T ss_pred cccCCcccccccccCCCchhh
Confidence 332222222335566654433
No 132
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=79.89 E-value=3.7 Score=34.08 Aligned_cols=91 Identities=19% Similarity=0.298 Sum_probs=58.8
Q ss_pred HHHHhhcccCcCCCCCCHHHHHHHHhc-------cCCcchHH----------HHHHHHHHcCCCCCcccHHHHHHHHhhh
Q 027386 49 ELFKKISSAVIDDGLINKEEFQLALFK-------TNKKESLF----------ADRVFDLFDTKHNGILGFEEFARALSVF 111 (224)
Q Consensus 49 ~~F~~~d~~~~~~g~i~~~ef~~~l~~-------~~~~~~~~----------~~~lf~~~d~~~~g~I~f~Ef~~~~~~~ 111 (224)
..|...|.| ++|+++..++..++.. .....+.. -+.++...|.|.|..|+.+||+......
T Consensus 248 TFF~LHD~N--sDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 248 TFFALHDLN--SDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred hheeeeccC--CcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 345666677 9999999999877653 11111111 3447888999999999999999987654
Q ss_pred CCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHH
Q 027386 112 HPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVAT 149 (224)
Q Consensus 112 ~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~ 149 (224)
.. ..+.+.|. .+ +.... .|-+|++++=+.+
T Consensus 326 ef-~~p~e~WE----tl--~q~~~-yTeEEL~~fE~e~ 355 (442)
T KOG3866|consen 326 EF-NPPKEEWE----TL--GQKKV-YTEEELQQFEREY 355 (442)
T ss_pred cc-CCcchhhh----hh--ccccc-ccHHHHHHHHHHH
Confidence 44 23323333 22 33345 7788887765443
No 133
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=79.79 E-value=3.3 Score=37.39 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=60.2
Q ss_pred cCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhcc-CCcchHHHHHHHH-HHcCCCCCcccHHHHHHHHhhhCCC
Q 027386 37 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKT-NKKESLFADRVFD-LFDTKHNGILGFEEFARALSVFHPN 114 (224)
Q Consensus 37 ~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~lf~-~~d~~~~g~I~f~Ef~~~~~~~~~~ 114 (224)
+.++..-+..+...|.++|.| +||.++-+|+..++... +.++. +..+. .--.+..|.+++.-|+.-++....-
T Consensus 307 ~ELs~~~~~Fl~~~f~~~D~d--~Dg~L~p~El~~LF~~~P~~pW~---~~~~~~~t~~~~~G~ltl~g~l~~WsL~Tll 381 (625)
T KOG1707|consen 307 VELSPKGYRFLVDVFEKFDRD--NDGALSPEELKDLFSTAPGSPWT---SSPYKDSTVKNERGWLTLNGFLSQWSLMTLL 381 (625)
T ss_pred eeccHHHHHHHHHHHHhccCC--CCCCcCHHHHHHHhhhCCCCCCC---CCcccccceecccceeehhhHHHHHHHHhhc
Confidence 457889999999999999999 99999999999888652 22321 00010 0112367999999999988776652
Q ss_pred CChHHHHHHHHHHhCCC
Q 027386 115 APIDDKIEFSFQLYDLK 131 (224)
Q Consensus 115 ~~~~~~l~~~F~~~D~~ 131 (224)
.-....-..+|--|..+
T Consensus 382 d~~~t~~~L~Ylgf~~~ 398 (625)
T KOG1707|consen 382 DPRRTLEYLAYLGFPTD 398 (625)
T ss_pred cHHHHHHHHHhcCCccc
Confidence 22223334455555554
No 134
>PLN02223 phosphoinositide phospholipase C
Probab=76.58 E-value=17 Score=32.86 Aligned_cols=97 Identities=9% Similarity=-0.017 Sum_probs=63.1
Q ss_pred ChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhCC----CCCCcccHHHHHHHH
Q 027386 116 PIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESG-MNLSDDVIETIIDKTFEEADT----KHDGKIDKEEWRSLV 190 (224)
Q Consensus 116 ~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~~~f~~~d~----~~dg~It~~eF~~~~ 190 (224)
...+.++.+|..|- ++.|. ++.+.+.+++.-+...-| ...+.+.++.+++.++..... .+.+.++.+.|.+++
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~-m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDD-DMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCC-CCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 34567999999994 67788 999999998844323333 356788888999877655431 233669999999999
Q ss_pred HhChhhHhhhcccc-ccccccccccc
Q 027386 191 LRHPSLLKNMTLQY-LKDITTTFPSF 215 (224)
Q Consensus 191 ~~~~~l~~~~~~~~-~~~~~~~~~~~ 215 (224)
.. +++-....... ..||+.-...|
T Consensus 91 ~s-~~~n~~~~~~v~~~DM~~PLshY 115 (537)
T PLN02223 91 FS-TELNPPIGDQVRHHDMHAPLSHY 115 (537)
T ss_pred cC-cccCCccccccCcccCCCchhhh
Confidence 86 22211222222 45666554443
No 135
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=75.48 E-value=9.2 Score=36.42 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=54.0
Q ss_pred HHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChh
Q 027386 119 DKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSD-DVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPS 195 (224)
Q Consensus 119 ~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~-~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~~~ 195 (224)
..++..|+-+|....|- ++.+++.+.+..+ |....+ ++...-+..+....|.+.-|++++.+|...+.+.-+
T Consensus 747 ~ElrAle~~~~~~d~~a-a~~e~~~~~Lmsl----g~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGA-ASPEELLRCLMSL----GYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHHHHHHhHHHHhhccc-CCHHHHHHHHHhc----CcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 45888999999999999 9999999997665 766554 333333334446777777799999999998877443
No 136
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.45 E-value=8.6 Score=34.07 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 027386 120 KIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVL 191 (224)
Q Consensus 120 ~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~ 191 (224)
-+..-|+..-.|-.|. |+-.--++++. ...++-+++..+. +.-|.++||.+|+.||..++.
T Consensus 232 YYvnQFrtvQpDp~gf-isGsaAknFFt------KSklpi~ELshIW----eLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 232 YYVNQFRTVQPDPHGF-ISGSAAKNFFT------KSKLPIEELSHIW----ELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHhhhhcccCCcccc-cccHHHHhhhh------hccCchHHHHHHH----hhcccCccccccHHHHHhhHh
Confidence 3555688888888999 99888888764 2357767766666 889999999999999998874
No 137
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=73.86 E-value=17 Score=31.00 Aligned_cols=102 Identities=20% Similarity=0.297 Sum_probs=65.6
Q ss_pred CCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcC--CCCCHHH-HHHHHHH----
Q 027386 96 NGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESG--MNLSDDV-IETIIDK---- 168 (224)
Q Consensus 96 ~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~--~~~~~~~-~~~~~~~---- 168 (224)
+..++++.++...+.... +..++..+.++...|.+++|. ....++.+.+..++...- .....++ .......
T Consensus 72 ~~~~~l~k~~~~~~~~~~-gt~dq~a~mL~~~~~~sgn~~-~~~~q~eQ~~~~vlks~~~~ess~~es~~~~~~d~af~~ 149 (427)
T KOG2557|consen 72 DDKMTLEKLVIAKATYEK-GTDDQIAEMLYQTLDVNGNGV-LSRSQLEQFLVVVLKSVFSTESSDAESSDYKKMDDAFLN 149 (427)
T ss_pred CccchHHHHhhHHhhhcc-CcccHHHHHHHHHHhhccccc-cchhHHHHHHHHHhhheeeecccchhhhhhhhhhccccc
Confidence 346889998888777776 788899999999999999999 999999998877654321 1111111 1111111
Q ss_pred --HHHHhCCCCCCcccHHHHHHHHHhChhhHhh
Q 027386 169 --TFEEADTKHDGKIDKEEWRSLVLRHPSLLKN 199 (224)
Q Consensus 169 --~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~ 199 (224)
.|.+-+.+--+--.++.|+.++...|-+-+.
T Consensus 150 ~~~~~ke~e~t~p~~~le~~~s~~p~f~~i~r~ 182 (427)
T KOG2557|consen 150 AATFSKEDEGTEPGMSLEDFRSWCPFFPTIRKF 182 (427)
T ss_pred hhhhccccccCCCchhHHHHhhhchHHHHHHHH
Confidence 1111222333345788888888777765553
No 138
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=71.75 E-value=15 Score=27.86 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCCh------HHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Q 027386 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPI------DDKIEFSFQLYDLKQQGFFIERQEVKQMVV 147 (224)
Q Consensus 84 ~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~------~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~ 147 (224)
.++||..++..+.+.+++.|...++.......++ .-.+..+|.+. .+.+|. +.+++++.++.
T Consensus 98 Fe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~-l~Ke~iR~vYD 165 (174)
T PF05042_consen 98 FEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGF-LSKEDIRGVYD 165 (174)
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCc-EeHHHHhhhcc
Confidence 4778888888777889999998888775542222 22355555555 567899 99999999875
No 139
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=71.00 E-value=8.1 Score=26.41 Aligned_cols=62 Identities=19% Similarity=0.377 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCc-chHHHHHHHHHHcCC---CCCcccHHHHHHHHhhh
Q 027386 43 EIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTK---HNGILGFEEFARALSVF 111 (224)
Q Consensus 43 ~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~---~~g~I~f~Ef~~~~~~~ 111 (224)
....+...|+++. .+|++..+.|..++ |.. ..+++.+||.++-.. ....|+-+|+..++..+
T Consensus 28 ~W~~VE~RFd~La----~dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 28 GWKEVEKRFDKLA----KDGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp -HHHHHHHHHHH-----BTTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC----cCCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 3677788888887 46899999999888 444 567788888877542 12456666666665443
No 140
>PLN02952 phosphoinositide phospholipase C
Probab=69.43 E-value=58 Score=30.01 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=56.8
Q ss_pred CCCCCCHHHHHHHHhcc---CCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCC-ChHHHHHHHHHHh-------
Q 027386 60 DDGLINKEEFQLALFKT---NKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNA-PIDDKIEFSFQLY------- 128 (224)
Q Consensus 60 ~~g~i~~~ef~~~l~~~---~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~-~~~~~l~~~F~~~------- 128 (224)
++|.++.++|..+.... .......+..+|..+-.++ +.++.++|..++....... ...+.+..++..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 46889999998765443 2334566889999986544 6799999999998876532 2233444444332
Q ss_pred CCCCCCCcccHHHHHHHHH
Q 027386 129 DLKQQGFFIERQEVKQMVV 147 (224)
Q Consensus 129 D~~~~G~~I~~~e~~~~l~ 147 (224)
...+.+. ++.+.|..++.
T Consensus 92 ~~~~~~~-l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHG-LNLDDFFHFLL 109 (599)
T ss_pred ccccccC-cCHHHHHHHHc
Confidence 1123456 89999998874
No 141
>PLN02228 Phosphoinositide phospholipase C
Probab=68.28 E-value=32 Score=31.38 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhCCC----CCCcccHHHHHHHH
Q 027386 116 PIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGM-NLSDDVIETIIDKTFEEADTK----HDGKIDKEEWRSLV 190 (224)
Q Consensus 116 ~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~-~~~~~~~~~~~~~~f~~~d~~----~dg~It~~eF~~~~ 190 (224)
.+.+.+..+|..+-. ++. ++.++|..++... -+. ..+.+.+..++ ..+... ..|.++.+.|.+++
T Consensus 21 ~~~~ei~~if~~~s~--~~~-~t~~~~~~FL~~~---Q~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 21 EPPVSIKRLFEAYSR--NGK-MSFDELLRFVSEV---QGERHAGLDYVQDIF----HSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred CCcHHHHHHHHHhcC--CCc-cCHHHHHHHHHHh---cCCccCCHHHHHHHH----HHhccchhhcccCccCHHHHHHHh
Confidence 356779999999864 368 9999999998664 122 24455666666 454432 34679999999999
Q ss_pred Hh
Q 027386 191 LR 192 (224)
Q Consensus 191 ~~ 192 (224)
..
