Query 027388
Match_columns 224
No_of_seqs 153 out of 2448
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 09:13:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1975 mRNA cap methyltransfe 99.9 1.7E-25 3.7E-30 175.5 14.0 190 27-219 60-250 (389)
2 COG2226 UbiE Methylase involve 99.9 6.7E-24 1.5E-28 164.2 13.9 144 34-205 11-155 (238)
3 PF03291 Pox_MCEL: mRNA cappin 99.9 8E-23 1.7E-27 166.6 12.8 182 37-218 7-198 (331)
4 PF01209 Ubie_methyltran: ubiE 99.9 6.5E-23 1.4E-27 160.1 10.0 144 34-205 7-152 (233)
5 PLN02233 ubiquinone biosynthes 99.9 8.3E-21 1.8E-25 151.2 16.9 147 34-205 33-181 (261)
6 PLN02396 hexaprenyldihydroxybe 99.9 1.4E-20 3E-25 153.1 16.3 108 84-209 131-238 (322)
7 PLN02244 tocopherol O-methyltr 99.8 7.8E-20 1.7E-24 150.9 17.1 107 83-206 117-223 (340)
8 TIGR02752 MenG_heptapren 2-hep 99.8 1.1E-19 2.3E-24 142.7 15.9 144 34-205 5-150 (231)
9 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.9E-20 4.1E-25 142.8 10.0 108 83-210 58-165 (243)
10 PF12847 Methyltransf_18: Meth 99.8 1.6E-19 3.5E-24 125.8 12.0 110 84-207 1-112 (112)
11 PF08241 Methyltransf_11: Meth 99.8 2.1E-19 4.6E-24 121.1 11.0 95 89-204 1-95 (95)
12 KOG1540 Ubiquinone biosynthesi 99.8 1.4E-18 3E-23 132.9 15.9 157 37-220 63-230 (296)
13 PRK11036 putative S-adenosyl-L 99.8 3.2E-19 6.9E-24 142.0 12.0 149 38-209 4-152 (255)
14 PRK05785 hypothetical protein; 99.8 1.5E-18 3.2E-23 135.4 15.0 139 34-208 9-150 (226)
15 PRK10258 biotin biosynthesis p 99.8 2.2E-18 4.8E-23 136.9 15.1 137 34-209 7-143 (251)
16 PTZ00098 phosphoethanolamine N 99.8 4.8E-18 1E-22 135.5 16.2 115 74-206 42-156 (263)
17 PF13847 Methyltransf_31: Meth 99.8 4.5E-18 9.7E-23 125.1 12.7 109 83-208 2-112 (152)
18 TIGR00740 methyltransferase, p 99.8 1.8E-17 4E-22 130.7 16.3 108 82-206 51-161 (239)
19 COG2230 Cfa Cyclopropane fatty 99.8 4.5E-18 9.7E-23 134.1 12.1 134 72-223 60-202 (283)
20 PLN02490 MPBQ/MSBQ methyltrans 99.8 8.9E-18 1.9E-22 137.2 12.9 119 83-222 112-250 (340)
21 KOG1270 Methyltransferases [Co 99.8 2.7E-18 5.8E-23 132.0 8.0 109 85-209 90-198 (282)
22 PRK15068 tRNA mo(5)U34 methylt 99.8 2E-17 4.4E-22 135.3 13.5 109 79-205 117-225 (322)
23 PRK15451 tRNA cmo(5)U34 methyl 99.8 2.4E-17 5.3E-22 130.5 13.4 108 82-206 54-164 (247)
24 PRK11207 tellurite resistance 99.7 2.3E-17 5E-22 126.2 12.5 105 82-204 28-132 (197)
25 PRK00216 ubiE ubiquinone/menaq 99.7 8.7E-17 1.9E-21 126.6 16.0 146 33-205 10-157 (239)
26 PF02353 CMAS: Mycolic acid cy 99.7 1.7E-17 3.6E-22 132.5 12.0 115 73-205 51-165 (273)
27 PLN02336 phosphoethanolamine N 99.7 6.8E-17 1.5E-21 139.5 16.7 112 76-206 258-369 (475)
28 TIGR00452 methyltransferase, p 99.7 9.9E-17 2.1E-21 130.1 16.2 110 78-205 115-224 (314)
29 PRK14103 trans-aconitate 2-met 99.7 2.4E-17 5.3E-22 131.2 11.5 106 76-207 21-127 (255)
30 PF13649 Methyltransf_25: Meth 99.7 2.7E-17 6E-22 112.5 9.2 96 88-200 1-101 (101)
31 PRK01683 trans-aconitate 2-met 99.7 5.5E-17 1.2E-21 129.4 12.0 109 76-208 23-132 (258)
32 TIGR00477 tehB tellurite resis 99.7 7.8E-17 1.7E-21 123.1 12.2 105 81-204 27-131 (195)
33 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 4.7E-16 1E-20 121.1 16.2 139 37-205 2-142 (223)
34 PF13489 Methyltransf_23: Meth 99.7 1.3E-16 2.9E-21 117.9 11.3 99 82-209 20-118 (161)
35 PRK08317 hypothetical protein; 99.7 5.6E-16 1.2E-20 121.9 15.2 113 76-207 11-125 (241)
36 TIGR02072 BioC biotin biosynth 99.7 2.6E-16 5.7E-21 123.8 13.1 105 83-209 33-138 (240)
37 KOG1271 Methyltransferases [Ge 99.7 3.4E-16 7.4E-21 114.0 12.2 142 68-222 50-199 (227)
38 smart00828 PKS_MT Methyltransf 99.7 2.1E-16 4.5E-21 123.5 12.1 119 86-222 1-138 (224)
39 TIGR03587 Pse_Me-ase pseudamin 99.7 6.2E-16 1.4E-20 118.7 13.9 100 82-205 41-141 (204)
40 PF05401 NodS: Nodulation prot 99.7 8.6E-16 1.9E-20 114.4 12.7 109 80-207 39-147 (201)
41 PRK11873 arsM arsenite S-adeno 99.7 6.6E-16 1.4E-20 124.1 13.0 106 82-205 75-182 (272)
42 PF03848 TehB: Tellurite resis 99.7 5.7E-16 1.2E-20 116.5 11.6 106 81-205 27-132 (192)
43 COG4106 Tam Trans-aconitate me 99.7 1.9E-16 4.2E-21 118.4 8.4 109 76-208 22-131 (257)
44 PRK12335 tellurite resistance 99.7 8.9E-16 1.9E-20 124.1 13.1 102 84-204 120-221 (287)
45 PRK11705 cyclopropane fatty ac 99.7 1.8E-15 3.9E-20 126.5 13.7 109 76-206 159-267 (383)
46 PRK00107 gidB 16S rRNA methylt 99.7 4.9E-15 1.1E-19 112.0 14.4 105 81-208 42-147 (187)
47 PF08242 Methyltransf_12: Meth 99.7 4.6E-17 9.9E-22 111.0 2.5 98 89-202 1-99 (99)
48 PRK06922 hypothetical protein; 99.7 2.1E-15 4.5E-20 130.8 13.2 111 83-206 417-537 (677)
49 smart00138 MeTrc Methyltransfe 99.6 1.8E-15 3.9E-20 120.7 11.9 117 84-207 99-243 (264)
50 KOG4300 Predicted methyltransf 99.6 2.5E-15 5.3E-20 111.7 11.6 104 84-205 76-181 (252)
51 TIGR03840 TMPT_Se_Te thiopurin 99.6 5.7E-15 1.2E-19 114.0 13.8 128 70-205 20-151 (213)
52 PRK00121 trmB tRNA (guanine-N( 99.6 2.4E-15 5.1E-20 115.6 11.6 124 84-221 40-174 (202)
53 TIGR00537 hemK_rel_arch HemK-r 99.6 6.4E-15 1.4E-19 111.2 13.1 123 82-222 17-159 (179)
54 PF08003 Methyltransf_9: Prote 99.6 6.1E-15 1.3E-19 116.7 12.4 125 79-223 110-262 (315)
55 TIGR00138 gidB 16S rRNA methyl 99.6 1.7E-14 3.6E-19 108.8 14.2 101 84-207 42-143 (181)
56 TIGR02021 BchM-ChlM magnesium 99.6 2.5E-14 5.3E-19 111.4 15.5 115 72-205 41-157 (219)
57 PRK00377 cbiT cobalt-precorrin 99.6 2.2E-14 4.7E-19 110.0 14.1 125 78-221 34-163 (198)
58 PF05175 MTS: Methyltransferas 99.6 3.7E-14 8.1E-19 106.0 14.8 115 79-208 26-142 (170)
59 PRK11088 rrmA 23S rRNA methylt 99.6 1.5E-14 3.3E-19 116.1 13.5 101 83-213 84-188 (272)
60 PRK05134 bifunctional 3-demeth 99.6 3.6E-14 7.9E-19 111.5 15.4 108 82-208 46-153 (233)
61 PRK13255 thiopurine S-methyltr 99.6 3.1E-14 6.7E-19 110.3 14.6 130 68-204 21-153 (218)
62 PRK08287 cobalt-precorrin-6Y C 99.6 3.2E-14 7E-19 108.1 14.4 122 78-222 25-150 (187)
63 TIGR02469 CbiT precorrin-6Y C5 99.6 2.9E-14 6.4E-19 100.8 13.0 112 76-207 11-123 (124)
64 PF05891 Methyltransf_PK: AdoM 99.6 2.8E-14 6E-19 108.1 13.3 122 84-221 55-194 (218)
65 PLN03075 nicotianamine synthas 99.6 2.3E-14 4.9E-19 114.5 12.8 110 83-207 122-234 (296)
66 PLN02336 phosphoethanolamine N 99.6 3.1E-14 6.7E-19 123.0 14.6 109 80-205 33-141 (475)
67 PRK13944 protein-L-isoaspartat 99.6 3.4E-14 7.5E-19 109.4 13.0 109 76-207 64-174 (205)
68 PRK14967 putative methyltransf 99.6 4.3E-14 9.4E-19 110.3 13.6 133 73-221 25-177 (223)
69 TIGR01177 conserved hypothetic 99.6 2.1E-14 4.5E-19 118.3 12.4 126 81-221 179-309 (329)
70 PF13659 Methyltransf_26: Meth 99.6 1.7E-14 3.6E-19 101.2 10.1 113 85-208 1-117 (117)
71 PLN02585 magnesium protoporphy 99.6 8.1E-14 1.8E-18 113.3 15.5 105 84-204 144-248 (315)
72 PRK06202 hypothetical protein; 99.6 4.4E-14 9.5E-19 110.9 13.4 102 83-205 59-165 (232)
73 PRK07580 Mg-protoporphyrin IX 99.6 1.1E-13 2.4E-18 108.4 15.2 102 83-203 62-163 (230)
74 TIGR03438 probable methyltrans 99.6 8.5E-14 1.8E-18 113.3 14.1 113 83-206 62-177 (301)
75 TIGR00091 tRNA (guanine-N(7)-) 99.6 3.7E-14 7.9E-19 108.3 10.9 127 83-220 15-149 (194)
76 PRK14968 putative methyltransf 99.6 2.4E-13 5.3E-18 103.1 14.6 125 83-222 22-167 (188)
77 TIGR00406 prmA ribosomal prote 99.5 1.4E-13 3.1E-18 111.2 14.0 116 82-219 157-275 (288)
78 TIGR01983 UbiG ubiquinone bios 99.5 2.6E-13 5.6E-18 105.9 14.8 106 84-207 45-150 (224)
79 COG2264 PrmA Ribosomal protein 99.5 9.2E-14 2E-18 110.7 12.0 121 82-223 160-283 (300)
80 PRK14121 tRNA (guanine-N(7)-)- 99.5 2.4E-13 5.2E-18 112.5 14.8 122 80-214 118-243 (390)
81 PRK11188 rrmJ 23S rRNA methylt 99.5 2.4E-13 5.3E-18 104.8 13.5 117 82-218 49-177 (209)
82 PRK00517 prmA ribosomal protei 99.5 1.2E-13 2.6E-18 109.6 12.0 113 82-222 117-232 (250)
83 PF07021 MetW: Methionine bios 99.5 1.3E-13 2.8E-18 102.7 11.0 108 82-215 11-118 (193)
84 TIGR02716 C20_methyl_CrtF C-20 99.5 2.1E-13 4.6E-18 111.3 13.1 108 80-205 145-253 (306)
85 TIGR03533 L3_gln_methyl protei 99.5 6.9E-13 1.5E-17 106.9 15.6 126 83-222 120-268 (284)
86 PRK04266 fibrillarin; Provisio 99.5 4.8E-13 1E-17 104.1 13.9 125 79-222 67-204 (226)
87 PRK13942 protein-L-isoaspartat 99.5 2.5E-13 5.5E-18 105.1 12.2 108 76-207 68-177 (212)
88 KOG2361 Predicted methyltransf 99.5 4E-13 8.6E-18 102.4 12.9 124 69-205 53-182 (264)
89 PF06325 PrmA: Ribosomal prote 99.5 2.1E-13 4.4E-18 109.6 12.0 116 82-222 159-277 (295)
90 PRK15001 SAM-dependent 23S rib 99.5 4.8E-13 1E-17 111.1 14.4 113 83-207 227-341 (378)
91 KOG1541 Predicted protein carb 99.5 4.6E-13 1E-17 100.7 12.8 130 73-222 37-181 (270)
92 TIGR00080 pimt protein-L-isoas 99.5 3.3E-13 7.2E-18 104.7 12.0 109 75-207 68-178 (215)
93 COG4123 Predicted O-methyltran 99.5 2.8E-13 6E-18 105.3 11.3 130 82-222 42-188 (248)
94 TIGR03534 RF_mod_PrmC protein- 99.5 1.4E-12 3.1E-17 103.4 15.6 125 83-222 86-235 (251)
95 PRK11805 N5-glutamine S-adenos 99.5 1.6E-12 3.4E-17 105.9 15.2 123 86-222 135-280 (307)
96 COG2242 CobL Precorrin-6B meth 99.5 2E-12 4.3E-17 95.7 13.7 124 76-221 26-153 (187)
97 PRK13256 thiopurine S-methyltr 99.5 1.1E-12 2.4E-17 101.5 12.4 134 67-205 26-162 (226)
98 PRK09489 rsmC 16S ribosomal RN 99.5 1.3E-12 2.8E-17 107.7 13.6 108 83-207 195-304 (342)
99 KOG3010 Methyltransferase [Gen 99.5 2E-13 4.3E-18 104.1 7.8 98 86-204 35-135 (261)
100 TIGR00536 hemK_fam HemK family 99.5 3E-12 6.6E-17 103.4 15.2 122 86-221 116-262 (284)
101 TIGR02081 metW methionine bios 99.5 1.3E-12 2.8E-17 99.9 12.1 99 83-209 12-112 (194)
102 PRK07402 precorrin-6B methylas 99.5 2.5E-12 5.4E-17 98.4 13.5 115 78-213 34-149 (196)
103 COG4976 Predicted methyltransf 99.4 8.1E-14 1.8E-18 105.3 4.4 142 34-207 85-226 (287)
104 PRK14966 unknown domain/N5-glu 99.4 4.4E-12 9.6E-17 105.7 15.1 126 83-222 250-399 (423)
105 COG2519 GCD14 tRNA(1-methylade 99.4 2.3E-12 4.9E-17 99.5 12.0 124 77-223 87-215 (256)
106 PRK09328 N5-glutamine S-adenos 99.4 7E-12 1.5E-16 100.9 15.5 127 81-222 105-256 (275)
107 PTZ00146 fibrillarin; Provisio 99.4 2.9E-12 6.2E-17 102.2 12.7 124 79-222 127-265 (293)
108 PF05148 Methyltransf_8: Hypot 99.4 1.4E-12 3E-17 98.0 9.4 147 34-222 28-179 (219)
109 cd02440 AdoMet_MTases S-adenos 99.4 5.1E-12 1.1E-16 85.6 11.4 103 87-205 1-103 (107)
110 PRK00312 pcm protein-L-isoaspa 99.4 4.9E-12 1.1E-16 98.0 12.5 106 77-207 71-176 (212)
111 PF05724 TPMT: Thiopurine S-me 99.4 3.9E-12 8.4E-17 98.5 11.2 132 66-204 19-153 (218)
112 PHA03411 putative methyltransf 99.4 8E-12 1.7E-16 98.6 13.0 120 83-222 63-208 (279)
113 PRK04457 spermidine synthase; 99.4 7.7E-12 1.7E-16 99.7 13.1 113 83-207 65-178 (262)
114 TIGR03704 PrmC_rel_meth putati 99.4 2E-11 4.3E-16 96.8 15.0 124 85-223 87-235 (251)
115 TIGR00438 rrmJ cell division p 99.4 7.3E-12 1.6E-16 95.2 11.5 108 81-209 29-149 (188)
116 PRK00811 spermidine synthase; 99.4 1E-11 2.2E-16 100.2 12.2 117 83-207 75-192 (283)
117 smart00650 rADc Ribosomal RNA 99.4 8.7E-12 1.9E-16 93.2 11.0 109 76-206 5-113 (169)
118 COG2518 Pcm Protein-L-isoaspar 99.4 1.3E-11 2.8E-16 93.3 11.7 110 73-207 61-170 (209)
119 PRK01544 bifunctional N5-gluta 99.3 1.6E-11 3.5E-16 106.3 13.0 124 85-222 139-287 (506)
120 PF08704 GCD14: tRNA methyltra 99.3 1.6E-11 3.5E-16 96.2 11.4 129 76-223 32-166 (247)
121 PRK11783 rlmL 23S rRNA m(2)G24 99.3 1.7E-11 3.7E-16 110.2 12.5 127 83-221 537-673 (702)
122 KOG1499 Protein arginine N-met 99.3 8.9E-12 1.9E-16 100.3 9.4 121 69-204 45-165 (346)
123 PF01135 PCMT: Protein-L-isoas 99.3 1.3E-11 2.8E-16 94.8 9.7 111 73-207 61-173 (209)
124 PRK13943 protein-L-isoaspartat 99.3 2.4E-11 5.1E-16 99.2 11.7 107 76-206 72-180 (322)
125 KOG3045 Predicted RNA methylas 99.3 2.1E-11 4.5E-16 93.9 10.4 104 83-224 179-287 (325)
126 PRK10901 16S rRNA methyltransf 99.3 8.4E-11 1.8E-15 100.2 14.7 114 80-207 240-373 (427)
127 COG2890 HemK Methylase of poly 99.3 1.7E-10 3.7E-15 92.7 15.1 119 87-221 113-255 (280)
128 PRK14901 16S rRNA methyltransf 99.3 5.6E-11 1.2E-15 101.5 13.0 130 80-219 248-403 (434)
129 PRK15128 23S rRNA m(5)C1962 me 99.3 6.5E-11 1.4E-15 99.4 12.3 116 83-207 219-340 (396)
130 PLN02781 Probable caffeoyl-CoA 99.3 8.2E-11 1.8E-15 92.3 11.7 109 82-205 66-177 (234)
131 PRK14904 16S rRNA methyltransf 99.3 8E-11 1.7E-15 100.8 12.6 111 81-207 247-378 (445)
132 PLN02232 ubiquinone biosynthes 99.3 2E-11 4.4E-16 90.3 7.3 80 111-205 1-80 (160)
133 TIGR00446 nop2p NOL1/NOP2/sun 99.2 5.2E-11 1.1E-15 95.2 9.9 113 81-207 68-200 (264)
134 TIGR00563 rsmB ribosomal RNA s 99.2 1.8E-10 3.8E-15 98.3 13.6 117 80-207 234-369 (426)
135 KOG2940 Predicted methyltransf 99.2 2.4E-11 5.2E-16 92.1 7.3 108 83-210 71-178 (325)
136 PRK14903 16S rRNA methyltransf 99.2 1.8E-10 3.9E-15 98.1 13.5 115 80-207 233-367 (431)
137 PF01739 CheR: CheR methyltran 99.2 7.7E-11 1.7E-15 89.6 9.6 117 84-207 31-176 (196)
138 PRK01581 speE spermidine synth 99.2 2.5E-10 5.5E-15 93.5 13.1 134 82-221 148-290 (374)
139 PF02390 Methyltransf_4: Putat 99.2 2E-10 4.3E-15 87.6 11.7 124 84-218 17-148 (195)
140 COG2813 RsmC 16S RNA G1207 met 99.2 1.9E-10 4.1E-15 91.5 11.9 114 77-206 151-266 (300)
141 KOG2899 Predicted methyltransf 99.2 1.8E-10 3.9E-15 88.1 10.9 127 82-208 56-211 (288)
142 PRK03612 spermidine synthase; 99.2 7.9E-11 1.7E-15 102.5 10.3 132 83-221 296-437 (521)
143 TIGR00417 speE spermidine synt 99.2 2.8E-10 6E-15 91.3 12.1 115 83-208 71-188 (270)
144 PRK14902 16S rRNA methyltransf 99.2 2.3E-10 5E-15 98.1 11.4 114 81-207 247-380 (444)
145 PF05219 DREV: DREV methyltran 99.2 2.5E-10 5.4E-15 88.8 10.2 94 84-205 94-187 (265)
146 PRK13168 rumA 23S rRNA m(5)U19 99.2 3.4E-10 7.5E-15 96.9 12.2 126 76-221 289-417 (443)
147 PRK10909 rsmD 16S rRNA m(2)G96 99.2 7.3E-10 1.6E-14 84.6 12.5 108 83-208 52-161 (199)
148 PLN02366 spermidine synthase 99.2 3.5E-10 7.6E-15 91.9 11.4 116 83-206 90-206 (308)
149 COG1041 Predicted DNA modifica 99.2 4.5E-10 9.8E-15 90.9 11.8 144 61-221 173-323 (347)
150 PF06080 DUF938: Protein of un 99.2 5.3E-10 1.2E-14 84.5 11.5 109 87-205 28-140 (204)
151 PHA03412 putative methyltransf 99.2 2.4E-10 5.1E-15 88.4 9.8 117 60-201 30-158 (241)
152 COG2263 Predicted RNA methylas 99.2 2.7E-10 5.9E-15 84.2 9.3 118 81-221 42-161 (198)
153 PF00891 Methyltransf_2: O-met 99.2 6E-10 1.3E-14 88.0 11.6 99 81-205 97-198 (241)
154 PRK10611 chemotaxis methyltran 99.1 4E-10 8.6E-15 90.4 10.1 118 84-207 115-263 (287)
155 PF01596 Methyltransf_3: O-met 99.1 6.3E-10 1.4E-14 85.3 10.3 109 82-205 43-154 (205)
156 PLN02672 methionine S-methyltr 99.1 1.1E-09 2.3E-14 101.2 13.6 134 85-222 119-297 (1082)
157 KOG1500 Protein arginine N-met 99.1 7.9E-10 1.7E-14 88.4 10.8 113 76-205 169-281 (517)
158 PF01234 NNMT_PNMT_TEMT: NNMT/ 99.1 2.2E-10 4.8E-15 90.1 7.6 138 84-222 56-233 (256)
159 PRK03522 rumB 23S rRNA methylu 99.1 1.3E-09 2.7E-14 89.5 11.7 103 83-206 172-274 (315)
160 PF10294 Methyltransf_16: Puta 99.1 7.5E-10 1.6E-14 83.0 9.5 115 81-207 42-157 (173)
161 PLN02476 O-methyltransferase 99.1 2.8E-09 6.2E-14 84.9 12.5 109 82-205 116-227 (278)
162 COG4122 Predicted O-methyltran 99.1 2.1E-09 4.5E-14 82.6 11.0 107 81-205 56-165 (219)
163 PF05185 PRMT5: PRMT5 arginine 99.1 2.2E-09 4.7E-14 91.5 11.8 103 85-203 187-294 (448)
164 COG3963 Phospholipid N-methylt 99.1 2.2E-09 4.8E-14 77.6 10.0 116 76-207 40-157 (194)
165 COG1352 CheR Methylase of chem 99.1 5.3E-09 1.2E-13 83.0 12.9 116 84-206 96-241 (268)
166 PF01170 UPF0020: Putative RNA 99.0 4.3E-09 9.2E-14 79.3 11.4 139 67-220 10-163 (179)
167 KOG2904 Predicted methyltransf 99.0 1.1E-08 2.4E-13 79.7 13.4 129 71-207 132-286 (328)
168 PF12147 Methyltransf_20: Puta 99.0 2.3E-08 4.9E-13 79.0 14.5 112 83-206 134-249 (311)
169 COG1092 Predicted SAM-dependen 99.0 3.3E-09 7.1E-14 88.3 10.1 116 84-208 217-338 (393)
170 PRK14896 ksgA 16S ribosomal RN 99.0 4.6E-09 9.9E-14 83.8 10.0 87 71-176 16-102 (258)
171 COG0220 Predicted S-adenosylme 99.0 5.6E-09 1.2E-13 81.1 10.2 118 86-214 50-172 (227)
172 PRK00274 ksgA 16S ribosomal RN 99.0 3E-09 6.5E-14 85.4 9.0 84 73-174 31-114 (272)
173 TIGR02085 meth_trns_rumB 23S r 99.0 9.6E-09 2.1E-13 86.1 12.2 112 83-216 232-343 (374)
174 TIGR00095 RNA methyltransferas 99.0 1.6E-08 3.4E-13 76.8 12.3 112 83-208 48-161 (189)
175 TIGR00479 rumA 23S rRNA (uraci 99.0 7.8E-09 1.7E-13 88.4 11.8 122 81-221 289-413 (431)
176 PLN02589 caffeoyl-CoA O-methyl 99.0 1.2E-08 2.7E-13 80.2 11.5 108 83-205 78-189 (247)
177 PF10672 Methyltrans_SAM: S-ad 99.0 7.3E-09 1.6E-13 83.0 10.3 126 83-218 122-254 (286)
178 TIGR00478 tly hemolysin TlyA f 99.0 1.3E-08 2.8E-13 79.2 11.4 99 83-208 74-174 (228)
179 PTZ00338 dimethyladenosine tra 98.9 7.3E-09 1.6E-13 83.8 10.0 89 72-176 24-112 (294)
180 PRK11727 23S rRNA mA1618 methy 98.9 2.9E-08 6.4E-13 80.9 13.5 84 84-176 114-200 (321)
181 PF03602 Cons_hypoth95: Conser 98.9 1.5E-08 3.3E-13 76.4 10.1 114 83-209 41-156 (183)
182 TIGR00755 ksgA dimethyladenosi 98.9 3.9E-08 8.5E-13 78.2 12.7 85 72-175 17-104 (253)
183 KOG1331 Predicted methyltransf 98.8 6.3E-09 1.4E-13 81.7 6.0 99 83-205 44-142 (293)
184 KOG3178 Hydroxyindole-O-methyl 98.8 2.4E-08 5.1E-13 80.9 8.9 95 86-205 179-274 (342)
185 KOG3191 Predicted N6-DNA-methy 98.8 2.4E-07 5.2E-12 68.2 13.2 123 84-222 43-187 (209)
186 PLN02823 spermine synthase 98.8 5E-08 1.1E-12 80.2 10.8 115 83-206 102-220 (336)
187 TIGR03439 methyl_EasF probable 98.8 5E-07 1.1E-11 73.7 15.1 114 82-206 74-197 (319)
188 PRK04148 hypothetical protein; 98.8 3.2E-07 7E-12 65.0 11.8 93 83-205 15-108 (134)
189 COG0421 SpeE Spermidine syntha 98.7 1.1E-07 2.4E-12 76.2 10.4 112 85-207 77-191 (282)
190 PF08123 DOT1: Histone methyla 98.7 4.3E-08 9.3E-13 75.1 7.4 126 71-204 29-156 (205)
191 KOG3420 Predicted RNA methylas 98.7 1.8E-08 3.9E-13 71.3 4.5 79 83-176 47-125 (185)
192 PF03141 Methyltransf_29: Puta 98.7 2.3E-08 4.9E-13 84.4 5.9 119 69-209 98-222 (506)
193 PF07942 N2227: N2227-like pro 98.7 2.2E-06 4.7E-11 68.1 16.5 132 84-222 56-236 (270)
194 PF02384 N6_Mtase: N-6 DNA Met 98.7 1.4E-07 3.1E-12 77.3 10.1 145 62-220 27-205 (311)
195 PF02475 Met_10: Met-10+ like- 98.7 1.6E-07 3.5E-12 71.6 9.4 100 82-203 99-199 (200)
196 COG2521 Predicted archaeal met 98.7 1.1E-07 2.3E-12 72.8 8.2 129 82-222 132-271 (287)
197 PF02527 GidB: rRNA small subu 98.7 1.7E-07 3.6E-12 70.7 8.9 97 87-206 51-148 (184)
198 PF11968 DUF3321: Putative met 98.7 3.3E-07 7.1E-12 69.7 10.4 128 66-222 32-175 (219)
199 PF01564 Spermine_synth: Sperm 98.7 1.5E-07 3.2E-12 74.4 8.9 115 83-206 75-191 (246)
200 PRK11933 yebU rRNA (cytosine-C 98.7 3.6E-07 7.7E-12 78.4 11.7 114 81-208 110-244 (470)
201 KOG0820 Ribosomal RNA adenine 98.6 1.8E-07 4E-12 73.0 8.6 86 73-174 47-132 (315)
202 PRK01544 bifunctional N5-gluta 98.6 3.1E-07 6.7E-12 79.9 10.5 125 84-220 347-479 (506)
203 PRK00050 16S rRNA m(4)C1402 me 98.6 1.9E-07 4.1E-12 75.3 7.8 89 73-173 8-98 (296)
204 PRK05031 tRNA (uracil-5-)-meth 98.6 1.1E-06 2.3E-11 73.6 12.6 111 85-216 207-329 (362)
205 PRK11783 rlmL 23S rRNA m(2)G24 98.6 1.2E-06 2.7E-11 79.1 13.8 117 83-210 189-351 (702)
206 COG0116 Predicted N6-adenine-s 98.6 1.8E-06 3.9E-11 71.2 13.5 127 81-220 188-358 (381)
207 PRK04338 N(2),N(2)-dimethylgua 98.6 4.7E-07 1E-11 75.9 10.4 105 85-211 58-163 (382)
208 PF01728 FtsJ: FtsJ-like methy 98.6 3.7E-07 8E-12 68.9 8.9 104 84-207 23-140 (181)
209 KOG1661 Protein-L-isoaspartate 98.6 2.8E-07 6E-12 69.4 7.9 109 82-205 80-192 (237)
210 TIGR02143 trmA_only tRNA (urac 98.6 9.6E-07 2.1E-11 73.5 12.0 112 85-217 198-321 (353)
211 PF09243 Rsm22: Mitochondrial 98.6 1E-06 2.2E-11 70.8 11.7 108 83-208 32-141 (274)
212 COG0030 KsgA Dimethyladenosine 98.6 8.5E-07 1.8E-11 69.9 10.7 89 71-175 17-105 (259)
213 COG0742 N6-adenine-specific me 98.5 1.7E-06 3.8E-11 64.7 11.2 114 83-209 42-157 (187)
214 PRK00536 speE spermidine synth 98.5 1.4E-06 3.1E-11 69.1 11.1 101 83-206 71-171 (262)
215 KOG2915 tRNA(1-methyladenosine 98.5 2.3E-06 5E-11 66.9 11.8 129 74-222 95-229 (314)
216 COG0357 GidB Predicted S-adeno 98.5 8E-07 1.7E-11 68.2 9.1 97 85-204 68-166 (215)
217 COG2265 TrmA SAM-dependent met 98.5 1.4E-06 3.1E-11 74.0 11.1 120 77-216 286-405 (432)
218 PF04816 DUF633: Family of unk 98.5 3E-06 6.5E-11 65.0 11.1 116 88-222 1-118 (205)
219 PF09445 Methyltransf_15: RNA 98.5 3.4E-07 7.4E-12 67.3 5.5 76 86-172 1-76 (163)
220 TIGR02987 met_A_Alw26 type II 98.4 3.5E-06 7.6E-11 74.0 11.9 102 64-174 7-121 (524)
221 COG2520 Predicted methyltransf 98.4 2.1E-06 4.6E-11 70.3 9.7 102 83-205 187-288 (341)
222 KOG1663 O-methyltransferase [S 98.4 7.2E-06 1.6E-10 62.8 11.5 109 82-205 71-182 (237)
223 PF00398 RrnaAD: Ribosomal RNA 98.4 2.6E-05 5.7E-10 62.4 15.3 106 72-198 18-123 (262)
224 KOG2730 Methylase [General fun 98.4 1.7E-06 3.8E-11 65.6 7.6 128 34-173 46-173 (263)
225 KOG1709 Guanidinoacetate methy 98.4 8.7E-06 1.9E-10 61.7 11.1 120 68-205 86-205 (271)
226 KOG1269 SAM-dependent methyltr 98.3 1.1E-06 2.3E-11 72.9 6.0 107 82-205 108-214 (364)
227 TIGR00308 TRM1 tRNA(guanine-26 98.3 2.3E-06 4.9E-11 71.6 8.0 100 86-206 46-147 (374)
228 KOG3987 Uncharacterized conser 98.3 1.5E-07 3.2E-12 70.7 0.6 94 84-205 112-206 (288)
229 KOG2352 Predicted spermine/spe 98.3 1.4E-05 2.9E-10 67.7 12.1 124 67-205 29-160 (482)
230 COG0293 FtsJ 23S rRNA methylas 98.3 8.8E-06 1.9E-10 61.8 9.7 116 82-218 43-174 (205)
231 COG0500 SmtA SAM-dependent met 98.3 1.5E-05 3.3E-10 57.7 11.0 100 88-208 52-157 (257)
232 PF13679 Methyltransf_32: Meth 98.3 1.6E-05 3.4E-10 57.5 10.5 97 68-176 8-110 (141)
233 PF05958 tRNA_U5-meth_tr: tRNA 98.3 1.2E-05 2.6E-10 67.0 11.0 59 86-154 198-256 (352)
234 COG4076 Predicted RNA methylas 98.2 5.2E-06 1.1E-10 61.6 7.3 100 85-203 33-132 (252)
235 COG0144 Sun tRNA and rRNA cyto 98.2 3.4E-05 7.3E-10 64.3 12.9 129 80-219 152-307 (355)
236 COG1189 Predicted rRNA methyla 98.2 1.4E-05 3E-10 61.7 9.6 115 83-221 78-194 (245)
237 COG3897 Predicted methyltransf 98.1 2.3E-05 5E-10 58.6 8.1 103 83-208 78-181 (218)
238 PF03059 NAS: Nicotianamine sy 98.1 7.2E-05 1.6E-09 59.8 11.2 109 85-208 121-232 (276)
239 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.0 8.7E-05 1.9E-09 60.0 10.5 116 80-207 81-220 (283)
240 COG2384 Predicted SAM-dependen 98.0 0.00053 1.1E-08 52.5 13.5 121 83-222 15-137 (226)
241 PF01269 Fibrillarin: Fibrilla 98.0 0.00015 3.2E-09 55.7 10.6 102 80-205 69-177 (229)
242 PRK11760 putative 23S rRNA C24 97.9 5E-05 1.1E-09 62.0 8.2 88 82-199 209-296 (357)
243 PF13578 Methyltransf_24: Meth 97.9 1.6E-05 3.4E-10 54.5 3.8 100 89-205 1-104 (106)
244 PF05971 Methyltransf_10: Prot 97.8 0.00032 6.9E-09 56.7 11.3 137 34-177 49-189 (299)
245 TIGR00006 S-adenosyl-methyltra 97.8 0.00015 3.2E-09 58.8 8.0 90 73-172 9-99 (305)
246 PF04672 Methyltransf_19: S-ad 97.7 0.0005 1.1E-08 54.5 10.7 128 69-207 52-191 (267)
247 KOG3201 Uncharacterized conser 97.7 4.1E-05 9E-10 55.5 4.1 115 82-209 27-143 (201)
248 COG4262 Predicted spermidine s 97.7 0.00042 9.2E-09 56.8 10.1 133 83-221 288-429 (508)
249 TIGR01444 fkbM_fam methyltrans 97.7 0.00012 2.6E-09 52.8 5.9 42 87-128 1-43 (143)
250 PF07091 FmrO: Ribosomal RNA m 97.7 0.00017 3.6E-09 56.4 6.8 80 83-178 104-184 (251)
251 PF06962 rRNA_methylase: Putat 97.6 0.00064 1.4E-08 48.6 8.5 86 109-207 1-93 (140)
252 KOG2187 tRNA uracil-5-methyltr 97.6 0.0001 2.3E-09 62.7 5.3 65 80-154 379-443 (534)
253 KOG2798 Putative trehalase [Ca 97.6 0.0008 1.7E-08 54.1 9.6 114 84-204 150-294 (369)
254 COG0286 HsdM Type I restrictio 97.6 0.00086 1.9E-08 58.4 10.5 147 61-218 166-346 (489)
255 COG5459 Predicted rRNA methyla 97.5 0.00061 1.3E-08 55.6 8.3 113 84-208 113-227 (484)
256 COG4627 Uncharacterized protei 97.5 5.3E-05 1.1E-09 54.5 1.5 49 162-212 44-92 (185)
257 cd00315 Cyt_C5_DNA_methylase C 97.5 0.0027 5.8E-08 51.2 11.5 118 87-222 2-137 (275)
258 PF01861 DUF43: Protein of unk 97.5 0.015 3.2E-07 45.5 14.9 120 83-222 43-172 (243)
259 PLN02668 indole-3-acetate carb 97.4 0.0041 9E-08 52.2 12.0 118 84-206 63-237 (386)
260 PF03492 Methyltransf_7: SAM d 97.4 0.0026 5.7E-08 52.7 10.6 119 82-207 14-184 (334)
261 PF04989 CmcI: Cephalosporin h 97.4 0.0015 3.3E-08 49.8 8.3 109 82-205 30-146 (206)
262 KOG2793 Putative N2,N2-dimethy 97.4 0.0015 3.2E-08 51.4 8.5 114 84-207 86-200 (248)
263 KOG4589 Cell division protein 97.3 0.0013 2.8E-08 49.1 7.1 106 82-208 67-186 (232)
264 KOG1122 tRNA and rRNA cytosine 97.3 0.0021 4.6E-08 53.7 9.0 116 80-207 237-372 (460)
265 KOG4058 Uncharacterized conser 97.3 0.0026 5.7E-08 45.6 8.2 113 71-205 59-171 (199)
266 KOG3115 Methyltransferase-like 97.3 0.0023 5E-08 48.4 8.2 120 84-207 60-184 (249)
267 PF01795 Methyltransf_5: MraW 97.3 0.0019 4.1E-08 52.5 8.4 90 73-172 9-100 (310)
268 COG1889 NOP1 Fibrillarin-like 97.3 0.0095 2.1E-07 45.1 11.4 106 80-205 72-179 (231)
269 PRK10742 putative methyltransf 97.2 0.0018 3.9E-08 50.9 7.0 94 77-176 79-175 (250)
270 KOG2198 tRNA cytosine-5-methyl 97.1 0.011 2.4E-07 48.8 11.6 120 80-208 151-298 (375)
271 COG4301 Uncharacterized conser 97.1 0.015 3.3E-07 45.4 11.4 113 82-207 76-194 (321)
272 COG0275 Predicted S-adenosylme 97.1 0.0039 8.5E-08 50.1 8.4 90 72-171 11-102 (314)
273 PF03141 Methyltransf_29: Puta 97.0 0.0013 2.9E-08 56.2 5.7 99 84-205 365-466 (506)
274 PF06859 Bin3: Bicoid-interact 96.7 0.0011 2.4E-08 45.1 2.3 43 165-207 1-45 (110)
275 COG1064 AdhP Zn-dependent alco 96.7 0.013 2.8E-07 48.3 8.8 95 81-205 163-258 (339)
276 COG4798 Predicted methyltransf 96.6 0.025 5.3E-07 42.7 8.9 112 81-205 45-165 (238)
277 KOG2920 Predicted methyltransf 96.6 0.0013 2.9E-08 52.2 2.4 113 82-205 114-233 (282)
278 COG3129 Predicted SAM-dependen 96.6 0.013 2.9E-07 45.3 7.3 129 42-177 33-165 (292)
279 PF02005 TRM: N2,N2-dimethylgu 96.5 0.019 4.2E-07 48.3 8.6 105 84-208 49-156 (377)
280 PF11599 AviRa: RRNA methyltra 96.5 0.0048 1E-07 47.1 4.4 142 65-206 32-214 (246)
281 TIGR00027 mthyl_TIGR00027 meth 96.4 0.056 1.2E-06 43.2 10.7 115 84-208 81-199 (260)
282 KOG1562 Spermidine synthase [A 96.4 0.026 5.7E-07 45.3 8.4 118 83-208 120-238 (337)
283 KOG1501 Arginine N-methyltrans 96.4 0.006 1.3E-07 51.4 5.0 61 87-155 69-129 (636)
284 PRK11524 putative methyltransf 96.4 0.013 2.8E-07 47.5 6.7 47 81-128 205-251 (284)
285 TIGR00675 dcm DNA-methyltransf 96.4 0.04 8.6E-07 45.4 9.7 116 88-222 1-134 (315)
286 PF01555 N6_N4_Mtase: DNA meth 96.3 0.015 3.3E-07 45.0 6.7 45 80-125 187-231 (231)
287 PHA01634 hypothetical protein 96.3 0.012 2.6E-07 41.2 5.1 45 84-128 28-72 (156)
288 PF00145 DNA_methylase: C-5 cy 96.3 0.028 6.1E-07 46.1 8.4 116 87-221 2-135 (335)
289 PF07757 AdoMet_MTase: Predict 96.2 0.013 2.9E-07 39.7 4.7 47 70-117 43-90 (112)
290 KOG3924 Putative protein methy 96.0 0.021 4.5E-07 47.6 6.1 127 69-205 177-307 (419)
291 KOG1596 Fibrillarin and relate 96.0 0.045 9.8E-07 42.7 7.4 104 78-206 150-261 (317)
292 PRK01747 mnmC bifunctional tRN 95.9 0.066 1.4E-06 48.7 9.7 132 84-222 57-221 (662)
293 PRK13699 putative methylase; P 95.9 0.032 6.9E-07 43.7 6.6 47 81-128 160-206 (227)
294 KOG2539 Mitochondrial/chloropl 95.9 0.066 1.4E-06 45.7 8.7 111 83-205 199-314 (491)
295 cd08283 FDH_like_1 Glutathione 95.8 0.072 1.6E-06 45.0 9.0 111 81-205 181-305 (386)
296 PF02636 Methyltransf_28: Puta 95.8 0.028 6.1E-07 44.7 6.0 59 71-129 4-72 (252)
297 COG0270 Dcm Site-specific DNA 95.7 0.15 3.1E-06 42.3 10.1 121 85-222 3-141 (328)
298 COG1565 Uncharacterized conser 95.7 0.062 1.3E-06 44.5 7.7 61 70-130 63-132 (370)
299 KOG1099 SAM-dependent methyltr 95.6 0.026 5.7E-07 43.6 4.8 103 85-207 42-164 (294)
300 PRK09424 pntA NAD(P) transhydr 95.5 0.12 2.6E-06 45.3 9.4 103 83-205 163-284 (509)
301 KOG0822 Protein kinase inhibit 95.4 0.046 9.9E-07 47.3 6.2 102 86-204 369-476 (649)
302 PRK13699 putative methylase; P 95.3 0.072 1.6E-06 41.7 6.8 76 144-222 2-90 (227)
303 COG3510 CmcI Cephalosporin hyd 95.2 0.38 8.2E-06 36.4 9.8 105 83-205 68-179 (237)
304 PF03269 DUF268: Caenorhabditi 95.2 0.021 4.5E-07 41.7 3.0 45 163-207 61-112 (177)
305 PF05711 TylF: Macrocin-O-meth 94.9 1.2 2.6E-05 35.3 12.4 111 83-209 73-215 (248)
306 PRK09880 L-idonate 5-dehydroge 94.9 0.21 4.6E-06 41.4 8.7 96 83-205 168-265 (343)
307 PF04445 SAM_MT: Putative SAM- 94.9 0.031 6.7E-07 43.7 3.4 86 86-177 77-163 (234)
308 COG1063 Tdh Threonine dehydrog 94.8 0.42 9E-06 40.0 10.2 98 84-205 168-268 (350)
309 KOG0024 Sorbitol dehydrogenase 94.7 0.35 7.5E-06 39.6 9.0 100 81-205 166-272 (354)
310 KOG2671 Putative RNA methylase 94.7 0.031 6.7E-07 45.8 3.0 114 81-207 205-355 (421)
311 PF02254 TrkA_N: TrkA-N domain 94.6 0.91 2E-05 31.0 10.5 104 93-221 4-110 (116)
312 COG1867 TRM1 N2,N2-dimethylgua 94.6 0.14 2.9E-06 42.6 6.5 100 85-205 53-153 (380)
313 PF11312 DUF3115: Protein of u 94.4 0.074 1.6E-06 43.2 4.7 120 86-205 88-241 (315)
314 PRK10458 DNA cytosine methylas 94.3 0.98 2.1E-05 39.3 11.5 43 85-127 88-130 (467)
315 TIGR00561 pntA NAD(P) transhyd 94.1 0.19 4.1E-06 44.0 6.8 100 84-203 163-281 (511)
316 PTZ00357 methyltransferase; Pr 93.7 0.26 5.6E-06 44.4 6.9 86 86-171 702-798 (1072)
317 PF03514 GRAS: GRAS domain fam 93.7 0.94 2E-05 38.3 10.1 137 76-218 102-259 (374)
318 PRK11524 putative methyltransf 93.7 0.24 5.2E-06 40.1 6.4 75 144-221 9-96 (284)
319 PF00107 ADH_zinc_N: Zinc-bind 93.5 0.29 6.3E-06 34.2 6.0 85 95-205 2-88 (130)
320 KOG1253 tRNA methyltransferase 93.5 0.056 1.2E-06 46.4 2.5 109 83-208 108-218 (525)
321 KOG2651 rRNA adenine N-6-methy 93.2 0.33 7.2E-06 40.5 6.4 43 84-126 153-195 (476)
322 COG0686 Ald Alanine dehydrogen 93.1 0.35 7.6E-06 39.4 6.2 97 85-203 168-265 (371)
323 cd08254 hydroxyacyl_CoA_DH 6-h 92.8 1.3 2.8E-05 36.2 9.6 98 82-205 163-262 (338)
324 PF11899 DUF3419: Protein of u 92.6 0.34 7.3E-06 40.9 5.9 59 142-205 275-333 (380)
325 COG3315 O-Methyltransferase in 92.6 3.2 7E-05 33.9 11.4 117 85-210 93-213 (297)
326 KOG0821 Predicted ribosomal RN 91.7 1.8 4E-05 33.6 8.3 62 84-155 50-111 (326)
327 TIGR02822 adh_fam_2 zinc-bindi 91.5 3.2 7E-05 34.2 10.5 91 81-205 162-253 (329)
328 PF05206 TRM13: Methyltransfer 91.5 3.2 6.9E-05 33.2 9.9 109 82-205 16-139 (259)
329 cd05188 MDR Medium chain reduc 91.2 2 4.3E-05 33.7 8.8 98 83-205 133-231 (271)
330 cd08230 glucose_DH Glucose deh 91.1 1.5 3.2E-05 36.5 8.3 94 83-205 171-268 (355)
331 PF05430 Methyltransf_30: S-ad 91.1 0.19 4.1E-06 35.4 2.4 69 144-222 33-105 (124)
332 cd08232 idonate-5-DH L-idonate 90.9 1.4 3E-05 36.2 7.8 92 84-205 165-261 (339)
333 cd08237 ribitol-5-phosphate_DH 90.7 1.7 3.7E-05 36.0 8.1 92 82-205 161-255 (341)
334 cd08281 liver_ADH_like1 Zinc-d 90.5 2.3 5E-05 35.6 8.9 45 82-126 189-235 (371)
335 PF02737 3HCDH_N: 3-hydroxyacy 90.0 2.5 5.3E-05 31.8 7.8 106 88-208 2-116 (180)
336 TIGR03366 HpnZ_proposed putati 89.9 2.8 6.1E-05 33.6 8.6 96 83-205 119-217 (280)
337 KOG1227 Putative methyltransfe 89.5 0.41 8.9E-06 38.7 3.3 74 84-171 194-268 (351)
338 PRK03659 glutathione-regulated 89.3 5.3 0.00012 36.1 10.6 108 86-220 401-511 (601)
339 TIGR03451 mycoS_dep_FDH mycoth 89.2 2.2 4.7E-05 35.6 7.7 46 81-126 173-220 (358)
340 PF04072 LCM: Leucine carboxyl 89.2 2.5 5.4E-05 31.7 7.3 98 86-192 80-182 (183)
341 PF12692 Methyltransf_17: S-ad 89.0 1.1 2.4E-05 32.4 4.8 100 85-206 29-134 (160)
342 PRK03562 glutathione-regulated 88.9 7.8 0.00017 35.2 11.4 111 85-220 400-511 (621)
343 TIGR00497 hsdM type I restrict 88.7 6.4 0.00014 34.7 10.5 64 63-127 197-265 (501)
344 PRK10669 putative cation:proto 87.8 11 0.00023 33.8 11.4 108 86-220 418-528 (558)
345 cd08239 THR_DH_like L-threonin 87.6 5.6 0.00012 32.7 9.1 46 81-126 160-207 (339)
346 KOG2078 tRNA modification enzy 87.1 0.55 1.2E-05 39.9 2.7 48 82-130 247-294 (495)
347 COG1255 Uncharacterized protei 87.1 5.8 0.00013 27.4 7.1 87 84-201 13-99 (129)
348 COG1568 Predicted methyltransf 86.8 6.2 0.00013 31.9 8.2 121 83-222 151-282 (354)
349 TIGR02825 B4_12hDH leukotriene 86.5 9.6 0.00021 31.1 9.9 99 81-205 135-236 (325)
350 TIGR01202 bchC 2-desacetyl-2-h 86.4 4.1 8.8E-05 33.2 7.6 85 84-205 144-230 (308)
351 cd00401 AdoHcyase S-adenosyl-L 86.4 4.4 9.5E-05 34.8 7.8 87 83-205 200-288 (413)
352 PLN02740 Alcohol dehydrogenase 86.1 7 0.00015 32.9 9.0 46 81-126 195-242 (381)
353 COG2933 Predicted SAM-dependen 86.1 5 0.00011 32.1 7.3 72 81-174 208-279 (358)
354 PLN03154 putative allyl alcoho 85.8 9.2 0.0002 31.8 9.5 100 81-205 155-257 (348)
355 PF11899 DUF3419: Protein of u 85.6 2.3 4.9E-05 36.1 5.7 49 78-127 29-77 (380)
356 COG0604 Qor NADPH:quinone redu 85.5 5.1 0.00011 33.2 7.7 100 81-205 139-240 (326)
357 PRK09496 trkA potassium transp 85.5 13 0.00029 31.9 10.7 95 87-207 2-100 (453)
358 cd08294 leukotriene_B4_DH_like 84.7 11 0.00024 30.6 9.4 95 82-204 141-239 (329)
359 cd08234 threonine_DH_like L-th 84.7 8.4 0.00018 31.4 8.7 99 81-205 156-256 (334)
360 KOG2352 Predicted spermine/spe 84.2 1.9 4.1E-05 37.3 4.6 113 84-205 295-415 (482)
361 PF02826 2-Hacid_dh_C: D-isome 83.7 2.5 5.5E-05 31.5 4.8 105 84-219 35-144 (178)
362 PRK07417 arogenate dehydrogena 83.7 19 0.00041 29.0 10.1 85 87-203 2-88 (279)
363 PRK10309 galactitol-1-phosphat 83.4 9.5 0.00021 31.5 8.5 44 82-125 158-203 (347)
364 cd08245 CAD Cinnamyl alcohol d 83.2 19 0.00042 29.3 10.3 96 81-205 159-255 (330)
365 PF07279 DUF1442: Protein of u 83.1 20 0.00043 27.8 10.7 80 83-174 40-124 (218)
366 PF02153 PDH: Prephenate dehyd 82.8 16 0.00034 29.1 9.2 87 100-217 3-90 (258)
367 PF03686 UPF0146: Uncharacteri 82.7 7.9 0.00017 27.3 6.4 91 83-206 12-102 (127)
368 PLN02586 probable cinnamyl alc 82.5 11 0.00024 31.5 8.6 39 83-121 182-221 (360)
369 PRK07502 cyclohexadienyl dehyd 82.1 21 0.00046 29.1 10.0 89 86-204 7-98 (307)
370 COG5379 BtaA S-adenosylmethion 81.9 3.8 8.2E-05 33.3 5.2 76 112-206 291-366 (414)
371 TIGR00518 alaDH alanine dehydr 81.7 3.1 6.6E-05 35.2 5.0 44 84-127 166-210 (370)
372 KOG2912 Predicted DNA methylas 81.6 6.7 0.00014 32.3 6.5 99 69-175 85-188 (419)
373 cd08255 2-desacetyl-2-hydroxye 81.5 15 0.00033 29.0 8.8 46 81-126 94-141 (277)
374 COG0863 DNA modification methy 81.1 6.6 0.00014 31.7 6.7 53 74-128 213-265 (302)
375 cd08261 Zn_ADH7 Alcohol dehydr 81.0 8.1 0.00018 31.7 7.3 101 81-205 156-257 (337)
376 PLN02827 Alcohol dehydrogenase 80.5 15 0.00033 30.9 8.9 45 82-126 191-237 (378)
377 PF06460 NSP13: Coronavirus NS 80.2 25 0.00055 28.2 9.1 101 81-209 58-172 (299)
378 COG1748 LYS9 Saccharopine dehy 79.5 8.1 0.00018 32.8 6.7 73 86-174 2-77 (389)
379 cd08293 PTGR2 Prostaglandin re 79.5 22 0.00047 29.2 9.3 94 86-204 156-252 (345)
380 PF14740 DUF4471: Domain of un 79.2 4 8.6E-05 33.2 4.6 52 163-223 220-284 (289)
381 PF05050 Methyltransf_21: Meth 79.2 4 8.7E-05 29.5 4.4 37 90-126 1-42 (167)
382 cd05278 FDH_like Formaldehyde 79.2 10 0.00023 31.1 7.4 99 82-204 165-265 (347)
383 PRK07819 3-hydroxybutyryl-CoA 78.8 16 0.00035 29.6 8.2 105 86-207 6-122 (286)
384 cd05285 sorbitol_DH Sorbitol d 78.7 25 0.00054 28.9 9.5 99 81-205 159-264 (343)
385 PRK13243 glyoxylate reductase; 77.9 16 0.00034 30.4 8.0 103 84-219 149-257 (333)
386 PRK09496 trkA potassium transp 77.7 43 0.00093 28.8 10.9 72 84-172 230-304 (453)
387 PRK12480 D-lactate dehydrogena 77.6 29 0.00062 28.8 9.4 102 84-219 145-251 (330)