T Consensus 91 ~s 92 (567)
T PLN02228 91 FS 92 (567)
T ss_pred cC
Confidence 76
No 142
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=68.02 E-value=11 Score=37.87 Aligned_cols=56 Identities=20% Similarity=0.395 Sum_probs=42.3
Q ss_pred HHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 027386 51 FKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARAL 108 (224)
Q Consensus 51 F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~ 108 (224)
|..+|+| +.|.|+..+|.+++....--....++-+..-...+.+...+|++|+.-+
T Consensus 4063 fkeydpd--gkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4063 FKEYDPD--GKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred chhcCCC--CCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 4556788 9999999999999866443344446667766777778899999998755
No 143
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=67.56 E-value=43 Score=24.03 Aligned_cols=72 Identities=11% Similarity=0.254 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCCC--CCCcccHHHHHHHHHHHHHh-----cCCC-CC----HHHHHHHHHHHHHHhCCCCCCcccHHHH
Q 027386 119 DKIEFSFQLYDLKQ--QGFFIERQEVKQMVVATLAE-----SGMN-LS----DDVIETIIDKTFEEADTKHDGKIDKEEW 186 (224)
Q Consensus 119 ~~l~~~F~~~D~~~--~G~~I~~~e~~~~l~~~~~~-----~~~~-~~----~~~~~~~~~~~f~~~d~~~dg~It~~eF 186 (224)
..+..+|+....+. +.. ++..++..++..+... +... .+ +..++-+++.++..+|+++.|.|+.-.|
T Consensus 41 ~~v~~~f~~~~l~~~~d~~-l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~ 119 (127)
T PF09068_consen 41 SNVIEAFREHGLNQSNDSS-LSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSF 119 (127)
T ss_dssp HHHHHHHHHTT---T-TSE-EEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHH
T ss_pred HHHHHHHHHcCCCcccCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHH
Confidence 34566777765554 467 9999999998887632 2212 12 3677788888999999999999999888
Q ss_pred HHHHH
Q 027386 187 RSLVL 191 (224)
Q Consensus 187 ~~~~~ 191 (224)
.-.+.
T Consensus 120 KvaL~ 124 (127)
T PF09068_consen 120 KVALI 124 (127)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 144
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=67.42 E-value=34 Score=25.30 Aligned_cols=87 Identities=18% Similarity=0.309 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHH
Q 027386 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIE 163 (224)
Q Consensus 84 ~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~ 163 (224)
++.+...-+.+.+|.|++..|...+...+. ..+-.-|- .+.+. ++.++++.++
T Consensus 85 Lehllg~~~~~~n~~i~~~~ff~~lQ~~lG-----dWIT~~~L----kh~n~-MSk~Qik~L~----------------- 137 (175)
T PF04876_consen 85 LEHLLGGEDDSTNGLIDIGKFFDILQPKLG-----DWITKNFL----KHPNR-MSKDQIKTLC----------------- 137 (175)
T ss_pred HHHHhcCCcCCcccceeHHHHHHHHHHHhh-----hHHHHHHH----hccch-hhHHHHHHHH-----------------
Confidence 455555555555677888888888865443 11111111 22344 5555555554
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhHhhhccc
Q 027386 164 TIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQ 203 (224)
Q Consensus 164 ~~~~~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~~~~~ 203 (224)
.++.+.+-.++ ++-++|.....+.|....++-++
T Consensus 138 ---~~Ii~~akae~---~dtE~Ye~vwkKmPaY~~nil~~ 171 (175)
T PF04876_consen 138 ---EQIIEMAKAES---SDTEHYEKVWKKMPAYFSNILQP 171 (175)
T ss_pred ---HHHHHHHhccC---CchHHHHHHHHHhhHHHHHHHHH
Confidence 44334443332 35577888888878776665443
No 145
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.68 E-value=4.1 Score=38.97 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhC
Q 027386 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFH 112 (224)
Q Consensus 38 ~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~ 112 (224)
..+..+...+..+|...|.+ .+|.|+..+....+...++.... +..+|...|..+.|.+++.+|...+....
T Consensus 276 ~vsp~d~~~~~~if~q~d~~--~dG~I~s~~~~~~f~~~gl~~~~-l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKD--NDGSISSNEARNIFLPFGLSKPR-LAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred ccChHHHHHHHHHHHhcccc--CCCcccccccccccccCCCChhh-hhhhhhhcchhccCcccccccchhhhhhh
Confidence 57788889999999999999 99999999999988776655554 67899999999999999999998876554
No 146
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=64.92 E-value=29 Score=24.07 Aligned_cols=68 Identities=15% Similarity=0.340 Sum_probs=42.7
Q ss_pred HHhCCCCCCCcccHHHHHHHHHHHH------HhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhHh
Q 027386 126 QLYDLKQQGFFIERQEVKQMVVATL------AESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLK 198 (224)
Q Consensus 126 ~~~D~~~~G~~I~~~e~~~~l~~~~------~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~ 198 (224)
++||...+.+ ||.+++.++++.-- .+.|.+++..-+-+++ .+...++...++-+=..+.++-+-+-+.
T Consensus 10 RLYDT~tS~Y-ITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII----~E~E~~g~~~lp~~~L~qlIr~yg~~~q 83 (107)
T TIGR01848 10 RLYDTETSSY-VTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQII----AEEESGGEPVLSTDFLTQIIRFYGGSMQ 83 (107)
T ss_pred cccCCCccce-eeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHH----HHHHhCCCCCCCHHHHHHHHHHhChhHH
Confidence 4678888888 99999999875310 1244555555444444 5555666666777666666666544333
No 147
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=64.76 E-value=5.5 Score=28.05 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhC
Q 027386 157 LSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRH 193 (224)
Q Consensus 157 ~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~ 193 (224)
+++++++.+- .++-.|..|.|.|.||+.-+...
T Consensus 4 LtDeQFdrLW----~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRLW----NEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHHH----TTS-B-TTS-EEHHHHHHHT---
T ss_pred ccHHHhhhhh----hhCcCCccCCEeHHHHHHHcccc
Confidence 6888888888 78888999999999999877643
No 148
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=62.61 E-value=21 Score=24.57 Aligned_cols=52 Identities=25% Similarity=0.517 Sum_probs=34.8
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHHHhCCCCCCcccHHHHHHHHHhChhhHhh
Q 027386 137 IERQEVKQMVVATLAESGMNLSDDVIETIID---KTFEEADTKHDGKIDKEEWRSLVLRHPSLLKN 199 (224)
Q Consensus 137 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~ 199 (224)
++.+|+..++... | ++.+++ ..+...+.+....+|-+++..++..+|.+++.
T Consensus 36 ~s~~eL~~~l~~~----g-------~~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~LikR 90 (105)
T cd03035 36 LDAATLERWLAKV----G-------WETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIKR 90 (105)
T ss_pred CCHHHHHHHHHHh----C-------hHHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCeeec
Confidence 7888888886543 3 133333 33455544422458899999999999998874
No 149
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=62.30 E-value=39 Score=22.20 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=36.4
Q ss_pred HhcCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHHcCCCCC
Q 027386 35 RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNG 97 (224)
Q Consensus 35 ~~~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g 97 (224)
+..+|+.+++..++..|..+=. +..+.++-.+.+.... ..++.+..+...+.....|
T Consensus 24 rR~Gfs~~~i~~l~~ayr~l~~-----~~~~~~~a~~~l~~~~-~~~~~v~~~~~Fi~~S~RG 80 (83)
T PF13720_consen 24 RRRGFSKEEISALRRAYRILFR-----SGLTLEEALEELEEEY-PDSPEVREIVDFIRNSKRG 80 (83)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHT-----SSS-HHHHHHHHHHHT-TSCHHHHHHHHHHHHTSS-
T ss_pred HHcCCCHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHhc-cCCHHHHHHHHHHHhCCCC
Confidence 4568999999999999999854 2256666666554422 2355677777776644444
No 150
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=60.70 E-value=14 Score=25.23 Aligned_cols=53 Identities=21% Similarity=0.490 Sum_probs=34.0
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHHHhCCCCCCcccHHHHHHHHHhChhhHh
Q 027386 137 IERQEVKQMVVATLAESGMNLSDDVIETIID---KTFEEADTKHDGKIDKEEWRSLVLRHPSLLK 198 (224)
Q Consensus 137 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~ 198 (224)
.+.+++..++... +. + ++.+++ ..+...+.+....++-+|+.+++..+|.+++
T Consensus 36 ~~~~~l~~~~~~~----~~--~---~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~Lik 91 (105)
T cd02977 36 PTKEELKELLAKL----GL--G---VEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLIK 91 (105)
T ss_pred CCHHHHHHHHHhc----CC--C---HHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCeee
Confidence 6777777775432 21 1 233343 3345555543456899999999999999875
No 151
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=60.34 E-value=81 Score=30.22 Aligned_cols=148 Identities=14% Similarity=0.176 Sum_probs=82.6
Q ss_pred CCCHHHHHH-HHHHHHhhcccCcCCCCCCHHHHHHHHhccCCc--chHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCC
Q 027386 38 VFSVSEIEA-LYELFKKISSAVIDDGLINKEEFQLALFKTNKK--ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPN 114 (224)
Q Consensus 38 ~~s~~~i~~-l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~ 114 (224)
..++.+|.. +++.+...|.. .-..++..++...+...... ...+...-|..... ..+.++|++|..+...+...
T Consensus 136 a~~p~qI~~wlrk~~ysvd~~--~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~-~k~dlsf~~f~~ly~~lmfs 212 (1267)
T KOG1264|consen 136 APTPLQIERWLRKQIYSVDQT--RENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGA-RKDDLSFEQFHLLYKKLMFS 212 (1267)
T ss_pred CCChHHHHHHHHhhheeccch--hhhheeHHhhhcccccceEEechHHHHHHHHhHhhh-ccccccHHHHHHHHHHHhhc
Confidence 356667744 77888888876 66779999999887653322 22333333333333 35679999999887765542
Q ss_pred CChHHHH--HHHHHHh--CCCCCCCcccHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHhCCC-CCCcccHHHHH
Q 027386 115 APIDDKI--EFSFQLY--DLKQQGFFIERQEVKQMVVATLAESGMNL--SDDVIETIIDKTFEEADTK-HDGKIDKEEWR 187 (224)
Q Consensus 115 ~~~~~~l--~~~F~~~--D~~~~G~~I~~~e~~~~l~~~~~~~~~~~--~~~~~~~~~~~~f~~~d~~-~dg~It~~eF~ 187 (224)
......+ ...|-.- +....-. ++..||.+++..- -+.+. ....++.++..+.+..-.+ ....++++||+
T Consensus 213 ~~~a~l~e~~~~~~~~~~~~~d~~v-V~~~ef~rFL~~~---Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv 288 (1267)
T KOG1264|consen 213 QQKAILLEFKKDFILGNTDRPDASV-VYLQEFQRFLIHE---QQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFV 288 (1267)
T ss_pred cchhhhhcccchhhhcCCCCccceE-eeHHHHHHHHHhh---hHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHH
Confidence 1111111 1112222 2222346 9999999997532 11111 1124444444333332222 34478999999
Q ss_pred HHHHh
Q 027386 188 SLVLR 192 (224)
Q Consensus 188 ~~~~~ 192 (224)
.++-.
T Consensus 289 ~fLFS 293 (1267)
T KOG1264|consen 289 TFLFS 293 (1267)
T ss_pred HHHhh
Confidence 98743
No 152
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=58.25 E-value=6.4 Score=22.09 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=20.4
Q ss_pred CCCCCCCcHHHHHHhcCCCHHHHHHHHH
Q 027386 22 NPSRGLEDPEILARETVFSVSEIEALYE 49 (224)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~s~~~i~~l~~ 49 (224)
-+.++.++...|++.+++|..||.....
T Consensus 8 nPYPs~~ek~~L~~~tgls~~Qi~~WF~ 35 (40)
T PF05920_consen 8 NPYPSKEEKEELAKQTGLSRKQISNWFI 35 (40)
T ss_dssp SGS--HHHHHHHHHHHTS-HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3556679999999999999999977653
No 153
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=58.22 E-value=55 Score=22.05 Aligned_cols=82 Identities=12% Similarity=0.059 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHH---hc-cCCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCC
Q 027386 60 DDGLINKEEFQLAL---FK-TNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGF 135 (224)
Q Consensus 60 ~~g~i~~~ef~~~l---~~-~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~ 135 (224)
.||.++..|...+- .. .+.+ .....++...+........++.+|...+...+........+..+|.+--. ||.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~A--DG~ 88 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLD-AEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYA--DGE 88 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcC-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCC
Confidence 36777777755432 12 2322 23345666666555555677888888776654222233445555665533 366
Q ss_pred cccHHHHHHH
Q 027386 136 FIERQEVKQM 145 (224)
Q Consensus 136 ~I~~~e~~~~ 145 (224)
++..|-.-+
T Consensus 89 -~~~~E~~~l 97 (104)
T cd07313 89 -LDEYEEHLI 97 (104)
T ss_pred -CCHHHHHHH
Confidence 666665443
No 154
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.18 E-value=8.3 Score=32.87 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 027386 116 PIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSD-DVIETIIDKTFEEADTKHDGKIDKEEWRSL 189 (224)
Q Consensus 116 ~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~-~~~~~~~~~~f~~~d~~~dg~It~~eF~~~ 189 (224)
.+.+.++++|+.+|+.+.|+ |+..-++.++... +.-.++ +-+.-+- +.+|+..-|.|-.++|+..
T Consensus 306 ~~s~q~rR~f~a~d~~d~nf-is~s~~~~vm~~~----N~~vse~a~v~l~~----~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNF-ISCSGLQIVMTAL----NRLVSEPAYVMLMR----QPLDPESLGIILLEDFLGE 371 (449)
T ss_pred CCCHHHHhhhhccCccCCCe-eecHHHHHHHHHh----cccccCHHHHHHhc----CccChhhcceEEecccccc
Confidence 34678999999999999999 9999999997765 322222 2222211 4455555555555555443
No 155
>PLN02222 phosphoinositide phospholipase C 2
Probab=57.23 E-value=53 Score=30.11 Aligned_cols=66 Identities=12% Similarity=0.283 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHh
Q 027386 117 IDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESG-MNLSDDVIETIIDKTFEEADT-KHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 117 ~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~~~f~~~d~-~~dg~It~~eF~~~~~~ 192 (224)
....+..+|..|-. ++. ++.++|..+|... -+ ...+.+.+..+++ .+.. .+.+.++++.|.+++..
T Consensus 23 ~~~ei~~if~~~~~--~~~-mt~~~l~~FL~~~---Q~~~~~~~~~~~~ii~----~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGV-MTVDHLHRFLIDV---QKQDKATREDAQSIIN----SASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCC-cCHHHHHHHHHHh---cCCccCCHHHHHHHHH----hhhhhhhccCcCHHHHHHHhcC
Confidence 34578999999864 468 9999999998765 12 2356777777774 3321 23567999999999986
No 156
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=56.53 E-value=28 Score=19.89 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhc
Q 027386 43 EIEALYELFKKISSAVIDDGLINKEEFQLALFK 75 (224)
Q Consensus 43 ~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~ 75 (224)
.+..+...|+++....-....++..||..++..
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 467788888888743113678999999988754
No 157
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=56.34 E-value=43 Score=21.34 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=35.0
Q ss_pred CCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHH
Q 027386 96 NGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVAT 149 (224)
Q Consensus 96 ~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~ 149 (224)
+.-+.|.-.+..++.... ..++..+...|+.=..+. |+.+||.+.++.+
T Consensus 6 sp~~~F~~L~~~l~~~l~----~~~~~~l~~~Y~~~k~~k-IsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKHLP----PSKMDLLQKHYEEFKKKK-ISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 445788888888877665 333555555555556788 9999999998877
No 158
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=55.06 E-value=24 Score=25.47 Aligned_cols=67 Identities=19% Similarity=0.309 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHHHhCCCCCCcccHHHHHHHHHhChhhHhhhccccccccccccc
Q 027386 137 IERQEVKQMVVATLAESGMNLSDDVIETIID---KTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYLKDITTTFP 213 (224)
Q Consensus 137 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~ 213 (224)
++.+|+..++... |. . ++.+++ ..+...+.+. ..++-++...++..+|.+++.=-+...+....+||
T Consensus 37 ~s~~eL~~~l~~~----~~--~---~~~lin~~~~~~k~L~~~~-~~ls~~e~i~ll~~~P~LikRPIv~~~~~~~iG~~ 106 (132)
T PRK13344 37 LTKEEILAILTKT----EN--G---IESIVSSKNRYAKALDCDI-EELSVNEVIDLIQENPRILKSPILIDDKRLQVGYK 106 (132)
T ss_pred CCHHHHHHHHHHh----CC--C---HHHhhccCcHHHHhCCcch-hcCCHHHHHHHHHhCccceeCcEEEeCCEEEeCCC
Confidence 7888888886643 21 1 122232 3344555333 46899999999999999877433333444555555
No 159
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=53.98 E-value=69 Score=21.96 Aligned_cols=14 Identities=21% Similarity=0.603 Sum_probs=7.0
Q ss_pred CCcccHHHHHHHHh
Q 027386 96 NGILGFEEFARALS 109 (224)
Q Consensus 96 ~g~I~f~Ef~~~~~ 109 (224)
+|.+.-..|-.++.
T Consensus 42 dG~L~rs~Fg~CIG 55 (100)
T PF08414_consen 42 DGLLPRSDFGECIG 55 (100)
T ss_dssp TTBEEGGGHHHHHT
T ss_pred CCcccHHHHHHhcC
Confidence 45555555555444
No 160
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=53.41 E-value=46 Score=23.92 Aligned_cols=67 Identities=19% Similarity=0.327 Sum_probs=39.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHHHhCCCCCCcccHHHHHHHHHhChhhHhhhccccccccccccc
Q 027386 137 IERQEVKQMVVATLAESGMNLSDDVIETIID---KTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYLKDITTTFP 213 (224)
Q Consensus 137 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~ 213 (224)
.+.+++.+++..+ +.. ++.+++ ..|...+.+. ..++-+|+..++..+|.+++.=-+...+....+||
T Consensus 37 ~~~~eL~~~l~~~----~~g-----~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~p~LikRPIi~~~~~~~vG~~ 106 (131)
T PRK01655 37 LTIDEIKQILRMT----EDG-----TDEIISTRSKVFQKLNVDV-ESLSLQDLIKLISDNPGLLRRPIIIDEKRLQVGYN 106 (131)
T ss_pred hhHHHHHHHHHHh----cCC-----HHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceEeCCEEEECCEEEecCC
Confidence 6677777775543 211 223332 3445555444 35899999999999999877433333444555555
No 161
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=51.11 E-value=42 Score=23.35 Aligned_cols=67 Identities=24% Similarity=0.409 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHHHhCCCCCCcccHHHHHHHHHhChhhHhhhccccccccccccc
Q 027386 137 IERQEVKQMVVATLAESGMNLSDDVIETIID---KTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYLKDITTTFP 213 (224)
Q Consensus 137 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~ 213 (224)
.+.+++..++..+ +. + ++.+++ ..+...+.+. ..+|-+|+..++..+|.+++.=-+...+....+||
T Consensus 37 ~~~~el~~~~~~~----~~--~---~~~l~n~~~~~~k~l~~~~-~~ls~~e~i~~l~~~p~LikRPii~~~~~~~vG~~ 106 (115)
T cd03032 37 LTKEELKEILSLT----EN--G---VEDIISTRSKAFKNLNIDI-DELSLSELIRLISEHPSLLRRPIIIDEKRLQIGYN 106 (115)
T ss_pred chHHHHHHHHHHh----cC--C---HHHHHhcCcHHHHHcCCCc-ccCCHHHHHHHHHhChhheeCCEEEeCCEEEeCCC
Confidence 6777887776543 21 1 223332 3345555443 45899999999999999887432333334444544
No 162
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=48.90 E-value=48 Score=19.55 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChh
Q 027386 139 RQEVKQMVVATLAESGMNLSDD---VIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPS 195 (224)
Q Consensus 139 ~~e~~~~l~~~~~~~~~~~~~~---~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~~~ 195 (224)
.++|..+...+....|.+++.. .+..-+...+... |.-+|.+|...+..+|+
T Consensus 2 d~~f~~~~~~i~~~~Gi~l~~~K~~~l~rRl~~rm~~~-----~~~~~~~y~~~L~~d~~ 56 (57)
T PF03705_consen 2 DAEFERFRELIYRRTGIDLSEYKRSLLERRLARRMRAL-----GLPSFAEYYELLRSDPD 56 (57)
T ss_dssp HHHHHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHH-----T---HHHHHHHHHH-T-
T ss_pred HHHHHHHHHHHHHHHCCCCchhhHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHhCCC
Confidence 3556666555566678777654 3444443333333 34589999999988774
No 163
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=48.66 E-value=39 Score=24.73 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHhccCCcchHHHHHHHHHHcCC-------CCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCC
Q 027386 62 GLINKEEFQLALFKTNKKESLFADRVFDLFDTK-------HNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQ 132 (224)
Q Consensus 62 g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~-------~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~ 132 (224)
+.++..||.++-.-.. -....++.++..|..+ ..+.|+|+-|..+|.......-+++..+.+|..|-...