388 KOG1098 Putative SAM-dependent 76.3 4.2 9.1E-05 36.4 4.2 36 82-117 42-79 (780)
389 TIGR02441 fa_ox_alpha_mit fatt 75.9 17 0.00036 33.8 8.2 115 86-216 336-462 (737)
390 PRK07066 3-hydroxybutyryl-CoA 75.7 12 0.00027 30.9 6.7 106 86-207 8-120 (321)
391 PLN02494 adenosylhomocysteinas 75.6 15 0.00032 32.1 7.3 88 83-205 252-340 (477)
392 cd08295 double_bond_reductase_ 75.5 33 0.00072 28.1 9.4 99 81-204 148-249 (338)
393 COG0287 TyrA Prephenate dehydr 75.3 39 0.00084 27.4 9.3 106 86-220 4-112 (279)
394 cd08278 benzyl_alcohol_DH Benz 75.0 33 0.00071 28.6 9.2 44 82-125 184-229 (365)
395 PF10354 DUF2431: Domain of un 74.9 24 0.00053 26.1 7.5 61 147-208 58-127 (166)
396 COG5379 BtaA S-adenosylmethion 74.7 10 0.00022 31.0 5.6 48 80-128 59-106 (414)
397 PRK07574 formate dehydrogenase 74.6 24 0.00052 30.1 8.3 105 84-219 191-301 (385)
398 cd08285 NADP_ADH NADP(H)-depen 74.2 18 0.0004 29.8 7.5 100 81-204 163-264 (351)
399 cd08236 sugar_DH NAD(P)-depend 73.9 18 0.00039 29.6 7.4 97 81-205 156-257 (343)
400 PRK05708 2-dehydropantoate 2-r 73.9 48 0.001 27.1 10.0 109 86-216 3-117 (305)
401 PLN02514 cinnamyl-alcohol dehy 73.5 38 0.00083 28.2 9.3 44 83-126 179-223 (357)
402 PLN02178 cinnamyl-alcohol dehy 73.5 18 0.00038 30.5 7.3 42 83-124 177-220 (375)
403 PRK05225 ketol-acid reductoiso 73.4 6.6 0.00014 34.1 4.6 90 83-205 34-130 (487)
404 PRK15469 ghrA bifunctional gly 73.2 16 0.00035 30.0 6.8 103 84-219 135-243 (312)
405 TIGR00936 ahcY adenosylhomocys 73.1 23 0.00051 30.3 7.9 87 83-205 193-281 (406)
406 cd05213 NAD_bind_Glutamyl_tRNA 73.0 29 0.00062 28.5 8.2 40 84-123 177-218 (311)
407 cd08296 CAD_like Cinnamyl alco 73.0 23 0.00051 29.0 7.8 45 81-125 160-205 (333)
408 PF02719 Polysacc_synt_2: Poly 72.4 8.4 0.00018 31.4 4.8 82 93-178 5-90 (293)
409 cd08233 butanediol_DH_like (2R 72.3 21 0.00046 29.4 7.5 101 81-205 169-271 (351)
410 PRK08306 dipicolinate synthase 72.0 23 0.00051 28.8 7.4 87 84-203 151-238 (296)
411 PF02086 MethyltransfD12: D12 71.8 6.5 0.00014 31.0 4.1 43 84-127 20-62 (260)
412 cd08242 MDR_like Medium chain 71.6 52 0.0011 26.6 10.1 91 81-204 152-243 (319)
413 cd08231 MDR_TM0436_like Hypoth 71.3 58 0.0013 26.9 9.9 42 84-125 177-220 (361)
414 PF03807 F420_oxidored: NADP o 71.3 18 0.0004 23.4 5.7 82 89-203 3-91 (96)
415 PF06016 Reovirus_L2: Reovirus 71.3 15 0.00033 35.8 6.8 101 84-204 822-925 (1289)
416 PRK06701 short chain dehydroge 71.2 50 0.0011 26.5 9.2 79 84-173 45-132 (290)
417 PRK06035 3-hydroxyacyl-CoA deh 70.5 25 0.00054 28.4 7.3 115 86-216 4-133 (291)
418 PRK09260 3-hydroxybutyryl-CoA 69.9 18 0.00039 29.2 6.4 116 87-217 3-130 (288)
419 COG1086 Predicted nucleoside-d 69.8 22 0.00047 31.8 7.0 88 84-180 249-340 (588)
420 PRK08293 3-hydroxybutyryl-CoA 69.6 31 0.00066 27.9 7.6 105 86-205 4-119 (287)
421 cd01065 NAD_bind_Shikimate_DH 69.6 27 0.00058 24.9 6.7 43 83-127 17-63 (155)
422 cd01842 SGNH_hydrolase_like_5 69.5 14 0.00031 27.7 5.1 44 162-205 47-98 (183)
423 PRK05476 S-adenosyl-L-homocyst 69.5 25 0.00053 30.4 7.2 86 84-205 211-298 (425)
424 KOG2918 Carboxymethyl transfer 69.3 64 0.0014 26.7 11.8 51 71-123 76-129 (335)
425 COG0275 Predicted S-adenosylme 69.0 11 0.00025 30.7 4.8 34 183-216 221-256 (314)
426 PRK13581 D-3-phosphoglycerate 69.0 32 0.00069 30.6 8.1 103 84-219 139-247 (526)
427 TIGR02356 adenyl_thiF thiazole 69.0 14 0.00029 28.3 5.2 33 84-116 20-54 (202)
428 TIGR00006 S-adenosyl-methyltra 68.9 11 0.00023 31.0 4.8 33 183-215 217-251 (305)
429 PRK11730 fadB multifunctional 68.5 44 0.00096 31.0 9.1 116 86-216 314-440 (715)
430 TIGR02437 FadB fatty oxidation 68.5 15 0.00033 34.0 6.2 107 86-208 314-430 (714)
431 PRK12939 short chain dehydroge 68.3 45 0.00098 25.7 8.2 80 84-174 6-93 (250)
432 PF03446 NAD_binding_2: NAD bi 68.3 44 0.00095 24.4 8.6 101 87-220 3-112 (163)
433 PF10237 N6-adenineMlase: Prob 68.2 46 0.00099 24.6 10.6 102 83-209 24-126 (162)
434 PF02558 ApbA: Ketopantoate re 68.1 16 0.00034 26.1 5.2 98 89-205 2-100 (151)
435 PRK06522 2-dehydropantoate 2-r 67.9 63 0.0014 26.0 9.2 96 87-204 2-98 (304)
436 PLN02545 3-hydroxybutyryl-CoA 67.9 64 0.0014 26.1 9.4 115 86-216 5-131 (295)
437 cd00650 LDH_MDH_like NAD-depen 67.5 55 0.0012 26.0 8.6 88 108-212 27-124 (263)
438 PLN03139 formate dehydrogenase 67.5 37 0.0008 28.9 7.9 105 84-219 198-308 (386)
439 PF01795 Methyltransf_5: MraW 67.2 11 0.00024 31.0 4.5 35 183-217 218-254 (310)
440 PRK00050 16S rRNA m(4)C1402 me 67.1 12 0.00027 30.5 4.8 33 183-215 213-247 (296)
441 KOG1197 Predicted quinone oxid 66.9 41 0.00088 27.1 7.3 99 81-204 143-243 (336)
442 COG0569 TrkA K+ transport syst 66.8 27 0.00058 27.2 6.5 67 87-172 2-73 (225)
443 PRK08265 short chain dehydroge 66.7 61 0.0013 25.4 9.4 77 84-174 5-89 (261)
444 KOG1201 Hydroxysteroid 17-beta 66.7 29 0.00063 28.3 6.7 79 84-174 37-123 (300)
445 PF01555 N6_N4_Mtase: DNA meth 65.9 7.7 0.00017 29.6 3.4 27 183-209 33-59 (231)
446 TIGR02819 fdhA_non_GSH formald 65.6 61 0.0013 27.5 8.9 106 82-204 183-297 (393)
447 PRK08410 2-hydroxyacid dehydro 65.0 28 0.0006 28.7 6.5 101 84-219 144-249 (311)
448 PRK11154 fadJ multifunctional 64.2 58 0.0013 30.2 9.1 116 86-216 310-437 (708)
449 cd01487 E1_ThiF_like E1_ThiF_l 63.9 58 0.0013 24.2 7.9 31 87-117 1-33 (174)
450 cd05281 TDH Threonine dehydrog 63.8 68 0.0015 26.3 8.8 98 83-205 162-261 (341)
451 cd08240 6_hydroxyhexanoate_dh_ 63.8 62 0.0014 26.6 8.6 42 84-125 175-218 (350)
452 PTZ00075 Adenosylhomocysteinas 63.6 32 0.0007 30.2 6.9 99 84-218 253-354 (476)
453 PRK10083 putative oxidoreducta 63.6 58 0.0012 26.6 8.3 46 81-126 157-205 (339)
454 PRK07806 short chain dehydroge 63.6 66 0.0014 24.8 8.9 110 84-204 5-132 (248)
455 PRK07530 3-hydroxybutyryl-CoA 63.2 25 0.00055 28.4 6.0 106 86-207 5-120 (292)
456 PRK08324 short chain dehydroge 63.2 53 0.0011 30.3 8.6 79 84-174 421-507 (681)
457 PRK05808 3-hydroxybutyryl-CoA 63.1 23 0.0005 28.5 5.7 103 87-206 5-118 (282)
458 PRK12475 thiamine/molybdopteri 62.7 22 0.00049 29.6 5.6 34 84-117 23-58 (338)
459 KOG0023 Alcohol dehydrogenase, 62.4 47 0.001 27.6 7.1 46 83-128 180-226 (360)
460 PRK06932 glycerate dehydrogena 62.3 33 0.00071 28.3 6.5 100 84-219 146-250 (314)
461 PRK15409 bifunctional glyoxyla 62.1 46 0.00099 27.6 7.3 103 84-219 144-253 (323)
462 PLN02928 oxidoreductase family 61.9 43 0.00093 28.0 7.2 117 84-219 158-279 (347)
463 cd08241 QOR1 Quinone oxidoredu 61.1 57 0.0012 26.0 7.8 44 82-125 137-182 (323)
464 COG1052 LdhA Lactate dehydroge 61.1 66 0.0014 26.7 8.1 103 84-220 145-254 (324)
465 PRK12491 pyrroline-5-carboxyla 61.1 85 0.0019 25.2 8.6 98 87-216 4-109 (272)
466 PF07101 DUF1363: Protein of u 61.0 3.3 7.2E-05 27.3 0.4 15 88-102 6-20 (124)
467 PRK08655 prephenate dehydrogen 60.6 1.1E+02 0.0025 26.5 10.2 33 164-203 57-89 (437)
468 PRK12921 2-dehydropantoate 2-r 60.1 69 0.0015 25.8 8.1 34 164-204 67-100 (305)
469 TIGR00692 tdh L-threonine 3-de 59.5 54 0.0012 26.9 7.5 99 83-205 160-260 (340)
470 KOG0022 Alcohol dehydrogenase, 59.3 26 0.00056 29.0 5.2 47 82-128 190-238 (375)
471 cd05298 GH4_GlvA_pagL_like Gly 59.2 1.2E+02 0.0026 26.4 10.1 38 87-125 2-47 (437)
472 TIGR02354 thiF_fam2 thiamine b 59.1 70 0.0015 24.4 7.4 33 84-116 20-54 (200)
473 PF01488 Shikimate_DH: Shikima 59.0 56 0.0012 23.0 6.5 75 83-176 10-86 (135)
474 KOG1209 1-Acyl dihydroxyaceton 58.8 87 0.0019 24.6 7.8 41 83-123 5-49 (289)
475 cd08291 ETR_like_1 2-enoyl thi 58.8 50 0.0011 26.9 7.1 31 95-125 156-186 (324)
476 PF07109 Mg-por_mtran_C: Magne 58.2 30 0.00064 23.2 4.5 43 174-220 4-46 (97)
477 PRK08644 thiamine biosynthesis 57.7 85 0.0018 24.2 7.8 33 84-116 27-61 (212)
478 TIGR02440 FadJ fatty oxidation 57.7 90 0.0019 29.0 9.1 116 86-216 305-432 (699)
479 cd08265 Zn_ADH3 Alcohol dehydr 57.5 55 0.0012 27.5 7.3 44 82-125 201-246 (384)
480 PF12242 Eno-Rase_NADH_b: NAD( 57.0 45 0.00096 21.3 4.9 34 83-116 37-73 (78)
481 cd08286 FDH_like_ADH2 formalde 56.9 74 0.0016 26.0 7.9 99 82-204 164-264 (345)
482 cd01339 LDH-like_MDH L-lactate 56.3 1.1E+02 0.0023 24.9 9.2 30 91-120 4-35 (300)
483 PRK06436 glycerate dehydrogena 56.3 56 0.0012 26.8 6.9 100 84-219 121-226 (303)
484 TIGR03201 dearomat_had 6-hydro 56.1 27 0.00058 28.9 5.1 46 81-126 163-209 (349)
485 PRK05396 tdh L-threonine 3-deh 55.6 62 0.0014 26.5 7.2 42 84-125 163-206 (341)
486 PF01210 NAD_Gly3P_dh_N: NAD-d 54.3 81 0.0017 22.8 7.6 102 88-207 2-104 (157)
487 PRK13403 ketol-acid reductoiso 54.1 99 0.0021 25.8 7.8 90 83-205 14-105 (335)
488 PRK08339 short chain dehydroge 54.0 74 0.0016 25.1 7.2 81 84-174 7-94 (263)
489 PRK10537 voltage-gated potassi 53.9 1.4E+02 0.0031 25.5 9.6 105 86-220 241-349 (393)
490 PRK07904 short chain dehydroge 53.8 64 0.0014 25.3 6.7 80 83-173 6-95 (253)
491 cd05279 Zn_ADH1 Liver alcohol 53.7 1.2E+02 0.0027 25.1 8.8 44 82-125 181-226 (365)
492 TIGR02818 adh_III_F_hyde S-(hy 53.7 42 0.00091 28.0 5.9 46 81-126 182-229 (368)
493 PRK06172 short chain dehydroge 53.6 72 0.0016 24.7 7.0 80 84-174 6-93 (253)
494 PRK08267 short chain dehydroge 53.6 72 0.0016 24.8 7.0 76 86-174 2-86 (260)
495 PRK07688 thiamine/molybdopteri 53.5 41 0.00088 28.1 5.7 34 84-117 23-58 (339)
496 PF06557 DUF1122: Protein of u 53.2 20 0.00044 26.4 3.3 25 183-207 63-87 (170)
497 PLN02256 arogenate dehydrogena 53.0 1.3E+02 0.0028 24.7 10.8 41 76-117 27-69 (304)
498 cd08279 Zn_ADH_class_III Class 52.9 1.3E+02 0.0029 24.9 9.0 98 82-205 180-281 (363)
499 TIGR01470 cysG_Nterm siroheme 52.8 97 0.0021 23.7 7.3 66 84-172 8-76 (205)
500 PRK07063 short chain dehydroge 52.7 83 0.0018 24.5 7.2 82 84-174 6-95 (260)
No 1
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.93 E-value=1.7e-25 Score=175.45 Aligned_cols=190 Identities=55% Similarity=0.919 Sum_probs=159.9
Q ss_pred CCCcccchhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhc
Q 027388 27 DSHFLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK 106 (224)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~ 106 (224)
+......+.+..+-..++.||+.........|..++++.++.+..|+++++.+....+++.++++|||-|+.++.+.+.+
T Consensus 60 d~~e~e~~~~~~~~~~Va~HYN~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAg 139 (389)
T KOG1975|consen 60 DRPEIEMEANESKSSEVAEHYNERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAG 139 (389)
T ss_pred cchhhHhhhccchhHHHHHHHHHHHHHhHhhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhc
Confidence 33344445566678899999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc-cCCCCCeeEEEEccccccccCCHHHH
Q 027388 107 IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV-LADDAPFDICSCQFAMHYSWSTEARA 185 (224)
Q Consensus 107 ~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~~D~i~~~~~l~~~~~~~~~~ 185 (224)
...++|+|+....++.|+++...- . .........+.|+.+|.....+.+. +..+.+||+|-|.+++||.|.+.+..
T Consensus 140 I~~~igiDIAevSI~qa~~RYrdm--~-~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~a 216 (389)
T KOG1975|consen 140 IGEYIGIDIAEVSINQARKRYRDM--K-NRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESA 216 (389)
T ss_pred ccceEeeehhhccHHHHHHHHHHH--H-hhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHH
Confidence 999999999999999999997510 0 0011223457899999765444333 22344599999999999999999999
Q ss_pred HHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhc
Q 027388 186 RRALANVSALLRPGGTFIGTMPDANVIIKKLREE 219 (224)
Q Consensus 186 ~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~ 219 (224)
.-+++++.+.|+|||++|.++|+.+.|+..+++.
T Consensus 217 r~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 217 RIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred HHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 9999999999999999999999999999999876
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.91 E-value=6.7e-24 Score=164.20 Aligned_cols=144 Identities=26% Similarity=0.465 Sum_probs=124.8
Q ss_pred hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEE
Q 027388 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVG 112 (224)
Q Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~g 112 (224)
+.....|++++..|+.. . .+.++...+.|.+.++..+...+|.+|||+|||||.++..+++. +.++++|
T Consensus 11 ~~v~~vF~~ia~~YD~~-n---------~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~ 80 (238)
T COG2226 11 EKVQKVFDKVAKKYDLM-N---------DLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVG 80 (238)
T ss_pred HHHHHHHHhhHHHHHhh-c---------ccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEE
Confidence 56778999999999842 2 34477889999999998887778999999999999999998864 4579999
Q ss_pred EeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHH
Q 027388 113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV 192 (224)
Q Consensus 113 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~ 192 (224)
+|+|+.|++.+++++... +... +.|+++|++++|+ ++++||+|++.+.|.++ ++..++|+++
T Consensus 81 ~D~s~~ML~~a~~k~~~~--------~~~~-i~fv~~dAe~LPf-----~D~sFD~vt~~fglrnv----~d~~~aL~E~ 142 (238)
T COG2226 81 LDISESMLEVAREKLKKK--------GVQN-VEFVVGDAENLPF-----PDNSFDAVTISFGLRNV----TDIDKALKEM 142 (238)
T ss_pred EECCHHHHHHHHHHhhcc--------Cccc-eEEEEechhhCCC-----CCCccCEEEeeehhhcC----CCHHHHHHHH
Confidence 999999999999998732 2233 8999999999998 78999999999999998 7899999999
Q ss_pred HhhccCCeEEEEE
Q 027388 193 SALLRPGGTFIGT 205 (224)
Q Consensus 193 ~~~lk~gG~li~~ 205 (224)
.|+|||||++++.
T Consensus 143 ~RVlKpgG~~~vl 155 (238)
T COG2226 143 YRVLKPGGRLLVL 155 (238)
T ss_pred HHhhcCCeEEEEE
Confidence 9999999987764
No 3
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.89 E-value=8e-23 Score=166.62 Aligned_cols=182 Identities=52% Similarity=0.923 Sum_probs=122.2
Q ss_pred HHHHHHHHHHhhhccccc--hhhhccCCceehhhhHHHHHHHHHHHhhc------CCCeEEEecCCCchhHHHHHhhcCC
Q 027388 37 KVFARKVADHYSRRTNQT--LEEREASPIIHLKKLNNWIKSVLVQLYAR------RGDVVLDLACGKGGDLIKWDKAKIG 108 (224)
Q Consensus 37 ~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~iLDiGcG~G~~~~~l~~~~~~ 108 (224)
...-+.++.+|+...... ...+..+++..++.+..|+++++.+.... ++.+|||+|||.|+.+..|......
T Consensus 7 ~~~~~~v~~hYn~~~~~~~~~~~R~~S~i~~lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~ 86 (331)
T PF03291_consen 7 SDVTDVVAEHYNQRPEVGIDLKERQESPIFHLRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIK 86 (331)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-S
T ss_pred ccHHHHHHHHHhccccccchhhhhhhChhHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCC
Confidence 445667889999887666 77888999999999999999999988777 8899999999999999999888889
Q ss_pred eEEEEeCChhHHHHHHHhccCCcc-cccccccCCCCeeEEeccccccccccccCC-CCCeeEEEEccccccccCCHHHHH
Q 027388 109 YYVGIDIAEGSIEDCRTRYNGDAD-HHQRRKKFSFPARLICGDCYEVHLDKVLAD-DAPFDICSCQFAMHYSWSTEARAR 186 (224)
Q Consensus 109 ~~~gvD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~~~D~i~~~~~l~~~~~~~~~~~ 186 (224)
.++|+|++...++.|+++...... .+...........++.+|.....+...... ..+||+|-|.+++||.+.+.....
T Consensus 87 ~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar 166 (331)
T PF03291_consen 87 HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKAR 166 (331)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHH
Confidence 999999999999999999831100 000111223446788888765443322212 369999999999999999999999
Q ss_pred HHHHHHHhhccCCeEEEEEeCChHHHHHHhhh
Q 027388 187 RALANVSALLRPGGTFIGTMPDANVIIKKLRE 218 (224)
Q Consensus 187 ~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~ 218 (224)
.+|+.+.+.|+|||++|.++|+.+.|...+++
T Consensus 167 ~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 167 QFLKNVSSLLKPGGYFIGTTPDSDEIVKRLRE 198 (331)
T ss_dssp HHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred HHHHHHHHhcCCCCEEEEEecCHHHHHHHHHh
Confidence 99999999999999999999999999887776
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.89 E-value=6.5e-23 Score=160.10 Aligned_cols=144 Identities=26% Similarity=0.522 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEE
Q 027388 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYV 111 (224)
Q Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~ 111 (224)
...+..|++++..|+.. .. +.++.....|.+.++......++.+|||+|||||.++..+++. ..++++
T Consensus 7 ~~v~~~Fd~ia~~YD~~-n~---------~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~ 76 (233)
T PF01209_consen 7 QYVRKMFDRIAPRYDRM-ND---------LLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVV 76 (233)
T ss_dssp ----------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEE
T ss_pred HHHHHHHHHHHHHhCCC-cc---------ccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEE
Confidence 45678999999999843 22 2255666777777777667788899999999999999988764 246899
Q ss_pred EEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHH
Q 027388 112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191 (224)
Q Consensus 112 gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~ 191 (224)
|+|+|+.|++.|+++.... ... +++++++|+++++. ++++||+|++.+.++++ +++.+++++
T Consensus 77 ~vD~s~~ML~~a~~k~~~~--------~~~-~i~~v~~da~~lp~-----~d~sfD~v~~~fglrn~----~d~~~~l~E 138 (233)
T PF01209_consen 77 GVDISPGMLEVARKKLKRE--------GLQ-NIEFVQGDAEDLPF-----PDNSFDAVTCSFGLRNF----PDRERALRE 138 (233)
T ss_dssp EEES-HHHHHHHHHHHHHT--------T---SEEEEE-BTTB--S------TT-EEEEEEES-GGG-----SSHHHHHHH
T ss_pred EecCCHHHHHHHHHHHHhh--------CCC-CeeEEEcCHHHhcC-----CCCceeEEEHHhhHHhh----CCHHHHHHH
Confidence 9999999999999997621 222 69999999999998 68999999999999987 678899999
Q ss_pred HHhhccCCeEEEEE
Q 027388 192 VSALLRPGGTFIGT 205 (224)
Q Consensus 192 ~~~~lk~gG~li~~ 205 (224)
+.|+|||||.+++.
T Consensus 139 ~~RVLkPGG~l~il 152 (233)
T PF01209_consen 139 MYRVLKPGGRLVIL 152 (233)
T ss_dssp HHHHEEEEEEEEEE
T ss_pred HHHHcCCCeEEEEe
Confidence 99999999988763
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.87 E-value=8.3e-21 Score=151.25 Aligned_cols=147 Identities=21% Similarity=0.328 Sum_probs=110.9
Q ss_pred hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhc--CCeEE
Q 027388 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYV 111 (224)
Q Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~ 111 (224)
...+++|+.++..|+..... . ++.....|....+......++.+|||+|||+|.++..+++.. ..+++
T Consensus 33 ~~v~~~f~~~A~~YD~~~~~-~---------s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~ 102 (261)
T PLN02233 33 NERQALFNRIAPVYDNLNDL-L---------SLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVM 102 (261)
T ss_pred HHHHHHHHHhhhHHHHhhhh-h---------cCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEE
Confidence 45677999999999842211 1 122233444444444455678899999999999988877542 35899
Q ss_pred EEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHH
Q 027388 112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191 (224)
Q Consensus 112 gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~ 191 (224)
|+|+|+.|++.|+++.... ......++.++++|+.++++ ++++||+|++.++++++ +++..++++
T Consensus 103 gvD~S~~ml~~A~~r~~~~------~~~~~~~i~~~~~d~~~lp~-----~~~sfD~V~~~~~l~~~----~d~~~~l~e 167 (261)
T PLN02233 103 GLDFSSEQLAVAASRQELK------AKSCYKNIEWIEGDATDLPF-----DDCYFDAITMGYGLRNV----VDRLKAMQE 167 (261)
T ss_pred EEECCHHHHHHHHHHhhhh------hhccCCCeEEEEcccccCCC-----CCCCEeEEEEecccccC----CCHHHHHHH
Confidence 9999999999998775310 11223468999999998877 57899999999999988 678999999
Q ss_pred HHhhccCCeEEEEE
Q 027388 192 VSALLRPGGTFIGT 205 (224)
Q Consensus 192 ~~~~lk~gG~li~~ 205 (224)
+.++|||||.+++.
T Consensus 168 i~rvLkpGG~l~i~ 181 (261)
T PLN02233 168 MYRVLKPGSRVSIL 181 (261)
T ss_pred HHHHcCcCcEEEEE
Confidence 99999999998875
No 6
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.86 E-value=1.4e-20 Score=153.11 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=91.1
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
++.+|||||||+|.++..++. ...+|+|||+|+.+++.|+.+... .....++.++++++++++. ..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~--------~~~~~~i~~~~~dae~l~~-----~~ 196 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADM--------DPVTSTIEYLCTTAEKLAD-----EG 196 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHh--------cCcccceeEEecCHHHhhh-----cc
Confidence 567999999999999988875 446899999999999999987541 1223468999999887765 45
Q ss_pred CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~ 209 (224)
++||+|++..+++|+ .++..+++++.++|||||.++++++|.
T Consensus 197 ~~FD~Vi~~~vLeHv----~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 197 RKFDAVLSLEVIEHV----ANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred CCCCEEEEhhHHHhc----CCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 799999999999998 677899999999999999999998764
No 7
>PLN02244 tocopherol O-methyltransferase
Probab=99.85 E-value=7.8e-20 Score=150.87 Aligned_cols=107 Identities=17% Similarity=0.251 Sum_probs=92.5
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.++.+|||||||+|.++..+++....+++|+|+|+.+++.++++.. ..++..++.++++|+.++++ +
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~--------~~g~~~~v~~~~~D~~~~~~-----~ 183 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAA--------AQGLSDKVSFQVADALNQPF-----E 183 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH--------hcCCCCceEEEEcCcccCCC-----C
Confidence 5678999999999999998886656799999999999999998765 23445579999999988776 5
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
+++||+|++..+++|+ .+...+++++.++|||||.|++.+
T Consensus 184 ~~~FD~V~s~~~~~h~----~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 184 DGQFDLVWSMESGEHM----PDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCCccEEEECCchhcc----CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 7899999999999998 567899999999999999999853
No 8
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.84 E-value=1.1e-19 Score=142.70 Aligned_cols=144 Identities=22% Similarity=0.443 Sum_probs=114.4
Q ss_pred hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEE
Q 027388 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYV 111 (224)
Q Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~ 111 (224)
.....+|+.++..|+.... +.++.....|.+.++..+...++.+|||+|||+|.++..+++. ...+++
T Consensus 5 ~~~~~~f~~~a~~yd~~~~----------~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~ 74 (231)
T TIGR02752 5 ERVHKVFEKIYKKYDRMNS----------VISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVI 74 (231)
T ss_pred HHHHHHHHHhhhHHhHHHH----------HhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEE
Confidence 4567899999999985321 1134556667777777666677899999999999999988764 245899
Q ss_pred EEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHH
Q 027388 112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191 (224)
Q Consensus 112 gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~ 191 (224)
|+|+|+.+++.+++++.. ... .++.++++|+.+.+. +.++||+|++..+++++ ++...++++
T Consensus 75 gvD~s~~~~~~a~~~~~~--------~~~-~~v~~~~~d~~~~~~-----~~~~fD~V~~~~~l~~~----~~~~~~l~~ 136 (231)
T TIGR02752 75 GLDFSENMLSVGRQKVKD--------AGL-HNVELVHGNAMELPF-----DDNSFDYVTIGFGLRNV----PDYMQVLRE 136 (231)
T ss_pred EEECCHHHHHHHHHHHHh--------cCC-CceEEEEechhcCCC-----CCCCccEEEEecccccC----CCHHHHHHH
Confidence 999999999999988752 122 358999999987765 46799999999999887 567889999
Q ss_pred HHhhccCCeEEEEE
Q 027388 192 VSALLRPGGTFIGT 205 (224)
Q Consensus 192 ~~~~lk~gG~li~~ 205 (224)
+.++|+|||.+++.
T Consensus 137 ~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 137 MYRVVKPGGKVVCL 150 (231)
T ss_pred HHHHcCcCeEEEEE
Confidence 99999999999875
No 9
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.84 E-value=1.9e-20 Score=142.84 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=93.0
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
..+.+|||+|||.|.++..++..+ ..|+|+|+|+.+++.|+.+.... +.++.+.+..++++.. .
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~----------gv~i~y~~~~~edl~~-----~ 121 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALES----------GVNIDYRQATVEDLAS-----A 121 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhc----------cccccchhhhHHHHHh-----c
Confidence 478999999999999999998666 69999999999999999987622 3336677777777654 3
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChH
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~ 210 (224)
.++||+|+|..+++|+ +++..+++.|.+.+||||.++++++|..
T Consensus 122 ~~~FDvV~cmEVlEHv----~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 122 GGQFDVVTCMEVLEHV----PDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred CCCccEEEEhhHHHcc----CCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 4899999999999999 7888999999999999999999999854
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.82 E-value=1.6e-19 Score=125.84 Aligned_cols=110 Identities=31% Similarity=0.469 Sum_probs=89.5
Q ss_pred CCCeEEEecCCCchhHHHHHh-hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~-~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
++.+|||||||+|.++..+++ ....+++|+|+|+.+++.+++++. ......+++++++|+ ..... .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~i~~~~~d~-~~~~~----~ 67 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAA--------EEGLSDRITFVQGDA-EFDPD----F 67 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHH--------HTTTTTTEEEEESCC-HGGTT----T
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH--------hcCCCCCeEEEECcc-ccCcc----c
Confidence 578999999999999999987 366789999999999999999984 235567899999999 22221 3
Q ss_pred CCCeeEEEEcc-ccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 163 DAPFDICSCQF-AMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 163 ~~~~D~i~~~~-~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
.++||+|++.. ++++++ ..++...+++.+.+.|+|||+|++.++
T Consensus 68 ~~~~D~v~~~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 68 LEPFDLVICSGFTLHFLL-PLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp SSCEEEEEECSGSGGGCC-HHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCCCCEEEECCCcccccc-chhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 56799999999 555442 236789999999999999999999863
No 11
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.82 E-value=2.1e-19 Score=121.15 Aligned_cols=95 Identities=27% Similarity=0.439 Sum_probs=83.0
Q ss_pred EEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeE
Q 027388 89 LDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDI 168 (224)
Q Consensus 89 LDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~ 168 (224)
||+|||+|..+..+++....+++++|+++.+++.++++.. ...+.+.++|+.+++. ++++||+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~------------~~~~~~~~~d~~~l~~-----~~~sfD~ 63 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK------------NEGVSFRQGDAEDLPF-----PDNSFDV 63 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT------------TSTEEEEESBTTSSSS------TT-EEE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc------------ccCchheeehHHhCcc-----ccccccc
Confidence 8999999999999987757799999999999999999987 4446699999999987 6899999
Q ss_pred EEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 169 CSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 169 i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
|++..+++|+ +++..+++++.|+|||||++++
T Consensus 64 v~~~~~~~~~----~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 64 VFSNSVLHHL----EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEESHGGGS----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccceeec----cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999998 8899999999999999999986
No 12
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.81 E-value=1.4e-18 Score=132.91 Aligned_cols=157 Identities=21% Similarity=0.297 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh-c------CCe
Q 027388 37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-K------IGY 109 (224)
Q Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~------~~~ 109 (224)
..-|..+|..|+- .++.+ ++...+-|-.-.+..+.+..+.++||++||||..+..+... . ..+
T Consensus 63 ~~vF~~vA~~YD~-mND~m---------SlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~ 132 (296)
T KOG1540|consen 63 HHVFESVAKKYDI-MNDAM---------SLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESK 132 (296)
T ss_pred HHHHHHHHHHHHH-HHHHh---------hcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCce
Confidence 4577888888873 33332 44556667444556777888899999999999999988764 2 268
Q ss_pred EEEEeCChhHHHHHHHhccCCcccccccccCCC--CeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHH
Q 027388 110 YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF--PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARR 187 (224)
Q Consensus 110 ~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~ 187 (224)
|+++|++++|+..++++.+.. ++.. .+.++++|++++++ +++.||+.++.+.+.++ .++.+
T Consensus 133 V~v~Dinp~mL~vgkqRa~~~--------~l~~~~~~~w~~~dAE~LpF-----dd~s~D~yTiafGIRN~----th~~k 195 (296)
T KOG1540|consen 133 VTVLDINPHMLAVGKQRAKKR--------PLKASSRVEWVEGDAEDLPF-----DDDSFDAYTIAFGIRNV----THIQK 195 (296)
T ss_pred EEEEeCCHHHHHHHHHHHhhc--------CCCcCCceEEEeCCcccCCC-----CCCcceeEEEecceecC----CCHHH
Confidence 999999999999999998632 3333 38999999999998 78999999999999988 78999
Q ss_pred HHHHHHhhccCCeEEEEEe-CChH-HHHHHhhhcc
Q 027388 188 ALANVSALLRPGGTFIGTM-PDAN-VIIKKLREEH 220 (224)
Q Consensus 188 ~l~~~~~~lk~gG~li~~~-~~~~-~~~~~~~~~g 220 (224)
.+++.+|+|||||+|.+-. +..+ ..+..|-+++
T Consensus 196 ~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~y 230 (296)
T KOG1540|consen 196 ALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQY 230 (296)
T ss_pred HHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhh
Confidence 9999999999999877643 3333 3444444443
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.81 E-value=3.2e-19 Score=141.99 Aligned_cols=149 Identities=20% Similarity=0.228 Sum_probs=108.9
Q ss_pred HHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCCh
Q 027388 38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE 117 (224)
Q Consensus 38 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~ 117 (224)
+.|++++.+|.+........+... .-...-+..++..+. .++.+|||+|||+|.++..++.. ..+|+++|+|+
T Consensus 4 ~~fd~~a~~f~~~~y~~~~g~~r~-----~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~ 76 (255)
T PRK11036 4 RNFDDIAEKFSRNIYGTTKGQIRQ-----AILWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSA 76 (255)
T ss_pred CChhhHHHHHHHhccCCCccHHHH-----HHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCH
Confidence 578899999987555443222110 111111223333332 45679999999999999998765 46899999999
Q ss_pred hHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhcc
Q 027388 118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR 197 (224)
Q Consensus 118 ~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk 197 (224)
.|++.|+++.. ..++..+++++++|+.++... ..++||+|++..+++|+ .++..++.++.++||
T Consensus 77 ~~l~~a~~~~~--------~~g~~~~v~~~~~d~~~l~~~----~~~~fD~V~~~~vl~~~----~~~~~~l~~~~~~Lk 140 (255)
T PRK11036 77 EMIQRAKQAAE--------AKGVSDNMQFIHCAAQDIAQH----LETPVDLILFHAVLEWV----ADPKSVLQTLWSVLR 140 (255)
T ss_pred HHHHHHHHHHH--------hcCCccceEEEEcCHHHHhhh----cCCCCCEEEehhHHHhh----CCHHHHHHHHHHHcC
Confidence 99999999876 234455689999998776421 35789999999999998 567789999999999
Q ss_pred CCeEEEEEeCCh
Q 027388 198 PGGTFIGTMPDA 209 (224)
Q Consensus 198 ~gG~li~~~~~~ 209 (224)
|||+|++...+.
T Consensus 141 pgG~l~i~~~n~ 152 (255)
T PRK11036 141 PGGALSLMFYNA 152 (255)
T ss_pred CCeEEEEEEECc
Confidence 999998875553
No 14
>PRK05785 hypothetical protein; Provisional
Probab=99.80 E-value=1.5e-18 Score=135.44 Aligned_cols=139 Identities=23% Similarity=0.324 Sum_probs=104.2
Q ss_pred hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHh--hcCCCeEEEecCCCchhHHHHHhhcCCeEE
Q 027388 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLY--ARRGDVVLDLACGKGGDLIKWDKAKIGYYV 111 (224)
Q Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~ 111 (224)
....+.|+.++..|+.... . .++.....|.+.++..+. ..++.+|||+|||||.++..++.....+++
T Consensus 9 ~~v~~~f~~iA~~YD~~n~-~---------~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~ 78 (226)
T PRK05785 9 EELQEAYNKIPKAYDRANR-F---------ISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVV 78 (226)
T ss_pred HHHHHHHHhhhHHHHHhhh-h---------ccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEE
Confidence 4567899999999985321 1 122334456555555432 235789999999999999888755446899
Q ss_pred EEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHH
Q 027388 112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191 (224)
Q Consensus 112 gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~ 191 (224)
|+|+|+.|++.|++. ..++++|++++++ ++++||+|++.++++++ +++.+++++
T Consensus 79 gvD~S~~Ml~~a~~~-----------------~~~~~~d~~~lp~-----~d~sfD~v~~~~~l~~~----~d~~~~l~e 132 (226)
T PRK05785 79 ALDYAENMLKMNLVA-----------------DDKVVGSFEALPF-----RDKSFDVVMSSFALHAS----DNIEKVIAE 132 (226)
T ss_pred EECCCHHHHHHHHhc-----------------cceEEechhhCCC-----CCCCEEEEEecChhhcc----CCHHHHHHH
Confidence 999999999999764 1356888888876 67899999999999987 678999999
Q ss_pred HHhhccCCe-EEEEEeCC
Q 027388 192 VSALLRPGG-TFIGTMPD 208 (224)
Q Consensus 192 ~~~~lk~gG-~li~~~~~ 208 (224)
+.++|||.+ ++-+..|+
T Consensus 133 ~~RvLkp~~~ile~~~p~ 150 (226)
T PRK05785 133 FTRVSRKQVGFIAMGKPD 150 (226)
T ss_pred HHHHhcCceEEEEeCCCC
Confidence 999999953 34444554
No 15
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.80 E-value=2.2e-18 Score=136.87 Aligned_cols=137 Identities=21% Similarity=0.333 Sum_probs=103.6
Q ss_pred hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEE
Q 027388 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI 113 (224)
Q Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gv 113 (224)
......|++.+..|+.... ........++..+...++.+|||+|||+|.++..+.. ....++++
T Consensus 7 ~~i~~~F~~aa~~Y~~~~~---------------~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~~ 70 (251)
T PRK10258 7 QAIAAAFGRAAAHYEQHAE---------------LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRE-RGSQVTAL 70 (251)
T ss_pred HHHHHHHHHHHHhHhHHHH---------------HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHH-cCCeEEEE
Confidence 3455678888888873110 1111222233333334568999999999998888764 45689999
Q ss_pred eCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHH
Q 027388 114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS 193 (224)
Q Consensus 114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~ 193 (224)
|+|+.|++.++++.. ...++++|+..++. ..++||+|+++.+++|+ .++..++.++.
T Consensus 71 D~s~~~l~~a~~~~~--------------~~~~~~~d~~~~~~-----~~~~fD~V~s~~~l~~~----~d~~~~l~~~~ 127 (251)
T PRK10258 71 DLSPPMLAQARQKDA--------------ADHYLAGDIESLPL-----ATATFDLAWSNLAVQWC----GNLSTALRELY 127 (251)
T ss_pred ECCHHHHHHHHhhCC--------------CCCEEEcCcccCcC-----CCCcEEEEEECchhhhc----CCHHHHHHHHH
Confidence 999999999988754 24678999988765 56789999999999987 67889999999
Q ss_pred hhccCCeEEEEEeCCh
Q 027388 194 ALLRPGGTFIGTMPDA 209 (224)
Q Consensus 194 ~~lk~gG~li~~~~~~ 209 (224)
++|+|||.++++++..