T Consensus 6 ~~lsp~eF~qLq~y~e-ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE-YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp S-S-HHHHHHHHHHHH-H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eccCHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 4455555554321111 1122245555555333 34589999999999998865677888899999995544
No 164
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=48.49 E-value=57 Score=22.63 Aligned_cols=67 Identities=13% Similarity=0.246 Sum_probs=41.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHHHhCCCCCCcccHHHHHHHHHhChhhHhhhccccccccccccc
Q 027386 137 IERQEVKQMVVATLAESGMNLSDDVIETIID---KTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYLKDITTTFP 213 (224)
Q Consensus 137 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~ 213 (224)
+|.+|+..++... |.. ++.+++ ..+.....+. ..++-+++..++..+|.+++.=-+...+....+||
T Consensus 36 ~t~~el~~~l~~~----~~~-----~~~lin~~~~~y~~l~~~~-~~ls~~e~i~ll~~~P~LikRPIi~~~~~~~vG~~ 105 (112)
T cd03034 36 PTAAELRELLAKL----GIS-----PRDLLRTKEAPYKELGLAD-PELSDEELIDAMAAHPILIERPIVVTGDGAVLGRP 105 (112)
T ss_pred cCHHHHHHHHHHc----CCC-----HHHHHhcCCchHHHcCCCc-cCCCHHHHHHHHHhCcCcccCCEEEECCEEEEcCC
Confidence 7888888886543 311 334443 2344544443 45899999999999999887433333334455554
No 165
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=47.60 E-value=20 Score=24.74 Aligned_cols=68 Identities=24% Similarity=0.420 Sum_probs=37.8
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHHHhCCCCCCcccHHHHHHHHHhChhhHhhhccccccccccccc
Q 027386 137 IERQEVKQMVVATLAESGMNLSDDVIETIID---KTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYLKDITTTFP 213 (224)
Q Consensus 137 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~ 213 (224)
++.+|+..++..+ |... +.+++ ..+...+......++-++++.++..+|.+++.=-+........+||
T Consensus 33 ~s~~el~~~l~~~----~~~~-----~~lin~~~~~~k~l~~~~~~~~s~~e~i~~l~~~p~LikRPIi~~~~~~~iG~~ 103 (110)
T PF03960_consen 33 LSREELRELLSKL----GNGP-----DDLINTRSKTYKELGKLKKDDLSDEELIELLLENPKLIKRPIIVDGKKAVIGFN 103 (110)
T ss_dssp --HHHHHHHHHHH----TSSG-----GGGB-TTSHHHHHTTHHHCTTSBHHHHHHHHHHSGGGB-SSEEEETTEEEESSS
T ss_pred CCHHHHHHHHHHh----cccH-----HHHhcCccchHhhhhhhhhhhhhhHHHHHHHHhChhheeCCEEEECCEEEEeCC
Confidence 8888888887665 3111 01111 1224444122345899999999999999887443434444445544
No 166
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=46.63 E-value=59 Score=22.63 Aligned_cols=68 Identities=15% Similarity=0.262 Sum_probs=40.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHHHhCCCCCCcccHHHHHHHHHhChhhHhhhccccccccccccc
Q 027386 137 IERQEVKQMVVATLAESGMNLSDDVIETIID---KTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYLKDITTTFP 213 (224)
Q Consensus 137 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~ 213 (224)
+|.+|+..++..+ |... ...+++ ..+...+.+. ..++-+++..++..+|.+++.=-+........+||
T Consensus 36 ~t~~el~~~l~~~----g~~~----~~~lin~~~~~~~~l~~~~-~~ls~~e~i~~l~~~P~LikRPIi~~~~~~~vG~~ 106 (114)
T TIGR00014 36 PTKSELEAIFAKL----GLTV----AREMIRTKEALYKELGLSD-PNLSDQELLDAMVAHPILLERPIVVAGDGARIGRP 106 (114)
T ss_pred cCHHHHHHHHHHc----CCch----HHHHHhcCCcHHHHcCCCc-cCCCHHHHHHHHHHCcCcccCCeEEECCEEEEcCC
Confidence 7888888886543 4211 022332 2334444433 35788999999999999887533333444445554
No 167
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=45.57 E-value=60 Score=19.05 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=29.4
Q ss_pred cCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHH
Q 027386 37 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVF 88 (224)
Q Consensus 37 ~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf 88 (224)
+.||..++..|...|.. +.+.+..+...+...++++... +...|
T Consensus 5 ~~~t~~q~~~L~~~f~~-------~~~p~~~~~~~la~~l~l~~~~-V~~WF 48 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQE-------NPYPSKEEREELAKELGLTERQ-VKNWF 48 (57)
T ss_dssp SSSSHHHHHHHHHHHHH-------SSSCHHHHHHHHHHHHTSSHHH-HHHHH
T ss_pred CCCCHHHHHHHHHHHHH-------hccccccccccccccccccccc-cccCH
Confidence 57899999999999984 4567777766655555555432 34344
No 168
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=44.89 E-value=37 Score=16.14 Aligned_cols=16 Identities=13% Similarity=0.362 Sum_probs=9.5
Q ss_pred CCCCCCCcccHHHHHHH
Q 027386 129 DLKQQGFFIERQEVKQM 145 (224)
Q Consensus 129 D~~~~G~~I~~~e~~~~ 145 (224)
|.|+||. |+.-++.-+
T Consensus 1 DvN~DG~-vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGK-VNAIDLALL 16 (21)
T ss_dssp -TTSSSS-SSHHHHHHH
T ss_pred CCCCCCc-CCHHHHHHH
Confidence 4567777 776665543
No 169
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=44.12 E-value=55 Score=20.84 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=30.2
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 137 IERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 137 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
+++..+..+++. .++......+. ..++.=+.++|+.+||++.++.
T Consensus 9 ~~F~~L~~~l~~-------~l~~~~~~~l~----~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 9 MPFPMLFSALSK-------HLPPSKMDLLQ----KHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred ccHHHHHHHHHH-------HCCHHHHHHHH----HHHHHHHHCCCCHHHHHHHHHH
Confidence 565656665543 36666655555 4554446788999999999986
No 170
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=43.03 E-value=12 Score=29.17 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=45.6
Q ss_pred HHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhC
Q 027386 49 ELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFH 112 (224)
Q Consensus 49 ~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~ 112 (224)
..|-.+|..| .+|+++..++..+ ...-++-.--+.+.|.-.|.|+||.|+..||...+....
T Consensus 191 wqf~qld~~p-~d~~~sh~el~pl-~ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gikq 252 (259)
T KOG4004|consen 191 WQFGQLDQHP-IDGYLSHTELAPL-RAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQ 252 (259)
T ss_pred eeeccccCCC-ccccccccccccc-cCCcccHHhhchhhhhcccCCCCCceeHHHhhcccCcch
Confidence 3466777765 6899999998753 232233333368899999999999999999998876543
No 171
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=42.94 E-value=89 Score=22.63 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=17.9
Q ss_pred CCCcccHHHHHHHHHhChhhHhhh
Q 027386 177 HDGKIDKEEWRSLVLRHPSLLKNM 200 (224)
Q Consensus 177 ~dg~It~~eF~~~~~~~~~l~~~~ 200 (224)
.+|.||..||++.+-......+.+
T Consensus 41 rng~IsVreFVr~La~S~~yr~~f 64 (131)
T PF00427_consen 41 RNGQISVREFVRALAKSELYRKRF 64 (131)
T ss_dssp HTTSS-HHHHHHHHHTSHHHHHHH
T ss_pred HcCCCcHHHHHHHHHcCHHHHHHH
Confidence 468899999999998876655544
No 172
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=42.66 E-value=66 Score=23.02 Aligned_cols=65 Identities=9% Similarity=0.150 Sum_probs=40.3
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHHHhCCCCCCcccHHHHHHHHHhChhhHhhhccccccccccccc
Q 027386 137 IERQEVKQMVVATLAESGMNLSDDVIETIID---KTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYLKDITTTFP 213 (224)
Q Consensus 137 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~ 213 (224)
++.+|+...+..+ | ++.+++ ..+...+.+. ..++-++.+.+|..+|.|+++=-+........+||
T Consensus 38 ~t~~eL~~~l~~~----g-------~~~lin~~~~~~r~l~~~~-~~ls~~e~i~lm~~~P~LIKRPIi~~~~~~~iGf~ 105 (126)
T TIGR01616 38 WHADTLRPYFGNK----P-------VGSWFNRAAPRVKSGEVNP-DSIDEASALALMVSDPLLIRRPLMDLGGIRCAGFD 105 (126)
T ss_pred cCHHHHHHHHHHc----C-------HHHHHhccchHhhhCCCCc-ccCCHHHHHHHHHhCcCeEeCCEEEECCEEEEcCC
Confidence 7888888876542 2 223332 2334445333 45789999999999999887533334444556665
No 173
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=42.36 E-value=32 Score=18.21 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=14.5
Q ss_pred CCcccHHHHHHHHHhChhh
Q 027386 178 DGKIDKEEWRSLVLRHPSL 196 (224)
Q Consensus 178 dg~It~~eF~~~~~~~~~l 196 (224)
.|.|++++++.+..+--..
T Consensus 2 ~~~i~~~~~~d~a~rv~~f 20 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNF 20 (33)
T ss_pred CceecHHHHHHHHHHHHHH
Confidence 5789999999998874433
No 174
>PRK12559 transcriptional regulator Spx; Provisional
Probab=41.79 E-value=73 Score=22.91 Aligned_cols=68 Identities=22% Similarity=0.382 Sum_probs=43.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHHHhCCCCCCcccHHHHHHHHHhChhhHhhhccccccccccccc
Q 027386 137 IERQEVKQMVVATLAESGMNLSDDVIETIID---KTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYLKDITTTFP 213 (224)
Q Consensus 137 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~ 213 (224)
++.+|+..++... +. + ++.+++ ..+...+.+. ..++-++...++..+|.|++.=-+...+....+||
T Consensus 37 ~s~~el~~~l~~~----~~--g---~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~P~LikRPIi~~~~~~~iGf~ 106 (131)
T PRK12559 37 MTVDELKSILRLT----EE--G---ATEIISTRSKTFQDLNINI-EELSLNEFYKLIIEHPLMLRRPIMLDEKRLQIGFN 106 (131)
T ss_pred CCHHHHHHHHHHc----CC--C---HHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceEeCCEEEeCCEEEEcCC
Confidence 7888888886542 21 1 223333 3456665554 35799999999999999887433444555666666
Q ss_pred c
Q 027386 214 S 214 (224)
Q Consensus 214 ~ 214 (224)
.
T Consensus 107 ~ 107 (131)
T PRK12559 107 D 107 (131)
T ss_pred H
Confidence 3
No 175
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=41.51 E-value=97 Score=21.78 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 027386 121 IEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRS 188 (224)
Q Consensus 121 l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~ 188 (224)
+..+|-+.-..|+.. +|.+++..++.+. |....++.+..++ ..+. | .+.+|.+.
T Consensus 5 yvaAYlL~~lgG~~~-pTaddI~kIL~Aa----GveVd~~~~~l~~----~~L~----G-KdI~ELIa 58 (112)
T PTZ00373 5 YVAAYLMCVLGGNEN-PTKKEVKNVLSAV----NADVEDDVLDNFF----KSLE----G-KTPHELIA 58 (112)
T ss_pred HHHHHHHHHHcCCCC-CCHHHHHHHHHHc----CCCccHHHHHHHH----HHHc----C-CCHHHHHH
Confidence 445666666777888 9999999998877 8889888888888 4553 2 35566554
No 176
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=41.02 E-value=1.1e+02 Score=21.43 Aligned_cols=65 Identities=12% Similarity=0.188 Sum_probs=39.9
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHHHhCCCCCCcccHHHHHHHHHhChhhHhhhccccccccccccc
Q 027386 137 IERQEVKQMVVATLAESGMNLSDDVIETIID---KTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYLKDITTTFP 213 (224)
Q Consensus 137 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~ 213 (224)
++.+|+...+..+ | ++.+++ ..+...+.+. ..++-++....+..+|.|++.=-+...+....+||
T Consensus 37 ~s~~eL~~~l~~~----g-------~~~l~n~~~~~~r~~~~~~-~~ls~~e~~~ll~~~P~LikRPIv~~~~~~~vG~~ 104 (113)
T cd03033 37 WTAETLRPFFGDL----P-------VAEWFNPAAPRVKSGEVVP-EALDEEEALALMIADPLLIRRPLMQVGDRRMVGFD 104 (113)
T ss_pred CCHHHHHHHHHHc----C-------HHHHHhcccHHHHhcCCCc-cCCCHHHHHHHHHhCcceeeCCeEEECCEEEecCC
Confidence 7888888886532 3 122232 2334443333 35799999999999999887533434444555665
No 177
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=40.17 E-value=1.2e+02 Score=21.26 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=41.7
Q ss_pred HHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 027386 121 IEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSL 189 (224)
Q Consensus 121 l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~ 189 (224)
+-.+|-+.+..++.. .+..+++.++.++ |....++.+..++ ..+. |+ +.+|.+..