T Consensus 128 ~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 128 RVVRPGGVVAFTTLVQ 143 (251)
T ss_pred HHcCCCeEEEEEeCCC
Confidence 9999999999987654
No 16
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.79 E-value=4.8e-18 Score=135.55 Aligned_cols=115 Identities=18% Similarity=0.249 Sum_probs=95.6
Q ss_pred HHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (224)
Q Consensus 74 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 153 (224)
..++..+.+.++.+|||||||+|..+..++.....+|+++|+|+.+++.|+++... ..++.+.++|+.+
T Consensus 42 ~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-----------~~~i~~~~~D~~~ 110 (263)
T PTZ00098 42 TKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-----------KNKIEFEANDILK 110 (263)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-----------CCceEEEECCccc
Confidence 44555556678899999999999998888765556999999999999999988651 3458999999887
Q ss_pred cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
.+. ++++||+|++..+++|+ +..++..+++++.++|||||.|++..
T Consensus 111 ~~~-----~~~~FD~V~s~~~l~h~--~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 111 KDF-----PENTFDMIYSRDAILHL--SYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred CCC-----CCCCeEEEEEhhhHHhC--CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 665 56899999999888876 54588999999999999999999863
No 17
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.78 E-value=4.5e-18 Score=125.06 Aligned_cols=109 Identities=29% Similarity=0.483 Sum_probs=91.1
Q ss_pred cCCCeEEEecCCCchhHHHHHh-h-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 83 RRGDVVLDLACGKGGDLIKWDK-A-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~-~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
.++.+|||+|||+|.++..++. . ...+++|+|+|+.+++.|++++.. .... +++++++|+.+++.. .
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~--------~~~~-ni~~~~~d~~~l~~~-~- 70 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE--------LGLD-NIEFIQGDIEDLPQE-L- 70 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH--------TTST-TEEEEESBTTCGCGC-S-
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc--------cccc-ccceEEeehhccccc-c-
Confidence 4678999999999999999984 2 356899999999999999998762 2334 699999999986521 0
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
. +.||+|++..+++++ .+...+++++.++|++||.+++..+.
T Consensus 71 -~-~~~D~I~~~~~l~~~----~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 71 -E-EKFDIIISNGVLHHF----PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -S-TTEEEEEEESTGGGT----SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -C-CCeeEEEEcCchhhc----cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 2 799999999999887 77889999999999999999998776
No 18
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.77 E-value=1.8e-17 Score=130.66 Aligned_cols=108 Identities=19% Similarity=0.367 Sum_probs=90.0
Q ss_pred hcCCCeEEEecCCCchhHHHHHhh---cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~---~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
..++.+|||+|||+|.++..+++. ...+++|+|+|+.|++.|++++.. .....+++++++|+.+++.
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~--------~~~~~~v~~~~~d~~~~~~-- 120 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA--------YHSEIPVEILCNDIRHVEI-- 120 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh--------cCCCCCeEEEECChhhCCC--
Confidence 356789999999999999888764 356899999999999999998762 2223468999999987764
Q ss_pred ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
..+|+|++..+++|+ ...+...+++++.+.|+|||.|++..
T Consensus 121 -----~~~d~v~~~~~l~~~--~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 121 -----KNASMVILNFTLQFL--PPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred -----CCCCEEeeecchhhC--CHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 358999999999998 56678999999999999999999874
No 19
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=4.5e-18 Score=134.15 Aligned_cols=134 Identities=22% Similarity=0.253 Sum_probs=110.0
Q ss_pred HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (224)
Q Consensus 72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (224)
.++.++..+.+.+|.+|||||||.|.+++.+++....+|+|+++|+++.+.+++++. ..++..++++...|.
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~--------~~gl~~~v~v~l~d~ 131 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIA--------ARGLEDNVEVRLQDY 131 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHH--------HcCCCcccEEEeccc
Confidence 344456667889999999999999999999987777899999999999999999887 456666799999998
Q ss_pred cccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe---CC------hHHHHHHhhhcccc
Q 027388 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM---PD------ANVIIKKLREEHFC 222 (224)
Q Consensus 152 ~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~---~~------~~~~~~~~~~~gf~ 222 (224)
.++. +.||-|++.++++|+ +......+|+.+.++|+|||.+++-+ +. ...|...+.+.|++
T Consensus 132 rd~~--------e~fDrIvSvgmfEhv--g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~l 201 (283)
T COG2230 132 RDFE--------EPFDRIVSVGMFEHV--GKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGEL 201 (283)
T ss_pred cccc--------cccceeeehhhHHHh--CcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcC
Confidence 8765 349999999999999 77889999999999999999988642 22 23455566666655
Q ss_pred c
Q 027388 223 H 223 (224)
Q Consensus 223 ~ 223 (224)
+
T Consensus 202 P 202 (283)
T COG2230 202 P 202 (283)
T ss_pred C
Confidence 4
No 20
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.76 E-value=8.9e-18 Score=137.22 Aligned_cols=119 Identities=16% Similarity=0.170 Sum_probs=96.7
Q ss_pred cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
.++.+|||||||+|.++..+++. ....++++|+|+.|++.|+++.. ..++.++.+|+.+++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------------~~~i~~i~gD~e~lp~----- 174 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------------LKECKIIEGDAEDLPF----- 174 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------------ccCCeEEeccHHhCCC-----
Confidence 45789999999999988887654 34689999999999999998754 2357889999988776
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC-------------------ChHHHHHHhhhcccc
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP-------------------DANVIIKKLREEHFC 222 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~-------------------~~~~~~~~~~~~gf~ 222 (224)
..+.||+|++..+++++ .+...+++++.++|+|||.+++..+ ..+.+.+.++++||.
T Consensus 175 ~~~sFDvVIs~~~L~~~----~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~ 250 (340)
T PLN02490 175 PTDYADRYVSAGSIEYW----PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFK 250 (340)
T ss_pred CCCceeEEEEcChhhhC----CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCe
Confidence 46789999999999987 4567899999999999999877421 235667788888885
No 21
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.75 E-value=2.7e-18 Score=132.04 Aligned_cols=109 Identities=21% Similarity=0.277 Sum_probs=89.1
Q ss_pred CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (224)
+++|||+|||+|.++..|++.+ ..|+|+|+++.|++.|+++......++ ..+..++.+.+.+++.+. +
T Consensus 90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~---~~~~y~l~~~~~~~E~~~--------~ 157 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLE---GAIAYRLEYEDTDVEGLT--------G 157 (282)
T ss_pred CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhc---cccceeeehhhcchhhcc--------c
Confidence 4789999999999999998555 699999999999999999955332221 223334667777776553 4
Q ss_pred CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (224)
Q Consensus 165 ~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~ 209 (224)
.||.|+|..+++|+ .++..++..+.++|+|||.|++++.|.
T Consensus 158 ~fDaVvcsevleHV----~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHV----KDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred ccceeeeHHHHHHH----hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 69999999999999 899999999999999999999997763
No 22
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.75 E-value=2e-17 Score=135.29 Aligned_cols=109 Identities=20% Similarity=0.181 Sum_probs=87.1
Q ss_pred HHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 79 QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
.+....+++|||||||+|.++..++..+...|+|+|+|+.++..++..... .....++.++.+++.+++.
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~--------~~~~~~i~~~~~d~e~lp~-- 186 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKL--------LGNDQRAHLLPLGIEQLPA-- 186 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHh--------cCCCCCeEEEeCCHHHCCC--
Confidence 333456789999999999999998877766799999999998764432110 0113468999999987764
Q ss_pred ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.+.||+|+|..+++|+ .++..+++++++.|+|||.+++.
T Consensus 187 ----~~~FD~V~s~~vl~H~----~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 187 ----LKAFDTVFSMGVLYHR----RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ----cCCcCEEEECChhhcc----CCHHHHHHHHHHhcCCCcEEEEE
Confidence 4789999999999997 67789999999999999999975
No 23
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.75 E-value=2.4e-17 Score=130.50 Aligned_cols=108 Identities=21% Similarity=0.393 Sum_probs=89.7
Q ss_pred hcCCCeEEEecCCCchhHHHHHhh---cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~---~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
..++.+|||||||+|..+..++.. ...+++|+|+|+.|++.|++++.. .+...++.++++|+.+++.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~--------~~~~~~v~~~~~d~~~~~~-- 123 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA--------YKAPTPVDVIEGDIRDIAI-- 123 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh--------cCCCCCeEEEeCChhhCCC--
Confidence 457789999999999998887652 356899999999999999999762 2334468999999877654
Q ss_pred ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
..+|+|+++.+++++ ...+...+++++.+.|+|||.|++..
T Consensus 124 -----~~~D~vv~~~~l~~l--~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 124 -----ENASMVVLNFTLQFL--EPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred -----CCCCEEehhhHHHhC--CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 358999999999988 55677899999999999999999863
No 24
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.75 E-value=2.3e-17 Score=126.25 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=86.5
Q ss_pred hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.+++.... .++ .++.+.+.|+.+.+.
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~--------~~~-~~v~~~~~d~~~~~~----- 92 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAA--------ENL-DNLHTAVVDLNNLTF----- 92 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHH--------cCC-CcceEEecChhhCCc-----
Confidence 346789999999999999998865 45899999999999999988762 222 247888888876654
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
.++||+|+++.+++++ +..+...+++++.++|+|||++++
T Consensus 93 -~~~fD~I~~~~~~~~~--~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 93 -DGEYDFILSTVVLMFL--EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred -CCCcCEEEEecchhhC--CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 4679999999999887 567889999999999999998554
No 25
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.75 E-value=8.7e-17 Score=126.57 Aligned_cols=146 Identities=27% Similarity=0.418 Sum_probs=110.2
Q ss_pred chhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhc--CCeE
Q 027388 33 DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYY 110 (224)
Q Consensus 33 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~ 110 (224)
......+|+.++..|+...... .......+...++......++.+|||+|||+|.++..++... ..++
T Consensus 10 ~~~~~~~~~~~~~~y~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v 79 (239)
T PRK00216 10 QEKVAEMFDSIAPKYDLMNDLL----------SFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEV 79 (239)
T ss_pred hHHHHHHHHHhhhhHHHHHHHH----------hcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeE
Confidence 4566779999999997321110 011233444555555545567899999999999999887655 3799
Q ss_pred EEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHH
Q 027388 111 VGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA 190 (224)
Q Consensus 111 ~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~ 190 (224)
+++|+++.+++.+++++.. .....++.++.+|+...+. ..+.||+|++..+++++ .++..++.
T Consensus 80 ~~~D~s~~~~~~a~~~~~~--------~~~~~~~~~~~~d~~~~~~-----~~~~~D~I~~~~~l~~~----~~~~~~l~ 142 (239)
T PRK00216 80 VGLDFSEGMLAVGREKLRD--------LGLSGNVEFVQGDAEALPF-----PDNSFDAVTIAFGLRNV----PDIDKALR 142 (239)
T ss_pred EEEeCCHHHHHHHHHhhcc--------cccccCeEEEecccccCCC-----CCCCccEEEEecccccC----CCHHHHHH
Confidence 9999999999999998762 2234568899999887654 45789999999999887 56789999
Q ss_pred HHHhhccCCeEEEEE
Q 027388 191 NVSALLRPGGTFIGT 205 (224)
Q Consensus 191 ~~~~~lk~gG~li~~ 205 (224)
.+.++|+|||.+++.
T Consensus 143 ~~~~~L~~gG~li~~ 157 (239)
T PRK00216 143 EMYRVLKPGGRLVIL 157 (239)
T ss_pred HHHHhccCCcEEEEE
Confidence 999999999998764
No 26
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.75 E-value=1.7e-17 Score=132.49 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=90.9
Q ss_pred HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (224)
Q Consensus 73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 152 (224)
+..++..+.+.++.+|||||||.|.++..+++....+|+|+.+|+...+.+++++. ..++...+.+..+|..
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~--------~~gl~~~v~v~~~D~~ 122 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIR--------EAGLEDRVEVRLQDYR 122 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHH--------CSTSSSTEEEEES-GG
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHH--------hcCCCCceEEEEeecc
Confidence 44445566788999999999999999999998767799999999999999999987 4566778999999987
Q ss_pred ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
+++ .+||.|++.++++|+ +......+++.+.++|+|||.+++.
T Consensus 123 ~~~--------~~fD~IvSi~~~Ehv--g~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 123 DLP--------GKFDRIVSIEMFEHV--GRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp G-----------S-SEEEEESEGGGT--CGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred ccC--------CCCCEEEEEechhhc--ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 653 489999999999998 7778899999999999999999875
No 27
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.75 E-value=6.8e-17 Score=139.47 Aligned_cols=112 Identities=21% Similarity=0.266 Sum_probs=93.2
Q ss_pred HHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (224)
Q Consensus 76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (224)
++..+...++.+|||||||+|..+..++.....+++|+|+|+.+++.|+++.. ....++.+.++|+...+
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~----------~~~~~v~~~~~d~~~~~ 327 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI----------GRKCSVEFEVADCTKKT 327 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh----------cCCCceEEEEcCcccCC
Confidence 34444456678999999999999988876556689999999999999988764 23446899999988766
Q ss_pred cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
+ +.++||+|++..+++|+ .++..+++++.++|+|||.|++..
T Consensus 328 ~-----~~~~fD~I~s~~~l~h~----~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 328 Y-----PDNSFDVIYSRDTILHI----QDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred C-----CCCCEEEEEECCccccc----CCHHHHHHHHHHHcCCCeEEEEEE
Confidence 5 45789999999999998 678899999999999999999874
No 28
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.74 E-value=9.9e-17 Score=130.10 Aligned_cols=110 Identities=17% Similarity=0.082 Sum_probs=85.4
Q ss_pred HHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388 78 VQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (224)
Q Consensus 78 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (224)
..+...++++|||||||+|.++..++..+...++|+|+|+.|+..++..... .....++.+..+++.+++.
T Consensus 115 ~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~--------~~~~~~v~~~~~~ie~lp~- 185 (314)
T TIGR00452 115 PHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKL--------LDNDKRAILEPLGIEQLHE- 185 (314)
T ss_pred HhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHH--------hccCCCeEEEECCHHHCCC-
Confidence 3334567889999999999998888766666899999999998764322110 0112357788888877653
Q ss_pred cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
...||+|+|.++++|+ .++..++++++++|+|||.|++.
T Consensus 186 -----~~~FD~V~s~gvL~H~----~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 186 -----LYAFDTVFSMGVLYHR----KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred -----CCCcCEEEEcchhhcc----CCHHHHHHHHHHhcCCCCEEEEE
Confidence 3589999999999998 67789999999999999999975
No 29
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.74 E-value=2.4e-17 Score=131.17 Aligned_cols=106 Identities=20% Similarity=0.252 Sum_probs=88.0
Q ss_pred HHHHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (224)
Q Consensus 76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (224)
++..+...++.+|||||||+|.++..++... ..+++|+|+|+.|++.|++. ++.++++|+.++
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----------------~~~~~~~d~~~~ 84 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----------------GVDARTGDVRDW 84 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----------------CCcEEEcChhhC
Confidence 4444445678899999999999999887653 45899999999999999753 267889998765
Q ss_pred ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
. ..++||+|+++.+++|+ +++..+++++.++|||||.+++..+
T Consensus 85 ~------~~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 85 K------PKPDTDVVVSNAALQWV----PEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred C------CCCCceEEEEehhhhhC----CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 3 35789999999999998 5678999999999999999998754
No 30
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.73 E-value=2.7e-17 Score=112.51 Aligned_cols=96 Identities=26% Similarity=0.489 Sum_probs=78.7
Q ss_pred EEEecCCCchhHHHHHhhc----CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 88 VLDLACGKGGDLIKWDKAK----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 88 iLDiGcG~G~~~~~l~~~~----~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
|||+|||+|..+..+.... ..+++|+|+|+.|++.++++... ...+++++++|+.+++. ..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~----------~~~~~~~~~~D~~~l~~-----~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE----------DGPKVRFVQADARDLPF-----SD 65 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH----------TTTTSEEEESCTTCHHH-----HS
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh----------cCCceEEEECCHhHCcc-----cC
Confidence 7999999999999987643 26899999999999999999862 12368999999988765 46
Q ss_pred CCeeEEEEcc-ccccccCCHHHHHHHHHHHHhhccCCe
Q 027388 164 APFDICSCQF-AMHYSWSTEARARRALANVSALLRPGG 200 (224)
Q Consensus 164 ~~~D~i~~~~-~l~~~~~~~~~~~~~l~~~~~~lk~gG 200 (224)
++||+|++.+ +++|+ +.++...+++++.++|+|||
T Consensus 66 ~~~D~v~~~~~~~~~~--~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 66 GKFDLVVCSGLSLHHL--SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSEEEEEE-TTGGGGS--SHHHHHHHHHHHHHTEEEEE
T ss_pred CCeeEEEEcCCccCCC--CHHHHHHHHHHHHHHhCCCC
Confidence 7999999955 48887 77899999999999999998
No 31
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.72 E-value=5.5e-17 Score=129.40 Aligned_cols=109 Identities=20% Similarity=0.358 Sum_probs=90.6
Q ss_pred HHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (224)
Q Consensus 76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (224)
++..+...++.+|||||||+|.++..++.. ...+++|+|+|+.|++.++++.. ++.++.+|+.+.
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~--------------~~~~~~~d~~~~ 88 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP--------------DCQFVEADIASW 88 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC--------------CCeEEECchhcc
Confidence 444444567889999999999999988765 35689999999999999998754 378889998765
Q ss_pred ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
. ...+||+|+++.+++|+ .+...+++++.++|+|||.+++.+++
T Consensus 89 ~------~~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 89 Q------PPQALDLIFANASLQWL----PDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred C------CCCCccEEEEccChhhC----CCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 3 24689999999999998 56789999999999999999998653
No 32
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.72 E-value=7.8e-17 Score=123.15 Aligned_cols=105 Identities=22% Similarity=0.239 Sum_probs=84.0
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
...++.+|||+|||+|.++..+++.+ ..|+++|+|+.+++.++++... .++ ++.+..+|+...+.
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~--------~~~--~v~~~~~d~~~~~~---- 91 (195)
T TIGR00477 27 KTVAPCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKAR--------ENL--PLRTDAYDINAAAL---- 91 (195)
T ss_pred ccCCCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHH--------hCC--CceeEeccchhccc----
Confidence 34467899999999999999988654 5899999999999999887651 122 36677777755443
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
.++||+|+++.+++++ +..+...+++.+.+.|+|||++++
T Consensus 92 --~~~fD~I~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 92 --NEDYDFIFSTVVFMFL--QAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred --cCCCCEEEEecccccC--CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 3579999999999887 556788999999999999998554
No 33
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.72 E-value=4.7e-16 Score=121.11 Aligned_cols=139 Identities=21% Similarity=0.401 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcC--CeEEEEe
Q 027388 37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGID 114 (224)
Q Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~gvD 114 (224)
.++|+.++.+|+...... .......|...++......++.+|||+|||+|.++..++.... .+++++|
T Consensus 2 ~~~~~~~~~~y~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD 71 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLL----------SFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVD 71 (223)
T ss_pred HhHHHHHHhhhhHHHHHH----------hcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEE
Confidence 467888999998542211 1122334555555555555788999999999999998876654 4899999
Q ss_pred CChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHh
Q 027388 115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA 194 (224)
Q Consensus 115 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~ 194 (224)
+++.+++.++++.. ...++.+..+|+.+.+. ..+.||+|++..++++. .++..+++++.+
T Consensus 72 ~~~~~~~~~~~~~~-----------~~~~i~~~~~d~~~~~~-----~~~~~D~i~~~~~~~~~----~~~~~~l~~~~~ 131 (223)
T TIGR01934 72 FSSEMLEVAKKKSE-----------LPLNIEFIQADAEALPF-----EDNSFDAVTIAFGLRNV----TDIQKALREMYR 131 (223)
T ss_pred CCHHHHHHHHHHhc-----------cCCCceEEecchhcCCC-----CCCcEEEEEEeeeeCCc----ccHHHHHHHHHH
Confidence 99999999988754 13458899999887664 45789999999999876 678899999999
Q ss_pred hccCCeEEEEE
Q 027388 195 LLRPGGTFIGT 205 (224)
Q Consensus 195 ~lk~gG~li~~ 205 (224)
.|+|||.+++.
T Consensus 132 ~L~~gG~l~~~ 142 (223)
T TIGR01934 132 VLKPGGRLVIL 142 (223)
T ss_pred HcCCCcEEEEE
Confidence 99999999874
No 34
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.71 E-value=1.3e-16 Score=117.95 Aligned_cols=99 Identities=27% Similarity=0.432 Sum_probs=79.2
Q ss_pred hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..++.+|||+|||+|.++..+...+. +++|+|+++.+++. .. +.....+......
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~--~~-----------------~~~~~~~~~~~~~----- 74 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK--RN-----------------VVFDNFDAQDPPF----- 74 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH--TT-----------------SEEEEEECHTHHC-----
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh--hh-----------------hhhhhhhhhhhhc-----
Confidence 46788999999999999998865444 99999999999988 11 2222222222222
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~ 209 (224)
+.+.||+|+|+.+++|+ +++..+++++.++|||||++++.+++.
T Consensus 75 ~~~~fD~i~~~~~l~~~----~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHL----PDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HSSSEEEEEEESSGGGS----SHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred cccchhhHhhHHHHhhc----ccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 46899999999999999 579999999999999999999998864
No 35
>PRK08317 hypothetical protein; Provisional
Probab=99.71 E-value=5.6e-16 Score=121.87 Aligned_cols=113 Identities=27% Similarity=0.427 Sum_probs=92.9
Q ss_pred HHHHHhhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (224)
Q Consensus 76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 153 (224)
++......++.+|||+|||+|.++..++... ..+++++|+|+.+++.++++.. ....++.+..+|+..
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~----------~~~~~~~~~~~d~~~ 80 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA----------GLGPNVEFVRGDADG 80 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh----------CCCCceEEEeccccc
Confidence 4444556778899999999999999887653 4689999999999999988733 224468899999887
Q ss_pred cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
.+. ..+.||+|++..+++++ .++..+++++.++|+|||.+++..+
T Consensus 81 ~~~-----~~~~~D~v~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 81 LPF-----PDGSFDAVRSDRVLQHL----EDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCC-----CCCCceEEEEechhhcc----CCHHHHHHHHHHHhcCCcEEEEEec
Confidence 665 46789999999999987 6688999999999999999988654
No 36
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.70 E-value=2.6e-16 Score=123.78 Aligned_cols=105 Identities=25% Similarity=0.475 Sum_probs=89.0
Q ss_pred cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..+.+|||+|||+|.++..++... ..+++++|+++.+++.++++.. . ++.++.+|+.+.+.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------------~-~~~~~~~d~~~~~~----- 94 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------------E-NVQFICGDAEKLPL----- 94 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------------C-CCeEEecchhhCCC-----
Confidence 345789999999999999887653 3568999999999999988764 1 47889999987765
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~ 209 (224)
..++||+|++..+++|+ .++..++.++.++|+|||.+++..+..
T Consensus 95 ~~~~fD~vi~~~~l~~~----~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 95 EDSSFDLIVSNLALQWC----DDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred CCCceeEEEEhhhhhhc----cCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 46789999999999987 678899999999999999999987654
No 37
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.70 E-value=3.4e-16 Score=114.03 Aligned_cols=142 Identities=23% Similarity=0.324 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHHHhhcCCC-eEEEecCCCchhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCee
Q 027388 68 KLNNWIKSVLVQLYARRGD-VVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR 145 (224)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~-~iLDiGcG~G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~ 145 (224)
++..|+..........+.. +|||+|||+|.++..|++..+. .++|||.|+.+++.|+..+. ..+..+.|+
T Consensus 50 riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe--------~~~~~n~I~ 121 (227)
T KOG1271|consen 50 RIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAE--------RDGFSNEIR 121 (227)
T ss_pred HHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHH--------hcCCCccee
Confidence 4455655554432334444 9999999999999999987655 49999999999999987766 345566699
Q ss_pred EEeccccccccccccCCCCCeeEEEEcccccccc---C-CHHHHHHHHHHHHhhccCCeEEEEEeCCh--HHHHHHhhhc
Q 027388 146 LICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW---S-TEARARRALANVSALLRPGGTFIGTMPDA--NVIIKKLREE 219 (224)
Q Consensus 146 ~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~---~-~~~~~~~~l~~~~~~lk~gG~li~~~~~~--~~~~~~~~~~ 219 (224)
|.+.|+..-.. ..++||+|.--+.+.-+- + ....+..++..+.++|+|||+++|+..|. +.+.+.+.+.
T Consensus 122 f~q~DI~~~~~-----~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 122 FQQLDITDPDF-----LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENF 196 (227)
T ss_pred EEEeeccCCcc-----cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcC
Confidence 99999976544 468999998555433221 1 11223667899999999999999998885 8899999888
Q ss_pred ccc
Q 027388 220 HFC 222 (224)
Q Consensus 220 gf~ 222 (224)
||.
T Consensus 197 ~f~ 199 (227)
T KOG1271|consen 197 NFE 199 (227)
T ss_pred CeE
Confidence 764
No 38
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.70 E-value=2.1e-16 Score=123.46 Aligned_cols=119 Identities=20% Similarity=0.217 Sum_probs=96.4
Q ss_pred CeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388 86 DVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (224)
++|||||||+|.++..+++.. ..+++|+|+|+.+++.+++++. ..++..++.++.+|+...+. .+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~--------~~gl~~~i~~~~~d~~~~~~------~~ 66 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIR--------ALGLQGRIRIFYRDSAKDPF------PD 66 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--------hcCCCcceEEEecccccCCC------CC
Confidence 479999999999999887654 4689999999999999999876 23456678999999866543 46
Q ss_pred CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC------------------hHHHHHHhhhcccc
Q 027388 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD------------------ANVIIKKLREEHFC 222 (224)
Q Consensus 165 ~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~------------------~~~~~~~~~~~gf~ 222 (224)
.||+|++..+++|+ .+...+++++.++|+|||.+++..+. ...+...+.+.||.
T Consensus 67 ~fD~I~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~ 138 (224)
T smart00828 67 TYDLVFGFEVIHHI----KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLR 138 (224)
T ss_pred CCCEeehHHHHHhC----CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCe
Confidence 89999999999988 56789999999999999999986431 24466677777764
No 39
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.70 E-value=6.2e-16 Score=118.73 Aligned_cols=100 Identities=14% Similarity=0.183 Sum_probs=82.1
Q ss_pred hcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
..++.+|||+|||+|.++..+... ...+++|+|+|+.+++.|+++.. ++.+.++|+.+ +.
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--------------~~~~~~~d~~~-~~---- 101 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--------------NINIIQGSLFD-PF---- 101 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--------------CCcEEEeeccC-CC----
Confidence 356789999999999999988765 45789999999999999988654 36778888766 44
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
+.++||+|++..+++|+ +.++...+++++.++++ +.+++.
T Consensus 102 -~~~sfD~V~~~~vL~hl--~p~~~~~~l~el~r~~~--~~v~i~ 141 (204)
T TIGR03587 102 -KDNFFDLVLTKGVLIHI--NPDNLPTAYRELYRCSN--RYILIA 141 (204)
T ss_pred -CCCCEEEEEECChhhhC--CHHHHHHHHHHHHhhcC--cEEEEE
Confidence 57899999999999998 56788999999999983 455553
No 40
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.68 E-value=8.6e-16 Score=114.41 Aligned_cols=109 Identities=23% Similarity=0.297 Sum_probs=85.3
Q ss_pred HhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
+....-.++||+|||.|.++..|+.. ...++++|+|+..++.|++++.. ..+|.+.+.++.+..
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~-----------~~~V~~~~~dvp~~~---- 102 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG-----------LPHVEWIQADVPEFW---- 102 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT------------SSEEEEES-TTT------
T ss_pred cCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC-----------CCCeEEEECcCCCCC----
Confidence 44445578999999999999999754 46899999999999999999872 246999999987653
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
+.+.||+|+++.+++|+ +..+++..++..+...|+|||.|++.+.
T Consensus 103 --P~~~FDLIV~SEVlYYL-~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 103 --PEGRFDLIVLSEVLYYL-DDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp ---SS-EEEEEEES-GGGS-SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred --CCCCeeEEEEehHhHcC-CCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 57899999999999987 4457899999999999999999999754
No 41
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.68 E-value=6.6e-16 Score=124.09 Aligned_cols=106 Identities=21% Similarity=0.375 Sum_probs=86.8
Q ss_pred hcCCCeEEEecCCCchhHHHHHhh-c-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~-~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
+.++.+|||+|||+|..+..++.. . ..+++++|+++.+++.|+++... ... .++.++.+|+..++.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~--------~g~-~~v~~~~~d~~~l~~--- 142 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK--------AGY-TNVEFRLGEIEALPV--- 142 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH--------cCC-CCEEEEEcchhhCCC---
Confidence 467899999999999887766543 2 34799999999999999998652 122 358899999987765
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
+.+.||+|+++.++++. .+...+++++.++|||||+|++.
T Consensus 143 --~~~~fD~Vi~~~v~~~~----~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 143 --ADNSVDVIISNCVINLS----PDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred --CCCceeEEEEcCcccCC----CCHHHHHHHHHHHcCCCcEEEEE
Confidence 46799999999999876 56678999999999999999985
No 42
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.68 E-value=5.7e-16 Score=116.49 Aligned_cols=106 Identities=16% Similarity=0.269 Sum_probs=84.6
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
...++.++||+|||.|+.+..++..+. .|+++|.|+..++.+++.... . ...++..+.|+.+...
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~--------~--~l~i~~~~~Dl~~~~~---- 91 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEE--------E--GLDIRTRVADLNDFDF---- 91 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHH--------T--T-TEEEEE-BGCCBS-----
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhh--------c--CceeEEEEecchhccc----
Confidence 344678999999999999999986666 899999999999998877652 1 3348899999887765
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
...||+|++..+++|+ ..+....++..+...++|||++++.
T Consensus 92 --~~~yD~I~st~v~~fL--~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 92 --PEEYDFIVSTVVFMFL--QRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp --TTTEEEEEEESSGGGS---GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred --cCCcCEEEEEEEeccC--CHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 4789999999999988 6667889999999999999998874
No 43
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.68 E-value=1.9e-16 Score=118.44 Aligned_cols=109 Identities=22% Similarity=0.326 Sum_probs=95.4
Q ss_pred HHHHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (224)
Q Consensus 76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (224)
++.+.......+|.|+|||+|..+..+++.. ...++|+|-|+.|++.|++++. +++|..+|+.+.
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp--------------~~~f~~aDl~~w 87 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP--------------DATFEEADLRTW 87 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC--------------CCceecccHhhc
Confidence 4555666788999999999999999888764 4578899999999999998876 589999999877
Q ss_pred ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
. +...+|+++++-+++|+ ++-..+|.++...|.|||+|-+.+|+
T Consensus 88 ~------p~~~~dllfaNAvlqWl----pdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 88 K------PEQPTDLLFANAVLQWL----PDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred C------CCCccchhhhhhhhhhc----cccHHHHHHHHHhhCCCceEEEECCC
Confidence 5 46899999999999999 67788999999999999999999885
No 44
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.67 E-value=8.9e-16 Score=124.14 Aligned_cols=102 Identities=18% Similarity=0.257 Sum_probs=84.9
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.++++... .++ ++.+...|+..... .
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~--------~~l--~v~~~~~D~~~~~~------~ 182 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEK--------ENL--NIRTGLYDINSASI------Q 182 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHH--------cCC--ceEEEEechhcccc------c
Confidence 45699999999999999987654 5999999999999999988762 222 57888888765443 5
Q ss_pred CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
++||+|++..+++++ +.++...+++++.+.|+|||++++
T Consensus 183 ~~fD~I~~~~vl~~l--~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 183 EEYDFILSTVVLMFL--NRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred CCccEEEEcchhhhC--CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 789999999999987 567889999999999999999665
No 45
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.66 E-value=1.8e-15 Score=126.49 Aligned_cols=109 Identities=21% Similarity=0.251 Sum_probs=90.3
Q ss_pred HHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (224)
Q Consensus 76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (224)
++..+...++.+|||||||+|.++..++.....+|+|+|+|+.+++.|+++.. ...+++..+|+..+
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~------------~l~v~~~~~D~~~l- 225 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA------------GLPVEIRLQDYRDL- 225 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc------------cCeEEEEECchhhc-
Confidence 34445567889999999999999998876656699999999999999999875 22377778886543
Q ss_pred cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
.++||+|++..+++|+ +...+..+++++.++|+|||.+++.+
T Consensus 226 -------~~~fD~Ivs~~~~ehv--g~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 226 -------NGQFDRIVSVGMFEHV--GPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred -------CCCCCEEEEeCchhhC--ChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3689999999999987 56678899999999999999999864
No 46
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.66 E-value=4.9e-15 Score=111.95 Aligned_cols=105 Identities=22% Similarity=0.237 Sum_probs=84.1
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
..+++.+|||+|||+|..+..++.. ...+++++|+|+.+++.|+++... .++. +++++++|+.++..
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~--------~~l~-~i~~~~~d~~~~~~--- 109 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE--------LGLK-NVTVVHGRAEEFGQ--- 109 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH--------cCCC-CEEEEeccHhhCCC---
Confidence 3445889999999999988887753 456899999999999999998773 2333 38999999877542
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
.++||+|++... .++..+++.+.+.|+|||++++..+.
T Consensus 110 ---~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 110 ---EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred ---CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 468999998752 34578999999999999999887553
No 47
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.65 E-value=4.6e-17 Score=110.97 Aligned_cols=98 Identities=24% Similarity=0.338 Sum_probs=61.6
Q ss_pred EEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCee
Q 027388 89 LDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFD 167 (224)
Q Consensus 89 LDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D 167 (224)
||||||+|.++..++.. ...+++++|+|+.|++.+++++... ...+......+..+..... ..++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~---------~~~~~~~~~~~~~~~~~~~---~~~~fD 68 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL---------GNDNFERLRFDVLDLFDYD---PPESFD 68 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC---------T---EEEEE--SSS---CC---C----S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc---------CCcceeEEEeecCChhhcc---cccccc
Confidence 79999999999998865 4568999999999998888887621 1112333333333222100 136999
Q ss_pred EEEEccccccccCCHHHHHHHHHHHHhhccCCeEE
Q 027388 168 ICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202 (224)
Q Consensus 168 ~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~l 202 (224)
+|++..+++|+ +++..+++++.+.|+|||+|
T Consensus 69 ~V~~~~vl~~l----~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 69 LVVASNVLHHL----EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EEEEE-TTS------S-HHHHHHHHTTT-TSS-EE
T ss_pred eehhhhhHhhh----hhHHHHHHHHHHHcCCCCCC
Confidence 99999999998 78889999999999999986
No 48
>PRK06922 hypothetical protein; Provisional
Probab=99.65 E-value=2.1e-15 Score=130.81 Aligned_cols=111 Identities=22% Similarity=0.308 Sum_probs=88.1
Q ss_pred cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
.++.+|||+|||+|..+..++.. ...+++|+|+|+.|++.|+++... ...++.++++|+.+++. ..
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~----------~g~~ie~I~gDa~dLp~---~f 483 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN----------EGRSWNVIKGDAINLSS---SF 483 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh----------cCCCeEEEEcchHhCcc---cc
Confidence 46789999999999988877654 456999999999999999987651 12357888999877551 01
Q ss_pred CCCCeeEEEEccccccccC---------CHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 162 DDAPFDICSCQFAMHYSWS---------TEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~---------~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
++++||+|+++.++|+++. ...++..+++++.++|||||.+++..
T Consensus 484 edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 484 EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 4678999999999887532 23578999999999999999999874
No 49
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.65 E-value=1.8e-15 Score=120.65 Aligned_cols=117 Identities=16% Similarity=0.213 Sum_probs=86.4
Q ss_pred CCCeEEEecCCCch----hHHHHHhhc------CCeEEEEeCChhHHHHHHHhccCCccc------------------cc
Q 027388 84 RGDVVLDLACGKGG----DLIKWDKAK------IGYYVGIDIAEGSIEDCRTRYNGDADH------------------HQ 135 (224)
Q Consensus 84 ~~~~iLDiGcG~G~----~~~~l~~~~------~~~~~gvD~s~~~~~~a~~~~~~~~~~------------------~~ 135 (224)
++.+|||+|||+|. +++.+++.. ..+++|+|+|+.|++.|++........ ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999997 344443321 347999999999999999865310000 00
Q ss_pred ccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 136 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
....+..++.|.+.|+.+.+. +.++||+|+|.++++|+ +.++...+++++.+.|+|||+|++...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~-----~~~~fD~I~crnvl~yf--~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP-----PLGDFDLIFCRNVLIYF--DEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC-----ccCCCCEEEechhHHhC--CHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 001123468899999987654 46899999999999998 667888999999999999999998643
No 50
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.65 E-value=2.5e-15 Score=111.73 Aligned_cols=104 Identities=22% Similarity=0.351 Sum_probs=87.2
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCee-EEeccccccc-cccccC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR-LICGDCYEVH-LDKVLA 161 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~~ 161 (224)
....+||+|||||.....+-.....+|+++|++++|-+.+.+.+... -..++. |++++.++++ +
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~---------k~~~~~~fvva~ge~l~~l----- 141 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK---------KPLQVERFVVADGENLPQL----- 141 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc---------cCcceEEEEeechhcCccc-----
Confidence 34468999999999888774446779999999999999999998732 233465 9999999887 4
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.+.++|.|++..++. +.+++.+.|+++.++|+|||++++-
T Consensus 142 ~d~s~DtVV~TlvLC----Sve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 142 ADGSYDTVVCTLVLC----SVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred ccCCeeeEEEEEEEe----ccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 579999999999886 5589999999999999999998875
No 51
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.64 E-value=5.7e-15 Score=113.99 Aligned_cols=128 Identities=21% Similarity=0.212 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccc----ccccccCCCCee
Q 027388 70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH----HQRRKKFSFPAR 145 (224)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~----~~~~~~~~~~v~ 145 (224)
...+...+..+...++.+|||+|||.|+.+..++.. +..|+|||+|+.+++.+.+...-.... +.+ ..-..+++
T Consensus 20 ~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~-~~~~~~v~ 97 (213)
T TIGR03840 20 NPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFT-RYRAGNIE 97 (213)
T ss_pred CHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccce-eeecCceE
Confidence 334444444433346689999999999999999854 448999999999999864422100000 000 00134589
Q ss_pred EEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 146 LICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 146 ~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
++++|+.+++.. ..+.||.|+-..+++++ +.+....++..+.++|+|||++++.
T Consensus 98 ~~~~D~~~~~~~----~~~~fD~i~D~~~~~~l--~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 98 IFCGDFFALTAA----DLGPVDAVYDRAALIAL--PEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred EEEccCCCCCcc----cCCCcCEEEechhhccC--CHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 999999877531 13679999998888888 7788899999999999999975543
No 52
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.64 E-value=2.4e-15 Score=115.58 Aligned_cols=124 Identities=21% Similarity=0.289 Sum_probs=93.5
Q ss_pred CCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc-cccc--cccc
Q 027388 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVH--LDKV 159 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~ 159 (224)
++.+|||+|||+|.++..++.. ....++++|+|+.+++.+++++.. ..+ .++.++++|+ ..++ .
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~--------~~~-~~v~~~~~d~~~~l~~~~--- 107 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEE--------EGL-TNLRLLCGDAVEVLLDMF--- 107 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHH--------cCC-CCEEEEecCHHHHHHHHc---
Confidence 6789999999999999988765 345899999999999999988762 222 4589999998 5554 3
Q ss_pred cCCCCCeeEEEEccccccccC----CHHHHHHHHHHHHhhccCCeEEEEEeCChH---HHHHHhhhccc
Q 027388 160 LADDAPFDICSCQFAMHYSWS----TEARARRALANVSALLRPGGTFIGTMPDAN---VIIKKLREEHF 221 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~----~~~~~~~~l~~~~~~lk~gG~li~~~~~~~---~~~~~~~~~gf 221 (224)
+.+.||+|++++...+... .......+++++.++|+|||.|++.+++.. .+.+.+++.|+
T Consensus 108 --~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 108 --PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGG 174 (202)
T ss_pred --CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcc
Confidence 4578999998765433210 001247799999999999999999988765 45556666664
No 53
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.64 E-value=6.4e-15 Score=111.18 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=94.9
Q ss_pred hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..++.+|||+|||+|.++..++.... +++++|+|+.+++.+++++... ..++.++++|+.+..
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~----------~~~~~~~~~d~~~~~------ 79 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLN----------NVGLDVVMTDLFKGV------ 79 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHc----------CCceEEEEccccccc------
Confidence 35668899999999999998876554 8999999999999999987621 234788888876532
Q ss_pred CCCCeeEEEEccccccccCC-----------------HHHHHHHHHHHHhhccCCeEEEEEeC---ChHHHHHHhhhccc
Q 027388 162 DDAPFDICSCQFAMHYSWST-----------------EARARRALANVSALLRPGGTFIGTMP---DANVIIKKLREEHF 221 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~-----------------~~~~~~~l~~~~~~lk~gG~li~~~~---~~~~~~~~~~~~gf 221 (224)
.++||+|+++..+++.... ......++.++.++|+|||.+++..+ +...+.+.+.+.||
T Consensus 80 -~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf 158 (179)
T TIGR00537 80 -RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGF 158 (179)
T ss_pred -CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCC
Confidence 3589999998776544110 11256789999999999999888644 25688899999888
Q ss_pred c
Q 027388 222 C 222 (224)
Q Consensus 222 ~ 222 (224)
.
T Consensus 159 ~ 159 (179)
T TIGR00537 159 R 159 (179)
T ss_pred e
Confidence 5
No 54
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.63 E-value=6.1e-15 Score=116.70 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=94.8
Q ss_pred HHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHH--hccCCcccccccccCCCCeeEEecccccccc
Q 027388 79 QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT--RYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (224)
Q Consensus 79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~--~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 156 (224)
.+..-.+++|||||||+|.++..++..+...|+|+|++....-.... ++. +....+.++...+++++.
T Consensus 110 ~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~l----------g~~~~~~~lplgvE~Lp~ 179 (315)
T PF08003_consen 110 HLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFL----------GQDPPVFELPLGVEDLPN 179 (315)
T ss_pred hhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHh----------CCCccEEEcCcchhhccc
Confidence 33345899999999999999999988888899999999977655322 222 011122333334455442
Q ss_pred ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE--------------------------eCChH
Q 027388 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT--------------------------MPDAN 210 (224)
Q Consensus 157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~--------------------------~~~~~ 210 (224)
.+.||+|+|.+||+|. .++...|..++..|++||.|++. .|...
T Consensus 180 ------~~~FDtVF~MGVLYHr----r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~ 249 (315)
T PF08003_consen 180 ------LGAFDTVFSMGVLYHR----RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVA 249 (315)
T ss_pred ------cCCcCEEEEeeehhcc----CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHH
Confidence 5789999999999998 78999999999999999999974 44567
Q ss_pred HHHHHhhhccccc
Q 027388 211 VIIKKLREEHFCH 223 (224)
Q Consensus 211 ~~~~~~~~~gf~~ 223 (224)
.+...++..||..
T Consensus 250 ~L~~wl~r~gF~~ 262 (315)
T PF08003_consen 250 ALKNWLERAGFKD 262 (315)
T ss_pred HHHHHHHHcCCce
Confidence 8888898999863
No 55
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.62 E-value=1.7e-14 Score=108.81 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=80.4
Q ss_pred CCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
++.+|||+|||+|.++..++... ..+++++|+|+.+++.++++... .++. +++++++|+.++. .
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~--------~~~~-~i~~i~~d~~~~~------~ 106 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE--------LGLN-NVEIVNGRAEDFQ------H 106 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH--------hCCC-CeEEEecchhhcc------c
Confidence 58899999999999888876543 45899999999999999888762 2332 5899999998753 2
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
.++||+|++.. ++ +...++..+.++|+|||.+++...
T Consensus 107 ~~~fD~I~s~~-~~-------~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 107 EEQFDVITSRA-LA-------SLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred cCCccEEEehh-hh-------CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 57899999875 33 345678888999999999998755
No 56
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.62 E-value=2.5e-14 Score=111.40 Aligned_cols=115 Identities=23% Similarity=0.289 Sum_probs=89.0
Q ss_pred HHHHHHHHHh--hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec
Q 027388 72 WIKSVLVQLY--ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (224)
Q Consensus 72 ~~~~~~~~~~--~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~ 149 (224)
++..++..+. ..++.+|||+|||+|.++..++.. ..+++|+|+|+.+++.|++++.. .....++.+.++
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~--------~~~~~~i~~~~~ 111 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQG--------RDVAGNVEFEVN 111 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHh--------cCCCCceEEEEC
Confidence 3333444433 356889999999999999988754 45899999999999999998762 222346889999
Q ss_pred cccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 150 d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
|+...+ ++||+|++..+++|+ +..+...++.++.+++++++++.+.
T Consensus 112 d~~~~~--------~~fD~ii~~~~l~~~--~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 112 DLLSLC--------GEFDIVVCMDVLIHY--PASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred ChhhCC--------CCcCEEEEhhHHHhC--CHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 986542 689999999998886 5567888999999999877766653
No 57
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.61 E-value=2.2e-14 Score=109.98 Aligned_cols=125 Identities=20% Similarity=0.263 Sum_probs=95.7
Q ss_pred HHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388 78 VQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (224)
Q Consensus 78 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (224)
..+...++.+|||+|||+|.++..++.. ...+++++|+++.+++.+++++.. .++..++.++++|+.+..
T Consensus 34 ~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~--------~g~~~~v~~~~~d~~~~l 105 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK--------FGVLNNIVLIKGEAPEIL 105 (198)
T ss_pred HHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------hCCCCCeEEEEechhhhH
Confidence 3445678899999999999999987654 346899999999999999988762 233356888888886532
Q ss_pred cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh---HHHHHHhhhccc
Q 027388 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA---NVIIKKLREEHF 221 (224)
Q Consensus 156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~---~~~~~~~~~~gf 221 (224)
.. ..+.||+|++.... .++..+++.+.+.|+|||.+++..... ..+...+++.||
T Consensus 106 ~~----~~~~~D~V~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 106 FT----INEKFDRIFIGGGS-------EKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF 163 (198)
T ss_pred hh----cCCCCCEEEECCCc-------ccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC
Confidence 11 23689999986422 456788999999999999999877665 456667777787
No 58
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.61 E-value=3.7e-14 Score=106.04 Aligned_cols=115 Identities=21% Similarity=0.315 Sum_probs=86.2
Q ss_pred HHhhcCCCeEEEecCCCchhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388 79 QLYARRGDVVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (224)
Q Consensus 79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (224)
.+...+..+|||+|||+|.++..++..... +++++|+++.+++.+++++.. ..+.. ++++.+|+.+..
T Consensus 26 ~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~--------n~~~~-v~~~~~d~~~~~-- 94 (170)
T PF05175_consen 26 NLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER--------NGLEN-VEVVQSDLFEAL-- 94 (170)
T ss_dssp HHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH--------TTCTT-EEEEESSTTTTC--
T ss_pred HHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh--------cCccc-cccccccccccc--
Confidence 333347889999999999999998876554 699999999999999999873 33343 889999986533
Q ss_pred cccCCCCCeeEEEEccccccccC-CHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 158 KVLADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 158 ~~~~~~~~~D~i~~~~~l~~~~~-~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
...+||+|+++-.++.-.. ...-...++....+.|+|||.|++....
T Consensus 95 ----~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 95 ----PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp ----CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred ----cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 3589999999977654311 1135788999999999999998765443
No 59
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.61 E-value=1.5e-14 Score=116.15 Aligned_cols=101 Identities=20% Similarity=0.360 Sum_probs=80.7
Q ss_pred cCCCeEEEecCCCchhHHHHHhhc----CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAK----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~----~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
....+|||+|||+|.++..++... ...++|+|+|+.+++.|+++.. ++.+.++|+.++++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~--------------~~~~~~~d~~~lp~-- 147 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP--------------QVTFCVASSHRLPF-- 147 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC--------------CCeEEEeecccCCC--
Confidence 355789999999999998886542 2368999999999999987754 47889999888776
Q ss_pred ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHH
Q 027388 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~ 213 (224)
.+++||+|++..+. ..+.++.++|+|||+|++.+|+...+.
T Consensus 148 ---~~~sfD~I~~~~~~-----------~~~~e~~rvLkpgG~li~~~p~~~~l~ 188 (272)
T PRK11088 148 ---ADQSLDAIIRIYAP-----------CKAEELARVVKPGGIVITVTPGPRHLF 188 (272)
T ss_pred ---cCCceeEEEEecCC-----------CCHHHHHhhccCCCEEEEEeCCCcchH
Confidence 56899999986542 135788999999999999988765443
No 60
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.61 E-value=3.6e-14 Score=111.47 Aligned_cols=108 Identities=20% Similarity=0.253 Sum_probs=86.3
Q ss_pred hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..++.+|||||||+|.++..++.. ...++++|+++.+++.+++++.. ....+.+..+++...+..
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~~~~---- 110 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALE----------SGLKIDYRQTTAEELAAE---- 110 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHH----------cCCceEEEecCHHHhhhh----
Confidence 456789999999999998888754 45899999999999999887651 122467777877665421
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
..+.||+|++..+++++ .++..+++.+.+.|+|||.+++..++
T Consensus 111 ~~~~fD~Ii~~~~l~~~----~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHV----PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred cCCCccEEEEhhHhhcc----CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 24789999999999887 56778999999999999999987653
No 61
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.61 E-value=3.1e-14 Score=110.29 Aligned_cols=130 Identities=19% Similarity=0.199 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccc---ccccccCCCCe
Q 027388 68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH---HQRRKKFSFPA 144 (224)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~---~~~~~~~~~~v 144 (224)
..+.++...+..+...++.+|||+|||.|+.+..++.. +..|+|||+|+.+++.+.+........ .........++
T Consensus 21 ~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v 99 (218)
T PRK13255 21 EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEI 99 (218)
T ss_pred CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCce
Confidence 34445555554444456789999999999999999854 458999999999999874322100000 00001123568
Q ss_pred eEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 145 ~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
++.++|+.++... ....||+|+-..+++++ +......++..+.++|+|||++++
T Consensus 100 ~~~~~D~~~l~~~----~~~~fd~v~D~~~~~~l--~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 100 TIYCGDFFALTAA----DLADVDAVYDRAALIAL--PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEEECcccCCCcc----cCCCeeEEEehHhHhhC--CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 8999999877532 23589999998888888 778899999999999999996443
No 62
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.61 E-value=3.2e-14 Score=108.08 Aligned_cols=122 Identities=15% Similarity=0.080 Sum_probs=93.6
Q ss_pred HHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388 78 VQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (224)
Q Consensus 78 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 156 (224)
..+...++.+|||+|||+|.++..++... ..+++++|+++.+++.+++++.. ..+ .+++++++|+.. ..
T Consensus 25 ~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~--------~~~-~~i~~~~~d~~~-~~ 94 (187)
T PRK08287 25 SKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR--------FGC-GNIDIIPGEAPI-EL 94 (187)
T ss_pred HhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------hCC-CCeEEEecCchh-hc
Confidence 34445678899999999999999887653 35899999999999999988752 222 247888888632 22
Q ss_pred ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe---CChHHHHHHhhhcccc
Q 027388 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM---PDANVIIKKLREEHFC 222 (224)
Q Consensus 157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~---~~~~~~~~~~~~~gf~ 222 (224)
.++||+|++.....+ ...++..+.+.|+|||++++.. .+...+...+.+.||.
T Consensus 95 ------~~~~D~v~~~~~~~~-------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 95 ------PGKADAIFIGGSGGN-------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred ------CcCCCEEEECCCccC-------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 357999998765443 3567889999999999998864 3567788888888874
No 63
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.60 E-value=2.9e-14 Score=100.76 Aligned_cols=112 Identities=21% Similarity=0.156 Sum_probs=84.6
Q ss_pred HHHHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (224)
Q Consensus 76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (224)
++..+...++.+|||+|||+|.++..++... ..+++++|+|+.+++.+++++... .. .++.++..|+...
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~-~~~~~~~~~~~~~ 81 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF--------GV-SNIVIVEGDAPEA 81 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh--------CC-CceEEEecccccc
Confidence 3444445567899999999999999988653 468999999999999999887621 22 2478888886642
Q ss_pred ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
... ..+.||+|++..... ...++++.+.+.|+|||.|++...
T Consensus 82 ~~~----~~~~~D~v~~~~~~~-------~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 82 LED----SLPEPDRVFIGGSGG-------LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred Chh----hcCCCCEEEECCcch-------hHHHHHHHHHHHcCCCCEEEEEec
Confidence 210 246899999876543 346899999999999999998753
No 64
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.60 E-value=2.8e-14 Score=108.15 Aligned_cols=122 Identities=11% Similarity=0.122 Sum_probs=91.1
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
...+.||+|+|-|+.+..++...+.+|-.||+.+.+++.|++.+.. .......+++..+.++.. ..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~---------~~~~v~~~~~~gLQ~f~P-----~~ 120 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK---------DNPRVGEFYCVGLQDFTP-----EE 120 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC---------GGCCEEEEEES-GGG---------T
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc---------cCCCcceEEecCHhhccC-----CC
Confidence 4578999999999999988777788999999999999999988762 112224678888777654 45
Q ss_pred CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE------------------eCChHHHHHHhhhccc
Q 027388 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT------------------MPDANVIIKKLREEHF 221 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~------------------~~~~~~~~~~~~~~gf 221 (224)
..||+|++.+++.|+ +..+..++|+++...|+|+|++++. |.....++..|+++|+
T Consensus 121 ~~YDlIW~QW~lghL--TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl 194 (218)
T PF05891_consen 121 GKYDLIWIQWCLGHL--TDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGL 194 (218)
T ss_dssp T-EEEEEEES-GGGS---HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-
T ss_pred CcEeEEEehHhhccC--CHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCC
Confidence 799999999999999 8899999999999999999999984 2234677888888875
No 65
>PLN03075 nicotianamine synthase; Provisional
Probab=99.59 E-value=2.3e-14 Score=114.49 Aligned_cols=110 Identities=11% Similarity=0.038 Sum_probs=88.3
Q ss_pred cCCCeEEEecCCCchhHHHHHh--h-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 83 RRGDVVLDLACGKGGDLIKWDK--A-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~--~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
.++++|+|||||.|.++..++. . ..++++|+|+++.+++.|++.+.. ..++..+++|..+|+.+...
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-------~~gL~~rV~F~~~Da~~~~~--- 191 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-------DPDLSKRMFFHTADVMDVTE--- 191 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-------ccCccCCcEEEECchhhccc---
Confidence 3789999999998865444332 2 445899999999999999999851 14566789999999977532
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
..+.||+|++. +++++ ...++..++.++.+.|+|||+|++.+.
T Consensus 192 --~l~~FDlVF~~-ALi~~--dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 192 --SLKEYDVVFLA-ALVGM--DKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred --ccCCcCEEEEe-ccccc--ccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 24789999999 88876 446889999999999999999999864
No 66
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.59 E-value=3.1e-14 Score=122.99 Aligned_cols=109 Identities=19% Similarity=0.304 Sum_probs=86.8
Q ss_pred HhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
+...++.+|||||||+|.++..++.. ..+++|+|+++.+++.+++... ...++.++++|+......
T Consensus 33 l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~-----------~~~~i~~~~~d~~~~~~~-- 98 (475)
T PLN02336 33 LPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESING-----------HYKNVKFMCADVTSPDLN-- 98 (475)
T ss_pred cCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhc-----------cCCceEEEEecccccccC--
Confidence 33346679999999999999998755 5689999999999998765322 134588999998643211
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.+.++||+|++..+++|+ +.++...+++++.++|+|||++++.
T Consensus 99 -~~~~~fD~I~~~~~l~~l--~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 99 -ISDGSVDLIFSNWLLMYL--SDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred -CCCCCEEEEehhhhHHhC--CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 146799999999999998 5566889999999999999999884
No 67
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.59 E-value=3.4e-14 Score=109.40 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=83.9
Q ss_pred HHHHHhhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (224)
Q Consensus 76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 153 (224)
++..+...++.+|||+|||+|..+..++... .++++++|+++.+++.|++++.. .++..+++++.+|..+
T Consensus 64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~--------~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER--------LGYWGVVEVYHGDGKR 135 (205)
T ss_pred HHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCCCcEEEEECCccc
Confidence 4444455678899999999999988776542 46899999999999999988762 2334468999999865
Q ss_pred cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
... ...+||+|++..++.++ . .++.+.|+|||+|++...
T Consensus 136 ~~~-----~~~~fD~Ii~~~~~~~~----~------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 136 GLE-----KHAPFDAIIVTAAASTI----P------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred CCc-----cCCCccEEEEccCcchh----h------HHHHHhcCcCcEEEEEEc
Confidence 432 34689999999887765 1 367889999999988643
No 68
>PRK14967 putative methyltransferase; Provisional
Probab=99.59 E-value=4.3e-14 Score=110.31 Aligned_cols=133 Identities=21% Similarity=0.251 Sum_probs=94.9
Q ss_pred HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (224)
Q Consensus 73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 152 (224)
+...+......++.+|||+|||+|.++..++.....+++++|+++.+++.+++++... ..++.++++|+.
T Consensus 25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~----------~~~~~~~~~d~~ 94 (223)
T PRK14967 25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA----------GVDVDVRRGDWA 94 (223)
T ss_pred HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh----------CCeeEEEECchh
Confidence 3333433345667899999999999999887655558999999999999999887521 224778888876
Q ss_pred ccccccccCCCCCeeEEEEcccccccc-----------------CCHHHHHHHHHHHHhhccCCeEEEEEeC---ChHHH
Q 027388 153 EVHLDKVLADDAPFDICSCQFAMHYSW-----------------STEARARRALANVSALLRPGGTFIGTMP---DANVI 212 (224)
Q Consensus 153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~-----------------~~~~~~~~~l~~~~~~lk~gG~li~~~~---~~~~~ 212 (224)
+. . ..++||+|+++....... +.......++..+.++|++||.+++... +...+
T Consensus 95 ~~-~-----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~ 168 (223)
T PRK14967 95 RA-V-----EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERT 168 (223)
T ss_pred hh-c-----cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHH
Confidence 53 2 357899999975322110 0112356788999999999999998543 44677
Q ss_pred HHHhhhccc
Q 027388 213 IKKLREEHF 221 (224)
Q Consensus 213 ~~~~~~~gf 221 (224)
...+++.||
T Consensus 169 ~~~l~~~g~ 177 (223)
T PRK14967 169 LTRLSEAGL 177 (223)
T ss_pred HHHHHHCCC
Confidence 778877776
No 69
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.59 E-value=2.1e-14 Score=118.31 Aligned_cols=126 Identities=21% Similarity=0.202 Sum_probs=99.3
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
...++.+|||+|||+|.++..++. ....++|+|+++.|++.++.++.. .++.. +.+.++|+.+++.
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~--------~g~~~-i~~~~~D~~~l~~---- 244 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEH--------YGIED-FFVKRGDATKLPL---- 244 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHH--------hCCCC-CeEEecchhcCCc----
Confidence 456788999999999999887654 456899999999999999988762 23333 7889999988776
Q ss_pred CCCCCeeEEEEcccccccc-----CCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhccc
Q 027388 161 ADDAPFDICSCQFAMHYSW-----STEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHF 221 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~-----~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~gf 221 (224)
..+.||+|+++....... ........++..+.++|+|||++++.+|+...+.+.++++||
T Consensus 245 -~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~~~~g~ 309 (329)
T TIGR01177 245 -SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLAEDAFR 309 (329)
T ss_pred -ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHHhhcCc
Confidence 457899999974322110 011346889999999999999999999988788888899888
No 70
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.58 E-value=1.7e-14 Score=101.18 Aligned_cols=113 Identities=26% Similarity=0.360 Sum_probs=87.0
Q ss_pred CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (224)
|.+|||+|||+|.++..+++....+++++|+++..++.++.++. ...+..+++++++|+.+.... ...+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~--------~~~~~~~~~~~~~D~~~~~~~---~~~~ 69 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLP--------RNGLDDRVEVIVGDARDLPEP---LPDG 69 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCH--------HCTTTTTEEEEESHHHHHHHT---CTTT
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHH--------HccCCceEEEEECchhhchhh---ccCc
Confidence 46899999999999998886665799999999999999999987 344556799999999876510 1578
Q ss_pred CeeEEEEccccccccCC----HHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 165 PFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 165 ~~D~i~~~~~l~~~~~~----~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
+||+|+++-........ .+....+++.+.++|+|||.+++.+|+
T Consensus 70 ~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 70 KFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp -EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred eeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999998765532111 124578999999999999999988764
No 71
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.58 E-value=8.1e-14 Score=113.31 Aligned_cols=105 Identities=16% Similarity=0.214 Sum_probs=76.1
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
++.+|||+|||+|.++..++.. ..+++|+|+|+.|++.++++....... .....++.|...|+..+ .
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~----~~~~~~~~f~~~Dl~~l--------~ 210 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAA----LPPEVLPKFEANDLESL--------S 210 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccc----cccccceEEEEcchhhc--------C
Confidence 5779999999999999998865 458999999999999999987521000 00123467888886432 3
Q ss_pred CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
+.||+|+|..+++|+ +.+....+++.+.+ +.+||.++.
T Consensus 211 ~~fD~Vv~~~vL~H~--p~~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 211 GKYDTVTCLDVLIHY--PQDKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred CCcCEEEEcCEEEec--CHHHHHHHHHHHHh-hcCCEEEEE
Confidence 689999999999887 44455667777765 456666554
No 72
>PRK06202 hypothetical protein; Provisional
Probab=99.58 E-value=4.4e-14 Score=110.94 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=78.4
Q ss_pred cCCCeEEEecCCCchhHHHHHhh----c-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKA----K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~----~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (224)
.++.+|||+|||+|.++..++.. + ..+++|+|+|+.|++.|+++.. ..++.+.+.+...++.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~------------~~~~~~~~~~~~~l~~- 125 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR------------RPGVTFRQAVSDELVA- 125 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc------------cCCCeEEEEecccccc-
Confidence 46779999999999988877642 1 2489999999999999988754 2235666666655544
Q ss_pred cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.+++||+|+++.++||+ +.++...+++++.++++ |.+++.
T Consensus 126 ----~~~~fD~V~~~~~lhh~--~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 126 ----EGERFDVVTSNHFLHHL--DDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred ----cCCCccEEEECCeeecC--ChHHHHHHHHHHHHhcC--eeEEEe
Confidence 35799999999999998 45557789999999998 444443
No 73
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.58 E-value=1.1e-13 Score=108.43 Aligned_cols=102 Identities=25% Similarity=0.273 Sum_probs=79.5
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.++.+|||+|||+|.++..++... ..++|+|+|+.+++.|+++... .+...++.+..+|+.. .
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~~--------~~~~~~i~~~~~d~~~--------~ 124 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPE--------AGLAGNITFEVGDLES--------L 124 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHh--------cCCccCcEEEEcCchh--------c
Confidence 467899999999999999887654 4799999999999999998762 2223468888888432 2
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li 203 (224)
.++||+|++..+++|+ +.+....+++.+.+.+++++++.
T Consensus 125 ~~~fD~v~~~~~l~~~--~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 125 LGRFDTVVCLDVLIHY--PQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred cCCcCEEEEcchhhcC--CHHHHHHHHHHHHhhcCCeEEEE
Confidence 4689999999999886 56678889999988776544443
No 74
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.57 E-value=8.5e-14 Score=113.26 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=83.0
Q ss_pred cCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc-cccccc
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDKV 159 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~ 159 (224)
.++.+|||+|||+|..+..++... ..+|+++|+|+.|++.+.+++.. .....++.++++|+.+ .++...
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~--------~~p~~~v~~i~gD~~~~~~~~~~ 133 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA--------DYPQLEVHGICADFTQPLALPPE 133 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh--------hCCCceEEEEEEcccchhhhhcc
Confidence 466899999999999999888654 46899999999999999888652 1123347788999875 333100
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
. ......++++..+++++ ...+...+|+++.+.|+|||.|++..
T Consensus 134 ~-~~~~~~~~~~gs~~~~~--~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 134 P-AAGRRLGFFPGSTIGNF--TPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred c-ccCCeEEEEecccccCC--CHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 0 01133344555567776 67788999999999999999999863
No 75
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.56 E-value=3.7e-14 Score=108.35 Aligned_cols=127 Identities=20% Similarity=0.333 Sum_probs=91.4
Q ss_pred cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
....++||||||+|.++..++... ...++|+|++..+++.|++++.. .++. ++.++++|+.++... ..
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~--------~~l~-ni~~i~~d~~~~~~~--~~ 83 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANK--------LGLK-NLHVLCGDANELLDK--FF 83 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH--------hCCC-CEEEEccCHHHHHHh--hC
Confidence 356689999999999999988653 45899999999999999988762 2333 699999999765311 01
Q ss_pred CCCCeeEEEEccccccccCCH----HHHHHHHHHHHhhccCCeEEEEEeCChHH---HHHHhhhcc
Q 027388 162 DDAPFDICSCQFAMHYSWSTE----ARARRALANVSALLRPGGTFIGTMPDANV---IIKKLREEH 220 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~----~~~~~~l~~~~~~lk~gG~li~~~~~~~~---~~~~~~~~g 220 (224)
+.+.+|.|++++...|..... -....+++.+.++|||||.|++.+.+... +.+.+.+.+
T Consensus 84 ~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 149 (194)
T TIGR00091 84 PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEND 149 (194)
T ss_pred CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCC
Confidence 346899999886544320000 01257899999999999999999887653 344554443
No 76
>PRK14968 putative methyltransferase; Provisional
Probab=99.55 E-value=2.4e-13 Score=103.13 Aligned_cols=125 Identities=22% Similarity=0.266 Sum_probs=93.6
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCC-eeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP-ARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~ 161 (224)
.++.+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++... .+... +.++++|+.+..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~--------~~~~~~~~~~~~d~~~~~------ 86 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLN--------NIRNNGVEVIRSDLFEPF------ 86 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHc--------CCCCcceEEEeccccccc------
Confidence 57789999999999999988866 679999999999999998887521 22212 778888875532
Q ss_pred CCCCeeEEEEccccccc-----------------cCCHHHHHHHHHHHHhhccCCeEEEEEeC---ChHHHHHHhhhccc
Q 027388 162 DDAPFDICSCQFAMHYS-----------------WSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKLREEHF 221 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~-----------------~~~~~~~~~~l~~~~~~lk~gG~li~~~~---~~~~~~~~~~~~gf 221 (224)
....||+|+++..+... ..+...+..+++++.++|+|||.+++..+ ....+...+.+.||
T Consensus 87 ~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~ 166 (188)
T PRK14968 87 RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGF 166 (188)
T ss_pred cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCC
Confidence 24589999987543220 01133467789999999999999888755 35678889999887
Q ss_pred c
Q 027388 222 C 222 (224)
Q Consensus 222 ~ 222 (224)
.
T Consensus 167 ~ 167 (188)
T PRK14968 167 E 167 (188)
T ss_pred e
Confidence 4
No 77
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.55 E-value=1.4e-13 Score=111.24 Aligned_cols=116 Identities=20% Similarity=0.174 Sum_probs=86.8
Q ss_pred hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..++.+|||+|||+|.++..++..+..+++++|+|+.+++.|++++.. ..+...+.+...+....
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~--------n~~~~~~~~~~~~~~~~------- 221 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL--------NQVSDRLQVKLIYLEQP------- 221 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH--------cCCCcceEEEecccccc-------
Confidence 346789999999999999887766667899999999999999998762 23444455565553221
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC---hHHHHHHhhhc
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD---ANVIIKKLREE 219 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~---~~~~~~~~~~~ 219 (224)
..++||+|+++... .....++.++.++|+|||.++++... ...+.+.+.+.
T Consensus 222 ~~~~fDlVvan~~~-------~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~ 275 (288)
T TIGR00406 222 IEGKADVIVANILA-------EVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG 275 (288)
T ss_pred cCCCceEEEEecCH-------HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc
Confidence 24689999997643 34567899999999999999997553 34555666544
No 78
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.55 E-value=2.6e-13 Score=105.94 Aligned_cols=106 Identities=22% Similarity=0.343 Sum_probs=85.6
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
.+.+|||+|||+|.++..++... ..++++|+++.+++.+++++... .. .++.+.+.|+.+.+.. ..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~--------~~-~~~~~~~~d~~~~~~~----~~ 110 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKD--------PL-LKIEYRCTSVEDLAEK----GA 110 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHc--------CC-CceEEEeCCHHHhhcC----CC
Confidence 47899999999999998887544 47999999999999999876521 11 1478888888766541 23
Q ss_pred CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
+.||+|++..+++++ .++..++..+.+.|++||.+++..+
T Consensus 111 ~~~D~i~~~~~l~~~----~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 111 KSFDVVTCMEVLEHV----PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred CCccEEEehhHHHhC----CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 789999999999987 6678899999999999999998764
No 79
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=9.2e-14 Score=110.74 Aligned_cols=121 Identities=23% Similarity=0.323 Sum_probs=91.7
Q ss_pred hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..++.++||+|||+|.+++..++.+..+++|+|+++..++.|+.++..+ ++...++....+....+
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N--------~v~~~~~~~~~~~~~~~------ 225 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLN--------GVELLVQAKGFLLLEVP------ 225 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHc--------CCchhhhcccccchhhc------
Confidence 3589999999999999999988888889999999999999999998732 22221222233322222
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC---ChHHHHHHhhhccccc
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKLREEHFCH 223 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~---~~~~~~~~~~~~gf~~ 223 (224)
..++||+|+++-.. .-...+...+.+.++|||+++++-. ..+.+.+.+.++||..
T Consensus 226 ~~~~~DvIVANILA-------~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v 283 (300)
T COG2264 226 ENGPFDVIVANILA-------EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEV 283 (300)
T ss_pred ccCcccEEEehhhH-------HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeE
Confidence 24699999988632 3457888999999999999999833 3577888888888864
No 80
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.54 E-value=2.4e-13 Score=112.47 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=91.2
Q ss_pred HhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 80 LYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
.....+..+||||||+|.++..++... ...++|+|++..+++.+.+++.. .++ .++.++++|+..+.. .
T Consensus 118 ~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~--------~gL-~NV~~i~~DA~~ll~-~ 187 (390)
T PRK14121 118 ISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIEL--------LNL-KNLLIINYDARLLLE-L 187 (390)
T ss_pred hcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH--------cCC-CcEEEEECCHHHhhh-h
Confidence 334456799999999999999998764 45899999999999999988763 233 359999999875421 0
Q ss_pred ccCCCCCeeEEEEccccccccCCHH---HHHHHHHHHHhhccCCeEEEEEeCChHHHHH
Q 027388 159 VLADDAPFDICSCQFAMHYSWSTEA---RARRALANVSALLRPGGTFIGTMPDANVIIK 214 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~l~~~~~~~~---~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~ 214 (224)
.+++++|.|++++..-|. .... ....++..+.++|+|||.+.+.|-+......
T Consensus 188 --~~~~s~D~I~lnFPdPW~-KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~ 243 (390)
T PRK14121 188 --LPSNSVEKIFVHFPVPWD-KKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEF 243 (390)
T ss_pred --CCCCceeEEEEeCCCCcc-ccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHH
Confidence 157899999987654432 1100 1268999999999999999999887654433
No 81
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.53 E-value=2.4e-13 Score=104.83 Aligned_cols=117 Identities=21% Similarity=0.232 Sum_probs=82.0
Q ss_pred hcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-cc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DK 158 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~ 158 (224)
..++.+|||||||+|.++..+++.. .+.|++||+++ | .. ..+++++++|+.+... ..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~~--------------~~~v~~i~~D~~~~~~~~~ 108 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----DP--------------IVGVDFLQGDFRDELVLKA 108 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----cC--------------CCCcEEEecCCCChHHHHH
Confidence 4678899999999999999887653 35899999988 1 01 1248899999987531 00
Q ss_pred c--cCCCCCeeEEEEccccccccCCHHH-------HHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhh
Q 027388 159 V--LADDAPFDICSCQFAMHYSWSTEAR-------ARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218 (224)
Q Consensus 159 ~--~~~~~~~D~i~~~~~l~~~~~~~~~-------~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~ 218 (224)
. ....+.||+|++..+.++.-....+ ...++..+.++|+|||.|++.+.....+.+.+.+
T Consensus 109 i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~ 177 (209)
T PRK11188 109 LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177 (209)
T ss_pred HHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHH
Confidence 0 0135789999998876653111111 2568999999999999999987765555554444
No 82
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.53 E-value=1.2e-13 Score=109.60 Aligned_cols=113 Identities=23% Similarity=0.314 Sum_probs=84.0
Q ss_pred hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..++.+|||+|||+|.++..++..+..+++++|+|+.+++.|++++.. .++...+.+..+
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~--------~~~~~~~~~~~~------------ 176 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL--------NGVELNVYLPQG------------ 176 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH--------cCCCceEEEccC------------
Confidence 457889999999999988877655555799999999999999998762 122111221111
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC---ChHHHHHHhhhcccc
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKLREEHFC 222 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~---~~~~~~~~~~~~gf~ 222 (224)
..+||+|+++... .....++.++.++|+|||+++++.. ....+...+.+.||.
T Consensus 177 -~~~fD~Vvani~~-------~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~ 232 (250)
T PRK00517 177 -DLKADVIVANILA-------NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFT 232 (250)
T ss_pred -CCCcCEEEEcCcH-------HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCE
Confidence 1279999987532 3456789999999999999999843 456777888888874
No 83
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.53 E-value=1.3e-13 Score=102.66 Aligned_cols=108 Identities=24% Similarity=0.303 Sum_probs=88.5
Q ss_pred hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
+.++.+|||+|||.|.++..+........+|+|+++..+..|.++. +.++++|+.+.. . .+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG----------------v~Viq~Dld~gL-~--~f 71 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG----------------VSVIQGDLDEGL-A--DF 71 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC----------------CCEEECCHHHhH-h--hC
Confidence 4788999999999999999888777778999999999998887763 578999987532 1 12
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHH
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK 215 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~ 215 (224)
++++||.|+++.+++++ ..+..+|+++.|+ |...|++.||.......
T Consensus 72 ~d~sFD~VIlsqtLQ~~----~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R 118 (193)
T PF07021_consen 72 PDQSFDYVILSQTLQAV----RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNR 118 (193)
T ss_pred CCCCccEEehHhHHHhH----hHHHHHHHHHHHh---cCeEEEEecChHHHHHH
Confidence 68999999999999987 7889998888655 66899999997644443
No 84
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.52 E-value=2.1e-13 Score=111.35 Aligned_cols=108 Identities=15% Similarity=0.040 Sum_probs=87.6
Q ss_pred HhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 80 LYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
....++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++++. ..++..+++++.+|+.+.+.
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~--------~~gl~~rv~~~~~d~~~~~~-- 213 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA--------EKGVADRMRGIAVDIYKESY-- 213 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHH--------hCCccceEEEEecCccCCCC--
Confidence 344567899999999999999988764 358999998 689999988876 33455679999999876543
Q ss_pred ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
..+|+|++..++|++ +.+....+++++++.|+|||+|++.
T Consensus 214 -----~~~D~v~~~~~lh~~--~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 214 -----PEADAVLFCRILYSA--NEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred -----CCCCEEEeEhhhhcC--ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 246999999999876 5556788999999999999999875
No 85
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.52 E-value=6.9e-13 Score=106.94 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=93.0
Q ss_pred cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
.++.+|||+|||+|.++..++... ..+++++|+|+.+++.|++++. ..++..++.++++|+.+. .
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~--------~~~~~~~i~~~~~D~~~~-~----- 185 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIE--------RHGLEDRVTLIQSDLFAA-L----- 185 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCCcEEEEECchhhc-c-----
Confidence 345789999999999999988653 4589999999999999999976 234445689999997542 2
Q ss_pred CCCCeeEEEEcccc------ccc-----c----------CCHHHHHHHHHHHHhhccCCeEEEEEeCCh-HHHHHHhhhc
Q 027388 162 DDAPFDICSCQFAM------HYS-----W----------STEARARRALANVSALLRPGGTFIGTMPDA-NVIIKKLREE 219 (224)
Q Consensus 162 ~~~~~D~i~~~~~l------~~~-----~----------~~~~~~~~~l~~~~~~lk~gG~li~~~~~~-~~~~~~~~~~ 219 (224)
+...||+|+++-.. ..+ . +.......++..+.+.|+|||++++.+.+. ..+...+.+.
T Consensus 186 ~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~~~v~~~~~~~ 265 (284)
T TIGR03533 186 PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSMEALEEAYPDV 265 (284)
T ss_pred CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhC
Confidence 24579999987311 000 0 011235678999999999999999988754 4667777777
Q ss_pred ccc
Q 027388 220 HFC 222 (224)
Q Consensus 220 gf~ 222 (224)
||.
T Consensus 266 ~~~ 268 (284)
T TIGR03533 266 PFT 268 (284)
T ss_pred CCc
Confidence 764
No 86
>PRK04266 fibrillarin; Provisional
Probab=99.52 E-value=4.8e-13 Score=104.14 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=88.4
Q ss_pred HHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388 79 QLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (224)
Q Consensus 79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (224)
.+.+.++.+|||+|||+|.++..++... .+.|+++|+++.|++.+.+.+.. ..++.++.+|+......
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-----------~~nv~~i~~D~~~~~~~ 135 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-----------RKNIIPILADARKPERY 135 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-----------cCCcEEEECCCCCcchh
Confidence 3456788999999999999999887643 46899999999999987766541 13588899998642100
Q ss_pred cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC------------hHHHHHHhhhcccc
Q 027388 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD------------ANVIIKKLREEHFC 222 (224)
Q Consensus 158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~------------~~~~~~~~~~~gf~ 222 (224)
.. ....||+|++.... ......++.++.+.|||||.++++.+. .....+.++++||.
T Consensus 136 ~~--l~~~~D~i~~d~~~------p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~ 204 (226)
T PRK04266 136 AH--VVEKVDVIYQDVAQ------PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFE 204 (226)
T ss_pred hh--ccccCCEEEECCCC------hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCe
Confidence 00 13569999864321 123355789999999999999995321 12355788888885
No 87
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.52 E-value=2.5e-13 Score=105.06 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=82.4
Q ss_pred HHHHHhhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (224)
Q Consensus 76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 153 (224)
++..+...++.+|||||||+|.++..++... .++++++|+++.+++.+++++... +. .++.++++|...
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~--------g~-~~v~~~~gd~~~ 138 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL--------GY-DNVEVIVGDGTL 138 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--------CC-CCeEEEECCccc
Confidence 4445556788999999999999998776542 368999999999999999998632 22 358999999865
Q ss_pred cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
... ...+||+|++..+...+ ...+.+.|+|||+|++...
T Consensus 139 ~~~-----~~~~fD~I~~~~~~~~~----------~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 139 GYE-----ENAPYDRIYVTAAGPDI----------PKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CCC-----cCCCcCEEEECCCcccc----------hHHHHHhhCCCcEEEEEEc
Confidence 432 35789999998766543 2356778999999988643
No 88
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.51 E-value=4e-13 Score=102.43 Aligned_cols=124 Identities=19% Similarity=0.303 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHhhc---CCCeEEEecCCCchhHHHHHhhcC---CeEEEEeCChhHHHHHHHhccCCcccccccccCCC
Q 027388 69 LNNWIKSVLVQLYAR---RGDVVLDLACGKGGDLIKWDKAKI---GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF 142 (224)
Q Consensus 69 ~~~~~~~~~~~~~~~---~~~~iLDiGcG~G~~~~~l~~~~~---~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 142 (224)
.++|+.+-...+... ...+|||||||.|.....+++... -.++++|.|+.+++..+++.... ..
T Consensus 53 dR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----------e~ 122 (264)
T KOG2361|consen 53 DRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----------ES 122 (264)
T ss_pred hhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----------hh
Confidence 445555444433221 223799999999999999887533 37999999999999999886521 23
Q ss_pred CeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 143 ~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
++...+.|+....+.... ..+++|+|++.++|.-+ +......++.++.++|||||.|++.
T Consensus 123 ~~~afv~Dlt~~~~~~~~-~~~svD~it~IFvLSAi--~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 123 RVEAFVWDLTSPSLKEPP-EEGSVDIITLIFVLSAI--HPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred hhcccceeccchhccCCC-CcCccceEEEEEEEecc--ChHHHHHHHHHHHHHhCCCcEEEEe
Confidence 455666676544422222 57999999999999888 7788999999999999999999985
No 89
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.51 E-value=2.1e-13 Score=109.64 Aligned_cols=116 Identities=22% Similarity=0.303 Sum_probs=87.2
Q ss_pred hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..++++|||+|||+|.+++..++.+..+++++|+++.+++.|+.++.. +++..++.+. ...+ .
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~--------N~~~~~~~v~--~~~~--~----- 221 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAEL--------NGVEDRIEVS--LSED--L----- 221 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHH--------TT-TTCEEES--CTSC--T-----
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHH--------cCCCeeEEEE--Eecc--c-----
Confidence 467889999999999999998877888999999999999999999873 3445444432 1111 1
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE---eCChHHHHHHhhhcccc
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT---MPDANVIIKKLREEHFC 222 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~---~~~~~~~~~~~~~~gf~ 222 (224)
...+||+|+++-.. .-+..++..+.++|+|||+|+++ ....+.+.+.+.+ ||.
T Consensus 222 ~~~~~dlvvANI~~-------~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~ 277 (295)
T PF06325_consen 222 VEGKFDLVVANILA-------DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFE 277 (295)
T ss_dssp CCS-EEEEEEES-H-------HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEE
T ss_pred ccccCCEEEECCCH-------HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCE
Confidence 24899999988654 45677888899999999999987 3355778888866 764
No 90
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.51 E-value=4.8e-13 Score=111.07 Aligned_cols=113 Identities=13% Similarity=0.141 Sum_probs=84.1
Q ss_pred cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..+.+|||+|||+|.++..++... ..+++++|.|+.+++.+++++..+.. ....+++++..|+....
T Consensus 227 ~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~------~~~~~v~~~~~D~l~~~------ 294 (378)
T PRK15001 227 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP------EALDRCEFMINNALSGV------ 294 (378)
T ss_pred ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc------ccCceEEEEEccccccC------
Confidence 335699999999999999887654 46899999999999999998752210 00125788888875422
Q ss_pred CCCCeeEEEEcccccccc-CCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 162 DDAPFDICSCQFAMHYSW-STEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~-~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
...+||+|+|+-.+|... .+.....+++..+.+.|+|||.|++..-
T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 246899999987765431 1334567899999999999999998753
No 91
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.51 E-value=4.6e-13 Score=100.71 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=92.4
Q ss_pred HHHHHHHHhhcC--CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388 73 IKSVLVQLYARR--GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (224)
Q Consensus 73 ~~~~~~~~~~~~--~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d 150 (224)
..+.++.+.++. +.-|||||||+|.-+..+. .....++|+|+|+.|++.|.++-. .-.++.+|
T Consensus 37 ~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~-~~Gh~wiGvDiSpsML~~a~~~e~--------------egdlil~D 101 (270)
T KOG1541|consen 37 AERALELLALPGPKSGLILDIGCGSGLSGSVLS-DSGHQWIGVDISPSMLEQAVEREL--------------EGDLILCD 101 (270)
T ss_pred HHHHHHHhhCCCCCCcEEEEeccCCCcchheec-cCCceEEeecCCHHHHHHHHHhhh--------------hcCeeeee
Confidence 333444444444 6789999999996655553 444678899999999999987432 13578888
Q ss_pred cc-ccccccccCCCCCeeEEEEcccccccc-------CCHHHHHHHHHHHHhhccCCeEEEEEeCCh-----HHHHHHhh
Q 027388 151 CY-EVHLDKVLADDAPFDICSCQFAMHYSW-------STEARARRALANVSALLRPGGTFIGTMPDA-----NVIIKKLR 217 (224)
Q Consensus 151 ~~-~~~~~~~~~~~~~~D~i~~~~~l~~~~-------~~~~~~~~~l~~~~~~lk~gG~li~~~~~~-----~~~~~~~~ 217 (224)
+. .+++ +++.||.+|+..+++|+. .+..-+..|+..++.+|++|+..++..... +.|...-.
T Consensus 102 MG~Glpf-----rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~ 176 (270)
T KOG1541|consen 102 MGEGLPF-----RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAM 176 (270)
T ss_pred cCCCCCC-----CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHH
Confidence 75 3444 789999999999888763 133446778999999999999998875532 33444445
Q ss_pred hcccc
Q 027388 218 EEHFC 222 (224)
Q Consensus 218 ~~gf~ 222 (224)
.+||.
T Consensus 177 ~aGF~ 181 (270)
T KOG1541|consen 177 KAGFG 181 (270)
T ss_pred hhccC
Confidence 66764
No 92
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.50 E-value=3.3e-13 Score=104.74 Aligned_cols=109 Identities=19% Similarity=0.138 Sum_probs=83.1
Q ss_pred HHHHHHhhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388 75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (224)
Q Consensus 75 ~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 152 (224)
.++..+...++.+|||||||+|.++..++... ...++++|+++.+++.|++++... ++ .+++++++|+.
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~--------g~-~~v~~~~~d~~ 138 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL--------GL-DNVIVIVGDGT 138 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC--------CC-CCeEEEECCcc
Confidence 34444556788999999999999998887653 246999999999999999998732 22 35899999986
Q ss_pred ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
+... ...+||+|++.....++ ...+.+.|+|||+|++...
T Consensus 139 ~~~~-----~~~~fD~Ii~~~~~~~~----------~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 139 QGWE-----PLAPYDRIYVTAAGPKI----------PEALIDQLKEGGILVMPVG 178 (215)
T ss_pred cCCc-----ccCCCCEEEEcCCcccc----------cHHHHHhcCcCcEEEEEEc
Confidence 5432 34689999988765543 2457788999999998654
No 93
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.50 E-value=2.8e-13 Score=105.32 Aligned_cols=130 Identities=20% Similarity=0.217 Sum_probs=101.6
Q ss_pred hcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
....++|||+|||+|..++.++.. ...++++||+.+.+.+.|+++++ .+.+..++++++.|+.++....
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~--------ln~l~~ri~v~~~Di~~~~~~~-- 111 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVA--------LNPLEERIQVIEADIKEFLKAL-- 111 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHH--------hCcchhceeEehhhHHHhhhcc--
Confidence 345889999999999999998876 44799999999999999999988 3567788999999998875421
Q ss_pred CCCCCeeEEEEccccccccC--------------CHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHhhhcccc
Q 027388 161 ADDAPFDICSCQFAMHYSWS--------------TEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLREEHFC 222 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~--------------~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~~~~gf~ 222 (224)
...+||+|+|+-.++-.-. ..-..+++++...++||+||.+.+..+. ...+.+.+++.+|.
T Consensus 112 -~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~ 188 (248)
T COG4123 112 -VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLE 188 (248)
T ss_pred -cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCC
Confidence 2357999999864332100 0113678999999999999999988774 35678888877664
No 94
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.50 E-value=1.4e-12 Score=103.44 Aligned_cols=125 Identities=19% Similarity=0.225 Sum_probs=93.2
Q ss_pred cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..+.+|||+|||+|.++..++.. ....++|+|+++.+++.+++++.. .++. ++.++++|+.+. .
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~--------~~~~-~~~~~~~d~~~~-~----- 150 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR--------LGLD-NVTFLQSDWFEP-L----- 150 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------cCCC-eEEEEECchhcc-C-----
Confidence 34568999999999999998865 345899999999999999998762 2222 488999998652 2
Q ss_pred CCCCeeEEEEcccccc------ccC----------------CHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHhh
Q 027388 162 DDAPFDICSCQFAMHY------SWS----------------TEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLR 217 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~------~~~----------------~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~~ 217 (224)
+.++||+|+++..... +.. .......++..+.++|+|||.+++.... ...+.+.+.
T Consensus 151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~ 230 (251)
T TIGR03534 151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFE 230 (251)
T ss_pred cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHH
Confidence 3578999998643221 100 0122357889999999999999998654 357888899
Q ss_pred hcccc
Q 027388 218 EEHFC 222 (224)
Q Consensus 218 ~~gf~ 222 (224)
+.||.
T Consensus 231 ~~gf~ 235 (251)
T TIGR03534 231 AAGFA 235 (251)
T ss_pred hCCCC
Confidence 88885
No 95
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.49 E-value=1.6e-12 Score=105.88 Aligned_cols=123 Identities=17% Similarity=0.174 Sum_probs=90.5
Q ss_pred CeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388 86 DVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (224)
.+|||+|||+|.++..++... ..+++++|+|+.+++.|++++.. .++..++.++++|+.+. . +..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~--------~~l~~~i~~~~~D~~~~-l-----~~~ 200 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIER--------HGLEDRVTLIESDLFAA-L-----PGR 200 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------hCCCCcEEEEECchhhh-C-----CCC
Confidence 689999999999999887653 46899999999999999999862 34445689999997542 1 245
Q ss_pred CeeEEEEcccc-------------ccc--------cCCHHHHHHHHHHHHhhccCCeEEEEEeCCh-HHHHHHhhhcccc
Q 027388 165 PFDICSCQFAM-------------HYS--------WSTEARARRALANVSALLRPGGTFIGTMPDA-NVIIKKLREEHFC 222 (224)
Q Consensus 165 ~~D~i~~~~~l-------------~~~--------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~-~~~~~~~~~~gf~ 222 (224)
+||+|+++-.. .|- .++......+++.+.+.|+|||.+++.+.+. ..+...+.+.+|.
T Consensus 201 ~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~~~~~~~~~~~~~~ 280 (307)
T PRK11805 201 RYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSRVHLEEAYPDVPFT 280 (307)
T ss_pred CccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHhhCCCE
Confidence 79999987311 000 0012345688999999999999999987653 4566666666653
No 96
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.48 E-value=2e-12 Score=95.70 Aligned_cols=124 Identities=21% Similarity=0.216 Sum_probs=99.3
Q ss_pred HHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (224)
Q Consensus 76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (224)
.+..+.+.++..++|||||||..+.+++.. ..++++++|-++.+++..++++..+ + -.|+.++.+++-+.
T Consensus 26 ~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f--------g-~~n~~vv~g~Ap~~ 96 (187)
T COG2242 26 TLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF--------G-VDNLEVVEGDAPEA 96 (187)
T ss_pred HHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh--------C-CCcEEEEeccchHh
Confidence 455667889999999999999999999843 5579999999999999999998733 3 44699999998665
Q ss_pred ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh---HHHHHHhhhccc
Q 027388 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA---NVIIKKLREEHF 221 (224)
Q Consensus 155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~---~~~~~~~~~~gf 221 (224)
.. ....+|.|+..+. . ....++..+...|+|||.++++.-.. ..+.+.+++.||
T Consensus 97 L~-----~~~~~daiFIGGg-~-------~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 97 LP-----DLPSPDAIFIGGG-G-------NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred hc-----CCCCCCEEEECCC-C-------CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 32 2338999999886 3 35678999999999999999986654 456667777776
No 97
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.47 E-value=1.1e-12 Score=101.47 Aligned_cols=134 Identities=11% Similarity=0.074 Sum_probs=97.1
Q ss_pred hhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccc---ccccccCCCC
Q 027388 67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH---HQRRKKFSFP 143 (224)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 143 (224)
...+.++...+..+...++.+||..|||.|..+..|+..+. +|+|+|+|+..++.+.+........ +.....-...
T Consensus 26 ~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 104 (226)
T PRK13256 26 ESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDD 104 (226)
T ss_pred CCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCc
Confidence 34455555555555445678999999999999999986555 7999999999999987743210000 0000011346
Q ss_pred eeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 144 v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
++++++|+.+++.... ..+.||+|+-..++..+ +.+...++.+.+.++|+|||.+++.
T Consensus 105 i~~~~gD~f~l~~~~~--~~~~fD~VyDra~~~Al--pp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 105 IEIYVADIFNLPKIAN--NLPVFDIWYDRGAYIAL--PNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred eEEEEccCcCCCcccc--ccCCcCeeeeehhHhcC--CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 8999999988753110 23689999999999888 7788999999999999999987765
No 98
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.47 E-value=1.3e-12 Score=107.69 Aligned_cols=108 Identities=15% Similarity=0.202 Sum_probs=83.1
Q ss_pred cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
....+|||+|||+|.++..+++.. ..+++++|+|+.+++.+++++..+ .+ ...++..|+...
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n--------~l--~~~~~~~D~~~~------- 257 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN--------GL--EGEVFASNVFSD------- 257 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------CC--CCEEEEcccccc-------
Confidence 345689999999999999887654 358999999999999999987732 22 245666776432
Q ss_pred CCCCeeEEEEccccccccC-CHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 162 DDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~-~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
..+.||+|+++..+|+... .......+++.+.+.|+|||.|++...
T Consensus 258 ~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 258 IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2468999999988876322 235678999999999999999988643
No 99
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.46 E-value=2e-13 Score=104.08 Aligned_cols=98 Identities=13% Similarity=0.182 Sum_probs=72.1
Q ss_pred CeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc--ccccccccccCCC
Q 027388 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD--CYEVHLDKVLADD 163 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d--~~~~~~~~~~~~~ 163 (224)
+.++|+|||+|..+..++ ..+.+|+++|+|+.|++.|++..+ +.+.+.. +.+.+..++...+
T Consensus 35 ~~a~DvG~G~Gqa~~~ia-e~~k~VIatD~s~~mL~~a~k~~~---------------~~y~~t~~~ms~~~~v~L~g~e 98 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIA-EHYKEVIATDVSEAMLKVAKKHPP---------------VTYCHTPSTMSSDEMVDLLGGE 98 (261)
T ss_pred ceEEEeccCCCcchHHHH-HhhhhheeecCCHHHHHHhhcCCC---------------cccccCCccccccccccccCCC
Confidence 389999999995555554 567899999999999999988765 2222221 1222222222247
Q ss_pred CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCe-EEEE
Q 027388 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIG 204 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG-~li~ 204 (224)
+++|+|+|..++||+ +...+.+.+.++||+.| .+.+
T Consensus 99 ~SVDlI~~Aqa~HWF-----dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 99 ESVDLITAAQAVHWF-----DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred cceeeehhhhhHHhh-----chHHHHHHHHHHcCCCCCEEEE
Confidence 899999999999997 67899999999999876 4443
No 100
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.46 E-value=3e-12 Score=103.40 Aligned_cols=122 Identities=15% Similarity=0.210 Sum_probs=89.6
Q ss_pred CeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388 86 DVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (224)
.+|||+|||+|.++..++... ..+++++|+|+.+++.|++++.. .++..++.++++|+.+. . ...
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~--------~~~~~~v~~~~~d~~~~-~-----~~~ 181 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEK--------NQLEHRVEFIQSNLFEP-L-----AGQ 181 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEECchhcc-C-----cCC
Confidence 689999999999999988654 36899999999999999998762 23444589999998642 2 234
Q ss_pred CeeEEEEcc-------------ccccc--------cCCHHHHHHHHHHHHhhccCCeEEEEEeCCh--HHHHHHhh-hcc
Q 027388 165 PFDICSCQF-------------AMHYS--------WSTEARARRALANVSALLRPGGTFIGTMPDA--NVIIKKLR-EEH 220 (224)
Q Consensus 165 ~~D~i~~~~-------------~l~~~--------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~--~~~~~~~~-~~g 220 (224)
+||+|+++- +..|- .++......++..+.+.|+|||++++.+.+. ..+...+. +.|
T Consensus 182 ~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~ 261 (284)
T TIGR00536 182 KIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFT 261 (284)
T ss_pred CccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCC
Confidence 899999862 11111 0112356788999999999999999988754 45555666 346
Q ss_pred c
Q 027388 221 F 221 (224)
Q Consensus 221 f 221 (224)
|
T Consensus 262 ~ 262 (284)
T TIGR00536 262 W 262 (284)
T ss_pred C
Confidence 6
No 101
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.46 E-value=1.3e-12 Score=99.88 Aligned_cols=99 Identities=26% Similarity=0.373 Sum_probs=76.3
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc-cc-ccccc
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VH-LDKVL 160 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~ 160 (224)
.++.+|||+|||+|.++..++......++|+|+|+.+++.+++. ++.++++|+.+ ++ .