T Consensus 3 yvaAYLL~~lgGn~~-psa~DikkIl~sV----G~E~d~e~i~~vi----sel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNAS-PSASDIKKILESV----GAEIDDERINLVL----SELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCC-CCHHHHHHHHHHh----CcccCHHHHHHHH----HHhc----CC-CHHHHHHH
Confidence 445777888888888 9999999998877 9999999988888 4443 33 56666543
No 178
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=39.99 E-value=27 Score=30.92 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHH----cCCCCCcccHHHHHHHHhhhC
Q 027386 43 EIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLF----DTKHNGILGFEEFARALSVFH 112 (224)
Q Consensus 43 ~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~----d~~~~g~I~f~Ef~~~~~~~~ 112 (224)
+...+...| .+... .++.-+.+||.+.+.......-..++.++..- -....+.+.++..+++++.+.
T Consensus 287 ~~~~i~~ly-~~~~~--~~~~pt~eEF~e~v~~~~p~L~~~~~~~~~~~~V~hQaK~~~e~~lEkIiAf~aL~~ 357 (445)
T PF13608_consen 287 EEDEIEHLY-MLCKK--HGKLPTEEEFLEYVEEVNPELLEFAEEMIEEEEVEHQAKTASEKNLEKIIAFVALLM 357 (445)
T ss_pred HHHHHHHHH-HHHHH--hCCCCCHHHHHHHHHhcCchHHHHHHHHhCCCcEEecCCChHHHHHHHHHHHHHHHH
Confidence 344455555 55444 67889999999999765544444444444111 112345677777777766543
No 179
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=39.63 E-value=68 Score=28.59 Aligned_cols=91 Identities=16% Similarity=0.242 Sum_probs=60.9
Q ss_pred HHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC----C-CCCCcccHHHHHHHHHhChh
Q 027386 121 IEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEAD----T-KHDGKIDKEEWRSLVLRHPS 195 (224)
Q Consensus 121 l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d----~-~~dg~It~~eF~~~~~~~~~ 195 (224)
-..+|..|-....+. ++.-.|..+|++. |..-++.-+.+++..+ ..++ . ...+.++.+-|.+++...-.
T Consensus 88 eDLLFyLiaegq~ek-ipihKFiTALkst----GLrtsDPRLk~mMd~m-Kd~dq~~~e~S~gw~LdKDlFKkcI~sSI~ 161 (622)
T KOG0506|consen 88 EDLLFYLIAEGQSEK-IPIHKFITALKST----GLRTSDPRLKDMMDEM-KDVDQEENESSSGWLLDKDLFKKCIFSSIV 161 (622)
T ss_pred hhhhhHHhhcCCcCc-ccHHHHHHHHHHc----CCCcCCchHHHHHHHH-HHHHhhhcccccceeecHHHHHHhhccchh
Confidence 344688887666799 9999999998776 8877777777777543 3343 2 23457999999999876443
Q ss_pred hHhhhccccccccccccccccccc
Q 027386 196 LLKNMTLQYLKDITTTFPSFVFHS 219 (224)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~ 219 (224)
++. .....+.+...|-.|+.|-
T Consensus 162 lvS--qALrkqmVIPdw~~Fts~I 183 (622)
T KOG0506|consen 162 LVS--QALRKQMVIPDWEEFTSHI 183 (622)
T ss_pred HHH--HHHhcCccCCcHHHHHHHH
Confidence 332 2223344556677777664
No 180
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=39.60 E-value=48 Score=20.17 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=18.1
Q ss_pred CCCCcHHHHHHhcCCCHHHHHHHHHH
Q 027386 25 RGLEDPEILARETVFSVSEIEALYEL 50 (224)
Q Consensus 25 ~~~~~~~~l~~~~~~s~~~i~~l~~~ 50 (224)
+.+.++..|+..+++|.++++.++..
T Consensus 23 L~E~DL~~L~~kS~ms~qqVr~WFa~ 48 (56)
T PF11569_consen 23 LQEEDLDELCDKSRMSYQQVRDWFAE 48 (56)
T ss_dssp --TTHHHHHHHHTT--HHHHHHHHHH
T ss_pred ccHhhHHHHHHHHCCCHHHHHHHHHH
Confidence 45688999999999999998777643
No 181
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=39.20 E-value=1.3e+02 Score=24.36 Aligned_cols=57 Identities=25% Similarity=0.301 Sum_probs=37.1
Q ss_pred HhcCCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchHHHHHHHHHHcCCCCC
Q 027386 35 RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNG 97 (224)
Q Consensus 35 ~~~~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g 97 (224)
+...|+++++..+++.|+.+=. +| ++.++-.+.+... ...++.++.+.+.+.....|
T Consensus 196 ~r~g~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~s~rg 252 (255)
T PRK12461 196 RRRGFSSRAIRALKRAYKIIYR----SG-LSVQQAVAELELQ-QFESPEVEELIDFIKASKRG 252 (255)
T ss_pred hhcCCCHHHHHHHHHHHHHHHh----cC-CCHHHHHHHHHHh-ccCCHHHHHHHHHHHccCCC
Confidence 5568999999999999998853 33 4555544445432 23455567777777554444
No 182
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=38.04 E-value=93 Score=27.32 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHH
Q 027386 84 ADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVA 148 (224)
Q Consensus 84 ~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~ 148 (224)
+..|-+..|.|.+|.|+.+|=-.++..-.+-.+...+-...|.- .|.. ||.+++..++..
T Consensus 70 ir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~-ItVedLWeaW~~ 129 (575)
T KOG4403|consen 70 IRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKH-ITVEDLWEAWKE 129 (575)
T ss_pred HHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----Cccc-eeHHHHHHHHHh
Confidence 44455556666666666666555555444322222222223332 2333 666666666543
No 183
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=36.46 E-value=1.4e+02 Score=21.03 Aligned_cols=68 Identities=25% Similarity=0.416 Sum_probs=44.5
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHHHhCCCCCCcccHHHHHHHHHhChhhHhhhccccccccccccc
Q 027386 137 IERQEVKQMVVATLAESGMNLSDDVIETIID---KTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYLKDITTTFP 213 (224)
Q Consensus 137 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~~~~~~~~~~~~~~~ 213 (224)
++.+++.+++... |.. ++.+++ ..+...+. ....++-++....+..+|.+++.=-+...+.+..+||
T Consensus 38 ~s~~eL~~~l~~~----g~~-----~~~li~t~~~~~r~L~~-~~~~~~~~~~~~~i~~~~~LikRPivv~~~~~~iG~~ 107 (117)
T COG1393 38 PSREELKKILSKL----GDG-----VEELINTRGTTYRELNL-DKEDLSDEELIEALLENPSLIKRPIVVDNKKLRVGFN 107 (117)
T ss_pred CCHHHHHHHHHHc----Ccc-----HHHHHHhccchHHHcCC-cccccChHHHHHHHHhChhhccCCeEEeCCceEecCC
Confidence 8888888886543 322 334443 35567773 3346888999999999998777554544444666666
Q ss_pred c
Q 027386 214 S 214 (224)
Q Consensus 214 ~ 214 (224)
.
T Consensus 108 ~ 108 (117)
T COG1393 108 E 108 (117)
T ss_pred H
Confidence 4
No 184
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=36.12 E-value=1.3e+02 Score=20.99 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 027386 121 IEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLV 190 (224)
Q Consensus 121 l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~ 190 (224)
+..+|-+.-..|+.. +|.+++..++++. |....+..+..++ ..+. | .+.++.+.-.
T Consensus 3 yvaAylL~~l~g~~~-pTa~dI~~IL~Aa----GveVe~~~~~lf~----~~L~----G-Kdi~eLIa~g 58 (109)
T cd05833 3 YVAAYLLAVLGGNAS-PSAADVKKILGSV----GVEVDDEKLNKVI----SELE----G-KDVEELIAAG 58 (109)
T ss_pred HHHHHHHHHHcCCCC-CCHHHHHHHHHHc----CCCccHHHHHHHH----HHHc----C-CCHHHHHHHh
Confidence 344566666677778 9999999998876 8888888877777 4443 1 3556665543
No 185
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=34.38 E-value=62 Score=23.84 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=31.0
Q ss_pred chhhhhhhHhhhhhhcCCCCCCCCCCCcHHHHHHhcCCCHHHHHHHH
Q 027386 2 LQCIEGFKHLFASLLQCCDTNPSRGLEDPEILARETVFSVSEIEALY 48 (224)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~l~ 48 (224)
|+-++--+.||+.+.||-.++.-...++++++... .|.++|..|.
T Consensus 1 M~nl~~qkRLAA~il~vG~~Rvwidp~~~eei~~A--~TR~dIr~LI 45 (150)
T COG2147 1 MSNLRTQKRLAADILGVGENRVWIDPNEIEEIASA--ITREDIRALI 45 (150)
T ss_pred CchHHHHHHHHHHHHccCcceeeeChHHHHHHHHh--hhHHHHHHHH
Confidence 34455668899999998877765555666666655 6677776654
No 186
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.19 E-value=79 Score=27.50 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=11.3
Q ss_pred HHHHHHHhCCCCCCCcccHHHHH
Q 027386 121 IEFSFQLYDLKQQGFFIERQEVK 143 (224)
Q Consensus 121 l~~~F~~~D~~~~G~~I~~~e~~ 143 (224)
+-.+|++-|.|.||. ++.+||.