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----------------~~~~~~~d~~~~l~~~---- 71 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----------------GVNVIQGDLDEGLEAF---- 71 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----------------CCeEEEEEhhhccccc----
Confidence 46789999999999999887655555789999999999988642 25778888764 22 2
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~ 209 (224)
..++||+|+++.+++|+ .++..+++++.+.++ .++++.|+.
T Consensus 72 -~~~sfD~Vi~~~~l~~~----~d~~~~l~e~~r~~~---~~ii~~p~~ 112 (194)
T TIGR02081 72 -PDKSFDYVILSQTLQAT----RNPEEILDEMLRVGR---HAIVSFPNF 112 (194)
T ss_pred -CCCCcCEEEEhhHhHcC----cCHHHHHHHHHHhCC---eEEEEcCCh
Confidence 45789999999999998 667888888877655 455555553
No 102
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.45 E-value=2.5e-12 Score=98.43 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=83.8
Q ss_pred HHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388 78 VQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (224)
Q Consensus 78 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 156 (224)
..+...++.+|||+|||+|.++..++.. ...+++++|+|+.+++.+++++.. .+. .+++++.+|+.+...
T Consensus 34 ~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~--------~~~-~~v~~~~~d~~~~~~ 104 (196)
T PRK07402 34 SQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR--------FGV-KNVEVIEGSAPECLA 104 (196)
T ss_pred HhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------hCC-CCeEEEECchHHHHh
Confidence 3344567889999999999999888754 346899999999999999998762 222 358899998754211
Q ss_pred ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHH
Q 027388 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213 (224)
Q Consensus 157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~ 213 (224)
. ....+|.++.... .....++..+.+.|+|||.+++..++...+.
T Consensus 105 -~---~~~~~d~v~~~~~--------~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~ 149 (196)
T PRK07402 105 -Q---LAPAPDRVCIEGG--------RPIKEILQAVWQYLKPGGRLVATASSLEGLY 149 (196)
T ss_pred -h---CCCCCCEEEEECC--------cCHHHHHHHHHHhcCCCeEEEEEeecHHHHH
Confidence 0 1234566654321 2457889999999999999999988876543
No 103
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.44 E-value=8.1e-14 Score=105.34 Aligned_cols=142 Identities=17% Similarity=0.215 Sum_probs=101.1
Q ss_pred hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEE
Q 027388 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI 113 (224)
Q Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gv 113 (224)
.+....|++.++.|+...-... . ...-..+..++......+-+++||+|||||-.+..+. .-..+++||
T Consensus 85 aYVe~LFD~~Ae~Fd~~LVdkL---~-------Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR-~~a~~ltGv 153 (287)
T COG4976 85 AYVETLFDQYAERFDHILVDKL---G-------YSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALR-DMADRLTGV 153 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---c-------CccHHHHHHHHHhccCCccceeeecccCcCcccHhHH-HHHhhccCC
Confidence 4456678888888875443221 0 1112234555555555567899999999998877764 445589999
Q ss_pred eCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHH
Q 027388 114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS 193 (224)
Q Consensus 114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~ 193 (224)
|+|++|++.|..+-- .-++.++++..+.... ..+.||+|++..|+.|+ -++..++.-..
T Consensus 154 DiS~nMl~kA~eKg~--------------YD~L~~Aea~~Fl~~~---~~er~DLi~AaDVl~Yl----G~Le~~~~~aa 212 (287)
T COG4976 154 DISENMLAKAHEKGL--------------YDTLYVAEAVLFLEDL---TQERFDLIVAADVLPYL----GALEGLFAGAA 212 (287)
T ss_pred chhHHHHHHHHhccc--------------hHHHHHHHHHHHhhhc---cCCcccchhhhhHHHhh----cchhhHHHHHH
Confidence 999999999977632 2345566654433100 46899999999999998 67899999999
Q ss_pred hhccCCeEEEEEeC
Q 027388 194 ALLRPGGTFIGTMP 207 (224)
Q Consensus 194 ~~lk~gG~li~~~~ 207 (224)
..|+|||.|.++.-
T Consensus 213 ~~L~~gGlfaFSvE 226 (287)
T COG4976 213 GLLAPGGLFAFSVE 226 (287)
T ss_pred HhcCCCceEEEEec
Confidence 99999999999843
No 104
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.44 E-value=4.4e-12 Score=105.69 Aligned_cols=126 Identities=15% Similarity=0.167 Sum_probs=92.3
Q ss_pred cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
.++.+|||+|||+|.++..++.. ...+++++|+|+.+++.|++++.. ...++.++++|+.+....
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~----------~g~rV~fi~gDl~e~~l~---- 315 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD----------LGARVEFAHGSWFDTDMP---- 315 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----------cCCcEEEEEcchhccccc----
Confidence 35579999999999999988754 456899999999999999999762 133689999998654321
Q ss_pred CCCCeeEEEEcccccc-----c----------------cCCHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHhhh
Q 027388 162 DDAPFDICSCQFAMHY-----S----------------WSTEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLRE 218 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~-----~----------------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~~~ 218 (224)
..++||+|+++-...- . .++......++..+.+.|+|||.+++.... ...+.+.+.+
T Consensus 316 ~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~ 395 (423)
T PRK14966 316 SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAE 395 (423)
T ss_pred cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHH
Confidence 2357999999753210 0 011123457778888999999999987654 4678888888
Q ss_pred cccc
Q 027388 219 EHFC 222 (224)
Q Consensus 219 ~gf~ 222 (224)
.||.
T Consensus 396 ~Gf~ 399 (423)
T PRK14966 396 NGFS 399 (423)
T ss_pred CCCc
Confidence 8873
No 105
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2.3e-12 Score=99.54 Aligned_cols=124 Identities=23% Similarity=0.270 Sum_probs=102.2
Q ss_pred HHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388 77 LVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (224)
Q Consensus 77 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (224)
+....+.++.+|||.|.|+|.++..++.. ..++++.+|+.+++.+.|++++. ..++.+++.+..+|+.+.
T Consensus 87 ~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~--------~~~l~d~v~~~~~Dv~~~ 158 (256)
T COG2519 87 VARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLS--------EFGLGDRVTLKLGDVREG 158 (256)
T ss_pred HHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHH--------HhccccceEEEecccccc
Confidence 33456789999999999999999998853 45799999999999999999998 346666789999998876
Q ss_pred ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChH---HHHHHhhhccccc
Q 027388 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN---VIIKKLREEHFCH 223 (224)
Q Consensus 155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~---~~~~~~~~~gf~~ 223 (224)
.. ...||.|+... +++-.++..+.+.|+|||.+++..|..+ ...+.+++.||++
T Consensus 159 ~~------~~~vDav~LDm---------p~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ 215 (256)
T COG2519 159 ID------EEDVDAVFLDL---------PDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVD 215 (256)
T ss_pred cc------ccccCEEEEcC---------CChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccc
Confidence 64 45999998753 5667899999999999999999999875 4555777778865
No 106
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.44 E-value=7e-12 Score=100.87 Aligned_cols=127 Identities=18% Similarity=0.224 Sum_probs=93.5
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
...++.+|||+|||+|.++..++... ...++++|+|+.+++.+++++. .....++.++++|+....
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~---------~~~~~~i~~~~~d~~~~~---- 171 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK---------HGLGARVEFLQGDWFEPL---- 171 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---------hCCCCcEEEEEccccCcC----
Confidence 34567899999999999999887653 4689999999999999999865 122346899999974321
Q ss_pred cCCCCCeeEEEEcccccc------c----------------cCCHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHH
Q 027388 160 LADDAPFDICSCQFAMHY------S----------------WSTEARARRALANVSALLRPGGTFIGTMPD--ANVIIKK 215 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~------~----------------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~ 215 (224)
..++||+|+++....- + .+.......++..+.++|+|||++++.... ...+...
T Consensus 172 --~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~ 249 (275)
T PRK09328 172 --PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRAL 249 (275)
T ss_pred --CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHH
Confidence 2468999998642110 0 011234577888999999999999998653 3567778
Q ss_pred hhhcccc
Q 027388 216 LREEHFC 222 (224)
Q Consensus 216 ~~~~gf~ 222 (224)
+.+.||.
T Consensus 250 l~~~gf~ 256 (275)
T PRK09328 250 LAAAGFA 256 (275)
T ss_pred HHhCCCc
Confidence 8888874
No 107
>PTZ00146 fibrillarin; Provisional
Probab=99.43 E-value=2.9e-12 Score=102.17 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=87.0
Q ss_pred HHhhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc-
Q 027388 79 QLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH- 155 (224)
Q Consensus 79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~- 155 (224)
.+.+.++.+|||+|||+|.++..++..- ...|++||+|+.+.+........ ..++.++.+|+..-.
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----------r~NI~~I~~Da~~p~~ 195 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----------RPNIVPIIEDARYPQK 195 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----------cCCCEEEECCccChhh
Confidence 3456788999999999999999988653 46899999998766544444321 135888899976321
Q ss_pred cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE--------eCChHHH----HHHhhhcccc
Q 027388 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT--------MPDANVI----IKKLREEHFC 222 (224)
Q Consensus 156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~--------~~~~~~~----~~~~~~~gf~ 222 (224)
... ..+.||+|++..+. .+....++.++.+.|||||.|++. ++..+.+ .+.|+++||.
T Consensus 196 y~~---~~~~vDvV~~Dva~------pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~ 265 (293)
T PTZ00146 196 YRM---LVPMVDVIFADVAQ------PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLK 265 (293)
T ss_pred hhc---ccCCCCEEEEeCCC------cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCc
Confidence 110 23579999987742 134556667899999999999985 3344444 4678888885
No 108
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.42 E-value=1.4e-12 Score=98.03 Aligned_cols=147 Identities=16% Similarity=0.242 Sum_probs=90.3
Q ss_pred hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEE
Q 027388 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI 113 (224)
Q Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gv 113 (224)
++..+.|.+-.+.|+........+....|.-.+..+..|+. ...+...|.|+|||.+.++..+ ....+|+..
T Consensus 28 ~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~------~~~~~~viaD~GCGdA~la~~~--~~~~~V~Sf 99 (219)
T PF05148_consen 28 EEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK------KRPKSLVIADFGCGDAKLAKAV--PNKHKVHSF 99 (219)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC------TS-TTS-EEEES-TT-HHHHH----S---EEEE
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH------hcCCCEEEEECCCchHHHHHhc--ccCceEEEe
Confidence 44455666666666555555555555555544444433333 2244578999999999888654 344479999
Q ss_pred eCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHH
Q 027388 114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS 193 (224)
Q Consensus 114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~ 193 (224)
|+-+. +-.+..||+.++|+ +++.+|+++++.+|.- .+...++.+..
T Consensus 100 DLva~------------------------n~~Vtacdia~vPL-----~~~svDv~VfcLSLMG-----Tn~~~fi~EA~ 145 (219)
T PF05148_consen 100 DLVAP------------------------NPRVTACDIANVPL-----EDESVDVAVFCLSLMG-----TNWPDFIREAN 145 (219)
T ss_dssp ESS-S------------------------STTEEES-TTS-S-------TT-EEEEEEES---S-----S-HHHHHHHHH
T ss_pred eccCC------------------------CCCEEEecCccCcC-----CCCceeEEEEEhhhhC-----CCcHHHHHHHH
Confidence 98651 13577899999998 6899999999988764 67899999999
Q ss_pred hhccCCeEEEEE-----eCChHHHHHHhhhcccc
Q 027388 194 ALLRPGGTFIGT-----MPDANVIIKKLREEHFC 222 (224)
Q Consensus 194 ~~lk~gG~li~~-----~~~~~~~~~~~~~~gf~ 222 (224)
|+||+||.|.|. ..+.....+.+...||.
T Consensus 146 RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~ 179 (219)
T PF05148_consen 146 RVLKPGGILKIAEVKSRFENVKQFIKALKKLGFK 179 (219)
T ss_dssp HHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEE
T ss_pred heeccCcEEEEEEecccCcCHHHHHHHHHHCCCe
Confidence 999999999986 44677888888888884
No 109
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.41 E-value=5.1e-12 Score=85.57 Aligned_cols=103 Identities=26% Similarity=0.383 Sum_probs=82.6
Q ss_pred eEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCe
Q 027388 87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF 166 (224)
Q Consensus 87 ~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 166 (224)
+|+|+|||.|..+..++.....+++++|+++..++.+++... .....++.++.+|+.+.... ...+|
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~----~~~~~ 67 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAA---------ALLADNVEVLKGDAEELPPE----ADESF 67 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHh---------cccccceEEEEcChhhhccc----cCCce
Confidence 589999999999988876456799999999999999985332 12234588889988766431 35789
Q ss_pred eEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 167 DICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 167 D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
|+|++..+++++ ......+++.+.+.+++||.+++.
T Consensus 68 d~i~~~~~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 68 DVIISDPPLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEEEEccceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 999999998862 378899999999999999999876
No 110
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.41 E-value=4.9e-12 Score=98.00 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=80.0
Q ss_pred HHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (224)
Q Consensus 77 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 156 (224)
+..+...++.+|||+|||+|.++..++... .+++++|+++.+++.+++++... ++. ++.+.++|..+...
T Consensus 71 ~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~--------~~~-~v~~~~~d~~~~~~ 140 (212)
T PRK00312 71 TELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQL--------GLH-NVSVRHGDGWKGWP 140 (212)
T ss_pred HHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHC--------CCC-ceEEEECCcccCCC
Confidence 334455678899999999999888666443 58999999999999999987622 222 38899998754321
Q ss_pred ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
..+.||+|++...+.++ ...+.+.|+|||.+++...
T Consensus 141 -----~~~~fD~I~~~~~~~~~----------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 -----AYAPFDRILVTAAAPEI----------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -----cCCCcCEEEEccCchhh----------hHHHHHhcCCCcEEEEEEc
Confidence 24789999998766543 2457889999999998766
No 111
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.40 E-value=3.9e-12 Score=98.47 Aligned_cols=132 Identities=23% Similarity=0.286 Sum_probs=93.6
Q ss_pred hhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcc---cccccccCCC
Q 027388 66 LKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDAD---HHQRRKKFSF 142 (224)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~ 142 (224)
.......+...+..+...++.+||..|||.|..+..++..+ .+|+|+|+|+.+++.+.+....... .......-..
T Consensus 19 ~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G-~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~ 97 (218)
T PF05724_consen 19 QGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQG-HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAG 97 (218)
T ss_dssp -TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTT-EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTS
T ss_pred CCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCC-CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCC
Confidence 34555666666666556677899999999999999888655 4999999999999998544321000 0000011234
Q ss_pred CeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 143 ~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
+|+++++|+.+++.. ..++||+|+=..++.-+ +.+...++.+.+.++|+|||.+++
T Consensus 98 ~i~~~~gDfF~l~~~----~~g~fD~iyDr~~l~Al--pp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 98 RITIYCGDFFELPPE----DVGKFDLIYDRTFLCAL--PPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp SEEEEES-TTTGGGS----CHHSEEEEEECSSTTTS---GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred ceEEEEcccccCChh----hcCCceEEEEecccccC--CHHHHHHHHHHHHHHhCCCCcEEE
Confidence 689999999887642 23689999988888777 677899999999999999999433
No 112
>PHA03411 putative methyltransferase; Provisional
Probab=99.40 E-value=8e-12 Score=98.61 Aligned_cols=120 Identities=17% Similarity=0.131 Sum_probs=90.0
Q ss_pred cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
....+|||+|||+|.++..++... ..+++++|+++.+++.+++++. ++.++++|+.+...
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~--------------~v~~v~~D~~e~~~----- 123 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP--------------EAEWITSDVFEFES----- 123 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc--------------CCEEEECchhhhcc-----
Confidence 345799999999999988876543 4689999999999999988743 47889999887642
Q ss_pred CCCCeeEEEEccccccccCC-HHH---------------HHHHHHHHHhhccCCeEEEEEeC---------ChHHHHHHh
Q 027388 162 DDAPFDICSCQFAMHYSWST-EAR---------------ARRALANVSALLRPGGTFIGTMP---------DANVIIKKL 216 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~-~~~---------------~~~~l~~~~~~lk~gG~li~~~~---------~~~~~~~~~ 216 (224)
...||+|+++-.+++.... ..+ ..+++.....+|+|+|.+++... ........+
T Consensus 124 -~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l 202 (279)
T PHA03411 124 -NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWS 202 (279)
T ss_pred -cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHH
Confidence 4689999998877764111 111 24677788889999997766422 346777888
Q ss_pred hhcccc
Q 027388 217 REEHFC 222 (224)
Q Consensus 217 ~~~gf~ 222 (224)
++.||.
T Consensus 203 ~~~g~~ 208 (279)
T PHA03411 203 KQTGLV 208 (279)
T ss_pred HhcCcE
Confidence 888885
No 113
>PRK04457 spermidine synthase; Provisional
Probab=99.40 E-value=7.7e-12 Score=99.72 Aligned_cols=113 Identities=12% Similarity=0.012 Sum_probs=82.7
Q ss_pred cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
.++++|||||||+|.++..++.. ...++++||+++.+++.|++.+.. .....+++++++|+.+.-..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~--------~~~~~rv~v~~~Da~~~l~~---- 132 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL--------PENGERFEVIEADGAEYIAV---- 132 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC--------CCCCCceEEEECCHHHHHHh----
Confidence 46789999999999999888765 346899999999999999998762 22345789999998654321
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
..++||+|++...-.......-....+++.+.+.|+|||++++...
T Consensus 133 ~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 133 HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 2468999997631111000111236899999999999999999644
No 114
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.39 E-value=2e-11 Score=96.76 Aligned_cols=124 Identities=19% Similarity=0.196 Sum_probs=89.0
Q ss_pred CCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 85 GDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
+.+|||+|||+|.++..++... ..+++++|+|+.+++.|++++.. ..++++++|+.+..... ..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~------------~~~~~~~~D~~~~l~~~---~~ 151 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD------------AGGTVHEGDLYDALPTA---LR 151 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH------------cCCEEEEeechhhcchh---cC
Confidence 4589999999999999887543 45899999999999999999762 12478888876432110 13
Q ss_pred CCeeEEEEccccc------cc----------------cCCHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHhhhc
Q 027388 164 APFDICSCQFAMH------YS----------------WSTEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLREE 219 (224)
Q Consensus 164 ~~~D~i~~~~~l~------~~----------------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~~~~ 219 (224)
+.||+|+++-... .+ .+....+..++..+.++|+|||++++.+.. ...+...+++.
T Consensus 152 ~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~ 231 (251)
T TIGR03704 152 GRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARA 231 (251)
T ss_pred CCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHC
Confidence 5799999875321 00 001122457888888999999999988763 46778888888
Q ss_pred cccc
Q 027388 220 HFCH 223 (224)
Q Consensus 220 gf~~ 223 (224)
||..
T Consensus 232 g~~~ 235 (251)
T TIGR03704 232 GLIA 235 (251)
T ss_pred CCCc
Confidence 8754
No 115
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.38 E-value=7.3e-12 Score=95.20 Aligned_cols=108 Identities=20% Similarity=0.233 Sum_probs=74.2
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
...++.+|||+|||+|.++..++... ..+++++|+|+.+ .. .++.++++|+.+.....
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~--------------~~i~~~~~d~~~~~~~~ 88 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI--------------ENVDFIRGDFTDEEVLN 88 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC--------------CCceEEEeeCCChhHHH
Confidence 34678999999999999988877543 3479999999854 11 13778888876532100
Q ss_pred -c--cCCCCCeeEEEEccccc--------cccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388 159 -V--LADDAPFDICSCQFAMH--------YSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (224)
Q Consensus 159 -~--~~~~~~~D~i~~~~~l~--------~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~ 209 (224)
. ..+.+.||+|++..+.+ +. ........++..+.++|+|||++++.....
T Consensus 89 ~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 89 KIRERVGDDKVDVVMSDAAPNISGYWDIDHL-RSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred HHHHHhCCCCccEEEcCCCCCCCCCccccHH-HHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 0 01356899999865421 11 011235789999999999999999965543
No 116
>PRK00811 spermidine synthase; Provisional
Probab=99.37 E-value=1e-11 Score=100.18 Aligned_cols=117 Identities=19% Similarity=0.196 Sum_probs=84.8
Q ss_pred cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..+++||+||||+|..+..+++. ...++++||+++.+++.|++.+..... ...-..+++++.+|+......
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~----~~~~d~rv~v~~~Da~~~l~~---- 146 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAG----GAYDDPRVELVIGDGIKFVAE---- 146 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcc----ccccCCceEEEECchHHHHhh----
Confidence 46789999999999999988865 456899999999999999998752100 000145689999998765321
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
..++||+|++...-.+.....-....+++.+.+.|+|||++++...
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 3578999998754332210111236789999999999999998644
No 117
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.37 E-value=8.7e-12 Score=93.19 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=80.4
Q ss_pred HHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (224)
Q Consensus 76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (224)
++......++.+|||+|||+|.++..++.. ..+++++|+++.+++.+++++.. ..+++++++|+.+++
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~-----------~~~v~ii~~D~~~~~ 72 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA-----------ADNLTVIHGDALKFD 72 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc-----------CCCEEEEECchhcCC
Confidence 444455567789999999999999999866 56899999999999999988751 236899999998876
Q ss_pred cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
. +...||.|+++..++ + ..+....++... .+.++|++++..
T Consensus 73 ~-----~~~~~d~vi~n~Py~-~--~~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 73 L-----PKLQPYKVVGNLPYN-I--STPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred c-----cccCCCEEEECCCcc-c--HHHHHHHHHhcC--CCcceEEEEEEH
Confidence 5 345699999876654 2 233344443322 244788888864
No 118
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.3e-11 Score=93.33 Aligned_cols=110 Identities=21% Similarity=0.244 Sum_probs=85.1
Q ss_pred HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (224)
Q Consensus 73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 152 (224)
+..+++.+.+.++.+|||||||+|..+.-+++... +|+.+|..+...+.|++++...+.. |+.+.++|..
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~---------nV~v~~gDG~ 130 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE---------NVTVRHGDGS 130 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC---------ceEEEECCcc
Confidence 44456667788999999999999988887775444 9999999999999999998843322 4999999965
Q ss_pred ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
.-- ....+||.|++..+...+ + ..+.+.|++||++++-..
T Consensus 131 ~G~-----~~~aPyD~I~Vtaaa~~v--P--------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 131 KGW-----PEEAPYDRIIVTAAAPEV--P--------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred cCC-----CCCCCcCEEEEeeccCCC--C--------HHHHHhcccCCEEEEEEc
Confidence 321 146899999998877654 2 347788899999997543
No 119
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.35 E-value=1.6e-11 Score=106.34 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=90.6
Q ss_pred CCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
+.+|||+|||+|.++..++.. ...+++++|+|+.+++.|++++. ..++..++.++++|+.+. . ..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~--------~~~l~~~v~~~~~D~~~~-~-----~~ 204 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAI--------KYEVTDRIQIIHSNWFEN-I-----EK 204 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHH--------HcCCccceeeeecchhhh-C-----cC
Confidence 468999999999999988754 45689999999999999999876 234445688999997542 1 24
Q ss_pred CCeeEEEEccccc--------------c-----cc---CCHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHhhhc
Q 027388 164 APFDICSCQFAMH--------------Y-----SW---STEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLREE 219 (224)
Q Consensus 164 ~~~D~i~~~~~l~--------------~-----~~---~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~~~~ 219 (224)
++||+|+++-... | ++ ++......++..+.++|+|||.+++.... ...+...+.+.
T Consensus 205 ~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~ 284 (506)
T PRK01544 205 QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDH 284 (506)
T ss_pred CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhc
Confidence 6899999864211 0 00 01123466788899999999999987653 45677778888
Q ss_pred ccc
Q 027388 220 HFC 222 (224)
Q Consensus 220 gf~ 222 (224)
||.
T Consensus 285 g~~ 287 (506)
T PRK01544 285 GYN 287 (506)
T ss_pred CCC
Confidence 874
No 120
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.34 E-value=1.6e-11 Score=96.24 Aligned_cols=129 Identities=22% Similarity=0.329 Sum_probs=95.8
Q ss_pred HHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (224)
Q Consensus 76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 153 (224)
++..+.+.+|.+|||.|.|+|.++..++.. ..++|+.+|+.++..+.|++++. ..++..++++.+.|+.+
T Consensus 32 I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~--------~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE--------RHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp HHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH--------HTTCCTTEEEEES-GGC
T ss_pred HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH--------HcCCCCCceeEecceec
Confidence 445567789999999999999999998864 45799999999999999999988 45667789999999975
Q ss_pred cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhc-cCCeEEEEEeCChHH---HHHHhhhccccc
Q 027388 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL-RPGGTFIGTMPDANV---IIKKLREEHFCH 223 (224)
Q Consensus 154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~l-k~gG~li~~~~~~~~---~~~~~~~~gf~~ 223 (224)
...... ....+|.|+... +++-.++..+.+.| ++||++++-.|..+. ..+.|++.||.+
T Consensus 104 ~g~~~~--~~~~~DavfLDl---------p~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 104 EGFDEE--LESDFDAVFLDL---------PDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp G--STT---TTSEEEEEEES---------SSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred cccccc--ccCcccEEEEeC---------CCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 443111 247899999765 33445788899999 899999999998764 455677778753
No 121
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.33 E-value=1.7e-11 Score=110.20 Aligned_cols=127 Identities=18% Similarity=0.200 Sum_probs=93.4
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC-CCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~ 161 (224)
.++++|||+|||+|.++..++..+..+|++||+|+.+++.|++++.. .++. .+++++++|+.+....
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~--------ng~~~~~v~~i~~D~~~~l~~---- 604 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL--------NGLSGRQHRLIQADCLAWLKE---- 604 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------hCCCccceEEEEccHHHHHHH----
Confidence 35789999999999999998876666799999999999999999873 3343 4689999998664211
Q ss_pred CCCCeeEEEEccccc-------cccCCHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHhhhccc
Q 027388 162 DDAPFDICSCQFAMH-------YSWSTEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKLREEHF 221 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~-------~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~~~~gf 221 (224)
..++||+|++.-... ..+....+...++..+.++|+|||.|++++.. .......+.++||
T Consensus 605 ~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~ 673 (702)
T PRK11783 605 AREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGL 673 (702)
T ss_pred cCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCC
Confidence 146899999864211 11122356778899999999999999886542 2333566666665
No 122
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.32 E-value=8.9e-12 Score=100.26 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEe
Q 027388 69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC 148 (224)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~ 148 (224)
...|...++...++.+++.|||+|||+|.++...++.+..+|++||.|.-+ +.|.+.+..+ ++...++++.
T Consensus 45 t~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N--------~~~~ii~vi~ 115 (346)
T KOG1499|consen 45 TLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDN--------GLEDVITVIK 115 (346)
T ss_pred HHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhc--------CccceEEEee
Confidence 344555566666677899999999999999999988898999999999854 8888888743 4555689999
Q ss_pred ccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 149 GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 149 ~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
+.++++.+ +.+.+|+|++-+.=+++ --+..+..++-.--+.|+|||.++=
T Consensus 116 gkvEdi~L-----P~eKVDiIvSEWMGy~L-l~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 116 GKVEDIEL-----PVEKVDIIVSEWMGYFL-LYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred cceEEEec-----CccceeEEeehhhhHHH-HHhhhhhhhhhhhhhccCCCceEcc
Confidence 99998876 46899999987642222 2345677888888899999999873
No 123
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.32 E-value=1.3e-11 Score=94.84 Aligned_cols=111 Identities=22% Similarity=0.289 Sum_probs=79.5
Q ss_pred HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (224)
Q Consensus 73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d 150 (224)
...+++.+.+.++.+|||||||+|..+..++.. ....|+++|..+...+.|++++... + ..++.++++|
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~--------~-~~nv~~~~gd 131 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL--------G-IDNVEVVVGD 131 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH--------T-THSEEEEES-
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh--------c-cCceeEEEcc
Confidence 444566667889999999999999888877754 2347999999999999999998732 2 2269999999
Q ss_pred ccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 151 ~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
...-.. ...+||.|++..+...+ -..+.+.|++||+|++-..
T Consensus 132 g~~g~~-----~~apfD~I~v~~a~~~i----------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 132 GSEGWP-----EEAPFDRIIVTAAVPEI----------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGGTTG-----GG-SEEEEEESSBBSS------------HHHHHTEEEEEEEEEEES
T ss_pred hhhccc-----cCCCcCEEEEeeccchH----------HHHHHHhcCCCcEEEEEEc
Confidence 754322 35789999998877543 1347788999999997543
No 124
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.32 E-value=2.4e-11 Score=99.21 Aligned_cols=107 Identities=18% Similarity=0.220 Sum_probs=79.2
Q ss_pred HHHHHhhcCCCeEEEecCCCchhHHHHHhhcC--CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (224)
Q Consensus 76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 153 (224)
++..+...++.+|||||||+|.++..+++... +.++++|+++.+++.|++++... +. .++.++++|...
T Consensus 72 ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~--------g~-~nV~~i~gD~~~ 142 (322)
T PRK13943 72 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL--------GI-ENVIFVCGDGYY 142 (322)
T ss_pred HHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc--------CC-CcEEEEeCChhh
Confidence 34444556788999999999999998876432 46999999999999999887622 22 358889999765
Q ss_pred cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
... ...+||+|++...+..+ ...+.+.|+|||.+++..
T Consensus 143 ~~~-----~~~~fD~Ii~~~g~~~i----------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 143 GVP-----EFAPYDVIFVTVGVDEV----------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccc-----ccCCccEEEECCchHHh----------HHHHHHhcCCCCEEEEEe
Confidence 433 24679999987655432 234677899999988753
No 125
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.31 E-value=2.1e-11 Score=93.94 Aligned_cols=104 Identities=18% Similarity=0.306 Sum_probs=83.8
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.....|.|+|||.+.++. .....|+.+|+-+ .+-.++.||+.++|+ +
T Consensus 179 ~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a------------------------~~~~V~~cDm~~vPl-----~ 225 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS----SERHKVHSFDLVA------------------------VNERVIACDMRNVPL-----E 225 (325)
T ss_pred cCceEEEecccchhhhhh----ccccceeeeeeec------------------------CCCceeeccccCCcC-----c
Confidence 456789999999997765 3345788888743 124678999999998 6
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE-----eCChHHHHHHhhhcccccC
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT-----MPDANVIIKKLREEHFCHS 224 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~-----~~~~~~~~~~~~~~gf~~~ 224 (224)
++++|+++++.+|.- .+...++.++.|+|++||.|+|. .++...+.+.+...||.++
T Consensus 226 d~svDvaV~CLSLMg-----tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~ 287 (325)
T KOG3045|consen 226 DESVDVAVFCLSLMG-----TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVK 287 (325)
T ss_pred cCcccEEEeeHhhhc-----ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeee
Confidence 899999998887753 68899999999999999999986 4456678888999999753
No 126
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.30 E-value=8.4e-11 Score=100.21 Aligned_cols=114 Identities=25% Similarity=0.333 Sum_probs=83.2
Q ss_pred HhhcCCCeEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 80 LYARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
+...++.+|||+|||+|..+..++.... ..++++|+++.+++.+++++.. .+.++.++++|+.+....
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~----------~g~~~~~~~~D~~~~~~~- 308 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQR----------LGLKATVIVGDARDPAQW- 308 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH----------cCCCeEEEEcCcccchhh-
Confidence 3456788999999999999998876543 6899999999999999999862 233467889998764310
Q ss_pred ccCCCCCeeEEEEccc------c------ccccCCH-------HHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 159 VLADDAPFDICSCQFA------M------HYSWSTE-------ARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~------l------~~~~~~~-------~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
....+||.|++... + .|. ... ..+..++..+.+.|+|||.+++++.
T Consensus 309 --~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~-~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 309 --WDGQPFDRILLDAPCSATGVIRRHPDIKWL-RRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred --cccCCCCEEEECCCCCcccccccCcccccc-CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 02467999995431 1 011 011 1245789999999999999998864
No 127
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.7e-10 Score=92.71 Aligned_cols=119 Identities=19% Similarity=0.284 Sum_probs=88.6
Q ss_pred eEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCC
Q 027388 87 VVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165 (224)
Q Consensus 87 ~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 165 (224)
+|||+|||+|..++.++.... .+|+++|+|+.+++.|++++.. .++ .++.++++|+..-. .++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~--------~~l-~~~~~~~~dlf~~~-------~~~ 176 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER--------NGL-VRVLVVQSDLFEPL-------RGK 176 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH--------cCC-ccEEEEeeeccccc-------CCc
Confidence 799999999999999986654 4999999999999999999873 333 44666666654322 359
Q ss_pred eeEEEEccccc-----cc-------------c---CCHHHHHHHHHHHHhhccCCeEEEEEeC--ChHHHHHHhhhccc
Q 027388 166 FDICSCQFAMH-----YS-------------W---STEARARRALANVSALLRPGGTFIGTMP--DANVIIKKLREEHF 221 (224)
Q Consensus 166 ~D~i~~~~~l~-----~~-------------~---~~~~~~~~~l~~~~~~lk~gG~li~~~~--~~~~~~~~~~~~gf 221 (224)
||+|+++-..- +. + ++.+....++..+.+.|+|||++++... ....+.+.+.+.||
T Consensus 177 fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~ 255 (280)
T COG2890 177 FDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGF 255 (280)
T ss_pred eeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCC
Confidence 99999874210 00 0 1223467788999999999999999876 44678888888883
No 128
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=5.6e-11 Score=101.48 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=90.4
Q ss_pred HhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (224)
Q Consensus 80 ~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (224)
+...++.+|||+|||+|..+..++.. ..++++++|+++.+++.+++++.. .++. ++.++++|+...+..
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r--------~g~~-~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR--------LGLK-SIKILAADSRNLLEL 318 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH--------cCCC-eEEEEeCChhhcccc
Confidence 34567889999999999999988764 346899999999999999999873 2333 489999998765410
Q ss_pred cccCCCCCeeEEEEc------cccccccC-----CHH-------HHHHHHHHHHhhccCCeEEEEEeC------ChHHHH
Q 027388 158 KVLADDAPFDICSCQ------FAMHYSWS-----TEA-------RARRALANVSALLRPGGTFIGTMP------DANVII 213 (224)
Q Consensus 158 ~~~~~~~~~D~i~~~------~~l~~~~~-----~~~-------~~~~~l~~~~~~lk~gG~li~~~~------~~~~~~ 213 (224)
. ....+.||.|++. +++.+..+ +.. .+..++.++.+.|||||.|+.+|. |...+.
T Consensus 319 ~-~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~ 397 (434)
T PRK14901 319 K-PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIE 397 (434)
T ss_pred c-ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHH
Confidence 0 0024689999963 23322100 111 257889999999999999998764 233444
Q ss_pred HHhhhc
Q 027388 214 KKLREE 219 (224)
Q Consensus 214 ~~~~~~ 219 (224)
..+++.
T Consensus 398 ~~l~~~ 403 (434)
T PRK14901 398 QFLARH 403 (434)
T ss_pred HHHHhC
Confidence 555543
No 129
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.27 E-value=6.5e-11 Score=99.41 Aligned_cols=116 Identities=15% Similarity=0.132 Sum_probs=83.1
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC-CCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~ 161 (224)
.++++|||+|||+|.+++..+..+..++++||+|+.+++.|++++.. .++. .+++++++|+.+.... ...
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~--------Ngl~~~~v~~i~~D~~~~l~~-~~~ 289 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL--------NKLDLSKAEFVRDDVFKLLRT-YRD 289 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------cCCCCCcEEEEEccHHHHHHH-HHh
Confidence 46789999999999998876655556899999999999999999873 3443 3689999998764211 000
Q ss_pred CCCCeeEEEEccccccc-----cCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 162 DDAPFDICSCQFAMHYS-----WSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~-----~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
....||+|++.-...-- .........++....++|+|||.|+..+.
T Consensus 290 ~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred cCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 24589999987543110 00012455667778999999999997654
No 130
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.26 E-value=8.2e-11 Score=92.32 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=83.0
Q ss_pred hcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
..++++|||+|||+|.-+..++.. ..++++++|+++.+++.|++++. ..++..+++++.+|+.+......
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~--------~~gl~~~i~~~~gda~~~L~~l~ 137 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIK--------KAGVDHKINFIQSDALSALDQLL 137 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCCcEEEEEccHHHHHHHHH
Confidence 357889999999999877766643 35699999999999999999987 34566679999999876421000
Q ss_pred -cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 160 -LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 160 -~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
....++||+|++... .+....++..+.++|+|||++++.
T Consensus 138 ~~~~~~~fD~VfiDa~-------k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 138 NNDPKPEFDFAFVDAD-------KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred hCCCCCCCCEEEECCC-------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 002468999987642 245667899999999999999974
No 131
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=8e-11 Score=100.85 Aligned_cols=111 Identities=20% Similarity=0.259 Sum_probs=82.6
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
...++.+|||+|||+|..+..++.. ..++++++|+|+.+++.+++++.. .++. ++.++++|+....
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~--------~g~~-~v~~~~~Da~~~~--- 314 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA--------LGIT-IIETIEGDARSFS--- 314 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH--------hCCC-eEEEEeCcccccc---
Confidence 3457789999999999988877653 345899999999999999999873 2332 4889999987654
Q ss_pred ccCCCCCeeEEEEc----c--ccc------cccCCHH-------HHHHHHHHHHhhccCCeEEEEEeC
Q 027388 159 VLADDAPFDICSCQ----F--AMH------YSWSTEA-------RARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 159 ~~~~~~~~D~i~~~----~--~l~------~~~~~~~-------~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
+...||+|++. + ++. |.+ +.. .+..++.++.+.|+|||+|+++|.
T Consensus 315 ---~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~-~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 315 ---PEEQPDAILLDAPCTGTGVLGRRAELRWKL-TPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred ---cCCCCCEEEEcCCCCCcchhhcCcchhhcC-CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 24689999963 1 111 111 111 245789999999999999999875
No 132
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.25 E-value=2e-11 Score=90.31 Aligned_cols=80 Identities=20% Similarity=0.325 Sum_probs=65.8
Q ss_pred EEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHH
Q 027388 111 VGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA 190 (224)
Q Consensus 111 ~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~ 190 (224)
+|+|+|+.|++.|+++.... ......+++++++|+.+++. .+++||+|++.++++++ .++..+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~------~~~~~~~i~~~~~d~~~lp~-----~~~~fD~v~~~~~l~~~----~d~~~~l~ 65 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLK------ARSCYKCIEWIEGDAIDLPF-----DDCEFDAVTMGYGLRNV----VDRLRAMK 65 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcc------cccCCCceEEEEechhhCCC-----CCCCeeEEEecchhhcC----CCHHHHHH
Confidence 48999999999998775410 11123468999999998876 57899999999999988 67899999
Q ss_pred HHHhhccCCeEEEEE
Q 027388 191 NVSALLRPGGTFIGT 205 (224)
Q Consensus 191 ~~~~~lk~gG~li~~ 205 (224)
++.++|||||.|++.
T Consensus 66 ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 66 EMYRVLKPGSRVSIL 80 (160)
T ss_pred HHHHHcCcCeEEEEE
Confidence 999999999999865
No 133
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.25 E-value=5.2e-11 Score=95.21 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=82.8
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
.+.++.+|||+|||+|..+..++.. ..+.++++|+++.+++.+++++.. .++ .++.+++.|+..+..
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~--------~g~-~~v~~~~~D~~~~~~-- 136 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR--------CGV-LNVAVTNFDGRVFGA-- 136 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH--------cCC-CcEEEecCCHHHhhh--
Confidence 4567889999999999999888764 245899999999999999999873 233 248889999876543
Q ss_pred ccCCCCCeeEEEEcc------cccccc-----CCH-------HHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 159 VLADDAPFDICSCQF------AMHYSW-----STE-------ARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~------~l~~~~-----~~~-------~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
..+.||.|++.- ++..-. -+. ..+..+|..+.+.|||||+|+.+|.
T Consensus 137 ---~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 137 ---AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred ---hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 235699999642 111100 011 1345699999999999999998865
No 134
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.24 E-value=1.8e-10 Score=98.25 Aligned_cols=117 Identities=18% Similarity=0.177 Sum_probs=82.0
Q ss_pred HhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 80 LYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
+.+.++.+|||+|||+|..+..++... .++++++|+++.+++.+++++.. .++...+.+..+|.......
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r--------~g~~~~v~~~~~d~~~~~~~- 304 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKR--------LGLTIKAETKDGDGRGPSQW- 304 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHH--------cCCCeEEEEecccccccccc-
Confidence 455678999999999999999887643 46899999999999999999872 23332234466665433210
Q ss_pred ccCCCCCeeEEEEc------cccccccC-----CH-------HHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 159 VLADDAPFDICSCQ------FAMHYSWS-----TE-------ARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 159 ~~~~~~~~D~i~~~------~~l~~~~~-----~~-------~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
.....||.|++. +++....+ +. ..+..+|.++.+.|||||.|+++|.
T Consensus 305 --~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 305 --AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred --ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 024679999953 23332210 11 1257799999999999999999865
No 135
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.24 E-value=2.4e-11 Score=92.11 Aligned_cols=108 Identities=17% Similarity=0.329 Sum_probs=91.6
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
+....++|||||-|.....+...+..+++.+|.|..|++.++..-. ....+.+..+|-+.+++ .
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-----------p~i~~~~~v~DEE~Ldf-----~ 134 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-----------PSIETSYFVGDEEFLDF-----K 134 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-----------CceEEEEEecchhcccc-----c
Confidence 4567899999999999999887888899999999999999986532 13335678888877776 6
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChH
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~ 210 (224)
++++|+|+++..+||+ +++...+.+|...|||+|.|+.++...+
T Consensus 135 ens~DLiisSlslHW~----NdLPg~m~~ck~~lKPDg~Fiasmlggd 178 (325)
T KOG2940|consen 135 ENSVDLIISSLSLHWT----NDLPGSMIQCKLALKPDGLFIASMLGGD 178 (325)
T ss_pred ccchhhhhhhhhhhhh----ccCchHHHHHHHhcCCCccchhHHhccc
Confidence 8999999999999998 8999999999999999999997755433
No 136
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=1.8e-10 Score=98.07 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=84.7
Q ss_pred HhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (224)
Q Consensus 80 ~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (224)
+.+.++.+|||+|||+|..+..++.. ..+.++++|+++.+++.+++++.. .++. ++.+.++|+..++..
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r--------~g~~-~v~~~~~Da~~l~~~ 303 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR--------LKLS-SIEIKIADAERLTEY 303 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH--------cCCC-eEEEEECchhhhhhh
Confidence 34567889999999999999888764 356899999999999999999872 2333 478999998765410
Q ss_pred cccCCCCCeeEEEEcc---ccccccC--------CH-------HHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 158 KVLADDAPFDICSCQF---AMHYSWS--------TE-------ARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 158 ~~~~~~~~~D~i~~~~---~l~~~~~--------~~-------~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
..+.||.|++.- .+..+-. +. ..+.++|.++.+.|+|||.++.+|.
T Consensus 304 ----~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 304 ----VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred ----hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 246899999632 1111100 01 1346789999999999999999866
No 137
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.23 E-value=7.7e-11 Score=89.60 Aligned_cols=117 Identities=16% Similarity=0.219 Sum_probs=74.5
Q ss_pred CCCeEEEecCCCchhHHHH----Hh---hc---CCeEEEEeCChhHHHHHHHhccCCccc-----------cccc-----
Q 027388 84 RGDVVLDLACGKGGDLIKW----DK---AK---IGYYVGIDIAEGSIEDCRTRYNGDADH-----------HQRR----- 137 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l----~~---~~---~~~~~gvD~s~~~~~~a~~~~~~~~~~-----------~~~~----- 137 (224)
...+|+.+||++|.=...+ .+ .. .-+++|+|+|+.+++.|++-.-..... +.+.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5679999999999833332 22 11 237999999999999998865321111 0000
Q ss_pred ---ccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 138 ---KKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 138 ---~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
..+...|.|...|+.+... ..+.||+|+|.+|+.|+ ..+....+++.+.+.|+|||+|++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~-----~~~~fD~I~CRNVlIYF--~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDP-----PFGRFDLIFCRNVLIYF--DPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-----------EEEEEE-SSGGGS---HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCc-----ccCCccEEEecCEEEEe--CHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 1122458888899877222 46899999999999998 778899999999999999999998743
No 138
>PRK01581 speE spermidine synthase; Validated
Probab=99.23 E-value=2.5e-10 Score=93.51 Aligned_cols=134 Identities=15% Similarity=0.107 Sum_probs=88.4
Q ss_pred hcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
...+++||+||||+|..+..+++.. ..++++||+++.+++.|++... ....+ +..--+.+++++.+|+.++...
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~-L~~~~-~~~~~DpRV~vvi~Da~~fL~~--- 222 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPE-LVSLN-KSAFFDNRVNVHVCDAKEFLSS--- 222 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccc-cchhc-cccCCCCceEEEECcHHHHHHh---
Confidence 3567899999999999888887653 4689999999999999996211 00000 0001246799999998875321
Q ss_pred CCCCCeeEEEEccccccc-cCCHHHHHHHHHHHHhhccCCeEEEEEeCCh-------HHHHHHhhhccc
Q 027388 161 ADDAPFDICSCQFAMHYS-WSTEARARRALANVSALLRPGGTFIGTMPDA-------NVIIKKLREEHF 221 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~-~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~-------~~~~~~~~~~gf 221 (224)
..+.||+|++...-... ....-.-..+++.+++.|+|||++++..... ..+...+++.+|
T Consensus 223 -~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~ 290 (374)
T PRK01581 223 -PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGL 290 (374)
T ss_pred -cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCC
Confidence 35689999987421000 0011223678999999999999998864432 224455566554
No 139
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.23 E-value=2e-10 Score=87.59 Aligned_cols=124 Identities=19% Similarity=0.300 Sum_probs=84.3
Q ss_pred CCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
....+||||||.|.++..++... ...++|+|++...+..+.+++... ...|+.++++|+..+.. . ..+
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~---------~l~Nv~~~~~da~~~l~-~-~~~ 85 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR---------GLKNVRFLRGDARELLR-R-LFP 85 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH---------TTSSEEEEES-CTTHHH-H-HST
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh---------cccceEEEEccHHHHHh-h-ccc
Confidence 34489999999999999998764 457889999999999998887632 23469999999877421 1 114
Q ss_pred CCCeeEEEEccccccccCC----HHHHHHHHHHHHhhccCCeEEEEEeCChH---HHHHHhhh
Q 027388 163 DAPFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPDAN---VIIKKLRE 218 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~----~~~~~~~l~~~~~~lk~gG~li~~~~~~~---~~~~~~~~ 218 (224)
++++|.|+.++.==|.-.. .--...++..+.++|+|||.|.+.|-+.. .+.+.+.+
T Consensus 86 ~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 86 PGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp TTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred CCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 6899999977632111000 00136799999999999999999998764 34444444
No 140
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.9e-10 Score=91.47 Aligned_cols=114 Identities=22% Similarity=0.303 Sum_probs=83.0
Q ss_pred HHHHhhcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (224)
Q Consensus 77 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (224)
+..+....+.+|||+|||.|-++..+++.. ..+++.+|.+...++.|++++..++.. . ..++..|+..-.
T Consensus 151 l~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~--------~-~~v~~s~~~~~v 221 (300)
T COG2813 151 LETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE--------N-TEVWASNLYEPV 221 (300)
T ss_pred HHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC--------c-cEEEEecccccc
Confidence 444444556699999999999999998765 468999999999999999998843222 1 245566653322
Q ss_pred cccccCCCCCeeEEEEccccccccCC-HHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 156 LDKVLADDAPFDICSCQFAMHYSWST-EARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 156 ~~~~~~~~~~~D~i~~~~~l~~~~~~-~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
.++||+|+|+-.+|--... ..-..+++....+.|++||.|.+..
T Consensus 222 -------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 222 -------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred -------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 3499999999887743111 1122478999999999999887753
No 141
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.22 E-value=1.8e-10 Score=88.08 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=82.1
Q ss_pred hcCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCccc-cccc----------------------
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADH-HQRR---------------------- 137 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~-~~~~---------------------- 137 (224)
...+..+|||||.+|.++..+++.. ...++|+|+++..++.|++++..--.. +...
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 3567889999999999999998764 456889999999999999987521110 0000
Q ss_pred ---ccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccC--CHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 138 ---KKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS--TEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 138 ---~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~--~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
.....++-+...+..-...+-+......||+|+|..+.-|+.- ..+.+..+|+++.++|.|||+|++....
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQp 211 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQP 211 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCc
Confidence 0111122222222110000000013579999999876444311 4568999999999999999999997443
No 142
>PRK03612 spermidine synthase; Provisional
Probab=99.22 E-value=7.9e-11 Score=102.54 Aligned_cols=132 Identities=16% Similarity=0.039 Sum_probs=90.4
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCccccccccc-CCCCeeEEecccccccccccc
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~ 160 (224)
+++++|||||||+|..+..+++... .++++||+++.+++.++++..... .| ... -+.+++++.+|..+....
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~-~~--~~~~~dprv~vi~~Da~~~l~~--- 369 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRA-LN--GGALDDPRVTVVNDDAFNWLRK--- 369 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchh-hh--ccccCCCceEEEEChHHHHHHh---
Confidence 4678999999999999988876544 699999999999999998421000 00 001 135689999998764321
Q ss_pred CCCCCeeEEEEccccccccC-CHHHHHHHHHHHHhhccCCeEEEEEeCC-------hHHHHHHhhhccc
Q 027388 161 ADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMPD-------ANVIIKKLREEHF 221 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~-~~~~~~~~l~~~~~~lk~gG~li~~~~~-------~~~~~~~~~~~gf 221 (224)
..++||+|++......... ..-....+++.+++.|+|||++++.... ...+.+.+++.||
T Consensus 370 -~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 370 -LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred -CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 2478999999754322100 0011246889999999999999986432 2356667777776
No 143
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.20 E-value=2.8e-10 Score=91.34 Aligned_cols=115 Identities=19% Similarity=0.165 Sum_probs=81.7
Q ss_pred cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..+++||+||||+|..+..++... ..+++++|+++.+++.+++.+..... ..-..+++++.+|..+....
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~-----~~~~~~v~i~~~D~~~~l~~---- 141 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG-----SYDDPRVDLQIDDGFKFLAD---- 141 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc-----cccCCceEEEECchHHHHHh----
Confidence 456799999999999888887654 56899999999999999987652100 01134577888887553221
Q ss_pred CCCCeeEEEEccccccccCCHHH--HHHHHHHHHhhccCCeEEEEEeCC
Q 027388 162 DDAPFDICSCQFAMHYSWSTEAR--ARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~--~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
..+.||+|++....... .... ...+++.+.+.|+|||++++...+
T Consensus 142 ~~~~yDvIi~D~~~~~~--~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 142 TENTFDVIIVDSTDPVG--PAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred CCCCccEEEEeCCCCCC--cccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 24689999987642221 1112 468899999999999999987543
No 144
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=2.3e-10 Score=98.09 Aligned_cols=114 Identities=20% Similarity=0.232 Sum_probs=82.9
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
...++.+|||+|||+|..+..++.. ..+.++++|+++.+++.+++++.. .++. ++.++++|+.+....
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~--------~g~~-~v~~~~~D~~~~~~~- 316 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR--------LGLT-NIETKALDARKVHEK- 316 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCC-eEEEEeCCcccccch-
Confidence 4457789999999999999988864 356899999999999999998862 2333 389999998765310
Q ss_pred ccCCCCCeeEEEEccc------cccc-----cCCHHH-------HHHHHHHHHhhccCCeEEEEEeC
Q 027388 159 VLADDAPFDICSCQFA------MHYS-----WSTEAR-------ARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~------l~~~-----~~~~~~-------~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
-.+.||+|++... +.+. ..+..+ +..++..+.+.|+|||.|+.++.
T Consensus 317 ---~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 317 ---FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred ---hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 1268999997532 1100 001112 35689999999999999998754
No 145
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.18 E-value=2.5e-10 Score=88.79 Aligned_cols=94 Identities=18% Similarity=0.243 Sum_probs=75.1
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
...++||||+|.|..+..++ ..+.+|+++|.|..|....+++- .+++ +..+... ..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~kg----------------~~vl--~~~~w~~-----~~ 149 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKKG----------------FTVL--DIDDWQQ-----TD 149 (265)
T ss_pred cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhCC----------------CeEE--ehhhhhc-----cC
Confidence 45789999999999999986 57779999999999988877652 2222 2222221 34
Q ss_pred CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.+||+|.|.+++..+ ..+..+|+.+++.|+|+|.+++.
T Consensus 150 ~~fDvIscLNvLDRc----~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 150 FKFDVISCLNVLDRC----DRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred CceEEEeehhhhhcc----CCHHHHHHHHHHHhCCCCEEEEE
Confidence 689999999999877 77899999999999999999975
No 146
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.18 E-value=3.4e-10 Score=96.94 Aligned_cols=126 Identities=19% Similarity=0.200 Sum_probs=84.9
Q ss_pred HHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (224)
Q Consensus 76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (224)
++..+...++.+|||+|||+|.++..++... .+++|+|+|+.+++.|++++.. .++ .++.++++|+.+..
T Consensus 289 vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~--------~~~-~~v~~~~~d~~~~l 358 (443)
T PRK13168 289 ALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARR--------NGL-DNVTFYHANLEEDF 358 (443)
T ss_pred HHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHH--------cCC-CceEEEEeChHHhh
Confidence 3333444567899999999999999887554 6899999999999999998762 222 25899999986532
Q ss_pred cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHH---hhhccc
Q 027388 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK---LREEHF 221 (224)
Q Consensus 156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~---~~~~gf 221 (224)
. ......+.||+|+++-.-. .....+..+.+ ++++++++++. |+..+.+. |.+.||
T Consensus 359 ~-~~~~~~~~fD~Vi~dPPr~-------g~~~~~~~l~~-~~~~~ivyvSC-np~tlaRDl~~L~~~gY 417 (443)
T PRK13168 359 T-DQPWALGGFDKVLLDPPRA-------GAAEVMQALAK-LGPKRIVYVSC-NPATLARDAGVLVEAGY 417 (443)
T ss_pred h-hhhhhcCCCCEEEECcCCc-------ChHHHHHHHHh-cCCCeEEEEEe-ChHHhhccHHHHhhCCc
Confidence 1 0000246799999865322 12344554544 68899888886 55544443 334555
No 147
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.17 E-value=7.3e-10 Score=84.58 Aligned_cols=108 Identities=8% Similarity=-0.016 Sum_probs=78.2
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
..+.+|||+|||+|.+++.++.....+++++|.++.+++.+++++.. .++ .++.++++|+.+.... .
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~--------~~~-~~v~~~~~D~~~~l~~----~ 118 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLAT--------LKA-GNARVVNTNALSFLAQ----P 118 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHH--------hCC-CcEEEEEchHHHHHhh----c
Confidence 45679999999999999876555667999999999999999998762 222 2588999998653211 2
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHh--hccCCeEEEEEeCC
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMPD 208 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~--~lk~gG~li~~~~~ 208 (224)
..+||+|+++-.+.. .....++..+.. +|++++++++++..
T Consensus 119 ~~~fDlV~~DPPy~~-----g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 119 GTPHNVVFVDPPFRK-----GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCCceEEEECCCCCC-----ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 356999999876321 123344444444 47999999998664
No 148
>PLN02366 spermidine synthase
Probab=99.17 E-value=3.5e-10 Score=91.88 Aligned_cols=116 Identities=18% Similarity=0.142 Sum_probs=83.1
Q ss_pred cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..+++||+||||.|..+..+++.. ..+++.||+++.+++.|++.+.... ...-+.+++++.+|+...... .
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~-----~~~~dpRv~vi~~Da~~~l~~-~-- 161 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLA-----VGFDDPRVNLHIGDGVEFLKN-A-- 161 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhc-----cccCCCceEEEEChHHHHHhh-c--
Confidence 567899999999999999888653 4689999999999999999875210 001145799999997654321 0
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
+.+.||+|++...-.+.....-....+++.+++.|+|||+++...
T Consensus 162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 246899999865432211011123678999999999999998753
No 149
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.17 E-value=4.5e-10 Score=90.95 Aligned_cols=144 Identities=24% Similarity=0.317 Sum_probs=104.1
Q ss_pred CCceehhhhHHHHHHHHHHH-hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccccccccc
Q 027388 61 SPIIHLKKLNNWIKSVLVQL-YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK 139 (224)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~ 139 (224)
.|++.+..+...+.+...++ ...+|..|||--||||++++... .-+..++|+|++..|++-|+.++... +
T Consensus 173 RPf~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEag-l~G~~viG~Did~~mv~gak~Nl~~y--------~ 243 (347)
T COG1041 173 RPFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAG-LMGARVIGSDIDERMVRGAKINLEYY--------G 243 (347)
T ss_pred CCccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhh-hcCceEeecchHHHHHhhhhhhhhhh--------C
Confidence 35666667777777776665 67888999999999999999875 45669999999999999999998721 1
Q ss_pred CCCCeeEEe-ccccccccccccCCCCCeeEEEEcccccccc----CC-HHHHHHHHHHHHhhccCCeEEEEEeCChHHHH
Q 027388 140 FSFPARLIC-GDCYEVHLDKVLADDAPFDICSCQFAMHYSW----ST-EARARRALANVSALLRPGGTFIGTMPDANVII 213 (224)
Q Consensus 140 ~~~~v~~~~-~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~----~~-~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~ 213 (224)
+.. ..+.. +|+.++++ +...+|.|++.....--. .. ..-...+|..+.++|++||++++..| ....
T Consensus 244 i~~-~~~~~~~Da~~lpl-----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p--~~~~ 315 (347)
T COG1041 244 IED-YPVLKVLDATNLPL-----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP--RDPR 315 (347)
T ss_pred cCc-eeEEEecccccCCC-----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC--Ccch
Confidence 122 33344 49999887 456799999875332210 00 24478899999999999999999988 2223
Q ss_pred HHhhhccc
Q 027388 214 KKLREEHF 221 (224)
Q Consensus 214 ~~~~~~gf 221 (224)
..+.+.||
T Consensus 316 ~~~~~~~f 323 (347)
T COG1041 316 HELEELGF 323 (347)
T ss_pred hhHhhcCc
Confidence 44444444
No 150
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.17 E-value=5.3e-10 Score=84.53 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=79.9
Q ss_pred eEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc---cCC
Q 027388 87 VVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV---LAD 162 (224)
Q Consensus 87 ~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~ 162 (224)
+|||||||||.++..++.... -...-.|+++..+.......... ++..-..-+..|+...+..-. ...
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~--------~~~Nv~~P~~lDv~~~~w~~~~~~~~~ 99 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA--------GLPNVRPPLALDVSAPPWPWELPAPLS 99 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc--------CCcccCCCeEeecCCCCCccccccccC
Confidence 599999999999999987543 35669999998876666655421 222212345556654422110 012
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
...||.|+|.+++|.. ++.....+|+...++|++||.|++.
T Consensus 100 ~~~~D~i~~~N~lHI~--p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 100 PESFDAIFCINMLHIS--PWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred CCCcceeeehhHHHhc--CHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 4699999999999987 8999999999999999999999986
No 151
>PHA03412 putative methyltransferase; Provisional
Probab=99.17 E-value=2.4e-10 Score=88.41 Aligned_cols=117 Identities=16% Similarity=0.135 Sum_probs=80.9
Q ss_pred cCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh----cCCeEEEEeCChhHHHHHHHhccCCccccc
Q 027388 60 ASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQ 135 (224)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~----~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~ 135 (224)
...++++..+...+ +.. ...+.+|||+|||+|.++..++.. ....++++|+++.+++.|+++..
T Consensus 30 ~GqFfTP~~iAr~~---~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------- 97 (241)
T PHA03412 30 LGAFFTPIGLARDF---TID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------- 97 (241)
T ss_pred CCccCCCHHHHHHH---HHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------
Confidence 34455556653332 111 234679999999999999987753 23589999999999999998754
Q ss_pred ccccCCCCeeEEeccccccccccccCCCCCeeEEEEcccccccc--------CCHHHHHHHHHHHHhhccCCeE
Q 027388 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW--------STEARARRALANVSALLRPGGT 201 (224)
Q Consensus 136 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~--------~~~~~~~~~l~~~~~~lk~gG~ 201 (224)
++.++++|+..... ..+||+|+++--+.-.- +.......++....+++++|+.
T Consensus 98 -------~~~~~~~D~~~~~~------~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 98 -------EATWINADALTTEF------DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred -------CCEEEEcchhcccc------cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 37889999876543 46899999986544220 0112355688888887777775
No 152
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=2.7e-10 Score=84.24 Aligned_cols=118 Identities=16% Similarity=0.105 Sum_probs=81.3
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
..-.+++|+|+|||||.+++..+..+..+|++||+++.+++.++++.. .+..++.|+++|+.++.
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~----------~l~g~v~f~~~dv~~~~----- 106 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAE----------ELLGDVEFVVADVSDFR----- 106 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHH----------hhCCceEEEEcchhhcC-----
Confidence 345678999999999999998877788899999999999999999987 24666999999998764
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE-E-EeCChHHHHHHhhhccc
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI-G-TMPDANVIIKKLREEHF 221 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li-~-~~~~~~~~~~~~~~~gf 221 (224)
..+|.++.+-.+.-.- ...| ..++....++.+ +++ + ..+..+.+.....+.|+
T Consensus 107 ---~~~dtvimNPPFG~~~-rhaD-r~Fl~~Ale~s~---vVYsiH~a~~~~f~~~~~~~~G~ 161 (198)
T COG2263 107 ---GKFDTVIMNPPFGSQR-RHAD-RPFLLKALEISD---VVYSIHKAGSRDFVEKFAADLGG 161 (198)
T ss_pred ---CccceEEECCCCcccc-ccCC-HHHHHHHHHhhh---eEEEeeccccHHHHHHHHHhcCC
Confidence 5788888876544221 1111 223333333332 221 1 23345666666666664
No 153
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.15 E-value=6e-10 Score=88.00 Aligned_cols=99 Identities=21% Similarity=0.256 Sum_probs=78.7
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
......+|||||+|.|.++..+++. ...+++.+|+ +..++.+++ ..+++++.+|+. .+.
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------------~~rv~~~~gd~f-~~~--- 156 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------------ADRVEFVPGDFF-DPL--- 156 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------------TTTEEEEES-TT-TCC---
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------------ccccccccccHH-hhh---
Confidence 3446678999999999999999875 3458999999 667777776 225999999997 443
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCC--eEEEEE
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG--GTFIGT 205 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~g--G~li~~ 205 (224)
+ . +|+++..+++|.+ +.++...+|+++++.|+|| |.|+|.
T Consensus 157 --P-~-~D~~~l~~vLh~~--~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 157 --P-V-ADVYLLRHVLHDW--SDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp --S-S-ESEEEEESSGGGS---HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred --c-c-ccceeeehhhhhc--chHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 2 3 9999999999998 7889999999999999998 998875
No 154
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.14 E-value=4e-10 Score=90.42 Aligned_cols=118 Identities=17% Similarity=0.188 Sum_probs=85.3
Q ss_pred CCCeEEEecCCCchhHHHHH----hh-----cCCeEEEEeCChhHHHHHHHhccCCcc----------------------
Q 027388 84 RGDVVLDLACGKGGDLIKWD----KA-----KIGYYVGIDIAEGSIEDCRTRYNGDAD---------------------- 132 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~----~~-----~~~~~~gvD~s~~~~~~a~~~~~~~~~---------------------- 132 (224)
...+|+..||+||.=...++ +. ...+++|+|+|+.+++.|++..-....
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34799999999998333322 21 124699999999999999987532110
Q ss_pred cccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 133 HHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 133 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
.......+...|.|.+.|+.+.+.+ ..+.||+|+|.+++.|+ +.+....++..+.+.|+|||+|++...
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~----~~~~fD~I~cRNvliyF--~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWA----VPGPFDAIFCRNVMIYF--DKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCc----cCCCcceeeHhhHHhcC--CHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 0001122345678888888764331 25789999999999998 778899999999999999999998754
No 155
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.13 E-value=6.3e-10 Score=85.29 Aligned_cols=109 Identities=22% Similarity=0.271 Sum_probs=83.4
Q ss_pred hcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
..++++||||||++|.-+..++.. ..++++.+|+++...+.|++.+. ..++..+++++.+|+.+.-....
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~--------~ag~~~~I~~~~gda~~~l~~l~ 114 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFR--------KAGLDDRIEVIEGDALEVLPELA 114 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHH--------HTTGGGGEEEEES-HHHHHHHHH
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHH--------hcCCCCcEEEEEeccHhhHHHHH
Confidence 357889999999999988888764 35799999999999999999987 45566689999999876421100
Q ss_pred -cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 160 -LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 160 -~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
....++||+|+....- .....++..+.++|++||++++.
T Consensus 115 ~~~~~~~fD~VFiDa~K-------~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 115 NDGEEGQFDFVFIDADK-------RNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HTTTTTSEEEEEEESTG-------GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred hccCCCceeEEEEcccc-------cchhhHHHHHhhhccCCeEEEEc
Confidence 0013689999987642 45677888899999999999986
No 156
>PLN02672 methionine S-methyltransferase
Probab=99.13 E-value=1.1e-09 Score=101.16 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=92.1
Q ss_pred CCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCccc-c------cccccCCCCeeEEecccccccc
Q 027388 85 GDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADH-H------QRRKKFSFPARLICGDCYEVHL 156 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~-~------~~~~~~~~~v~~~~~d~~~~~~ 156 (224)
+.+|||+|||+|.+++.++... ..+++++|+|+.+++.|++++..++.. + .....+..+++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999988654 368999999999999999998632210 0 0001223468999999865321
Q ss_pred ccccCCCCCeeEEEEccccc--------------c------------c--------cCCHHHHHHHHHHHHhhccCCeEE
Q 027388 157 DKVLADDAPFDICSCQFAMH--------------Y------------S--------WSTEARARRALANVSALLRPGGTF 202 (224)
Q Consensus 157 ~~~~~~~~~~D~i~~~~~l~--------------~------------~--------~~~~~~~~~~l~~~~~~lk~gG~l 202 (224)
. ....||+|+++-... | . .++..-...++....++|+|||.+
T Consensus 199 ~----~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l 274 (1082)
T PLN02672 199 D----NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIM 274 (1082)
T ss_pred c----cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEE
Confidence 0 123699999874210 0 0 011223467788888999999999
Q ss_pred EEEeCCh--HHHH-HHhhhcccc
Q 027388 203 IGTMPDA--NVII-KKLREEHFC 222 (224)
Q Consensus 203 i~~~~~~--~~~~-~~~~~~gf~ 222 (224)
++.+... ..+. +.+++.||.
T Consensus 275 ~lEiG~~q~~~v~~~l~~~~gf~ 297 (1082)
T PLN02672 275 IFNMGGRPGQAVCERLFERRGFR 297 (1082)
T ss_pred EEEECccHHHHHHHHHHHHCCCC
Confidence 9987643 4566 478888874
No 157
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.12 E-value=7.9e-10 Score=88.39 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=88.2
Q ss_pred HHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (224)
Q Consensus 76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (224)
++.......++.|||+|||+|.+....+..+..+|++|+.|. |.+.|++.+++ +.+..++.++.+-++++.
T Consensus 169 il~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~--------N~~~~rItVI~GKiEdie 239 (517)
T KOG1500|consen 169 ILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVAS--------NNLADRITVIPGKIEDIE 239 (517)
T ss_pred HHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhc--------CCccceEEEccCcccccc
Confidence 344333457889999999999999988888889999999987 99999999884 356678999999999888
Q ss_pred cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
+ ++++|+||+- .+.+++-.+..++.++.. ++.|+|.|..+-+
T Consensus 240 L------PEk~DviISE-PMG~mL~NERMLEsYl~A-rk~l~P~GkMfPT 281 (517)
T KOG1500|consen 240 L------PEKVDVIISE-PMGYMLVNERMLESYLHA-RKWLKPNGKMFPT 281 (517)
T ss_pred C------chhccEEEec-cchhhhhhHHHHHHHHHH-HhhcCCCCcccCc
Confidence 6 6899999953 344444455666666554 4999999988754
No 158
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=99.12 E-value=2.2e-10 Score=90.07 Aligned_cols=138 Identities=20% Similarity=0.254 Sum_probs=93.0
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccc--------------------ccccccCCCC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH--------------------HQRRKKFSFP 143 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~--------------------~~~~~~~~~~ 143 (224)
++.++||||||.-.+-..-+...+.+++..|+++...+..++++... .. .+++..+...
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~-~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKE-GAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT--TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCC-CCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 56789999999965544333356778999999999999998888754 21 0111111222
Q ss_pred ee-EEeccccccccccc-cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE----------------
Q 027388 144 AR-LICGDCYEVHLDKV-LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT---------------- 205 (224)
Q Consensus 144 v~-~~~~d~~~~~~~~~-~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~---------------- 205 (224)
|+ ++.+|+...+.-.. ...+.+||+|++.++++.+-...+....+++++.++|||||.|++.
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~ 214 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFP 214 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecc
Confidence 43 77888876442111 0012359999999999988778889999999999999999999974
Q ss_pred --eCChHHHHHHhhhcccc
Q 027388 206 --MPDANVIIKKLREEHFC 222 (224)
Q Consensus 206 --~~~~~~~~~~~~~~gf~ 222 (224)
.-+.+.+.+.++++||.
T Consensus 215 ~l~l~ee~v~~al~~aG~~ 233 (256)
T PF01234_consen 215 CLPLNEEFVREALEEAGFD 233 (256)
T ss_dssp ---B-HHHHHHHHHHTTEE
T ss_pred cccCCHHHHHHHHHHcCCE
Confidence 22567899999999984
No 159
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.10 E-value=1.3e-09 Score=89.47 Aligned_cols=103 Identities=14% Similarity=0.122 Sum_probs=73.8
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.++.+|||+|||+|.++..++... .+++|+|+++.+++.|++++.. .++ .+++++++|+.++... .
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~--------~~l-~~v~~~~~D~~~~~~~----~ 237 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAE--------LGL-TNVQFQALDSTQFATA----Q 237 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHH--------cCC-CceEEEEcCHHHHHHh----c
Confidence 356899999999999999988644 6899999999999999998762 233 3589999998765421 2
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
.+.||+|+++-.- ......+..+...++|+++++++.
T Consensus 238 ~~~~D~Vv~dPPr-------~G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 238 GEVPDLVLVNPPR-------RGIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CCCCeEEEECCCC-------CCccHHHHHHHHHcCCCeEEEEEC
Confidence 3579999987431 112222223334467888777765
No 160
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.10 E-value=7.5e-10 Score=82.96 Aligned_cols=115 Identities=19% Similarity=0.129 Sum_probs=75.2
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
....+.+|||+|||+|..++.++.. ...+|+..|..+ .++.++.++..+.. ....++.+...|+.+......
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~------~~~~~v~v~~L~Wg~~~~~~~ 114 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS------LLDGRVSVRPLDWGDELDSDL 114 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------------EEEE--TTS-HHHHH
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc------cccccccCcEEEecCcccccc
Confidence 3467899999999999888888766 577999999999 99999988773311 134557788888765221111
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
. ...+||+|++..+++.- .....+++.+.++|+++|.+++..+
T Consensus 115 ~-~~~~~D~IlasDv~Y~~----~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 115 L-EPHSFDVILASDVLYDE----ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp H-S-SSBSEEEEES--S-G----GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred c-ccccCCEEEEecccchH----HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 1 35689999999998853 6788999999999999988777755
No 161
>PLN02476 O-methyltransferase
Probab=99.08 E-value=2.8e-09 Score=84.93 Aligned_cols=109 Identities=13% Similarity=0.148 Sum_probs=85.3
Q ss_pred hcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
..++++|||||+++|..++.++.. ..++++.+|.++...+.|++++. ..++..+++++.+|+.+......
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~--------~aGl~~~I~li~GdA~e~L~~l~ 187 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYE--------LAGVSHKVNVKHGLAAESLKSMI 187 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--------HcCCCCcEEEEEcCHHHHHHHHH
Confidence 357899999999999989888753 34579999999999999999987 45666689999999876421100
Q ss_pred -cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 160 -LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 160 -~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
....+.||+|+.... ......++..+.++|++||++++.
T Consensus 188 ~~~~~~~FD~VFIDa~-------K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 188 QNGEGSSYDFAFVDAD-------KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred hcccCCCCCEEEECCC-------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 001368999997653 356788999999999999999975
No 162
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.07 E-value=2.1e-09 Score=82.56 Aligned_cols=107 Identities=21% Similarity=0.226 Sum_probs=85.6
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEe-ccccccccc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVHLD 157 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~ 157 (224)
...++++|||||++.|.-++.++..- .++++.+|+++++.+.|++++. ..++...+..+. +|+.+.-..
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~--------~ag~~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA--------EAGVDDRIELLLGGDALDVLSR 127 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH--------HcCCcceEEEEecCcHHHHHHh
Confidence 34688999999999998887777542 4689999999999999999998 566777788888 576654321
Q ss_pred cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
...++||+|+.... ......++..+.++|+|||++++.
T Consensus 128 ---~~~~~fDliFIDad-------K~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 128 ---LLDGSFDLVFIDAD-------KADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred ---ccCCCccEEEEeCC-------hhhCHHHHHHHHHHhCCCcEEEEe
Confidence 13689999997653 356788999999999999999985
No 163
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.06 E-value=2.2e-09 Score=91.49 Aligned_cols=103 Identities=22% Similarity=0.280 Sum_probs=74.0
Q ss_pred CCeEEEecCCCchhHHHHHhhc-----CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 85 GDVVLDLACGKGGDLIKWDKAK-----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~-----~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
++.|||||||+|.+....++.. ..+|++||.++.++...+++++ ..++...|+++++|++++..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~--------~n~w~~~V~vi~~d~r~v~l--- 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVN--------ANGWGDKVTVIHGDMREVEL--- 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHH--------HTTTTTTEEEEES-TTTSCH---
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHH--------hcCCCCeEEEEeCcccCCCC---
Confidence 5789999999999887665543 4689999999998888877655 34667789999999999886
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li 203 (224)
+..+|+|++=. +..+.+.+ -....|....+.|||||+++
T Consensus 256 ---pekvDIIVSEl-LGsfg~nE-l~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 256 ---PEKVDIIVSEL-LGSFGDNE-LSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---SS-EEEEEE----BTTBTTT-SHHHHHHHGGGGEEEEEEEE
T ss_pred ---CCceeEEEEec-cCCccccc-cCHHHHHHHHhhcCCCCEEe
Confidence 46999999632 23222223 33446788899999999887
No 164
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.06 E-value=2.2e-09 Score=77.64 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=93.8
Q ss_pred HHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (224)
Q Consensus 76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 153 (224)
|........+..|||+|.|||.++..++.. ....++.+|.|++++....+... .++++.+|+.+
T Consensus 40 M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p--------------~~~ii~gda~~ 105 (194)
T COG3963 40 MASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP--------------GVNIINGDAFD 105 (194)
T ss_pred HHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC--------------Cccccccchhh
Confidence 444556778899999999999999998875 34679999999999999999876 26788999877
Q ss_pred cccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 154 ~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
+.....+.....||.|+|..-+-.+ +.....++++.+...|.+||.++--+.
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~--P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNF--PMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccC--cHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 6632233356899999998877666 677889999999999999999886543
No 165
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.05 E-value=5.3e-09 Score=82.97 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=84.5
Q ss_pred CCCeEEEecCCCchh----HHHHHhhc------CCeEEEEeCChhHHHHHHHhccC-Ccc-c----------ccc-----
Q 027388 84 RGDVVLDLACGKGGD----LIKWDKAK------IGYYVGIDIAEGSIEDCRTRYNG-DAD-H----------HQR----- 136 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~----~~~l~~~~------~~~~~gvD~s~~~~~~a~~~~~~-~~~-~----------~~~----- 136 (224)
...+|+-+||+||.= ++.+.+.. ..+++++|+|...++.|+.-.-. ... . +.+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 367999999999982 33333222 35799999999999999877653 111 0 000
Q ss_pred ---cccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 137 ---RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 137 ---~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
...+...|.|...|+..... ..+.||+|+|.+|+.|+ ..+.+..++..+...|+|||+|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-----~~~~fD~IfCRNVLIYF--d~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-----FLGKFDLIFCRNVLIYF--DEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-----ccCCCCEEEEcceEEee--CHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 01122346777777765552 25789999999999998 77889999999999999999999864
No 166
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.04 E-value=4.3e-09 Score=79.27 Aligned_cols=139 Identities=24% Similarity=0.255 Sum_probs=87.3
Q ss_pred hhhHHHHHHHHHHH-hhcCCCeEEEecCCCchhHHHHHhh--cCC--------eEEEEeCChhHHHHHHHhccCCccccc
Q 027388 67 KKLNNWIKSVLVQL-YARRGDVVLDLACGKGGDLIKWDKA--KIG--------YYVGIDIAEGSIEDCRTRYNGDADHHQ 135 (224)
Q Consensus 67 ~~~~~~~~~~~~~~-~~~~~~~iLDiGcG~G~~~~~l~~~--~~~--------~~~gvD~s~~~~~~a~~~~~~~~~~~~ 135 (224)
..+...+...+..+ ...++..+||.-||+|.+.++.+.. ... .++|+|+++.+++.|++++.
T Consensus 10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~------- 82 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLK------- 82 (179)
T ss_dssp TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHH-------
T ss_pred CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHH-------
Confidence 33444444444443 4567889999999999999886543 222 38899999999999999987
Q ss_pred ccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCH----HHHHHHHHHHHhhccCCeEEEEEeCChHH
Q 027388 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE----ARARRALANVSALLRPGGTFIGTMPDANV 211 (224)
Q Consensus 136 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~----~~~~~~l~~~~~~lk~gG~li~~~~~~~~ 211 (224)
..++...+.+.+.|+.+++. ..+.+|.|+++.-...-.... .-...+++++.+++++ ..+++.+.+ ..
T Consensus 83 -~ag~~~~i~~~~~D~~~l~~-----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~-~~ 154 (179)
T PF01170_consen 83 -AAGVEDYIDFIQWDARELPL-----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN-RE 154 (179)
T ss_dssp -HTT-CGGEEEEE--GGGGGG-----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC-CC
T ss_pred -hcccCCceEEEecchhhccc-----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC-HH
Confidence 34555668999999998884 468999999987655432222 2245677888888888 444444433 33
Q ss_pred HHHHhhhcc
Q 027388 212 IIKKLREEH 220 (224)
Q Consensus 212 ~~~~~~~~g 220 (224)
+.+.+...+
T Consensus 155 ~~~~~~~~~ 163 (179)
T PF01170_consen 155 LEKALGLKG 163 (179)
T ss_dssp HHHHHTSTT
T ss_pred HHHHhcchh
Confidence 455554433
No 167
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.03 E-value=1.1e-08 Score=79.73 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=88.3
Q ss_pred HHHHHHHHHH---hhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeE
Q 027388 71 NWIKSVLVQL---YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL 146 (224)
Q Consensus 71 ~~~~~~~~~~---~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~ 146 (224)
+|++.+++.. ....+..|||+|||+|.++..++.. ..+.+++||.|..++..|.+++. +..+...+.+
T Consensus 132 E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~q--------r~~l~g~i~v 203 (328)
T KOG2904|consen 132 EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQ--------RLKLSGRIEV 203 (328)
T ss_pred HHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHH--------HHhhcCceEE
Confidence 4555554443 2334568999999999999988753 56789999999999999999876 4455666777
Q ss_pred EeccccccccccccCCCCCeeEEEEccccccc----------------------cCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYS----------------------WSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 147 ~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~----------------------~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
++.+++...........+.+|+++++-..-.- .+..+....++.-..|.|+|||.+.+
T Consensus 204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 76655543222211246899999987421110 11222345577778899999999999
Q ss_pred EeC
Q 027388 205 TMP 207 (224)
Q Consensus 205 ~~~ 207 (224)
++.
T Consensus 284 e~~ 286 (328)
T KOG2904|consen 284 ELV 286 (328)
T ss_pred Eec
Confidence 865
No 168
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.00 E-value=2.3e-08 Score=79.00 Aligned_cols=112 Identities=22% Similarity=0.227 Sum_probs=88.5
Q ss_pred cCCCeEEEecCCCchhHHHHHhhc---CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAK---IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~---~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
..+-+||||+||.|++....+... ...+...|+|+..++..++...+ .++...++|.++|+.+... .
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~--------~gL~~i~~f~~~dAfd~~~--l 203 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE--------RGLEDIARFEQGDAFDRDS--L 203 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH--------cCCccceEEEecCCCCHhH--h
Confidence 467799999999999998877642 35789999999999999999884 4566666999999865421 1
Q ss_pred cCCCCCeeEEEEccccccccCCHHH-HHHHHHHHHhhccCCeEEEEEe
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEAR-ARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~-~~~~l~~~~~~lk~gG~li~~~ 206 (224)
.......+++++++.++++ +.++ ....+..+.+.+.|||+||.+.
T Consensus 204 ~~l~p~P~l~iVsGL~ElF--~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 204 AALDPAPTLAIVSGLYELF--PDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred hccCCCCCEEEEecchhhC--CcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 1124678999999999887 4444 5557999999999999999873
No 169
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.00 E-value=3.3e-09 Score=88.31 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=88.7
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccC-CCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+++|||+-|=||.++...+..+..++++||+|...+++|++++.-+ ++ ...+.++++|+.+.--. ....
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LN--------g~~~~~~~~i~~Dvf~~l~~-~~~~ 287 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELN--------GLDGDRHRFIVGDVFKWLRK-AERR 287 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhc--------CCCccceeeehhhHHHHHHH-HHhc
Confidence 48999999999999999988667779999999999999999998733 33 34478999998765321 1113
Q ss_pred CCCeeEEEEcccc-----ccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 163 DAPFDICSCQFAM-----HYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 163 ~~~~D~i~~~~~l-----~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
..+||+|++.-.- ...++...+...++..+.++|+|||.+++++..
T Consensus 288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 4699999975311 011234567889999999999999999988653
No 170
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.98 E-value=4.6e-09 Score=83.77 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (224)
Q Consensus 71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d 150 (224)
.++..++......++.+|||||||+|.++..+++. ..+++++|+++.+++.+++++.. ..+++++++|
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~-----------~~~v~ii~~D 83 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA-----------AGNVEIIEGD 83 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc-----------CCCEEEEEec
Confidence 33444555555667889999999999999999866 46899999999999999988751 2368999999
Q ss_pred ccccccccccCCCCCeeEEEEccccc
Q 027388 151 CYEVHLDKVLADDAPFDICSCQFAMH 176 (224)
Q Consensus 151 ~~~~~~~~~~~~~~~~D~i~~~~~l~ 176 (224)
+.+++. ..||.|+++...+
T Consensus 84 ~~~~~~-------~~~d~Vv~NlPy~ 102 (258)
T PRK14896 84 ALKVDL-------PEFNKVVSNLPYQ 102 (258)
T ss_pred cccCCc-------hhceEEEEcCCcc
Confidence 987764 3479999887654
No 171
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.98 E-value=5.6e-09 Score=81.05 Aligned_cols=118 Identities=21% Similarity=0.295 Sum_probs=87.7
Q ss_pred CeEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388 86 DVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (224)
..+||||||.|.++..+++..+ ..++|||+....+..|.+.+... ++. |+.+++.|+..+... ..+++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~--------~l~-Nlri~~~DA~~~l~~--~~~~~ 118 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKEL--------GLK-NLRLLCGDAVEVLDY--LIPDG 118 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHc--------CCC-cEEEEcCCHHHHHHh--cCCCC
Confidence 5899999999999999997654 46889999999999999887732 222 799999998775421 11456
Q ss_pred CeeEEEEccccccccC----CHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHH
Q 027388 165 PFDICSCQFAMHYSWS----TEARARRALANVSALLRPGGTFIGTMPDANVIIK 214 (224)
Q Consensus 165 ~~D~i~~~~~l~~~~~----~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~ 214 (224)
+.|-|..++.==|.-. ..=-...++..+.++|+|||.|.+.|-+.+....
T Consensus 119 sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 119 SLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred CeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 9999998764222100 0001367999999999999999999987654444
No 172
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.98 E-value=3e-09 Score=85.44 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=65.1
Q ss_pred HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (224)
Q Consensus 73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 152 (224)
...++..+...++.+|||||||+|.++..++.... +++++|+++.|++.+++++. ..+++++++|+.
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~------------~~~v~~i~~D~~ 97 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFA------------EDNLTIIEGDAL 97 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhc------------cCceEEEEChhh
Confidence 34455555566788999999999999999986654 99999999999999988765 246899999998
Q ss_pred ccccccccCCCCCeeEEEEccc
Q 027388 153 EVHLDKVLADDAPFDICSCQFA 174 (224)
Q Consensus 153 ~~~~~~~~~~~~~~D~i~~~~~ 174 (224)
+++.. .-.++.|+++..
T Consensus 98 ~~~~~-----~~~~~~vv~NlP 114 (272)
T PRK00274 98 KVDLS-----ELQPLKVVANLP 114 (272)
T ss_pred cCCHH-----HcCcceEEEeCC
Confidence 87652 111588887754
No 173
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.97 E-value=9.6e-09 Score=86.12 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=78.6
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.++.+|||+|||+|.++..++.. ...++|||+++.+++.|++++.. .++. ++.++++|+.+.... .
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~--------~~~~-~~~~~~~d~~~~~~~----~ 297 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQM--------LGLD-NLSFAALDSAKFATA----Q 297 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHH--------cCCC-cEEEEECCHHHHHHh----c
Confidence 35679999999999999988754 46899999999999999999862 2332 689999998764321 1
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHh
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL 216 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~ 216 (224)
..+||+|++.-.-..+ ...++..+. .++|+++++++. ++..+.+.+
T Consensus 298 ~~~~D~vi~DPPr~G~------~~~~l~~l~-~~~p~~ivyvsc-~p~TlaRDl 343 (374)
T TIGR02085 298 MSAPELVLVNPPRRGI------GKELCDYLS-QMAPKFILYSSC-NAQTMAKDI 343 (374)
T ss_pred CCCCCEEEECCCCCCC------cHHHHHHHH-hcCCCeEEEEEe-CHHHHHHHH
Confidence 2469999987542211 123334443 478999888886 545554443
No 174
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.97 E-value=1.6e-08 Score=76.83 Aligned_cols=112 Identities=8% Similarity=-0.100 Sum_probs=78.7
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
-.+.++||++||+|.+++.++..+...+++||.++.+++.+++++.. .++..++.++++|+...... ....
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~--------~~~~~~~~~~~~D~~~~l~~-~~~~ 118 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLAL--------LKSGEQAEVVRNSALRALKF-LAKK 118 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--------hCCcccEEEEehhHHHHHHH-hhcc
Confidence 36789999999999999999877777899999999999999998862 23344688999998553210 1001
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHH--HhhccCCeEEEEEeCC
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANV--SALLRPGGTFIGTMPD 208 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~--~~~lk~gG~li~~~~~ 208 (224)
...||+|+..-.+.. ......+..+ ..+|+++|++++..+.
T Consensus 119 ~~~~dvv~~DPPy~~-----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 119 PTFDNVIYLDPPFFN-----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CCCceEEEECcCCCC-----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 234788887654432 1223333333 3478999999998654
No 175
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.97 E-value=7.8e-09 Score=88.42 Aligned_cols=122 Identities=17% Similarity=0.183 Sum_probs=81.4
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
...++.+|||+|||+|.++..++.. ..+++++|+++.+++.|++++..+ ++ .+++++++|+.+... ...
T Consensus 289 ~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~--------~~-~nv~~~~~d~~~~l~-~~~ 357 (431)
T TIGR00479 289 ELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELN--------GI-ANVEFLAGTLETVLP-KQP 357 (431)
T ss_pred ccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHh--------CC-CceEEEeCCHHHHHH-HHH
Confidence 3456689999999999999998754 458999999999999999987632 22 358999999865321 110
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHH---HHHhhhccc
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI---IKKLREEHF 221 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~---~~~~~~~gf 221 (224)
.....||+|++.-.=.-+ ...++..+. .++|++.++++. ++..+ ...|.+.||
T Consensus 358 ~~~~~~D~vi~dPPr~G~------~~~~l~~l~-~l~~~~ivyvsc-~p~tlard~~~l~~~gy 413 (431)
T TIGR00479 358 WAGQIPDVLLLDPPRKGC------AAEVLRTII-ELKPERIVYVSC-NPATLARDLEFLCKEGY 413 (431)
T ss_pred hcCCCCCEEEECcCCCCC------CHHHHHHHH-hcCCCEEEEEcC-CHHHHHHHHHHHHHCCe
Confidence 123579999975431110 134444444 378988877764 44433 334555566
No 176
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.95 E-value=1.2e-08 Score=80.23 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=83.8
Q ss_pred cCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
.++++|||||+++|.-+..++.. ..++++.+|.++...+.|++.+. ..++..+++++.+++.+.......
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~--------~ag~~~~I~~~~G~a~e~L~~l~~ 149 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQ--------KAGVAHKIDFREGPALPVLDQMIE 149 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHH--------HCCCCCceEEEeccHHHHHHHHHh
Confidence 57789999999999887777653 34689999999999999999987 456677899999998764211000
Q ss_pred --CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 161 --ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 161 --~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
...++||+|+.... ......++..+.++|++||++++.
T Consensus 150 ~~~~~~~fD~iFiDad-------K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 150 DGKYHGTFDFIFVDAD-------KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ccccCCcccEEEecCC-------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 01368999998653 255678888999999999999975
No 177
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.95 E-value=7.3e-09 Score=83.00 Aligned_cols=126 Identities=18% Similarity=0.264 Sum_probs=85.3
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC-CCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~ 161 (224)
..+++|||+-|=||.++...+..+..+++.||.|..+++++++++.- +++. ..+++++.|+.+.-.. . .
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l--------Ng~~~~~~~~~~~Dvf~~l~~-~-~ 191 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL--------NGLDLDRHRFIQGDVFKFLKR-L-K 191 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH--------TT-CCTCEEEEES-HHHHHHH-H-H
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------cCCCccceEEEecCHHHHHHH-H-h
Confidence 56899999999999999988766777899999999999999999873 2333 4588999998653211 1 0
Q ss_pred CCCCeeEEEEcccccc--ccCCHHHHHHHHHHHHhhccCCeEEEEEeCC----hHHHHHHhhh
Q 027388 162 DDAPFDICSCQFAMHY--SWSTEARARRALANVSALLRPGGTFIGTMPD----ANVIIKKLRE 218 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~--~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~----~~~~~~~~~~ 218 (224)
..+.||+|++.-...- -+.-..+...++..+.++|+|||.|++++.. .+.+.+.+.+
T Consensus 192 ~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~ 254 (286)
T PF10672_consen 192 KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAE 254 (286)
T ss_dssp HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHH
T ss_pred cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHH
Confidence 2469999997542100 0112357788999999999999998876543 3445555444
No 178
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.95 E-value=1.3e-08 Score=79.22 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=62.0
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCe-eEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA-RLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~ 161 (224)
.++.++||+|||+|.++..+++.+..+++++|+++.|+....+.-. ++ .+...|+......+...
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~--------------~v~~~~~~ni~~~~~~~~~~ 139 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE--------------RVKVLERTNIRYVTPADIFP 139 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC--------------CeeEeecCCcccCCHhHcCC
Confidence 3677999999999999999987767789999999988876222211 12 23333444332211111
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE-EEeCC
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI-GTMPD 208 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li-~~~~~ 208 (224)
.-..+|+++++..+ .+..+.+.|++ |.++ +--|.
T Consensus 140 d~~~~DvsfiS~~~------------~l~~i~~~l~~-~~~~~L~KPq 174 (228)
T TIGR00478 140 DFATFDVSFISLIS------------ILPELDLLLNP-NDLTLLFKPQ 174 (228)
T ss_pred CceeeeEEEeehHh------------HHHHHHHHhCc-CeEEEEcChH
Confidence 22467766655432 46678888888 6544 33443
No 179
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.94 E-value=7.3e-09 Score=83.78 Aligned_cols=89 Identities=17% Similarity=0.327 Sum_probs=68.9
Q ss_pred HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (224)
Q Consensus 72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (224)
++..++......++.+|||||||+|.++..++.. ..+++++|+++.+++.+++++.. .+...+++++++|+
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~--------~~~~~~v~ii~~Da 94 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQN--------SPLASKLEVIEGDA 94 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHh--------cCCCCcEEEEECCH
Confidence 3445555556678889999999999999988754 45899999999999999988762 12234699999999
Q ss_pred cccccccccCCCCCeeEEEEccccc
Q 027388 152 YEVHLDKVLADDAPFDICSCQFAMH 176 (224)
Q Consensus 152 ~~~~~~~~~~~~~~~D~i~~~~~l~ 176 (224)
.+.+. ..||+|+++...+
T Consensus 95 l~~~~-------~~~d~VvaNlPY~ 112 (294)
T PTZ00338 95 LKTEF-------PYFDVCVANVPYQ 112 (294)
T ss_pred hhhcc-------cccCEEEecCCcc
Confidence 87654 4689999876544
No 180
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.94 E-value=2.9e-08 Score=80.90 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=58.4
Q ss_pred CCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccc-cCCCCeeEEec-ccccccccccc
Q 027388 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK-KFSFPARLICG-DCYEVHLDKVL 160 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~v~~~~~-d~~~~~~~~~~ 160 (224)
.+.++||||||+|.+...++.. ...+++|+|+++.+++.|++++.. . .+..++.+.+. +...+.. ...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~--------Np~l~~~I~~~~~~~~~~i~~-~i~ 184 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISA--------NPGLNGAIRLRLQKDSKAIFK-GII 184 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHh--------ccCCcCcEEEEEccchhhhhh-ccc
Confidence 4679999999999776666543 346899999999999999999873 3 34556776543 3322211 111
Q ss_pred CCCCCeeEEEEccccc
Q 027388 161 ADDAPFDICSCQFAMH 176 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~ 176 (224)
...+.||+|+|+--++
T Consensus 185 ~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 185 HKNERFDATLCNPPFH 200 (321)
T ss_pred ccCCceEEEEeCCCCc
Confidence 1356899999997655
No 181
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.91 E-value=1.5e-08 Score=76.42 Aligned_cols=114 Identities=19% Similarity=0.151 Sum_probs=80.2
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
-.+.++||+-||+|.++++.+..+...++.||.+...+...++++.. -+....+..+.+|+...-... ...
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~--------l~~~~~~~v~~~d~~~~l~~~-~~~ 111 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEK--------LGLEDKIRVIKGDAFKFLLKL-AKK 111 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHH--------HT-GGGEEEEESSHHHHHHHH-HHC
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHH--------hCCCcceeeeccCHHHHHHhh-ccc
Confidence 47899999999999999998888888999999999999999999872 233445788888865432110 003
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHH--hhccCCeEEEEEeCCh
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPDA 209 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~--~~lk~gG~li~~~~~~ 209 (224)
...||+|++.-....- .....++..+. .+|+++|.+++.+...