T Consensus 479 lgkiwklad~d~dg~-ld~eefa 500 (532)
T KOG1954|consen 479 LGKIWKLADIDKDGM-LDDEEFA 500 (532)
T ss_pred HHhhhhhhcCCcccC-cCHHHHH
Confidence 444555555555555 5555543
No 187
>PLN02228 Phosphoinositide phospholipase C
Probab=33.52 E-value=2.5e+02 Score=25.88 Aligned_cols=63 Identities=16% Similarity=0.307 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCC-ChHHHHHHHHHHhCCC----CCCCcccHHHHHHHH
Q 027386 81 SLFADRVFDLFDTKHNGILGFEEFARALSVFHPNA-PIDDKIEFSFQLYDLK----QQGFFIERQEVKQMV 146 (224)
Q Consensus 81 ~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~-~~~~~l~~~F~~~D~~----~~G~~I~~~e~~~~l 146 (224)
.+.+..||..+-.+ +.++.++|..++....... ...+.+..++..|... ..|. ++.+.|..++
T Consensus 23 ~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~gF~~yl 90 (567)
T PLN02228 23 PVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGL-VHLNAFYRYL 90 (567)
T ss_pred cHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCc-cCHHHHHHHh
Confidence 33455555555322 3466666555554443311 2233344445544322 2345 6666666655
No 188
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=33.51 E-value=1.2e+02 Score=18.58 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=25.5
Q ss_pred hcCCCHHHHHHHHHHHHhhcccCcCCCC----CCHHHHHHHHhccCCc
Q 027386 36 ETVFSVSEIEALYELFKKISSAVIDDGL----INKEEFQLALFKTNKK 79 (224)
Q Consensus 36 ~~~~s~~~i~~l~~~F~~~d~~~~~~g~----i~~~ef~~~l~~~~~~ 79 (224)
.|.||.+|+..|...|.. +|+ .+..+...+-...|++
T Consensus 5 RT~Ft~~Q~~~Le~~fe~-------~~y~~~~~~~~~r~~la~~lgl~ 45 (58)
T TIGR01565 5 RTKFTAEQKEKMRDFAEK-------LGWKLKDKRREEVREFCEEIGVT 45 (58)
T ss_pred CCCCCHHHHHHHHHHHHH-------cCCCCCCCCHHHHHHHHHHhCCC
Confidence 367999999999999986 455 6666655444334443
No 189
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=32.37 E-value=69 Score=22.80 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHhc----cCCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCC
Q 027386 60 DDGLINKEEFQLALFK----TNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGF 135 (224)
Q Consensus 60 ~~g~i~~~ef~~~l~~----~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~ 135 (224)
-||.++.+|...+... .+.+ ......+...++.-....+++.+++..+............++.++.+...| |.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~ 112 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLS-PEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GE 112 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGS-CHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CC
Confidence 5899998887754322 2322 233456666666544457888888877765332122234466667776655 55
Q ss_pred cccHHHH
Q 027386 136 FIERQEV 142 (224)
Q Consensus 136 ~I~~~e~ 142 (224)
++..|-
T Consensus 113 -~~~~E~ 118 (140)
T PF05099_consen 113 -ISPEEQ 118 (140)
T ss_dssp --SCCHH
T ss_pred -CCHHHH
Confidence 555543
No 190
>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed
Probab=32.31 E-value=61 Score=24.04 Aligned_cols=44 Identities=20% Similarity=0.113 Sum_probs=28.7
Q ss_pred hhhhhhhHhhhhhhcCCCCCCCCCCCcHHHHHHhcCCCHHHHHHHH
Q 027386 3 QCIEGFKHLFASLLQCCDTNPSRGLEDPEILARETVFSVSEIEALY 48 (224)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~l~ 48 (224)
.-+.--+.||+.|+||-.++.-...+++.+++.. .|.++|..|.
T Consensus 2 ~~l~~qkRLAA~iL~~G~~rVw~DP~~~~eI~~A--~tR~dIR~LI 45 (150)
T PRK08570 2 MDLSAQKRLAADILGVGVSRVWIDPEALEDVAEA--ITREDIRELI 45 (150)
T ss_pred cchHHHHHHHHHHHCCCccceeeCHHHHHHHHHH--hhHHHHHHHH
Confidence 3456668999999998777764444555555554 5556665543
No 191
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=32.10 E-value=77 Score=21.89 Aligned_cols=54 Identities=20% Similarity=0.381 Sum_probs=32.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHHHhCCCCC-CcccHHHHHHHHHhChhhHhh
Q 027386 137 IERQEVKQMVVATLAESGMNLSDDVIETIID---KTFEEADTKHD-GKIDKEEWRSLVLRHPSLLKN 199 (224)
Q Consensus 137 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~d-g~It~~eF~~~~~~~~~l~~~ 199 (224)
.+.+|+..++... +. + +..+++ ..+.....+.. ..++-++...++..+|.|++.
T Consensus 36 ~~~~el~~~~~~~----~~--~---~~~l~~~~~~~~~~l~~~~~~~~~s~~e~~~~l~~~p~LikR 93 (111)
T cd03036 36 PSKEELKKWLEKS----GL--P---LKKFFNTSGKSYRELGLKDKLPSLSEEEALELLSSDGMLIKR 93 (111)
T ss_pred ccHHHHHHHHHHc----CC--C---HHHHHhcCCchHHhCCcccccccCCHHHHHHHHHhCcCeeeC
Confidence 6777777775433 32 1 122222 23345444322 246889999999999998764
No 192
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=31.85 E-value=38 Score=21.17 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=19.0
Q ss_pred HHhCCCCCCCcccHHHHHHHHHH
Q 027386 126 QLYDLKQQGFFIERQEVKQMVVA 148 (224)
Q Consensus 126 ~~~D~~~~G~~I~~~e~~~~l~~ 148 (224)
++||...+.+ ||.+++.++++.
T Consensus 10 RLYDT~~s~Y-iTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSY-ITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCcee-EeHHHHHHHHHC
Confidence 5789999999 999999998753
No 193
>PRK10026 arsenate reductase; Provisional
Probab=31.77 E-value=1.1e+02 Score=22.51 Aligned_cols=53 Identities=23% Similarity=0.536 Sum_probs=34.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHHHhCCCCCCcccHHHHHHHHHhChhhHhh
Q 027386 137 IERQEVKQMVVATLAESGMNLSDDVIETIID---KTFEEADTKHDGKIDKEEWRSLVLRHPSLLKN 199 (224)
Q Consensus 137 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~ 199 (224)
+|.+|+...+... |. + .+.+++ ..+.....+.+ .+|.+++..++..+|.|++.
T Consensus 39 pt~~eL~~~l~~~----g~--~---~~~lint~~~~yr~L~~~~~-~ls~~e~l~ll~~~P~LIKR 94 (141)
T PRK10026 39 PTRDELVKLIADM----GI--S---VRALLRKNVEPYEELGLAED-KFTDDQLIDFMLQHPILINR 94 (141)
T ss_pred cCHHHHHHHHHhC----CC--C---HHHHHHcCCchHHHcCCCcc-CCCHHHHHHHHHhCccceeC
Confidence 7788888876532 31 1 223332 34455555443 47999999999999988774
No 194
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=31.54 E-value=1e+02 Score=18.96 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=19.2
Q ss_pred ChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHH
Q 027386 116 PIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATL 150 (224)
Q Consensus 116 ~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~ 150 (224)
-+-+++.-..+.+-.+..++.++.+|++.++....
T Consensus 12 l~l~RIh~mLkmf~~~~~~~~~s~~eL~~fL~~lv 46 (60)
T PF08672_consen 12 LPLDRIHSMLKMFPKDPGGYDISLEELQEFLDRLV 46 (60)
T ss_dssp EEHHHHHHHHHHH-GGG--TT--HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHH
Confidence 44567777777772222232378888888876653
No 195
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=29.89 E-value=1.9e+02 Score=19.94 Aligned_cols=51 Identities=24% Similarity=0.295 Sum_probs=38.0
Q ss_pred HHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC
Q 027386 123 FSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEAD 174 (224)
Q Consensus 123 ~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d 174 (224)
.+-+.+...++|. --+++-.+.+...+...|.++++++++.+++.....+.
T Consensus 55 aveq~~~~~~~G~-~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaAV~~m~ 105 (108)
T PF09682_consen 55 AVEQVAKEGGKGE-EKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAAVKEMN 105 (108)
T ss_pred HHHHHHhccCCcH-HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHh
Confidence 3455555555787 77787777777778888999999999999987665553
No 196
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=29.83 E-value=1.5e+02 Score=21.60 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=35.3
Q ss_pred CcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCC-------CCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 027386 97 GILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLK-------QQGFFIERQEVKQMVVATLAESGMNLSDDVIETIID 167 (224)
Q Consensus 97 g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~-------~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 167 (224)
+.++-.||...-...... ..+++.+.+.|..+ ..+. |+.+.|+.+|++.+ ..+++++-+..++.
T Consensus 6 ~~lsp~eF~qLq~y~eys---~kklkdvl~eF~~~g~~~~~~~~~~-Id~egF~~Fm~~yL---e~d~P~~lc~hLF~ 76 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYS---TKKLKDVLKEFHGDGSLAKYNPEEP-IDYEGFKLFMKTYL---EVDLPEDLCQHLFL 76 (138)
T ss_dssp S-S-HHHHHHHHHHHHH-------HHHHHHHH-HTSGGGGGEETTE-E-HHHHHHHHHHHT---T-S--HHHHHHHHH
T ss_pred eccCHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCcccccCCCCC-cCHHHHHHHHHHHH---cCCCCHHHHHHHHH
Confidence 567777777765443321 11355555555332 2346 99999999998874 55688887777773
No 197
>PF14003 YlbE: YlbE-like protein
Probab=29.06 E-value=22 Score=22.34 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=23.5
Q ss_pred HHHHHHHhChhhHhhhcccccccccccccccc
Q 027386 185 EWRSLVLRHPSLLKNMTLQYLKDITTTFPSFV 216 (224)
Q Consensus 185 eF~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 216 (224)
.|.+.+.++|+-+..|........+..||+.|
T Consensus 13 ~WYR~LsR~P~~l~~fe~~a~~~y~kT~p~rV 44 (65)
T PF14003_consen 13 IWYRILSRNPEELEAFEKEAKHFYKKTIPHRV 44 (65)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHhccccHHH
Confidence 36777888888888887777776667776654
No 198
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=28.19 E-value=61 Score=18.93 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=23.0
Q ss_pred CCCCCCCcHHHHHHhcCCCHHHHHHHHHH
Q 027386 22 NPSRGLEDPEILARETVFSVSEIEALYEL 50 (224)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~s~~~i~~l~~~ 50 (224)
.+.++.+++..++..++++..+|..+...
T Consensus 22 ~~~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (59)
T cd00086 22 NPYPSREEREELAKELGLTERQVKIWFQN 50 (59)
T ss_pred CCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 34456689999999999999999887554
No 199
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=27.91 E-value=17 Score=18.96 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=12.6
Q ss_pred HHHhCCCCCCcccHHH
Q 027386 170 FEEADTKHDGKIDKEE 185 (224)
Q Consensus 170 f~~~d~~~dg~It~~e 185 (224)
..+-|.|+|-+||.+|
T Consensus 5 L~qEDTDgn~qITIeD 20 (30)
T PF07492_consen 5 LEQEDTDGNFQITIED 20 (30)
T ss_pred hhccccCCCcEEEEec
Confidence 3678899999988764
No 200
>PRK05445 hypothetical protein; Validated
Probab=27.66 E-value=1.4e+02 Score=22.61 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCCCCCCCcccHHHHHHHH
Q 027386 119 DKIEFSFQLYDLKQQGFFIERQEVKQMV 146 (224)
Q Consensus 119 ~~l~~~F~~~D~~~~G~~I~~~e~~~~l 146 (224)
++.+++..++..-..++++|.+|+.+++
T Consensus 135 ~kY~RML~~w~~~~~~y~LS~eei~~Il 162 (164)
T PRK05445 135 DKYQRMLTVWRACPRQYHLSANEILQIL 162 (164)
T ss_pred HHHHHHHHHHHhCCCcCCCCHHHHHHHH
Confidence 3455555555444444446666666554
No 201
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=26.71 E-value=2e+02 Score=19.15 Aligned_cols=52 Identities=23% Similarity=0.187 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHhc-cCCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhC
Q 027386 61 DGLINKEEFQLALFK-TNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFH 112 (224)
Q Consensus 61 ~g~i~~~ef~~~l~~-~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~ 112 (224)
+-.|.-.+|...+.. .+.....+...+=..+|-..++.|+-=||-.+...+.