T Consensus 112 ~~~fDiIflDPPY~~~----~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 112 GEKFDIIFLDPPYAKG----LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp TS-EEEEEE--STTSC----HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCceEEEECCCcccc----hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 5899999998765432 12466777776 7999999999987543
No 182
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.90 E-value=3.9e-08 Score=78.20 Aligned_cols=85 Identities=22% Similarity=0.188 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (224)
Q Consensus 72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (224)
.+..++......++.+|||||||+|.++..++... ..++++|+++.+++.++.++.. ..++.++++|+
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~-----------~~~v~v~~~D~ 84 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL-----------YERLEVIEGDA 84 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc-----------CCcEEEEECch
Confidence 34445555555678899999999999999988655 4799999999999999887641 34589999999
Q ss_pred cccccccccCCCCCee---EEEEcccc
Q 027388 152 YEVHLDKVLADDAPFD---ICSCQFAM 175 (224)
Q Consensus 152 ~~~~~~~~~~~~~~~D---~i~~~~~l 175 (224)
.+.+.. .+| +|+++..+
T Consensus 85 ~~~~~~-------~~d~~~~vvsNlPy 104 (253)
T TIGR00755 85 LKVDLP-------DFPKQLKVVSNLPY 104 (253)
T ss_pred hcCChh-------HcCCcceEEEcCCh
Confidence 887652 455 77776554
No 183
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=6.3e-09 Score=81.71 Aligned_cols=99 Identities=26% Similarity=0.426 Sum_probs=80.3
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
..+..++|+|||.|.++.. .....++|.|++...+.-+++.-. .....+|+.+++. .
T Consensus 44 ~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~~~---------------~~~~~ad~l~~p~-----~ 100 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRSGG---------------DNVCRADALKLPF-----R 100 (293)
T ss_pred CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccCCC---------------ceeehhhhhcCCC-----C
Confidence 4578899999999976643 244578899999988888865422 2678899988887 6
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
..+||.+++..++||+ ++......+++++.+.++|||...+.
T Consensus 101 ~~s~d~~lsiavihhl-sT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 101 EESFDAALSIAVIHHL-STRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred CCccccchhhhhhhhh-hhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 8999999999999997 56677889999999999999986654
No 184
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.82 E-value=2.4e-08 Score=80.85 Aligned_cols=95 Identities=21% Similarity=0.238 Sum_probs=81.3
Q ss_pred CeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhc-cCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY-NGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (224)
...+|+|.|.|+.+..++. .+..+-++++....+..+...+ . .|..+.+|+... . .
T Consensus 179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~~--------------gV~~v~gdmfq~-~-------P 235 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLAP--------------GVEHVAGDMFQD-T-------P 235 (342)
T ss_pred ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhcC--------------Ccceeccccccc-C-------C
Confidence 7899999999999999987 6668899999999888887765 3 278888887654 3 2
Q ss_pred CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 165 ~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.-|+|++.+++||+ +.++..++|++|+..|+|||.+++.
T Consensus 236 ~~daI~mkWiLhdw--tDedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 236 KGDAIWMKWILHDW--TDEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred CcCeEEEEeecccC--ChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 45699999999999 8899999999999999999998875
No 185
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=2.4e-07 Score=68.17 Aligned_cols=123 Identities=16% Similarity=0.248 Sum_probs=87.3
Q ss_pred CCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
....+||||||+|..+..++.. ....+.++|+++.+++..++.+..+ ...+..+++|+..--
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n----------~~~~~~V~tdl~~~l------ 106 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN----------RVHIDVVRTDLLSGL------ 106 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc----------CCccceeehhHHhhh------
Confidence 4788999999999988888764 3446779999999998877766521 333677888875443
Q ss_pred CCCCeeEEEEcccc----------c-----cc--cCCHHHHHHHHHHHHhhccCCeEEEEEeCC---hHHHHHHhhhccc
Q 027388 162 DDAPFDICSCQFAM----------H-----YS--WSTEARARRALANVSALLRPGGTFIGTMPD---ANVIIKKLREEHF 221 (224)
Q Consensus 162 ~~~~~D~i~~~~~l----------~-----~~--~~~~~~~~~~l~~~~~~lk~gG~li~~~~~---~~~~~~~~~~~gf 221 (224)
..+++|+++.+-.. + |. .++..-...++..+-.+|.|.|++++..-. +..+.+++++.||
T Consensus 107 ~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~ 186 (209)
T KOG3191|consen 107 RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGY 186 (209)
T ss_pred ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhccc
Confidence 35899999866411 0 10 112333567888888999999999987553 4567778888887
Q ss_pred c
Q 027388 222 C 222 (224)
Q Consensus 222 ~ 222 (224)
.
T Consensus 187 ~ 187 (209)
T KOG3191|consen 187 G 187 (209)
T ss_pred c
Confidence 4
No 186
>PLN02823 spermine synthase
Probab=98.81 E-value=5e-08 Score=80.22 Aligned_cols=115 Identities=18% Similarity=0.191 Sum_probs=81.1
Q ss_pred cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..+++||.||+|.|..+..+++. ...+++.||+++.+++.|++.+.... ..--+.+++++.+|.......
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~-----~~~~dprv~v~~~Da~~~L~~---- 172 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNR-----EAFCDKRLELIINDARAELEK---- 172 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccc-----ccccCCceEEEEChhHHHHhh----
Confidence 35689999999999999888764 35689999999999999999876210 001246789999998775421
Q ss_pred CCCCeeEEEEccccccccCCH--HHHHHHHH-HHHhhccCCeEEEEEe
Q 027388 162 DDAPFDICSCQFAMHYSWSTE--ARARRALA-NVSALLRPGGTFIGTM 206 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~--~~~~~~l~-~~~~~lk~gG~li~~~ 206 (224)
..++||+|++...-..-..+. ---..+++ .+.+.|+|||++++..
T Consensus 173 ~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 173 RDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred CCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 357899999863210000000 01246777 8999999999998763
No 187
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.77 E-value=5e-07 Score=73.74 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=80.7
Q ss_pred hcCCCeEEEecCCCchhHHHHHhh-----cCCeEEEEeCChhHHHHHHHhccCCcccccccccCC-CCeeEEeccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVH 155 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~-----~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~ 155 (224)
..++..|+|+|||+|+-+..++.. ....|+++|+|..+++.+..++.. ...+ ..+.-+++|+.+..
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~--------~~~p~l~v~~l~gdy~~~l 145 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL--------GNFSHVRCAGLLGTYDDGL 145 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh--------ccCCCeEEEEEEecHHHHH
Confidence 356678999999999987766543 235799999999999999998861 1212 23445788875431
Q ss_pred c--ccccCCCCCeeEEEEcc-ccccccCCHHHHHHHHHHHHh-hccCCeEEEEEe
Q 027388 156 L--DKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSA-LLRPGGTFIGTM 206 (224)
Q Consensus 156 ~--~~~~~~~~~~D~i~~~~-~l~~~~~~~~~~~~~l~~~~~-~lk~gG~li~~~ 206 (224)
. .... ......+++..+ ++.++ ...+...+|+++++ .|+|||.|++..
T Consensus 146 ~~l~~~~-~~~~~r~~~flGSsiGNf--~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 146 AWLKRPE-NRSRPTTILWLGSSIGNF--SRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred hhccccc-ccCCccEEEEeCccccCC--CHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 1 0000 123456776655 77777 67889999999999 999999999863
No 188
>PRK04148 hypothetical protein; Provisional
Probab=98.75 E-value=3.2e-07 Score=65.03 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=68.4
Q ss_pred cCCCeEEEecCCCch-hHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~-~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
.++.++||||||+|. .+..+. ....+|+++|+++..++.+++.. +.++.+|+.+-...
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~-~~G~~ViaIDi~~~aV~~a~~~~----------------~~~v~dDlf~p~~~---- 73 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLK-ESGFDVIVIDINEKAVEKAKKLG----------------LNAFVDDLFNPNLE---- 73 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHH-HCCCEEEEEECCHHHHHHHHHhC----------------CeEEECcCCCCCHH----
Confidence 456889999999996 666665 44569999999999999887663 57889998765442
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.-..+|+|.+... ..++...+.++.+.+. .-+++.
T Consensus 74 ~y~~a~liysirp-------p~el~~~~~~la~~~~--~~~~i~ 108 (134)
T PRK04148 74 IYKNAKLIYSIRP-------PRDLQPFILELAKKIN--VPLIIK 108 (134)
T ss_pred HHhcCCEEEEeCC-------CHHHHHHHHHHHHHcC--CCEEEE
Confidence 2478999998763 3667777777776554 345544
No 189
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.74 E-value=1.1e-07 Score=76.15 Aligned_cols=112 Identities=18% Similarity=0.153 Sum_probs=83.7
Q ss_pred CCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 85 GDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
+++||-||.|.|..+..+++.. ..+++.||+++..++.+++.+...... ..+.+++++..|..++-.. ..
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~-----~~dpRv~i~i~Dg~~~v~~----~~ 147 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG-----ADDPRVEIIIDDGVEFLRD----CE 147 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc-----cCCCceEEEeccHHHHHHh----CC
Confidence 3799999999999999998764 568999999999999999998732110 1157789999998776432 23
Q ss_pred CCeeEEEEccccccccCCHH--HHHHHHHHHHhhccCCeEEEEEeC
Q 027388 164 APFDICSCQFAMHYSWSTEA--RARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~--~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
..||+|++...=. . .+.+ .-..+++.+.+.|+++|+++..+.
T Consensus 148 ~~fDvIi~D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 148 EKFDVIIVDSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred CcCCEEEEcCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 4899999765321 0 0000 126799999999999999998843
No 190
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.73 E-value=4.3e-08 Score=75.12 Aligned_cols=126 Identities=20% Similarity=0.190 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCccccccccc-CCCCeeEEe
Q 027388 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSFPARLIC 148 (224)
Q Consensus 71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~v~~~~ 148 (224)
..+..++....+.++..++|||||.|......+.. ...+.+|||+.+...+.|+......... .+..+ ....+.+.+
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~-~~~~g~~~~~v~l~~ 107 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKR-MKHYGKRPGKVELIH 107 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHH-HHHCTB---EEEEEC
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHH-HHHhhcccccceeec
Confidence 34555666666778999999999999988876643 5566999999999888877644311000 00001 123477888
Q ss_pred ccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 149 GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 149 ~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
+|+.+.+.... .-...|+|+++.... .++....|.++...||+|..+|-
T Consensus 108 gdfl~~~~~~~--~~s~AdvVf~Nn~~F-----~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 108 GDFLDPDFVKD--IWSDADVVFVNNTCF-----DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp S-TTTHHHHHH--HGHC-SEEEE--TTT------HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cCccccHhHhh--hhcCCCEEEEecccc-----CHHHHHHHHHHHhcCCCCCEEEE
Confidence 99876542111 014689999987653 25677788888899999877664
No 191
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.8e-08 Score=71.29 Aligned_cols=79 Identities=23% Similarity=0.311 Sum_probs=64.4
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
-.+++++|+|||.|.+...........++|+|+.+.+++.+.+++. ....++.++++|+.+... .
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNae----------EfEvqidlLqcdildle~-----~ 111 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAE----------EFEVQIDLLQCDILDLEL-----K 111 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchH----------Hhhhhhheeeeeccchhc-----c
Confidence 4789999999999998876665567789999999999999999977 234456899999987765 4
Q ss_pred CCCeeEEEEccccc
Q 027388 163 DAPFDICSCQFAMH 176 (224)
Q Consensus 163 ~~~~D~i~~~~~l~ 176 (224)
.+-||.++.+--+.
T Consensus 112 ~g~fDtaviNppFG 125 (185)
T KOG3420|consen 112 GGIFDTAVINPPFG 125 (185)
T ss_pred CCeEeeEEecCCCC
Confidence 68899999876543
No 192
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.71 E-value=2.3e-08 Score=84.42 Aligned_cols=119 Identities=17% Similarity=0.174 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHhh----cCCCeEEEecCCCchhHHHHHhhcCCeEE--EEeCChhHHHHHHHhccCCcccccccccCCC
Q 027388 69 LNNWIKSVLVQLYA----RRGDVVLDLACGKGGDLIKWDKAKIGYYV--GIDIAEGSIEDCRTRYNGDADHHQRRKKFSF 142 (224)
Q Consensus 69 ~~~~~~~~~~~~~~----~~~~~iLDiGcG~G~~~~~l~~~~~~~~~--gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~ 142 (224)
...|+..+...+.. ..-+++||+|||+|.++..++..+...+. .-|..+..++.|.++.- ..
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGv------------pa 165 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGV------------PA 165 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCc------------ch
Confidence 44555544443332 22357999999999999999866543322 23455556666665522 11
Q ss_pred CeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (224)
Q Consensus 143 ~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~ 209 (224)
.+-......+++ +.+.||+|.|..++... . ..-.-+|-++.|+|+|||+++++.|..
T Consensus 166 --~~~~~~s~rLPf-----p~~~fDmvHcsrc~i~W--~-~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 166 --MIGVLGSQRLPF-----PSNAFDMVHCSRCLIPW--H-PNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred --hhhhhccccccC-----Cccchhhhhcccccccc--h-hcccceeehhhhhhccCceEEecCCcc
Confidence 111112345666 78999999998876543 1 122458899999999999999997753
No 193
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.70 E-value=2.2e-06 Score=68.11 Aligned_cols=132 Identities=18% Similarity=0.143 Sum_probs=89.9
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccc-------------ccc-------------
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH-------------QRR------------- 137 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~-------------~~~------------- 137 (224)
.+.+||=-|||.|+++..++..++ .+.|.|.|-.|+-..+-.+......+ ...
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 457899999999999999987765 89999999999877665544211000 000
Q ss_pred -----ccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE-------
Q 027388 138 -----KKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT------- 205 (224)
Q Consensus 138 -----~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~------- 205 (224)
.....++....+|+.++-.... ..+.||+|+..+.+ ++..+...+|..+.++|||||++|=-
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~--~~~~~d~VvT~FFI----DTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~ 208 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDE--NKGSFDVVVTCFFI----DTAENIIEYIETIEHLLKPGGYWINFGPLLYHF 208 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcc--cCCcccEEEEEEEe----echHHHHHHHHHHHHHhccCCEEEecCCccccC
Confidence 0011234455566555432100 13799999988655 45688999999999999999988732
Q ss_pred -----------eCChHHHHHHhhhcccc
Q 027388 206 -----------MPDANVIIKKLREEHFC 222 (224)
Q Consensus 206 -----------~~~~~~~~~~~~~~gf~ 222 (224)
....+.|.......||.
T Consensus 209 ~~~~~~~~~sveLs~eEi~~l~~~~GF~ 236 (270)
T PF07942_consen 209 EPMSIPNEMSVELSLEEIKELIEKLGFE 236 (270)
T ss_pred CCCCCCCCcccCCCHHHHHHHHHHCCCE
Confidence 11346788888888875
No 194
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.70 E-value=1.4e-07 Score=77.28 Aligned_cols=145 Identities=23% Similarity=0.310 Sum_probs=86.6
Q ss_pred CceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh--------cCCeEEEEeCChhHHHHHHHhccCCccc
Q 027388 62 PIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--------KIGYYVGIDIAEGSIEDCRTRYNGDADH 133 (224)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--------~~~~~~gvD~s~~~~~~a~~~~~~~~~~ 133 (224)
.++++..+..++..++ ...++.+|+|.+||+|.++..+... ....++|+|+++.++..|+.++.-.
T Consensus 27 ~~~TP~~i~~l~~~~~---~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~--- 100 (311)
T PF02384_consen 27 QFYTPREIVDLMVKLL---NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH--- 100 (311)
T ss_dssp GC---HHHHHHHHHHH---TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT---
T ss_pred eeehHHHHHHHHHhhh---hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh---
Confidence 4556666655555444 4466778999999999999887652 4567999999999999998775411
Q ss_pred ccccccCCC-CeeEEeccccccccccccCCCCCeeEEEEccccccc-c----------------CCHHHHHHHHHHHHhh
Q 027388 134 HQRRKKFSF-PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS-W----------------STEARARRALANVSAL 195 (224)
Q Consensus 134 ~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~-~----------------~~~~~~~~~l~~~~~~ 195 (224)
+... ...+.++|....+... ....||+|+++-.+... + .....-..++..+.+.
T Consensus 101 -----~~~~~~~~i~~~d~l~~~~~~---~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~ 172 (311)
T PF02384_consen 101 -----GIDNSNINIIQGDSLENDKFI---KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSL 172 (311)
T ss_dssp -----THHCBGCEEEES-TTTSHSCT---ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHT
T ss_pred -----ccccccccccccccccccccc---cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhh
Confidence 1111 1347777765444310 24799999987543322 0 0111224588999999
Q ss_pred ccCCeEEEEEeCCh--------HHHHHHhhhcc
Q 027388 196 LRPGGTFIGTMPDA--------NVIIKKLREEH 220 (224)
Q Consensus 196 lk~gG~li~~~~~~--------~~~~~~~~~~g 220 (224)
|++||.+.+.+|+. ..+++.|.+.+
T Consensus 173 Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~ 205 (311)
T PF02384_consen 173 LKPGGRAAIILPNGFLFSSSSEKKIRKYLLENG 205 (311)
T ss_dssp EEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHHE
T ss_pred cccccceeEEecchhhhccchHHHHHHHHHhhc
Confidence 99999987776641 34555555544
No 195
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.69 E-value=1.6e-07 Score=71.58 Aligned_cols=100 Identities=23% Similarity=0.299 Sum_probs=71.8
Q ss_pred hcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
..++.+|+|+.||-|.+++.++.. ....|+++|+++..++.+++++. ...+...+..+++|..++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~--------lNkv~~~i~~~~~D~~~~~~---- 166 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIR--------LNKVENRIEVINGDAREFLP---- 166 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHH--------HTT-TTTEEEEES-GGG-------
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHH--------HcCCCCeEEEEcCCHHHhcC----
Confidence 467899999999999999999863 55679999999999999999987 34666678999999887753
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li 203 (224)
...+|.|++...-. ...++..+..++++||++.
T Consensus 167 --~~~~drvim~lp~~--------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 167 --EGKFDRVIMNLPES--------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp --TT-EEEEEE--TSS--------GGGGHHHHHHHEEEEEEEE
T ss_pred --ccccCEEEECChHH--------HHHHHHHHHHHhcCCcEEE
Confidence 58999999876422 2357788899999999875
No 196
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.69 E-value=1.1e-07 Score=72.77 Aligned_cols=129 Identities=22% Similarity=0.297 Sum_probs=94.2
Q ss_pred hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
.+.+.+|||.+.|-|..++..++.+...|+.++.+++.++.|+-+--+. ......++++.+|+.++--. +
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr-------~l~~~~i~iilGD~~e~V~~---~ 201 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSR-------ELFEIAIKIILGDAYEVVKD---F 201 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCc-------cccccccEEecccHHHHHhc---C
Confidence 4578999999999999999888777779999999999999987553221 11123578999998764321 1
Q ss_pred CCCCeeEEEEccc-cccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh----------HHHHHHhhhcccc
Q 027388 162 DDAPFDICSCQFA-MHYSWSTEARARRALANVSALLRPGGTFIGTMPDA----------NVIIKKLREEHFC 222 (224)
Q Consensus 162 ~~~~~D~i~~~~~-l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~----------~~~~~~~~~~gf~ 222 (224)
.+.+||+|+-.-. +.+ ..+-.-..+.++++|+|+|||.++=.+.++ ..+.+.|++.||.
T Consensus 202 ~D~sfDaIiHDPPRfS~--AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~ 271 (287)
T COG2521 202 DDESFDAIIHDPPRFSL--AGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFE 271 (287)
T ss_pred CccccceEeeCCCccch--hhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCce
Confidence 5688999985421 111 123345789999999999999988665443 4788899999985
No 197
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.67 E-value=1.7e-07 Score=70.67 Aligned_cols=97 Identities=20% Similarity=0.188 Sum_probs=74.5
Q ss_pred eEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCC
Q 027388 87 VVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165 (224)
Q Consensus 87 ~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 165 (224)
+++|||+|.|.-++.++-. ...+++.+|.+..-+...+...... ++. |++++++.+++ .. ....
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L--------~L~-nv~v~~~R~E~-~~-----~~~~ 115 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL--------GLS-NVEVINGRAEE-PE-----YRES 115 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH--------T-S-SEEEEES-HHH-TT-----TTT-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh--------CCC-CEEEEEeeecc-cc-----cCCC
Confidence 8999999999999988754 3457999999999888877776532 222 59999999987 22 4689
Q ss_pred eeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 166 FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 166 ~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
||+|++..+- ....++.-+...+++||.+++.-
T Consensus 116 fd~v~aRAv~--------~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 116 FDVVTARAVA--------PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp EEEEEEESSS--------SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ccEEEeehhc--------CHHHHHHHHHHhcCCCCEEEEEc
Confidence 9999988764 24577888899999999888764
No 198
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.67 E-value=3.3e-07 Score=69.70 Aligned_cols=128 Identities=17% Similarity=0.224 Sum_probs=91.8
Q ss_pred hhhhHHHHHHHHHHHh-hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCe
Q 027388 66 LKKLNNWIKSVLVQLY-ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA 144 (224)
Q Consensus 66 ~~~~~~~~~~~~~~~~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v 144 (224)
-+....|++....... .....++|||||=+..+.... ...-.|+.||+.+ + .-
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~--~~~fdvt~IDLns-------~-----------------~~ 85 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST--SGWFDVTRIDLNS-------Q-----------------HP 85 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCcccc--cCceeeEEeecCC-------C-----------------CC
Confidence 3566677666644321 123479999999866555432 2223599999876 0 13
Q ss_pred eEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeE-----EEEEeCC----------h
Q 027388 145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT-----FIGTMPD----------A 209 (224)
Q Consensus 145 ~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~-----li~~~~~----------~ 209 (224)
.+.++|+.+.+++.. +.+.||+|.++.||.++ ++....-..++++.+.|+++|. |++..|. .
T Consensus 86 ~I~qqDFm~rplp~~--~~e~FdvIs~SLVLNfV-P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~ 162 (219)
T PF11968_consen 86 GILQQDFMERPLPKN--ESEKFDVISLSLVLNFV-PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTE 162 (219)
T ss_pred CceeeccccCCCCCC--cccceeEEEEEEEEeeC-CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCH
Confidence 567888888766322 46899999999999998 3456788899999999999999 8888763 4
Q ss_pred HHHHHHhhhcccc
Q 027388 210 NVIIKKLREEHFC 222 (224)
Q Consensus 210 ~~~~~~~~~~gf~ 222 (224)
..+...+...||.
T Consensus 163 ~~l~~im~~LGf~ 175 (219)
T PF11968_consen 163 ERLREIMESLGFT 175 (219)
T ss_pred HHHHHHHHhCCcE
Confidence 5677788888875
No 199
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.66 E-value=1.5e-07 Score=74.43 Aligned_cols=115 Identities=16% Similarity=0.150 Sum_probs=80.0
Q ss_pred cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..+++||=||.|.|..+..+++.. ..+++.||+++..++.|++.+.... ...-+.+++++.+|...+-..
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~-----~~~~d~r~~i~~~Dg~~~l~~---- 145 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFS-----EGLDDPRVRIIIGDGRKFLKE---- 145 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHH-----TTGGSTTEEEEESTHHHHHHT----
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhc-----cccCCCceEEEEhhhHHHHHh----
Confidence 468999999999999999987654 5689999999999999999875210 001256799999998765432
Q ss_pred CCC-CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 162 DDA-PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 162 ~~~-~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
..+ .||+|+....-.......---..+++.+++.|+|||++++..
T Consensus 146 ~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 146 TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 234 899999754321100000012579999999999999999874
No 200
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.66 E-value=3.6e-07 Score=78.41 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=82.6
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
.+.++.+|||++||.|.-+..++.. +.+.++++|+++..++.+++++.. .++ .++.+...|...+...
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r--------~G~-~nv~v~~~D~~~~~~~- 179 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR--------CGV-SNVALTHFDGRVFGAA- 179 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH--------cCC-CeEEEEeCchhhhhhh-
Confidence 4568899999999999999988764 346899999999999999999873 222 2477788887654321
Q ss_pred ccCCCCCeeEEE----Ecc--ccccc------cCCH-------HHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 159 VLADDAPFDICS----CQF--AMHYS------WSTE-------ARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 159 ~~~~~~~~D~i~----~~~--~l~~~------~~~~-------~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
....||.|+ |++ ++..- + +. .-+..+|....+.|||||+|+.+|..
T Consensus 180 ---~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~-s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 180 ---LPETFDAILLDAPCSGEGTVRKDPDALKNW-SPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred ---chhhcCeEEEcCCCCCCcccccCHHHhhhC-CHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 246799999 432 11110 0 11 12467899999999999999998774
No 201
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.65 E-value=1.8e-07 Score=73.02 Aligned_cols=86 Identities=22% Similarity=0.322 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccc
Q 027388 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152 (224)
Q Consensus 73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 152 (224)
+..++.....++++.|||+|.|||.++..+++ ...+|+++|+++.|+....+++.+ .+.....+++++|+.
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe-~~kkVvA~E~Dprmvael~krv~g--------tp~~~kLqV~~gD~l 117 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLE-AGKKVVAVEIDPRMVAELEKRVQG--------TPKSGKLQVLHGDFL 117 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHH-hcCeEEEEecCcHHHHHHHHHhcC--------CCccceeeEEecccc
Confidence 34455556678899999999999999999985 445999999999999999999873 233456899999998
Q ss_pred ccccccccCCCCCeeEEEEccc
Q 027388 153 EVHLDKVLADDAPFDICSCQFA 174 (224)
Q Consensus 153 ~~~~~~~~~~~~~~D~i~~~~~ 174 (224)
..++ ..||.++++..
T Consensus 118 K~d~-------P~fd~cVsNlP 132 (315)
T KOG0820|consen 118 KTDL-------PRFDGCVSNLP 132 (315)
T ss_pred cCCC-------cccceeeccCC
Confidence 7764 57999998653
No 202
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.62 E-value=3.1e-07 Score=79.88 Aligned_cols=125 Identities=12% Similarity=0.149 Sum_probs=87.1
Q ss_pred CCCeEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+..+||||||.|.++..++...+ ..++|+|++...+..+.+..... ++ .|+.+++.|+..+.. ..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~--------~l-~N~~~~~~~~~~~~~---~~~ 414 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ--------NI-TNFLLFPNNLDLILN---DLP 414 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc--------CC-CeEEEEcCCHHHHHH---hcC
Confidence 467899999999999999987644 56889999999888887776522 22 357788777643321 115
Q ss_pred CCCeeEEEEccccccccC----CHHHHHHHHHHHHhhccCCeEEEEEeCChHHH---HHHhhhcc
Q 027388 163 DAPFDICSCQFAMHYSWS----TEARARRALANVSALLRPGGTFIGTMPDANVI---IKKLREEH 220 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~----~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~---~~~~~~~g 220 (224)
++++|.|+.++.==|.-. ..=-...++..+.++|+|||.+.+.|-+.+.. ++.+.+.+
T Consensus 415 ~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~ 479 (506)
T PRK01544 415 NNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNG 479 (506)
T ss_pred cccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCC
Confidence 688999998764222100 00013679999999999999999999876544 44444443
No 203
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.60 E-value=1.9e-07 Score=75.32 Aligned_cols=89 Identities=16% Similarity=0.122 Sum_probs=66.9
Q ss_pred HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (224)
Q Consensus 73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d 150 (224)
+..++..+.+.++..+||++||.|+++..++... .++|+|+|.++.+++.+++++. . ..++.++++|
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~----------~-~~ri~~i~~~ 76 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK----------P-FGRFTLVHGN 76 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc----------c-CCcEEEEeCC
Confidence 3445555556678899999999999999998764 3789999999999999998876 1 3468999999
Q ss_pred ccccccccccCCCCCeeEEEEcc
Q 027388 151 CYEVHLDKVLADDAPFDICSCQF 173 (224)
Q Consensus 151 ~~~~~~~~~~~~~~~~D~i~~~~ 173 (224)
+.++...... ...++|.|++..
T Consensus 77 f~~l~~~l~~-~~~~vDgIl~DL 98 (296)
T PRK00050 77 FSNLKEVLAE-GLGKVDGILLDL 98 (296)
T ss_pred HHHHHHHHHc-CCCccCEEEECC
Confidence 8876421100 112799998653
No 204
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.60 E-value=1.1e-06 Score=73.55 Aligned_cols=111 Identities=13% Similarity=0.135 Sum_probs=72.4
Q ss_pred CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC---
Q 027388 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA--- 161 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--- 161 (224)
+.++||++||+|.++..++. ...++++||.++.+++.+++++.. .++. ++.++++|+.+.... ...
T Consensus 207 ~~~vLDl~~G~G~~sl~la~-~~~~v~~vE~~~~ai~~a~~N~~~--------~~~~-~v~~~~~d~~~~l~~-~~~~~~ 275 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALAR-NFRRVLATEISKPSVAAAQYNIAA--------NGID-NVQIIRMSAEEFTQA-MNGVRE 275 (362)
T ss_pred CCeEEEEeccccHHHHHHHh-hCCEEEEEECCHHHHHHHHHHHHH--------hCCC-cEEEEECCHHHHHHH-Hhhccc
Confidence 35799999999999998764 456899999999999999999762 2332 589999998764210 000
Q ss_pred ---------CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHh
Q 027388 162 ---------DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL 216 (224)
Q Consensus 162 ---------~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~ 216 (224)
....||+|+..-.-.-+ ...++..+.+ ++++++++. |+..+.+.+
T Consensus 276 ~~~~~~~~~~~~~~D~v~lDPPR~G~------~~~~l~~l~~---~~~ivyvSC-~p~tlarDl 329 (362)
T PRK05031 276 FNRLKGIDLKSYNFSTIFVDPPRAGL------DDETLKLVQA---YERILYISC-NPETLCENL 329 (362)
T ss_pred ccccccccccCCCCCEEEECCCCCCC------cHHHHHHHHc---cCCEEEEEe-CHHHHHHHH
Confidence 01258999876431111 1233344433 677777776 445454433
No 205
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.59 E-value=1.2e-06 Score=79.14 Aligned_cols=117 Identities=16% Similarity=0.142 Sum_probs=83.8
Q ss_pred cCCCeEEEecCCCchhHHHHHhh-------------------------------------------cCCeEEEEeCChhH
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKA-------------------------------------------KIGYYVGIDIAEGS 119 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~-------------------------------------------~~~~~~gvD~s~~~ 119 (224)
.++..++|.+||+|.++++.+.. ....++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 45789999999999999886541 01258999999999
Q ss_pred HHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhcc--
Q 027388 120 IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR-- 197 (224)
Q Consensus 120 ~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk-- 197 (224)
++.|++++. ..++...+.+.++|+.+++... ..++||+|+++-....-.....+...+...+-+.++
T Consensus 269 v~~A~~N~~--------~~g~~~~i~~~~~D~~~~~~~~---~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 269 IQAARKNAR--------RAGVAELITFEVKDVADLKNPL---PKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred HHHHHHHHH--------HcCCCcceEEEeCChhhccccc---ccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 999999987 3455666899999998775411 235799999997654333333455555444444444
Q ss_pred -CCeEEEEEeCChH
Q 027388 198 -PGGTFIGTMPDAN 210 (224)
Q Consensus 198 -~gG~li~~~~~~~ 210 (224)
+|+.+++-+++..
T Consensus 338 ~~g~~~~llt~~~~ 351 (702)
T PRK11783 338 FGGWNAALFSSSPE 351 (702)
T ss_pred CCCCeEEEEeCCHH
Confidence 8888888887754
No 206
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.59 E-value=1.8e-06 Score=71.24 Aligned_cols=127 Identities=17% Similarity=0.138 Sum_probs=92.6
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhhcC---------------------------------C-------eEEEEeCChhHH
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKAKI---------------------------------G-------YYVGIDIAEGSI 120 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~---------------------------------~-------~~~gvD~s~~~~ 120 (224)
...++..++|.=||+|.+.++.+.... . .++|+|+++.++
T Consensus 188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i 267 (381)
T COG0116 188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI 267 (381)
T ss_pred CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence 445667899999999999998764321 1 377999999999
Q ss_pred HHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHH----HHHHHHHHHHhhc
Q 027388 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEA----RARRALANVSALL 196 (224)
Q Consensus 121 ~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~----~~~~~l~~~~~~l 196 (224)
+.|+.++. ..++...|.|.++|+..+.. +.+.+|+|+|+-....-+.... -...+.+.+++.+
T Consensus 268 ~~Ak~NA~--------~AGv~d~I~f~~~d~~~l~~-----~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 268 EGAKANAR--------AAGVGDLIEFKQADATDLKE-----PLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred HHHHHHHH--------hcCCCceEEEEEcchhhCCC-----CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHh
Confidence 99999987 57788889999999998875 2379999999875443222322 2345566777777
Q ss_pred cCCeEEEEEeCChHHHHHHhhhcc
Q 027388 197 RPGGTFIGTMPDANVIIKKLREEH 220 (224)
Q Consensus 197 k~gG~li~~~~~~~~~~~~~~~~g 220 (224)
+-.+.+++++.........++..+
T Consensus 335 ~~ws~~v~tt~e~~~~~~~~ra~~ 358 (381)
T COG0116 335 AGWSRYVFTTSEDLLFCLGLRADK 358 (381)
T ss_pred cCCceEEEEccHHHHHHHhhhhcc
Confidence 777888888876555554554443
No 207
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.59 E-value=4.7e-07 Score=75.93 Aligned_cols=105 Identities=15% Similarity=0.183 Sum_probs=77.6
Q ss_pred CCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
+.+|||++||+|..++.++.. ...+|+++|+++.+++.+++++..+ ++. ++.+.++|+..+.. ..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N--------~~~-~~~v~~~Da~~~l~-----~~ 123 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN--------GLE-NEKVFNKDANALLH-----EE 123 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--------CCC-ceEEEhhhHHHHHh-----hc
Confidence 468999999999999998754 3458999999999999999998632 222 35688888865432 13
Q ss_pred CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHH
Q 027388 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV 211 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~ 211 (224)
+.||+|++.- .. . ...++....+.+++||+++++.-+...
T Consensus 124 ~~fD~V~lDP-~G----s---~~~~l~~al~~~~~~gilyvSAtD~~~ 163 (382)
T PRK04338 124 RKFDVVDIDP-FG----S---PAPFLDSAIRSVKRGGLLCVTATDTAP 163 (382)
T ss_pred CCCCEEEECC-CC----C---cHHHHHHHHHHhcCCCEEEEEecCchh
Confidence 5799999864 21 1 245777767778999999998555433
No 208
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.59 E-value=3.7e-07 Score=68.90 Aligned_cols=104 Identities=26% Similarity=0.271 Sum_probs=62.9
Q ss_pred CCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc----
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD---- 157 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---- 157 (224)
.+.++||+||++|+++..++... ...++|+|+.+. .. ...+.++++|+.+....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~--------------~~~~~~i~~d~~~~~~~~~i~ 82 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DP--------------LQNVSFIQGDITNPENIKDIR 82 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS---------------TTEEBTTGGGEEEEHSHHGG
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc------cc--------------ccceeeeecccchhhHHHhhh
Confidence 45899999999999999998765 578999999885 00 12355556665432111
Q ss_pred ccc-CCCCCeeEEEEccccccc----cC---CHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 158 KVL-ADDAPFDICSCQFAMHYS----WS---TEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 158 ~~~-~~~~~~D~i~~~~~l~~~----~~---~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
... .....+|+|+|..+...- .+ ...-....+.-+...|++||.+++.+.
T Consensus 83 ~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 83 KLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp GSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred hhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 000 012699999998832211 00 112344555666678999999988754
No 209
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.8e-07 Score=69.39 Aligned_cols=109 Identities=20% Similarity=0.279 Sum_probs=75.6
Q ss_pred hcCCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccC-CCCeeEEeccccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLD 157 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~ 157 (224)
+.++.++||+|.|+|.++.-++. ..+...+|||.-++.++.+++++...--.-+....+ ..++.++.+|....-.
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~- 158 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA- 158 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC-
Confidence 68999999999999988776553 244456999999999999999986211000000001 1346778888776543
Q ss_pred cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
+..+||.|.+..... ...+++...|++||.+++-
T Consensus 159 ----e~a~YDaIhvGAaa~----------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 159 ----EQAPYDAIHVGAAAS----------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ----ccCCcceEEEccCcc----------ccHHHHHHhhccCCeEEEe
Confidence 578999999874432 3446677888999988874
No 210
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.58 E-value=9.6e-07 Score=73.53 Aligned_cols=112 Identities=12% Similarity=0.074 Sum_probs=72.6
Q ss_pred CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc---C
Q 027388 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL---A 161 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~ 161 (224)
+.+|||++||+|.++..++.. ..++++||+++.+++.|++++.. .++. ++.++++|+.+....... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~--------~~~~-~v~~~~~d~~~~~~~~~~~~~~ 267 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAA--------NNID-NVQIIRMSAEEFTQAMNGVREF 267 (353)
T ss_pred CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHH--------cCCC-cEEEEEcCHHHHHHHHhhcccc
Confidence 347999999999999987744 46999999999999999999863 2332 589999998764321000 0
Q ss_pred ---C-----CCCeeEEEEccccccccCCHHH-HHHHHHHHHhhccCCeEEEEEeCChHHHHHHhh
Q 027388 162 ---D-----DAPFDICSCQFAMHYSWSTEAR-ARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (224)
Q Consensus 162 ---~-----~~~~D~i~~~~~l~~~~~~~~~-~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~ 217 (224)
. ...||+|+..-.= .. ...++..+. +++++++++. ++..+.+.+.
T Consensus 268 ~~~~~~~~~~~~~d~v~lDPPR-------~G~~~~~l~~l~---~~~~ivYvsC-~p~tlaRDl~ 321 (353)
T TIGR02143 268 RRLKGIDLKSYNCSTIFVDPPR-------AGLDPDTCKLVQ---AYERILYISC-NPETLKANLE 321 (353)
T ss_pred ccccccccccCCCCEEEECCCC-------CCCcHHHHHHHH---cCCcEEEEEc-CHHHHHHHHH
Confidence 0 1237998875431 11 123334443 3677777776 5555555444
No 211
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.58 E-value=1e-06 Score=70.83 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=71.4
Q ss_pred cCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
..+.+|||+|||+|.-+..+... ...+++++|.|+.|++.++..+..... ...... .........
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--------~~~~~~-~~~~~~~~~---- 98 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--------NRNAEW-RRVLYRDFL---- 98 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--------cccchh-hhhhhcccc----
Confidence 46789999999999766544332 456799999999999999887662110 000101 111111001
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
.....|+|++.++|..+.+ .....+++.+.+.+.+ .|++..|.
T Consensus 99 -~~~~~DLvi~s~~L~EL~~--~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 99 -PFPPDDLVIASYVLNELPS--AARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred -cCCCCcEEEEehhhhcCCc--hHHHHHHHHHHHhccC--cEEEEcCC
Confidence 1234499999999998833 7788899999888876 77766543
No 212
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=8.5e-07 Score=69.86 Aligned_cols=89 Identities=18% Similarity=0.160 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (224)
Q Consensus 71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d 150 (224)
..+..++......++..|||||+|.|.++..+++.. ..|+++|+++.+++..++.+. ...+++++.+|
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~-----------~~~n~~vi~~D 84 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA-ARVTAIEIDRRLAEVLKERFA-----------PYDNLTVINGD 84 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEEeCHHHHHHHHHhcc-----------cccceEEEeCc
Confidence 335667777777778999999999999999998554 479999999999999998864 14569999999
Q ss_pred ccccccccccCCCCCeeEEEEcccc
Q 027388 151 CYEVHLDKVLADDAPFDICSCQFAM 175 (224)
Q Consensus 151 ~~~~~~~~~~~~~~~~D~i~~~~~l 175 (224)
+...++... .+++.|+++.-.
T Consensus 85 aLk~d~~~l----~~~~~vVaNlPY 105 (259)
T COG0030 85 ALKFDFPSL----AQPYKVVANLPY 105 (259)
T ss_pred hhcCcchhh----cCCCEEEEcCCC
Confidence 998887311 167888877654
No 213
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.55 E-value=1.7e-06 Score=64.66 Aligned_cols=114 Identities=17% Similarity=0.139 Sum_probs=83.6
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
-.+.++||+-+|+|.++++.+..+...++.||.+...+...++++.. -++..++.++..|+..... ... .
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~--------l~~~~~~~~~~~da~~~L~-~~~-~ 111 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKA--------LGLEGEARVLRNDALRALK-QLG-T 111 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHH--------hCCccceEEEeecHHHHHH-hcC-C
Confidence 47899999999999999999888888999999999999999999872 3444668888888873311 110 2
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHH--HHhhccCCeEEEEEeCCh
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALAN--VSALLRPGGTFIGTMPDA 209 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~--~~~~lk~gG~li~~~~~~ 209 (224)
.++||+|+..-.++. ..-+....+.. -..+|+|+|.+++.+...
T Consensus 112 ~~~FDlVflDPPy~~---~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 112 REPFDLVFLDPPYAK---GLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCcccEEEeCCCCcc---chhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 235999998876652 11222333333 557899999999986643
No 214
>PRK00536 speE spermidine synthase; Provisional
Probab=98.53 E-value=1.4e-06 Score=69.06 Aligned_cols=101 Identities=13% Similarity=0.019 Sum_probs=75.0
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
+.+++||=||.|.|..+.++++.. .+++.||+++.+++.+++.+.... ..--+.+++++.. +.+ . .
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~-----~~~~DpRv~l~~~-~~~--~-----~ 136 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFH-----EVKNNKNFTHAKQ-LLD--L-----D 136 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHH-----HhhcCCCEEEeeh-hhh--c-----c
Confidence 567899999999999999998765 499999999999999999776211 0112445665541 111 0 2
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
.+.||+|++.... ...+.+.+++.|+|||+++...
T Consensus 137 ~~~fDVIIvDs~~---------~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 137 IKKYDLIICLQEP---------DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CCcCCEEEEcCCC---------ChHHHHHHHHhcCCCcEEEECC
Confidence 3689999987531 1467899999999999999853
No 215
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=2.3e-06 Score=66.95 Aligned_cols=129 Identities=17% Similarity=0.192 Sum_probs=95.9
Q ss_pred HHHHHHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (224)
Q Consensus 74 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (224)
..++..+...++.+|||-|.|+|.++-.+++. .-++++.+|+-....+.|.+.+. ..+++.++++.+-|+
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr--------~hgi~~~vt~~hrDV 166 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFR--------EHGIGDNVTVTHRDV 166 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHH--------HhCCCcceEEEEeec
Confidence 33455567789999999999999999988764 45799999999999999999987 567899999999999
Q ss_pred cccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCe-EEEEEeCChHHHH---HHhhhcccc
Q 027388 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIGTMPDANVII---KKLREEHFC 222 (224)
Q Consensus 152 ~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG-~li~~~~~~~~~~---~~~~~~gf~ 222 (224)
....+.. ....+|.|+....- +-.++-.+.+.||.+| +|+.-.|-.+.+. +.+...||+
T Consensus 167 c~~GF~~---ks~~aDaVFLDlPa---------Pw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~ 229 (314)
T KOG2915|consen 167 CGSGFLI---KSLKADAVFLDLPA---------PWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFI 229 (314)
T ss_pred ccCCccc---cccccceEEEcCCC---------hhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCc
Confidence 8766532 35789999876532 2345556666888766 6666566655444 355566775
No 216
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.52 E-value=8e-07 Score=68.22 Aligned_cols=97 Identities=18% Similarity=0.134 Sum_probs=73.6
Q ss_pred CCeEEEecCCCchhHHHHHh-hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 85 GDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~-~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
+++++|||+|.|.-++.++- ....+++.+|....-+...+......+ -.|++++++.++++.. .
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~---------L~nv~i~~~RaE~~~~------~ 132 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG---------LENVEIVHGRAEEFGQ------E 132 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC---------CCCeEEehhhHhhccc------c
Confidence 68999999999999998763 234469999999988877776655322 2249999999998864 2
Q ss_pred CC-eeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 164 AP-FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 164 ~~-~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
.. ||+|++..+. .+..++.-+..++++||.++.
T Consensus 133 ~~~~D~vtsRAva--------~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 133 KKQYDVVTSRAVA--------SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred cccCcEEEeehcc--------chHHHHHHHHHhcccCCcchh
Confidence 34 9999987653 355677778899999888653
No 217
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1.4e-06 Score=74.01 Aligned_cols=120 Identities=21% Similarity=0.261 Sum_probs=84.7
Q ss_pred HHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388 77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (224)
Q Consensus 77 ~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 156 (224)
+..+...++.++||+=||.|.+++.++ ....+|+|+|+++.+++.|+++++.+ ++.+ ++|..++++++..
T Consensus 286 ~~~~~~~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n--------~i~N-~~f~~~~ae~~~~ 355 (432)
T COG2265 286 LEWLELAGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAAN--------GIDN-VEFIAGDAEEFTP 355 (432)
T ss_pred HHHHhhcCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHc--------CCCc-EEEEeCCHHHHhh
Confidence 334444577899999999999999987 56679999999999999999998843 3443 9999999988765
Q ss_pred ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHh
Q 027388 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL 216 (224)
Q Consensus 157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~ 216 (224)
... ....+|.|+..- +......-+-+....++|..+++++. |+..+.+.+
T Consensus 356 ~~~--~~~~~d~VvvDP-------PR~G~~~~~lk~l~~~~p~~IvYVSC-NP~TlaRDl 405 (432)
T COG2265 356 AWW--EGYKPDVVVVDP-------PRAGADREVLKQLAKLKPKRIVYVSC-NPATLARDL 405 (432)
T ss_pred hcc--ccCCCCEEEECC-------CCCCCCHHHHHHHHhcCCCcEEEEeC-CHHHHHHHH
Confidence 321 235789998753 33334423333444556777777765 666555543
No 218
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.47 E-value=3e-06 Score=64.98 Aligned_cols=116 Identities=18% Similarity=0.087 Sum_probs=82.5
Q ss_pred EEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCe
Q 027388 88 VLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF 166 (224)
Q Consensus 88 iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 166 (224)
|.||||--|.+...+++.+. .+++++|+++..++.|++++. ..++...+.+..+|-.+.-. +.+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~--------~~~l~~~i~~rlgdGL~~l~-----~~e~~ 67 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIA--------KYGLEDRIEVRLGDGLEVLK-----PGEDV 67 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH--------HTT-TTTEEEEE-SGGGG-------GGG--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH--------HcCCcccEEEEECCcccccC-----CCCCC
Confidence 68999999999999987654 469999999999999999988 45667789999999654221 22348
Q ss_pred eEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC-ChHHHHHHhhhcccc
Q 027388 167 DICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP-DANVIIKKLREEHFC 222 (224)
Q Consensus 167 D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~-~~~~~~~~~~~~gf~ 222 (224)
|.|+..++ +..-...++......++....|++... +...++..|.+.||.
T Consensus 68 d~ivIAGM------GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~ 118 (205)
T PF04816_consen 68 DTIVIAGM------GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFE 118 (205)
T ss_dssp -EEEEEEE-------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEE
T ss_pred CEEEEecC------CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCE
Confidence 99987775 335567788888777777667887644 457889999999984
No 219
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.46 E-value=3.4e-07 Score=67.25 Aligned_cols=76 Identities=25% Similarity=0.434 Sum_probs=53.4
Q ss_pred CeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCC
Q 027388 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 165 (224)
..|+|+.||.|+.+++++. .+..|++||+++..++.|+.++. .-+...++.++++|+.+...... ....