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFq 72 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQ 72 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT-
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHHh
Confidence 344666777766655 3333434445555566666677777766666665544
No 202
>PLN02222 phosphoinositide phospholipase C 2
Probab=25.47 E-value=2.7e+02 Score=25.67 Aligned_cols=64 Identities=20% Similarity=0.308 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCC---cchHHHHHHHHHHcC-CCCCcccHHHHHHHHhh
Q 027386 40 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNK---KESLFADRVFDLFDT-KHNGILGFEEFARALSV 110 (224)
Q Consensus 40 s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~---~~~~~~~~lf~~~d~-~~~g~I~f~Ef~~~~~~ 110 (224)
.+.++. .+|..+. +++.++.++|...|..... .....+..|+..+.. ...+.++++.|..++..
T Consensus 23 ~~~ei~---~if~~~~----~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIK---TIFEKYS----ENGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHH---HHHHHhc----CCCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 444554 4444443 2468999999998866222 123446677776532 23567999999988854
No 203
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=25.43 E-value=65 Score=22.78 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Q 027386 81 SLFADRVFDLFDTKHNGILGFEEFARALSV 110 (224)
Q Consensus 81 ~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~ 110 (224)
++..++++..+-.|..|++.|.||+.-+..
T Consensus 6 DeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 6 DEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred HHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 445678888888899999999999987764
No 204
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=25.43 E-value=88 Score=26.06 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=30.7
Q ss_pred chhhhhhhHhhhhhhcCCCCCCCCCCCcHHHHHHhcCCCHHHHHHHH
Q 027386 2 LQCIEGFKHLFASLLQCCDTNPSRGLEDPEILARETVFSVSEIEALY 48 (224)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~l~ 48 (224)
|+-|+.=+.|+..|+||..+++-...+++.++..- .|.++|+.|.
T Consensus 1 M~dLklQKRLAAsVL~cGk~RVWiDPnel~eIa~A--iTReDIRkLI 45 (357)
T PTZ00436 1 MVSLKLQARLAADILRCGRHRVWLDPNEASEISNA--NSRKSVRKLI 45 (357)
T ss_pred CcchHHHHHHHHHHhCCCCCceeeCHHHHHHHHHh--hhHHHHHHHH
Confidence 45667778999999998777775544565555544 5666666554
No 205
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=25.08 E-value=1.8e+02 Score=24.63 Aligned_cols=14 Identities=36% Similarity=0.517 Sum_probs=7.0
Q ss_pred CCCcccHHHHHHHHH
Q 027386 133 QGFFIERQEVKQMVV 147 (224)
Q Consensus 133 ~G~~I~~~e~~~~l~ 147 (224)
.|. ||++|-...++
T Consensus 300 ~G~-itReeal~~v~ 313 (343)
T TIGR03573 300 SGR-ITREEAIELVK 313 (343)
T ss_pred cCC-CCHHHHHHHHH
Confidence 355 55555555443
No 206
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=24.92 E-value=94 Score=18.38 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=13.5
Q ss_pred CCCCCCHHHHHHHHhccCCcchHHHHHHHHH
Q 027386 60 DDGLINKEEFQLALFKTNKKESLFADRVFDL 90 (224)
Q Consensus 60 ~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~ 90 (224)
+++.++..|+...+..........++++++.
T Consensus 19 g~~~ls~~eia~~l~~~~p~~~~~L~RimR~ 49 (51)
T PF08100_consen 19 GGGPLSLSEIAARLPTSNPSAPPMLDRIMRL 49 (51)
T ss_dssp TTS-BEHHHHHHTSTCT-TTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3456666666655432111222344555543
No 207
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=24.56 E-value=2.4e+02 Score=22.89 Aligned_cols=39 Identities=23% Similarity=0.416 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHhhcccCcCCCCCCHHHHHHHHhccCCcchH
Q 027386 38 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESL 82 (224)
Q Consensus 38 ~~s~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~ 82 (224)
.||-.+++.+.+++..++.+ +|+++..++.+.+ +...+.
T Consensus 176 tLSySEleAv~~IL~~L~~~---egrlse~eLAerl---GVSRs~ 214 (251)
T TIGR02787 176 TLSYSELEAVEHIFEELDGN---EGLLVASKIADRV---GITRSV 214 (251)
T ss_pred hccHhHHHHHHHHHHHhccc---cccccHHHHHHHH---CCCHHH
Confidence 47777888888888888752 6888888887766 544444
No 208
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=24.16 E-value=1.4e+02 Score=24.26 Aligned_cols=53 Identities=13% Similarity=0.250 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 027386 137 IERQEVKQMVVAT-LAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSL 189 (224)
Q Consensus 137 I~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~ 189 (224)
++..++..+|..- ....|..++++...-+...+|..-....++.||+.+|.+-
T Consensus 179 v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~Ke 232 (254)
T PF02864_consen 179 VPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCKE 232 (254)
T ss_dssp EEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHTS
T ss_pred ccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhhc
Confidence 7888898888753 4457788999999988877765554445678999999553
No 209
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=24.15 E-value=2e+02 Score=19.07 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhCCCCCCC
Q 027386 118 DDKIEFSFQLYDLKQQGF 135 (224)
Q Consensus 118 ~~~l~~~F~~~D~~~~G~ 135 (224)
.+.+..||++|..+++..
T Consensus 58 ~~EL~EA~rl~~~n~~~~ 75 (83)
T cd06404 58 QMELEEAFRLYELNKDSE 75 (83)
T ss_pred HHHHHHHHHHHHhcCccc
Confidence 455666777776665544
No 210
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=23.92 E-value=2e+02 Score=21.30 Aligned_cols=37 Identities=8% Similarity=0.124 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCC
Q 027386 121 IEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLS 158 (224)
Q Consensus 121 l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~ 158 (224)
+..-....|..+.+| +|..|++.++-.+....+...|
T Consensus 71 L~~rL~~le~~rg~Y-~TiSeLKT~vy~i~q~l~~~~P 107 (148)
T PF12486_consen 71 LADRLNQLEEQRGKY-MTISELKTAVYQIQQSLNQSVP 107 (148)
T ss_pred HHHHHHHHHHhcCCc-eeHHHHHHHHHHHHHHhcCCCC
Confidence 444566778888899 9999999988777555555566
No 211
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=23.87 E-value=2.7e+02 Score=19.61 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=29.6
Q ss_pred HHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 027386 123 FSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETII 166 (224)
Q Consensus 123 ~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 166 (224)
.+|-+.-..++.. +|.+++..++.+. |.....+.+..++
T Consensus 5 aAyll~~l~g~~~-pta~dI~~IL~Aa----Gvevd~~~~~~f~ 43 (113)
T PLN00138 5 AAYLLAVLGGNTC-PSAEDLKDILGSV----GADADDDRIELLL 43 (113)
T ss_pred HHHHHHHhcCCCC-CCHHHHHHHHHHc----CCcccHHHHHHHH
Confidence 3455555566777 9999999998776 8888888877777
No 212
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.54 E-value=2.5e+02 Score=20.67 Aligned_cols=61 Identities=18% Similarity=0.365 Sum_probs=33.0
Q ss_pred HHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 027386 123 FSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 123 ~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~ 192 (224)
.+|.+.+.| |. ++..|...+- .+++. ...++.+++..++. ....-+...+++-.|-..+++
T Consensus 34 Llf~Vm~AD--G~-v~~~E~~a~r-~il~~-~f~i~~~~l~ali~----~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 34 LLFHVMEAD--GT-VSESEREAFR-AILKE-NFGIDGEELDALIE----AGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHHhcc--cC-cCHHHHHHHH-HHHHH-HcCCCHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHH
Confidence 457777655 44 5555554432 22222 35677777777772 332223344677777766664
No 213
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=23.49 E-value=2.3e+02 Score=18.83 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=47.2
Q ss_pred CCCcccHHHHHHHHhhhCCC-CChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 027386 95 HNGILGFEEFARALSVFHPN-APIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEA 173 (224)
Q Consensus 95 ~~g~I~f~Ef~~~~~~~~~~-~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~ 173 (224)
.||.++-.|--..-..+... +-..+....+...+....... .+..++.+.+.. ..+++....++..++...
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~r~~~l~~L~~vA 83 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEA-PDLYEFTSLIKE-------HFDYEERLELVEALWEVA 83 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHH-------hCCHHHHHHHHHHHHHHH
Confidence 46788887766655433221 223344555556665544555 666777666543 246777777887777666
Q ss_pred CCCCCCcccHHH
Q 027386 174 DTKHDGKIDKEE 185 (224)
Q Consensus 174 d~~~dg~It~~e 185 (224)
-.| |.++-.|
T Consensus 84 ~AD--G~~~~~E 93 (104)
T cd07313 84 YAD--GELDEYE 93 (104)
T ss_pred Hhc--CCCCHHH
Confidence 554 5566555
No 214
>PRK10667 Hha toxicity attenuator; Provisional
Probab=23.19 E-value=2.8e+02 Score=19.63 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhHhhh
Q 027386 160 DVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNM 200 (224)
Q Consensus 160 ~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~~ 200 (224)
+.+++.++..|..+...+ |++.|..+|-+.+..+...|
T Consensus 74 ~~ideYLDeTy~LF~sy~---I~~~dl~~W~k~~~~L~~~~ 111 (122)
T PRK10667 74 EQIDEYLDDTYMLFSSYG---INDQDLQKWRKSGNRLFRCF 111 (122)
T ss_pred HHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHH
Confidence 467777877777776543 89999999999877777665
No 215
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=22.95 E-value=69 Score=22.30 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=23.3
Q ss_pred CcccHHHHHHHHHhChhhHhhhcccccc-ccccccc
Q 027386 179 GKIDKEEWRSLVLRHPSLLKNMTLQYLK-DITTTFP 213 (224)
Q Consensus 179 g~It~~eF~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 213 (224)
..++-+|+..++..+|.+++.=-+.... .+..+||
T Consensus 73 ~~ls~~e~~~~i~~~p~LikRPIi~~~~~~~~vG~~ 108 (117)
T TIGR01617 73 LDLSDKEALELLAEDPALLRRPLIVDTKNRLLIGFK 108 (117)
T ss_pred ccCCHHHHHHHHHhCcceEecCEEEeCCceEEecCC
Confidence 4589999999999999987643233222 3444544
No 216
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=22.91 E-value=1.1e+02 Score=18.79 Aligned_cols=26 Identities=8% Similarity=0.148 Sum_probs=18.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 027386 137 IERQEVKQMVVATLAESGMNLSDDVIETII 166 (224)
Q Consensus 137 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 166 (224)
|+.++|..+++.+ .+..+.++++.+.
T Consensus 30 it~~DF~~Al~~~----kpSVs~~dl~~ye 55 (62)
T PF09336_consen 30 ITMEDFEEALKKV----KPSVSQEDLKKYE 55 (62)
T ss_dssp BCHHHHHHHHHTC----GGSS-HHHHHHHH
T ss_pred CCHHHHHHHHHHc----CCCCCHHHHHHHH
Confidence 8888888886554 6667777777665
No 217
>PF10757 YbaJ: Biofilm formation regulator YbaJ; InterPro: IPR019693 YbaJ regulates biofilm formation. It also has an important role in the regulation of motility in the biofilm. YbaJ functions in increasing conjugation, aggregation and decreasing the motility, resulting in an increase of biofilm [].
Probab=22.37 E-value=2.9e+02 Score=19.56 Aligned_cols=38 Identities=13% Similarity=0.295 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhHhhh
Q 027386 160 DVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNM 200 (224)
Q Consensus 160 ~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~~ 200 (224)
+.+++.++..|..|...+ |++.|..+|-+.+..+...|
T Consensus 74 ~~ideYLDeTy~LFssy~---In~~dL~~Wqk~~~~L~~~~ 111 (122)
T PF10757_consen 74 ELIDEYLDETYMLFSSYG---INDSDLQKWQKSNQRLFRCF 111 (122)
T ss_pred HHHHHHHHHHHHHhcCcc---CCHHHHHHHHHHHHHHHHHH
Confidence 467777888777776543 99999999999877777665
No 218
>COG5562 Phage envelope protein [General function prediction only]
Probab=22.34 E-value=74 Score=23.13 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHhh
Q 027386 85 DRVFDLFDTKHNGILGFEEFARALSV 110 (224)
Q Consensus 85 ~~lf~~~d~~~~g~I~f~Ef~~~~~~ 110 (224)
..+-.....+..|..+|+||+..++.
T Consensus 75 ~~i~~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 75 TLIKTALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHh
Confidence 44556667778899999999998864
No 219
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=22.13 E-value=2.6e+02 Score=18.88 Aligned_cols=55 Identities=11% Similarity=0.181 Sum_probs=36.5
Q ss_pred CCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhChhhHhhh
Q 027386 132 QQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNM 200 (224)
Q Consensus 132 ~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~dg~It~~eF~~~~~~~~~l~~~~ 200 (224)
+.|. +|.++...+- +.....+.+..++ ...- .-|.--|.-|+.+++.+|-+.+.+
T Consensus 32 ~~gI-lT~~~~e~I~-------a~~T~~~k~~~LL----diLp--~RG~~AF~~F~~aL~e~~~l~~~l 86 (94)
T cd08327 32 QEGI-LTESHVEEIE-------SQTTSRRKTMKLL----DILP--SRGPKAFHAFLDSLEEFPWVRDKL 86 (94)
T ss_pred hCCC-CCHHHHHHHH-------ccCChHHHHHHHH----HHHH--hhChhHHHHHHHHHHHHHHHHHHH
Confidence 3678 9988887763 2334556666666 3433 234568999999999887666544
No 220
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=21.55 E-value=1.2e+02 Score=20.04 Aligned_cols=45 Identities=11% Similarity=0.279 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--CCCCcccHHHH
Q 027386 138 ERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADT--KHDGKIDKEEW 186 (224)
Q Consensus 138 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~--~~dg~It~~eF 186 (224)
+..||...+..- ...++..+++.+++.+++.+-. ...+.|.+.+|
T Consensus 2 ~k~eli~~i~~~----~~~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gf 48 (94)
T TIGR00988 2 TKSELIERIATQ----QSHLPAKDVEDAVKTMLEHMASALAQGDRIEIRGF 48 (94)
T ss_pred CHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCc
Confidence 456666654321 2346777777777665554421 23445655554
No 221
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=21.39 E-value=5.2e+02 Score=22.71 Aligned_cols=89 Identities=21% Similarity=0.294 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHhccC-CcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCC--ccc
Q 027386 62 GLINKEEFQLALFKTN-KKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGF--FIE 138 (224)
Q Consensus 62 g~i~~~ef~~~l~~~~-~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~--~I~ 138 (224)
..|....|..++.... +.....+-++=.-+|...++.|+--||-.+...+.. ...+-.-++.+...+-|+ ++|
T Consensus 189 ~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqP----w~tllkNWq~LavtHPGYmAFLT 264 (563)
T KOG1785|consen 189 TIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQP----WKTLLKNWQTLAVTHPGYMAFLT 264 (563)
T ss_pred ccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhcc----HHHHHHhhhhhhccCCceeEEee
Confidence 3455666666665422 222233344555577778888887777776666543 223444566777777775 278
Q ss_pred HHHHHHHHHHHHHhcC
Q 027386 139 RQEVKQMVVATLAESG 154 (224)
Q Consensus 139 ~~e~~~~l~~~~~~~~ 154 (224)
.+|++.-+..+..++|
T Consensus 265 YDEVk~RLqk~~~KpG 280 (563)
T KOG1785|consen 265 YDEVKARLQKYIKKPG 280 (563)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 8999998887765544
No 222
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=21.25 E-value=4e+02 Score=22.66 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=10.8
Q ss_pred CCcccHHHHHHHHHh-ChhhHhhh
Q 027386 178 DGKIDKEEWRSLVLR-HPSLLKNM 200 (224)
Q Consensus 178 dg~It~~eF~~~~~~-~~~l~~~~ 200 (224)
.|.+=|.|..+-++. +|.+.+.|
T Consensus 93 SGflLYKEl~rrlk~~nP~lae~F 116 (357)
T PLN02508 93 SGFLLYKELGRRLKKTNPVVAEIF 116 (357)
T ss_pred ccchHHHHHHHhcccCChHHHHHH
Confidence 355555555554432 44444444
No 223
>COG1508 RpoN DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]
Probab=21.16 E-value=5.9e+02 Score=22.66 Aligned_cols=88 Identities=14% Similarity=0.257 Sum_probs=51.6
Q ss_pred CCcccHHHHHHHHhhhCCCCChHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC
Q 027386 96 NGILGFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFFIERQEVKQMVVATLAESGMNLSDDVIETIIDKTFEEADT 175 (224)
Q Consensus 96 ~g~I~f~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~ 175 (224)
.+.-|+.+++..-..... .+..+..-..+-+-..|.+|+ ++.+ +..+...+ +. .+.++++.+. ..++.+|+
T Consensus 87 ~~~~tL~e~L~~Ql~~~~-~s~~e~~Ia~~lI~~Ldd~GY-l~~~-le~~~~~l----~~-~~~~eve~vl-~~iQ~ldP 157 (444)
T COG1508 87 AATKTLSEYLLEQLRLLP-LSDTERAIATYLIDALDDEGY-LTES-LEEIAELL----GS-VDEEEVEKVL-ARIQSLDP 157 (444)
T ss_pred ccccCHHHHHHHHHhhcC-CChHHHHHHHHHHhhcCcCCC-cccC-HHHHHHhc----cc-ccHHHHHHHH-HHHhcCCC
Confidence 345678888776665543 333333333333334456676 5554 33332211 33 5667777776 44588999
Q ss_pred CCCCcccHHHHHHHHHh
Q 027386 176 KHDGKIDKEEWRSLVLR 192 (224)
Q Consensus 176 ~~dg~It~~eF~~~~~~ 192 (224)
-|-|.=++.|....-.+
T Consensus 158 ~GV~Ar~l~EcL~lQL~ 174 (444)
T COG1508 158 AGVGARDLRECLLLQLE 174 (444)
T ss_pred CccccCcHHHHHHHHHH
Confidence 99888888887665544
No 224
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=21.02 E-value=1.4e+02 Score=15.42 Aligned_cols=13 Identities=38% Similarity=0.695 Sum_probs=9.8
Q ss_pred CCCCCCHHHHHHH
Q 027386 60 DDGLINKEEFQLA 72 (224)
Q Consensus 60 ~~g~i~~~ef~~~ 72 (224)
.+|.||.+||...
T Consensus 13 ~~G~IseeEy~~~ 25 (31)
T PF09851_consen 13 DKGEISEEEYEQK 25 (31)
T ss_pred HcCCCCHHHHHHH
Confidence 4688888888764
No 225
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=20.89 E-value=2.2e+02 Score=17.54 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=11.5
Q ss_pred HHhCCCCCCcccHHHHHHH
Q 027386 171 EEADTKHDGKIDKEEWRSL 189 (224)
Q Consensus 171 ~~~d~~~dg~It~~eF~~~ 189 (224)
..++...=|.-++.+|++.
T Consensus 38 ~~f~~~~yG~~~l~~ll~~ 56 (74)
T PF12872_consen 38 PDFDPRDYGFSSLSELLES 56 (74)
T ss_dssp TT--TCCTTSSSHHHHHHT
T ss_pred CCCCccccCCCcHHHHHHh
Confidence 4566666677777777754
No 226
>cd01418 Ribosomal_L19e_A Ribosomal protein L19e, archaeal. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=20.30 E-value=1.4e+02 Score=21.97 Aligned_cols=39 Identities=23% Similarity=0.145 Sum_probs=25.2
Q ss_pred hhHhhhhhhcCCCCCCCCCCCcHHHHHHhcCCCHHHHHHHH
Q 027386 8 FKHLFASLLQCCDTNPSRGLEDPEILARETVFSVSEIEALY 48 (224)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~l~ 48 (224)
=+.||+.|++|-.++.-...+++.+++.. .|.++|..|.
T Consensus 4 QkRLAA~iL~~G~~rVw~DP~~~~eI~~A--~tR~dIR~LI 42 (145)
T cd01418 4 QRRLAADILGVGINRVWIDPERLEEVAEA--ITRDDIRALI 42 (145)
T ss_pred HHHHHHHHHCCCCCeeeeChHHHHHHHHh--hhHHHHHHHH
Confidence 36789999998777764444666665554 5556665543
No 227
>cd00481 Ribosomal_L19e Ribosomal protein L19e. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=20.16 E-value=1.4e+02 Score=22.05 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=24.8
Q ss_pred hhHhhhhhhcCCCCCCCCCCCcHHHHHHhcCCCHHHHHHHH
Q 027386 8 FKHLFASLLQCCDTNPSRGLEDPEILARETVFSVSEIEALY 48 (224)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~i~~l~ 48 (224)
=+.||+.|++|-.+++-...+++.+++.. .|.++|..|.
T Consensus 4 QkRLAA~vL~~G~~rVW~DP~~~~eI~~A--~tR~dIR~LI 42 (145)
T cd00481 4 QKRLAADILKCGKNRVWIDPNELEEIANA--NTREDIRKLI 42 (145)
T ss_pred HHHHHHHHHCCCCCceeeCHHHHHHHHHh--hhHHHHHHHH
Confidence 36789999998777764444555555544 5556665543
No 228
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=20.03 E-value=6.8e+02 Score=24.66 Aligned_cols=79 Identities=15% Similarity=0.157 Sum_probs=56.9
Q ss_pred HHHHHHHHhccCCcchHHHHHHHHHHcCCCCCcccHHHHHHHHhhhCCCC---------ChHHHHHHHHHHhCCCC----
Q 027386 66 KEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNA---------PIDDKIEFSFQLYDLKQ---- 132 (224)
Q Consensus 66 ~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~I~f~Ef~~~~~~~~~~~---------~~~~~l~~~F~~~D~~~---- 132 (224)
.+.|..++.. +.....+++||..+..+....++.++++.++..-..+. -...+++.+...|..++
T Consensus 207 ~e~f~~~l~k--lcpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~ 284 (1189)
T KOG1265|consen 207 LEKFYRLLNK--LCPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAE 284 (1189)
T ss_pred HHHHHHHHHh--cCCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhh
Confidence 3444444432 23344589999999888878999999999997655432 23456888888887764
Q ss_pred CCCcccHHHHHHHHH
Q 027386 133 QGFFIERQEVKQMVV 147 (224)
Q Consensus 133 ~G~~I~~~e~~~~l~ 147 (224)
.|+ |+.+-|..++.
T Consensus 285 ~gq-ms~dgf~ryl~ 298 (1189)
T KOG1265|consen 285 KGQ-MSTDGFVRYLM 298 (1189)
T ss_pred ccc-cchhhhHHHhh
Confidence 688 99999988863
Done!