T Consensus 1 ~~vlD~fcG~GGNtIqFA~-~~~~Viaidid~~~~~~a~hNa~--------vYGv~~~I~~i~gD~~~~~~~~~--~~~~ 69 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFAR-TFDRVIAIDIDPERLECAKHNAE--------VYGVADNIDFICGDFFELLKRLK--SNKI 69 (163)
T ss_dssp SEEEETT-TTSHHHHHHHH-TT-EEEEEES-HHHHHHHHHHHH--------HTT-GGGEEEEES-HHHHGGGB-------
T ss_pred CEEEEeccCcCHHHHHHHH-hCCeEEEEECCHHHHHHHHHHHH--------HcCCCCcEEEEeCCHHHHHhhcc--cccc
Confidence 3699999999999999985 46689999999999999999987 34556679999999987542110 1112
Q ss_pred eeEEEEc
Q 027388 166 FDICSCQ 172 (224)
Q Consensus 166 ~D~i~~~ 172 (224)
+|+|+++
T Consensus 70 ~D~vFlS 76 (163)
T PF09445_consen 70 FDVVFLS 76 (163)
T ss_dssp -SEEEE-
T ss_pred ccEEEEC
Confidence 8999976
No 220
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.42 E-value=3.5e-06 Score=73.96 Aligned_cols=102 Identities=15% Similarity=0.071 Sum_probs=60.8
Q ss_pred eehhhhHHHHHHHHHHHh----hcCCCeEEEecCCCchhHHHHHhhc---------CCeEEEEeCChhHHHHHHHhccCC
Q 027388 64 IHLKKLNNWIKSVLVQLY----ARRGDVVLDLACGKGGDLIKWDKAK---------IGYYVGIDIAEGSIEDCRTRYNGD 130 (224)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~----~~~~~~iLDiGcG~G~~~~~l~~~~---------~~~~~gvD~s~~~~~~a~~~~~~~ 130 (224)
+++..+...+...+.... .....+|||.|||+|.++..++... ...++|+|+++..+..++.++...
T Consensus 7 yTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~ 86 (524)
T TIGR02987 7 FTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF 86 (524)
T ss_pred CCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc
Confidence 345555555444432211 1145689999999999998876532 146889999999999999887622
Q ss_pred cccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccc
Q 027388 131 ADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFA 174 (224)
Q Consensus 131 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~ 174 (224)
+ ...+.+.+.|.............+.||+|+++-.
T Consensus 87 ~---------~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPP 121 (524)
T TIGR02987 87 A---------LLEINVINFNSLSYVLLNIESYLDLFDIVITNPP 121 (524)
T ss_pred C---------CCCceeeecccccccccccccccCcccEEEeCCC
Confidence 1 1123444444332211000002368999998754
No 221
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.42 E-value=2.1e-06 Score=70.26 Aligned_cols=102 Identities=25% Similarity=0.197 Sum_probs=84.0
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
..|.+|||+-+|-|-+++.++..+..+|+++|+++..++.+++++.- +++...+..+++|...... .
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~L--------N~v~~~v~~i~gD~rev~~-----~ 253 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRL--------NKVEGRVEPILGDAREVAP-----E 253 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHh--------cCccceeeEEeccHHHhhh-----c
Confidence 56899999999999999999877766699999999999999999873 4555568999999988765 2
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.+.+|-|++...- ....++....+.+++||++.+-
T Consensus 254 ~~~aDrIim~~p~--------~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 254 LGVADRIIMGLPK--------SAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred cccCCEEEeCCCC--------cchhhHHHHHHHhhcCcEEEEE
Confidence 3889999987642 3346777788888889988765
No 222
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.40 E-value=7.2e-06 Score=62.82 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=82.3
Q ss_pred hcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
...++++||||.=||.-+..++.. ..++|+++|+++...+.+....+ ..+....|+++++++.+......
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k--------~agv~~KI~~i~g~a~esLd~l~ 142 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVK--------LAGVDHKITFIEGPALESLDELL 142 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHH--------hccccceeeeeecchhhhHHHHH
Confidence 357899999999888766665543 56799999999999999976665 45667789999998765422111
Q ss_pred -cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 160 -LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 160 -~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
-...+.||.++... .-.....+..++.+++|+||++++.
T Consensus 143 ~~~~~~tfDfaFvDa-------dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 143 ADGESGTFDFAFVDA-------DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred hcCCCCceeEEEEcc-------chHHHHHHHHHHHhhcccccEEEEe
Confidence 01468999998753 1245568899999999999999985
No 223
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.39 E-value=2.6e-05 Score=62.36 Aligned_cols=106 Identities=17% Similarity=0.194 Sum_probs=75.7
Q ss_pred HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (224)
Q Consensus 72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (224)
....++..+...++..|||||+|.|.++..++... .+++++|+++.+++..++.+.. ..+++++.+|+
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~-----------~~~~~vi~~D~ 85 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS-----------NPNVEVINGDF 85 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT-----------CSSEEEEES-T
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh-----------cccceeeecch
Confidence 35556666666789999999999999999998666 7999999999999999987652 45699999999
Q ss_pred cccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccC
Q 027388 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP 198 (224)
Q Consensus 152 ~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~ 198 (224)
..++..... ......|+++... ++ + ..++.++...-+.
T Consensus 86 l~~~~~~~~--~~~~~~vv~NlPy-~i--s----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 86 LKWDLYDLL--KNQPLLVVGNLPY-NI--S----SPILRKLLELYRF 123 (262)
T ss_dssp TTSCGGGHC--SSSEEEEEEEETG-TG--H----HHHHHHHHHHGGG
T ss_pred hccccHHhh--cCCceEEEEEecc-cc--h----HHHHHHHhhcccc
Confidence 987763211 2456677776544 33 2 3455555554344
No 224
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.38 E-value=1.7e-06 Score=65.60 Aligned_cols=128 Identities=22% Similarity=0.291 Sum_probs=85.9
Q ss_pred hhhHHHHHHHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEE
Q 027388 34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI 113 (224)
Q Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gv 113 (224)
..-..+|....+.|.......-..+...-+.++..+...+...+..- -....|+|..||.|+.+++.+ ..+..|++|
T Consensus 46 p~l~kywk~ryrlfsrfd~gi~md~e~wfsvTpe~ia~~iA~~v~~~--~~~~~iidaf~g~gGntiqfa-~~~~~VisI 122 (263)
T KOG2730|consen 46 PELFKYWKNRYRLFSRFDSGIYMDREGWFSVTPEKIAEHIANRVVAC--MNAEVIVDAFCGVGGNTIQFA-LQGPYVIAI 122 (263)
T ss_pred hHHHHHHHHHHHHHHhhccceeecccceEEeccHHHHHHHHHHHHHh--cCcchhhhhhhcCCchHHHHH-HhCCeEEEE
Confidence 44567888887777644433222222222334555555544443332 256789999999999999887 556699999
Q ss_pred eCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEcc
Q 027388 114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF 173 (224)
Q Consensus 114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~ 173 (224)
|+++.-+.-|+.+++ .-++..++.|+++|+.++-- .+.+....+|+|+.+.
T Consensus 123 diDPikIa~AkhNae--------iYGI~~rItFI~GD~ld~~~-~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 123 DIDPVKIACARHNAE--------VYGVPDRITFICGDFLDLAS-KLKADKIKYDCVFLSP 173 (263)
T ss_pred eccHHHHHHHhccce--------eecCCceeEEEechHHHHHH-HHhhhhheeeeeecCC
Confidence 999999999999887 56788899999999876532 1111334577887654
No 225
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.37 E-value=8.7e-06 Score=61.69 Aligned_cols=120 Identities=17% Similarity=0.058 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEE
Q 027388 68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI 147 (224)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~ 147 (224)
+...++......+. .++.+||++|-|-|...-.+.+....+-+.++..+..++..++..-. -..+|..+
T Consensus 86 WEtpiMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~----------ek~nViil 154 (271)
T KOG1709|consen 86 WETPIMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR----------EKENVIIL 154 (271)
T ss_pred hhhHHHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc----------cccceEEE
Confidence 34444444444443 67899999999999877777666777888999999999998887542 24568888
Q ss_pred eccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 148 ~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.+-+++.... + +++.||-|+-.-.-.+. ++...+...+.++|||+|++-+.
T Consensus 155 ~g~WeDvl~~-L--~d~~FDGI~yDTy~e~y----Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 155 EGRWEDVLNT-L--PDKHFDGIYYDTYSELY----EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred ecchHhhhcc-c--cccCcceeEeechhhHH----HHHHHHHHHHhhhcCCCceEEEe
Confidence 8877654321 1 46889999865544544 78899999999999999998753
No 226
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.33 E-value=1.1e-06 Score=72.93 Aligned_cols=107 Identities=21% Similarity=0.231 Sum_probs=87.4
Q ss_pred hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..++..++|+|||-|...........+.++|+|.++..+..+...... ..+.....++.+|+..-+.
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~--------~~l~~k~~~~~~~~~~~~f----- 174 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK--------AYLDNKCNFVVADFGKMPF----- 174 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH--------HHhhhhcceehhhhhcCCC-----
Confidence 346668999999999999888766778999999999888777766542 2334445567788777666
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
++..||.+.+..+..|. ++...++.+++++++|||+++..
T Consensus 175 edn~fd~v~~ld~~~~~----~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 175 EDNTFDGVRFLEVVCHA----PDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred CccccCcEEEEeecccC----CcHHHHHHHHhcccCCCceEEeH
Confidence 68999999999999998 78899999999999999999974
No 227
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.33 E-value=2.3e-06 Score=71.55 Aligned_cols=100 Identities=11% Similarity=0.082 Sum_probs=78.3
Q ss_pred CeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 86 DVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
.+|||+.||+|..++.++.. +...|+++|+++..++.+++++..+ ... ++.+++.|+..+... ..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N--------~~~-~~~v~~~Da~~~l~~----~~ 112 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN--------SVE-NIEVPNEDAANVLRY----RN 112 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh--------CCC-cEEEEchhHHHHHHH----hC
Confidence 58999999999999999875 4578999999999999999998732 222 478888998765421 13
Q ss_pred CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
..||+|...- +. .+..++..+.+.+++||+|+++.
T Consensus 113 ~~fDvIdlDP-fG-------s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 113 RKFHVIDIDP-FG-------TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCCCEEEeCC-CC-------CcHHHHHHHHHhcccCCEEEEEe
Confidence 5799998765 32 12468888999999999999983
No 228
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.31 E-value=1.5e-07 Score=70.72 Aligned_cols=94 Identities=14% Similarity=0.194 Sum_probs=71.3
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
.+.++||+|+|.|..+..++ ..+.+|++.++|..|....++.-- ++-. ..+..+. +
T Consensus 112 ~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk~y--------------nVl~-~~ew~~t--------~ 167 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKKNY--------------NVLT-EIEWLQT--------D 167 (288)
T ss_pred CCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhcCC--------------ceee-ehhhhhc--------C
Confidence 45799999999999998875 566689999999999988876522 2211 1122222 3
Q ss_pred CCeeEEEEccccccccCCHHHHHHHHHHHHhhccC-CeEEEEE
Q 027388 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRP-GGTFIGT 205 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~-gG~li~~ 205 (224)
-++|+|.|...+.-+ .++-.+++.++.+|+| +|.+|+.
T Consensus 168 ~k~dli~clNlLDRc----~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 168 VKLDLILCLNLLDRC----FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ceeehHHHHHHHHhh----cChHHHHHHHHHHhccCCCcEEEE
Confidence 479999999988766 5677899999999999 8887764
No 229
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.31 E-value=1.4e-05 Score=67.69 Aligned_cols=124 Identities=20% Similarity=0.253 Sum_probs=93.2
Q ss_pred hhhHHHHHHHHHHH-hhcCCC-eEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCe
Q 027388 67 KKLNNWIKSVLVQL-YARRGD-VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA 144 (224)
Q Consensus 67 ~~~~~~~~~~~~~~-~~~~~~-~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v 144 (224)
.++..|+....... ...+.. ++|-+|||.-.+...+.+.++..++.+|+|+..++....+.. ....-+
T Consensus 29 ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~----------~~~~~~ 98 (482)
T KOG2352|consen 29 EWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA----------KERPEM 98 (482)
T ss_pred HHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc----------cCCcce
Confidence 44444444332222 334445 999999999999999887889999999999999988876653 113347
Q ss_pred eEEeccccccccccccCCCCCeeEEEEccccccccCCHHHH------HHHHHHHHhhccCCeEEEEE
Q 027388 145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARA------RRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 145 ~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~------~~~l~~~~~~lk~gG~li~~ 205 (224)
.+...|+..+.+ ++++||+|+.-+.+..+++..... ...+.++.+++++||+++..
T Consensus 99 ~~~~~d~~~l~f-----edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 99 QMVEMDMDQLVF-----EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred EEEEecchhccC-----CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 888899888887 689999999999888886654433 45788999999999986654
No 230
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=8.8e-06 Score=61.80 Aligned_cols=116 Identities=27% Similarity=0.330 Sum_probs=78.0
Q ss_pred hcCCCeEEEecCCCchhHHHHHhhcC--CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
..++..|+|+|+..|+|+..+++... ..++++|+.+ ...+. ++.++++|++.-+....
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p-------------------~~~~~-~V~~iq~d~~~~~~~~~ 102 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP-------------------MKPIP-GVIFLQGDITDEDTLEK 102 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc-------------------cccCC-CceEEeeeccCccHHHH
Confidence 45789999999999999998876533 3599999977 12223 38999999886542111
Q ss_pred c---CCCCCeeEEEEcccc--------ccccCCHHHHHHHHHHHHhhccCCeEEEEEe---CChHHHHHHhhh
Q 027388 160 L---ADDAPFDICSCQFAM--------HYSWSTEARARRALANVSALLRPGGTFIGTM---PDANVIIKKLRE 218 (224)
Q Consensus 160 ~---~~~~~~D~i~~~~~l--------~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~---~~~~~~~~~~~~ 218 (224)
+ .....+|+|++..+- .|. -...-...++.-....|++||.+++.. .+.+.++..++.
T Consensus 103 l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~-r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~ 174 (205)
T COG0293 103 LLEALGGAPVDVVLSDMAPNTSGNRSVDHA-RSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR 174 (205)
T ss_pred HHHHcCCCCcceEEecCCCCcCCCccccHH-HHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH
Confidence 1 134557999977643 221 012234556777788999999999764 356666666653
No 231
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.29 E-value=1.5e-05 Score=57.70 Aligned_cols=100 Identities=24% Similarity=0.440 Sum_probs=68.8
Q ss_pred EEEecCCCchhHHHHHhhcC--CeEEEEeCChhHHHHHHHhccCCcccccccccCCCC-eeEEeccccc--cccccccCC
Q 027388 88 VLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP-ARLICGDCYE--VHLDKVLAD 162 (224)
Q Consensus 88 iLDiGcG~G~~~~~l~~~~~--~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-v~~~~~d~~~--~~~~~~~~~ 162 (224)
++|+|||+|... .+..... ..++++|++..++..++.... ..... +.+...+... .+. .
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-----~ 115 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAE----------GAGLGLVDFVVADALGGVLPF-----E 115 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhh----------hcCCCceEEEEeccccCCCCC-----C
Confidence 999999999865 2222222 378899999999998555542 10111 5677777665 444 2
Q ss_pred C-CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 163 D-APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 163 ~-~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
. ..||++.+....++. . ....+..+.+.++++|.+++....
T Consensus 116 ~~~~~d~~~~~~~~~~~----~-~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 116 DSASFDLVISLLVLHLL----P-PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred CCCceeEEeeeeehhcC----C-HHHHHHHHHHhcCCCcEEEEEecc
Confidence 3 489999444444443 1 788999999999999999987664
No 232
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.28 E-value=1.6e-05 Score=57.53 Aligned_cols=97 Identities=23% Similarity=0.192 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHH-HhhcCCCeEEEecCCCchhHHHHHh-----hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC
Q 027388 68 KLNNWIKSVLVQ-LYARRGDVVLDLACGKGGDLIKWDK-----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS 141 (224)
Q Consensus 68 ~~~~~~~~~~~~-~~~~~~~~iLDiGcG~G~~~~~l~~-----~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 141 (224)
.+..++..+... ....+...|+|+|||.|.++..++. ....++++||.++..++.+.++..... ..+.
T Consensus 8 ~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------~~~~ 81 (141)
T PF13679_consen 8 RMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG------SDLE 81 (141)
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc------chhh
Confidence 333444444333 2235678999999999999998886 456689999999999999988876221 1123
Q ss_pred CCeeEEeccccccccccccCCCCCeeEEEEccccc
Q 027388 142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH 176 (224)
Q Consensus 142 ~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~ 176 (224)
.++.+..++..... .....++++..++-.
T Consensus 82 ~~~~~~~~~~~~~~------~~~~~~~~vgLHaCG 110 (141)
T PF13679_consen 82 KRLSFIQGDIADES------SSDPPDILVGLHACG 110 (141)
T ss_pred ccchhhccchhhhc------ccCCCeEEEEeeccc
Confidence 44566666554432 246678888766544
No 233
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.27 E-value=1.2e-05 Score=66.96 Aligned_cols=59 Identities=29% Similarity=0.421 Sum_probs=44.6
Q ss_pred CeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (224)
..|||+-||.|.++..++ ....+|+|||.++.+++.|++++..++ + .+++|+++++.++
T Consensus 198 ~~vlDlycG~G~fsl~la-~~~~~V~gvE~~~~av~~A~~Na~~N~--------i-~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLA-KKAKKVIGVEIVEEAVEDARENAKLNG--------I-DNVEFIRGDAEDF 256 (352)
T ss_dssp TEEEEES-TTTCCHHHHH-CCSSEEEEEES-HHHHHHHHHHHHHTT-----------SEEEEE--SHHC
T ss_pred CcEEEEeecCCHHHHHHH-hhCCeEEEeeCCHHHHHHHHHHHHHcC--------C-CcceEEEeeccch
Confidence 389999999999999987 556699999999999999999987432 2 3489998876554
No 234
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.24 E-value=5.2e-06 Score=61.57 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=77.2
Q ss_pred CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (224)
.+.+.|+|+|+|.++...+ +...+|++++.++.....|.+++.- ....++.++.+|+.+..+ .
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa-~~A~rViAiE~dPk~a~~a~eN~~v---------~g~~n~evv~gDA~~y~f-------e 95 (252)
T COG4076 33 EDTFADLGAGSGILSVVAA-HAAERVIAIEKDPKRARLAEENLHV---------PGDVNWEVVVGDARDYDF-------E 95 (252)
T ss_pred hhceeeccCCcchHHHHHH-hhhceEEEEecCcHHHHHhhhcCCC---------CCCcceEEEecccccccc-------c
Confidence 4789999999998887655 4567999999999999999999752 234469999999988775 4
Q ss_pred CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (224)
Q Consensus 165 ~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li 203 (224)
..|+|+|-+.=..+ -.+.+..+++.+...||.++.++
T Consensus 96 ~ADvvicEmlDTaL--i~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 96 NADVVICEMLDTAL--IEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ccceeHHHHhhHHh--hcccccHHHHHHHHHhhcCCccc
Confidence 68999986531111 12456778888888999988877
No 235
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=3.4e-05 Score=64.33 Aligned_cols=129 Identities=18% Similarity=0.248 Sum_probs=87.4
Q ss_pred HhhcCCCeEEEecCCCchhHHHHHhhc---CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388 80 LYARRGDVVLDLACGKGGDLIKWDKAK---IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (224)
Q Consensus 80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~---~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 156 (224)
+.+.++.+|||++++.|+-+..+++.. ...|+++|.++..+...+.++... +.. ++...+.|....+.
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl--------G~~-nv~~~~~d~~~~~~ 222 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL--------GVR-NVIVVNKDARRLAE 222 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc--------CCC-ceEEEecccccccc
Confidence 456788999999999999888887653 345699999999999999998733 222 26778888665432
Q ss_pred ccccCCCCCeeEEEEcc------ccc------cccCC------HHHHHHHHHHHHhhccCCeEEEEEeC------ChHHH
Q 027388 157 DKVLADDAPFDICSCQF------AMH------YSWST------EARARRALANVSALLRPGGTFIGTMP------DANVI 212 (224)
Q Consensus 157 ~~~~~~~~~~D~i~~~~------~l~------~~~~~------~~~~~~~l~~~~~~lk~gG~li~~~~------~~~~~ 212 (224)
... ....||.|++.- ++. |-+.. ..-+..+|....++|||||.|+.+|. |...+
T Consensus 223 ~~~--~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV 300 (355)
T COG0144 223 LLP--GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVV 300 (355)
T ss_pred ccc--ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHH
Confidence 100 123599998432 221 00000 12357789999999999999999866 34444
Q ss_pred HHHhhhc
Q 027388 213 IKKLREE 219 (224)
Q Consensus 213 ~~~~~~~ 219 (224)
...+++.
T Consensus 301 ~~~L~~~ 307 (355)
T COG0144 301 ERFLERH 307 (355)
T ss_pred HHHHHhC
Confidence 4555443
No 236
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=1.4e-05 Score=61.67 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=82.0
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCee-EEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR-LICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~ 161 (224)
.+++.+||||+.||+++.-+++.+...|+++|..-..+.+--+. ++++. +...|+..+...+.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~--------------d~rV~~~E~tN~r~l~~~~~-- 141 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN--------------DPRVIVLERTNVRYLTPEDF-- 141 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc--------------CCcEEEEecCChhhCCHHHc--
Confidence 47899999999999999999988888999999998877765544 23343 45566665544322
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE-EeCChHHHHHHhhhccc
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG-TMPDANVIIKKLREEHF 221 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~-~~~~~~~~~~~~~~~gf 221 (224)
.+..|+++|.-++. ....+|-.+..+++++|-++. .-|..+.-.+.+.+.|.
T Consensus 142 -~~~~d~~v~DvSFI-------SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGv 194 (245)
T COG1189 142 -TEKPDLIVIDVSFI-------SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGV 194 (245)
T ss_pred -ccCCCeEEEEeehh-------hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCce
Confidence 24789999876653 457888999999999986554 44444544444444443
No 237
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.09 E-value=2.3e-05 Score=58.59 Aligned_cols=103 Identities=21% Similarity=0.187 Sum_probs=75.6
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
-.+++|||+|+|+|-.++..+..+...++..|+.+.......-+.+.+ ...+.+...|... .
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~an----------gv~i~~~~~d~~g--------~ 139 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAAN----------GVSILFTHADLIG--------S 139 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhc----------cceeEEeeccccC--------C
Confidence 468999999999998888877777788999999987777776666533 3447788887654 2
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccC-CeEEEEEeCC
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRP-GGTFIGTMPD 208 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~-gG~li~~~~~ 208 (224)
+..||+++...+++.- +....++. +++.|+. |-.+++..|.
T Consensus 140 ~~~~Dl~LagDlfy~~----~~a~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 140 PPAFDLLLAGDLFYNH----TEADRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred CcceeEEEeeceecCc----hHHHHHHH-HHHHHHhCCCEEEEeCCC
Confidence 5789999998887643 55666777 5555555 5556666664
No 238
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.07 E-value=7.2e-05 Score=59.76 Aligned_cols=109 Identities=16% Similarity=0.085 Sum_probs=66.1
Q ss_pred CCeEEEecCCCchhHHHHHhh---cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 85 GDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~~---~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
+.+|+=||||.=-++.-++.. ....++++|+++..++.+++.+... .++...+.|+++|..+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-------~~L~~~m~f~~~d~~~~~~----- 188 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-------LGLSKRMSFITADVLDVTY----- 188 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----------HH-SSEEEEES-GGGG-G-----
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-------ccccCCeEEEecchhcccc-----
Confidence 459999999975555544432 2457889999999999999876621 2456779999999877654
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
....||+|+......- ...+...++.++.+.++||+.+++-..+
T Consensus 189 dl~~~DvV~lAalVg~---~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 189 DLKEYDVVFLAALVGM---DAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp G----SEEEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred ccccCCEEEEhhhccc---ccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 3478999987665431 3456789999999999999999987443
No 239
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.99 E-value=8.7e-05 Score=60.00 Aligned_cols=116 Identities=22% Similarity=0.322 Sum_probs=81.7
Q ss_pred HhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (224)
Q Consensus 80 ~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (224)
+...++.+|||++++.|+-+..+++. +.+.++++|++...+...+.++... + ..++.....|.......
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~--------g-~~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL--------G-VFNVIVINADARKLDPK 151 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT--------T--SSEEEEESHHHHHHHH
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc--------C-CceEEEEeecccccccc
Confidence 35678889999999999998888764 4579999999999999999887732 2 22366776777655321
Q ss_pred cccCCCCCeeEEEEcc------cccccc------CC------HHHHHHHHHHHHhhc----cCCeEEEEEeC
Q 027388 158 KVLADDAPFDICSCQF------AMHYSW------ST------EARARRALANVSALL----RPGGTFIGTMP 207 (224)
Q Consensus 158 ~~~~~~~~~D~i~~~~------~l~~~~------~~------~~~~~~~l~~~~~~l----k~gG~li~~~~ 207 (224)
. ....||.|+..- ++..-. .. ..-+..+|+...+.+ +|||+++.+|.
T Consensus 152 ~---~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 152 K---PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp H---HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred c---cccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 1 134699999531 111110 00 012567899999999 99999999876
No 240
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.97 E-value=0.00053 Score=52.48 Aligned_cols=121 Identities=14% Similarity=0.082 Sum_probs=89.9
Q ss_pred cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..+..+.||||--+.+...+.+.+ ...++..|+++..++.|.+.+. ...+...+...++|....-.
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~--------~~~l~~~i~vr~~dgl~~l~----- 81 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVK--------KNNLSERIDVRLGDGLAVLE----- 81 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHH--------hcCCcceEEEeccCCccccC-----
Confidence 445569999999999999988764 4568899999999999999988 45666678888888643221
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe-CChHHHHHHhhhcccc
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM-PDANVIIKKLREEHFC 222 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~-~~~~~~~~~~~~~gf~ 222 (224)
.++.+|+|+..++ +-.-...++.+-.+.|+.=-.|++.. -+...+++.+.+.+|.
T Consensus 82 ~~d~~d~ivIAGM------GG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~ 137 (226)
T COG2384 82 LEDEIDVIVIAGM------GGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYE 137 (226)
T ss_pred ccCCcCEEEEeCC------cHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCce
Confidence 3568999987765 23456677777777776433566653 3457899999988874
No 241
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.96 E-value=0.00015 Score=55.66 Aligned_cols=102 Identities=21% Similarity=0.211 Sum_probs=68.6
Q ss_pred HhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhH----HHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388 80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGS----IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (224)
Q Consensus 80 ~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~----~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 153 (224)
..+.++.+||-+|+++|.....+..- ..+.|++|+.|+.. +..|++|- |+-.+.+|+..
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~---------------NIiPIl~DAr~ 133 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP---------------NIIPILEDARH 133 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST---------------TEEEEES-TTS
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC---------------ceeeeeccCCC
Confidence 45678999999999999888777653 36789999999954 55555553 48888888863
Q ss_pred c-ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 154 V-HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 154 ~-~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
= .... --+.+|+|++.-+- .+...-++.++...||+||.+++.
T Consensus 134 P~~Y~~---lv~~VDvI~~DVaQ------p~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 134 PEKYRM---LVEMVDVIFQDVAQ------PDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp GGGGTT---TS--EEEEEEE-SS------TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHhhc---ccccccEEEecCCC------hHHHHHHHHHHHhhccCCcEEEEE
Confidence 1 1111 23699999976542 244556777888999999998876
No 242
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.94 E-value=5e-05 Score=62.04 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=61.7
Q ss_pred hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..++.++|||||++|+++..+++.+. .|++||..+ +-... .. ..+|.+...|......
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~~L---~~------------~~~V~h~~~d~fr~~p----- 266 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQSL---MD------------TGQVEHLRADGFKFRP----- 266 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCHhh---hC------------CCCEEEEeccCcccCC-----
Confidence 35789999999999999999986655 999999554 22221 11 4458888888655432
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCC
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG 199 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~g 199 (224)
..+.+|+++|..+-. +..+..-+.++|..|
T Consensus 267 ~~~~vDwvVcDmve~--------P~rva~lm~~Wl~~g 296 (357)
T PRK11760 267 PRKNVDWLVCDMVEK--------PARVAELMAQWLVNG 296 (357)
T ss_pred CCCCCCEEEEecccC--------HHHHHHHHHHHHhcC
Confidence 257899999987632 345556666666655
No 243
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.88 E-value=1.6e-05 Score=54.47 Aligned_cols=100 Identities=22% Similarity=0.259 Sum_probs=45.0
Q ss_pred EEecCCCchhHHHHHhh---c-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388 89 LDLACGKGGDLIKWDKA---K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (224)
Q Consensus 89 LDiGcG~G~~~~~l~~~---~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (224)
||||+..|..+..+++. . ..+++++|..+. .+.+.+.+. ...+..+++++.++..+.-. .. ..+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~--------~~~~~~~~~~~~g~s~~~l~-~~--~~~ 68 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIK--------KAGLSDRVEFIQGDSPDFLP-SL--PDG 68 (106)
T ss_dssp --------------------------EEEESS---------------------GGG-BTEEEEES-THHHHH-HH--HH-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhh--------hcCCCCeEEEEEcCcHHHHH-Hc--CCC
Confidence 68999999877776643 1 237999999995 222222222 12345569999999865421 11 147
Q ss_pred CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 165 ~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
++|+|+.... | ..+.....+..+...|+|||++++-
T Consensus 69 ~~dli~iDg~-H----~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 69 PIDLIFIDGD-H----SYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp -EEEEEEES--------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CEEEEEECCC-C----CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 9999998763 2 2266778899999999999999874
No 244
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.85 E-value=0.00032 Score=56.65 Aligned_cols=137 Identities=18% Similarity=0.176 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHHHhhhccc-cchhhhccCCceehhhhHHHHHHHHHHHhhc--CCCeEEEecCCCchhHHHHH-hhcCCe
Q 027388 34 ESTKVFARKVADHYSRRTN-QTLEEREASPIIHLKKLNNWIKSVLVQLYAR--RGDVVLDLACGKGGDLIKWD-KAKIGY 109 (224)
Q Consensus 34 ~~~~~~~~~~~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iLDiGcG~G~~~~~l~-~~~~~~ 109 (224)
++....-..+-.++..... +....+-.+++..=-.+..|+..++...... ..-++||||||..-.-.-+. ....-+
T Consensus 49 ~Av~~Ln~aLLk~dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~ 128 (299)
T PF05971_consen 49 EAVRELNKALLKHDFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWS 128 (299)
T ss_dssp HHHHHHHHHHHHHHH--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--E
T ss_pred HHHHHHHHHHHHHhcCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCe
Confidence 3444433333333333443 3333333444432234556666665543211 24689999999874333232 234568
Q ss_pred EEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEcccccc
Q 027388 110 YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY 177 (224)
Q Consensus 110 ~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~ 177 (224)
++|+|+++..++.|++++..+ ..+...|+++...-...-+.......+.||+.+|+--++-
T Consensus 129 fvaTdID~~sl~~A~~nv~~N-------~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 129 FVATDIDPKSLESARENVERN-------PNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp EEEEES-HHHHHHHHHHHHHT--------T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred EEEecCCHHHHHHHHHHHHhc-------cccccceEEEEcCCccccchhhhcccceeeEEecCCcccc
Confidence 999999999999999998832 2566778876654222112222224579999999887653
No 245
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.75 E-value=0.00015 Score=58.83 Aligned_cols=90 Identities=18% Similarity=0.143 Sum_probs=66.6
Q ss_pred HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (224)
Q Consensus 73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (224)
+..++..+.+.++..++|.-+|.|+++..++.. ..++|+|+|.++.+++.+++++. ....++.++++++
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~----------~~~~R~~~i~~nF 78 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS----------DFEGRVVLIHDNF 78 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh----------hcCCcEEEEeCCH
Confidence 344555555677889999999999999998865 34799999999999999999876 2245689999988
Q ss_pred cccccccccCCCCCeeEEEEc
Q 027388 152 YEVHLDKVLADDAPFDICSCQ 172 (224)
Q Consensus 152 ~~~~~~~~~~~~~~~D~i~~~ 172 (224)
.++..........++|.|+..
T Consensus 79 ~~l~~~l~~~~~~~vDgIl~D 99 (305)
T TIGR00006 79 ANFFEHLDELLVTKIDGILVD 99 (305)
T ss_pred HHHHHHHHhcCCCcccEEEEe
Confidence 775421100023578888865
No 246
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.75 E-value=0.0005 Score=54.52 Aligned_cols=128 Identities=14% Similarity=0.099 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHhhc-CCCeEEEecCCCch--hHHHHHh--hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCC
Q 027388 69 LNNWIKSVLVQLYAR-RGDVVLDLACGKGG--DLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP 143 (224)
Q Consensus 69 ~~~~~~~~~~~~~~~-~~~~iLDiGcG~G~--~~~~l~~--~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 143 (224)
-+.|+.+.+..+... .=..+||||||--. +.-++++ ....+|+-||.++-.+..++..+... -...
T Consensus 52 nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~---------~~g~ 122 (267)
T PF04672_consen 52 NRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN---------PRGR 122 (267)
T ss_dssp HHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT----------TTSE
T ss_pred HHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC---------CCcc
Confidence 345566666655444 34679999999643 3334443 25679999999999999998887631 0112
Q ss_pred eeEEeccccccc--cc-----cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 144 ARLICGDCYEVH--LD-----KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 144 v~~~~~d~~~~~--~~-----~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
..++++|+.+-. +. ..+ ...+-=.++...++||+ ...+++..++..+...|.||.+|+++..
T Consensus 123 t~~v~aD~r~p~~iL~~p~~~~~l-D~~rPVavll~~vLh~v-~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 123 TAYVQADLRDPEAILAHPEVRGLL-DFDRPVAVLLVAVLHFV-PDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp EEEEE--TT-HHHHHCSHHHHCC---TTS--EEEECT-GGGS--CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred EEEEeCCCCCHHHHhcCHHHHhcC-CCCCCeeeeeeeeeccC-CCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 789999987632 11 111 12333356667888887 3446789999999999999999999844
No 247
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=4.1e-05 Score=55.50 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=75.0
Q ss_pred hcCCCeEEEecCCCchhHHHHHh--hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~--~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
...+++|||+|.|--.++.-+.. .....|...|-+...++..++....++.. . ...+.....+......
T Consensus 27 ~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s-----~-~tsc~vlrw~~~~aqs--- 97 (201)
T KOG3201|consen 27 KIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMAS-----S-LTSCCVLRWLIWGAQS--- 97 (201)
T ss_pred HHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccc-----c-cceehhhHHHHhhhHH---
Confidence 34578999999986555544433 24567999999999999988876532100 0 1111122222111111
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~ 209 (224)
......||+|+|..++.+- +...++++.++.+|+|.|.-++..|..
T Consensus 98 q~eq~tFDiIlaADClFfd----E~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 98 QQEQHTFDIILAADCLFFD----EHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred HHhhCcccEEEeccchhHH----HHHHHHHHHHHHHhCcccceeEecCcc
Confidence 0134689999999987642 677889999999999999888777754
No 248
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.73 E-value=0.00042 Score=56.82 Aligned_cols=133 Identities=15% Similarity=0.046 Sum_probs=87.7
Q ss_pred cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
+...++|=+|.|.|-.+.++.+-. ..+++.||+++.|++.+++...- ...|+ ..-.+.+++++..|+.+....
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vl-r~~N~-~sf~dpRv~Vv~dDAf~wlr~---- 361 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVL-RALNQ-GSFSDPRVTVVNDDAFQWLRT---- 361 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHh-hhhcc-CCccCCeeEEEeccHHHHHHh----
Confidence 456789999999998888887654 78999999999999999854320 01110 112345688888888765432
Q ss_pred CCCCeeEEEEccccccccC-CHHHHHHHHHHHHhhccCCeEEEEEeC------C-hHHHHHHhhhccc
Q 027388 162 DDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMP------D-ANVIIKKLREEHF 221 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~-~~~~~~~~l~~~~~~lk~gG~li~~~~------~-~~~~~~~~~~~gf 221 (224)
..+.||.||....=-.-++ ..-.-..+..-+++.|+++|.+++... . .-.+..-++++||
T Consensus 362 a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~ 429 (508)
T COG4262 362 AADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGY 429 (508)
T ss_pred hcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcc
Confidence 3469999997542000000 011125677888999999999998632 2 1245566677775
No 249
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.68 E-value=0.00012 Score=52.78 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=36.5
Q ss_pred eEEEecCCCchhHHHHHhhcC-CeEEEEeCChhHHHHHHHhcc
Q 027388 87 VVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYN 128 (224)
Q Consensus 87 ~iLDiGcG~G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~ 128 (224)
++||+|||.|.++..++.... .+++++|+++.+.+.+++++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHH
Confidence 489999999999988876544 379999999999999999876
No 250
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.67 E-value=0.00017 Score=56.43 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=56.9
Q ss_pred cCCCeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..+.+|+|||||.--++..+.... ...|+++|++..+++....-+. .+..+..+...|+...+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~----------~l~~~~~~~v~Dl~~~~------ 167 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLA----------VLGVPHDARVRDLLSDP------ 167 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHH----------HTT-CEEEEEE-TTTSH------
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHH----------hhCCCcceeEeeeeccC------
Confidence 457899999999988888776443 4589999999999999988866 23445677777876654
Q ss_pred CCCCeeEEEEccccccc
Q 027388 162 DDAPFDICSCQFAMHYS 178 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~ 178 (224)
+....|+.+..-+++.+
T Consensus 168 ~~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 168 PKEPADLALLLKTLPCL 184 (251)
T ss_dssp TTSEESEEEEET-HHHH
T ss_pred CCCCcchhhHHHHHHHH
Confidence 36789999988887765
No 251
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.61 E-value=0.00064 Score=48.65 Aligned_cols=86 Identities=22% Similarity=0.286 Sum_probs=59.0
Q ss_pred eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEcccccccc-------CC
Q 027388 109 YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW-------ST 181 (224)
Q Consensus 109 ~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~-------~~ 181 (224)
+|+++|+-+.+++..++++. ...+..++++++.+-.++..- . +.+.+|+++.+. .|++ +.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~--------~~~~~~~v~li~~sHe~l~~~--i-~~~~v~~~iFNL--GYLPggDk~i~T~ 67 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLE--------EAGLEDRVTLILDSHENLDEY--I-PEGPVDAAIFNL--GYLPGGDKSITTK 67 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHH--------HTT-GSGEEEEES-GGGGGGT-----S--EEEEEEEE--SB-CTS-TTSB--
T ss_pred CEEEEECHHHHHHHHHHHHH--------hcCCCCcEEEEECCHHHHHhh--C-ccCCcCEEEEEC--CcCCCCCCCCCcC
Confidence 58999999999999999998 344555799999887776531 1 225899998764 4442 23
Q ss_pred HHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 182 EARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 182 ~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
.+....+++.+.++|++||.+++...
T Consensus 68 ~~TTl~Al~~al~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 68 PETTLKALEAALELLKPGGIITIVVY 93 (140)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred cHHHHHHHHHHHHhhccCCEEEEEEe
Confidence 34567889999999999999887644
No 252
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.0001 Score=62.74 Aligned_cols=65 Identities=18% Similarity=0.339 Sum_probs=52.5
Q ss_pred HhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (224)
Q Consensus 80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (224)
.....++.+||+.||||.++..++ .....|+||++++..++.|+.++..++ + .|++|+++-+++.
T Consensus 379 ~~l~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ng--------i-sNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 379 AGLPADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQING--------I-SNATFIVGQAEDL 443 (534)
T ss_pred hCCCCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcC--------c-cceeeeecchhhc
Confidence 345677899999999999999886 566799999999999999999987433 2 2489999955543
No 253
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.58 E-value=0.0008 Score=54.09 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=69.2
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccc---------ccccccCC--C----------
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH---------HQRRKKFS--F---------- 142 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~---------~~~~~~~~--~---------- 142 (224)
...+||=-|||.|+++..++..++ .+-|-++|--|+-...-.++..... |.....+. +
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 356899999999999999986555 6677788888765544333211111 00000000 0
Q ss_pred ----------CeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 143 ----------PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 143 ----------~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
....-.+|+.+.--. ....+.||+|+.++.+. +......++..+.++|+|||+++=
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~--s~~~~~~d~VvTcfFID----Ta~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGT--SSGAGSYDVVVTCFFID----TAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred cccccCCCCCCccccccceeEEecC--cCCCCccceEEEEEEee----chHHHHHHHHHHHHhccCCcEEEe
Confidence 000011333322110 00245799999886553 558899999999999999999883
No 254
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.56 E-value=0.00086 Score=58.38 Aligned_cols=147 Identities=20% Similarity=0.263 Sum_probs=91.0
Q ss_pred CCceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhc-----CCeEEEEeCChhHHHHHHHhccCCccccc
Q 027388 61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-----IGYYVGIDIAEGSIEDCRTRYNGDADHHQ 135 (224)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-----~~~~~gvD~s~~~~~~a~~~~~~~~~~~~ 135 (224)
..++.++.+...+..++ .+.+..+|+|..||+|++........ ...++|.|+.+.....|+.++.-
T Consensus 166 GEfyTP~~v~~liv~~l---~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l------ 236 (489)
T COG0286 166 GEFYTPREVSELIVELL---DPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL------ 236 (489)
T ss_pred CccCChHHHHHHHHHHc---CCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH------
Confidence 45666677655544443 33456699999999999888765431 25688999999999999999762
Q ss_pred ccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccc---cc-----------------cCCHH-HHHHHHHHHHh
Q 027388 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH---YS-----------------WSTEA-RARRALANVSA 194 (224)
Q Consensus 136 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~---~~-----------------~~~~~-~~~~~l~~~~~ 194 (224)
+++...+...++|....+........+.||.|+++-.+. |. +.+.. .-.+++..+..
T Consensus 237 --hgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~ 314 (489)
T COG0286 237 --HGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILY 314 (489)
T ss_pred --hCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHH
Confidence 233323455555544433211011346799988764332 10 11111 22789999999
Q ss_pred hccCCeEEEEEeCC--------hHHHHHHhhh
Q 027388 195 LLRPGGTFIGTMPD--------ANVIIKKLRE 218 (224)
Q Consensus 195 ~lk~gG~li~~~~~--------~~~~~~~~~~ 218 (224)
.|+|||..-+..|+ ...|+..+.+
T Consensus 315 ~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 315 KLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred hcCCCceEEEEecCCcCcCCCchHHHHHHHHh
Confidence 99998865554442 4456665555
No 255
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00061 Score=55.62 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=62.3
Q ss_pred CCCeEEEecCCCchhHHHHHh--hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 84 RGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~--~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
.+.+|||+|.|.|.-+..+-. .....++.++.|+..-+........- -......+..-+..|-..++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv-----~t~~td~r~s~vt~dRl~lp------ 181 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV-----STEKTDWRASDVTEDRLSLP------ 181 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc-----ccccCCCCCCccchhccCCC------
Confidence 467899999999865554432 23456788888886555544332200 00001111111112211111
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
..+.|++++...-|-+. ..+......++.++.++.|||.|+|..+.
T Consensus 182 ~ad~ytl~i~~~eLl~d-~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 182 AADLYTLAIVLDELLPD-GNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred ccceeehhhhhhhhccc-cCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 24556666554432221 24445566999999999999999987553
No 256
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=5.3e-05 Score=54.52 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=43.8
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHH
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~ 212 (224)
.++++|+|.+.++++|+ ..++-..+++.+++.|||||+|-+.+|+...+
T Consensus 44 ~dns~d~iyaeHvlEHl--t~~Eg~~alkechr~Lrp~G~LriAvPdl~f~ 92 (185)
T COG4627 44 EDNSVDAIYAEHVLEHL--TYDEGTSALKECHRFLRPGGKLRIAVPDLKFL 92 (185)
T ss_pred CCcchHHHHHHHHHHHH--hHHHHHHHHHHHHHHhCcCcEEEEEcCCcchh
Confidence 57899999999999999 77889999999999999999999998875433
No 257
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.46 E-value=0.0027 Score=51.19 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=75.9
Q ss_pred eEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCe
Q 027388 87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF 166 (224)
Q Consensus 87 ~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 166 (224)
+++|+.||.|.+...+...+...++++|+++..++..+.++. -.++++|+.++..... ...+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~---------------~~~~~~Di~~~~~~~~---~~~~ 63 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP---------------NKLIEGDITKIDEKDF---IPDI 63 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC---------------CCCccCccccCchhhc---CCCC
Confidence 689999999999888876677678899999999999998875 1256778777654211 3579
Q ss_pred eEEEEccccccc---------cCCHHHHHHHHHHHHhhccCCeEEEEEeCC---------hHHHHHHhhhcccc
Q 027388 167 DICSCQFAMHYS---------WSTEARARRALANVSALLRPGGTFIGTMPD---------ANVIIKKLREEHFC 222 (224)
Q Consensus 167 D~i~~~~~l~~~---------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~---------~~~~~~~~~~~gf~ 222 (224)
|+++....-..+ .+....+...+.++.+.++|.=+++=.++. ...+...|++.||.
T Consensus 64 D~l~~gpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~ 137 (275)
T cd00315 64 DLLTGGFPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYN 137 (275)
T ss_pred CEEEeCCCChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcE
Confidence 999976522211 011222222333455556776444433332 34577778888864
No 258
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.46 E-value=0.015 Score=45.47 Aligned_cols=120 Identities=13% Similarity=0.024 Sum_probs=69.0
Q ss_pred cCCCeEEEecCCCchhHHHHHh-hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc-ccccccc
Q 027388 83 RRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDKVL 160 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~-~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~ 160 (224)
-.+++||=+|=..- .++.++. ....+++.+|+++..++..++... ..+.+++.++.|+.+ +|..
T Consensus 43 L~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~----------~~gl~i~~~~~DlR~~LP~~--- 108 (243)
T PF01861_consen 43 LEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAE----------EEGLPIEAVHYDLRDPLPEE--- 108 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHH----------HHT--EEEE---TTS---TT---
T ss_pred ccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHH----------HcCCceEEEEecccccCCHH---
Confidence 46899999985443 2222222 356789999999999999988876 223348899999874 3321
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCe-EEEEEeCCh-------HHHHHHhhhcccc
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIGTMPDA-------NVIIKKLREEHFC 222 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG-~li~~~~~~-------~~~~~~~~~~gf~ 222 (224)
-.+.||++++.-.- +.+....|+.+....||..| ..++...+. ..+.+.+.+.||+
T Consensus 109 -~~~~fD~f~TDPPy-----T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~ 172 (243)
T PF01861_consen 109 -LRGKFDVFFTDPPY-----TPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLV 172 (243)
T ss_dssp -TSS-BSEEEE---S-----SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--E
T ss_pred -HhcCCCEEEeCCCC-----CHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcC
Confidence 25899999987653 44788999999999998755 555554332 2566677777764
No 259
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.39 E-value=0.0041 Score=52.16 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=69.1
Q ss_pred CCCeEEEecCCCchhHHHHHhh----------------cCCeEEEEeCChhHHHHHHHhccCCccccccccc----CCCC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKA----------------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK----FSFP 143 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~----------------~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 143 (224)
+..+|+|+|||+|.+++.+... ..-.++.-|+..+-....-+.+............ ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 3568999999999877654321 0135778887766655555555421000000000 0001
Q ss_pred eeEE---eccccccccccccCCCCCeeEEEEccccccccCCH----------------------------------HHHH
Q 027388 144 ARLI---CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE----------------------------------ARAR 186 (224)
Q Consensus 144 v~~~---~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~----------------------------------~~~~ 186 (224)
..|+ .+.+-.-.+ +.++.+++++.+++||+-.-+ .|..
T Consensus 143 ~~f~~gvpGSFY~RLf-----P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~ 217 (386)
T PLN02668 143 SYFAAGVPGSFYRRLF-----PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLA 217 (386)
T ss_pred ceEEEecCcccccccc-----CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHH
Confidence 1122 233322222 689999999999999983100 1355
Q ss_pred HHHHHHHhhccCCeEEEEEe
Q 027388 187 RALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 187 ~~l~~~~~~lk~gG~li~~~ 206 (224)
.+|+.-.+-|.|||.+++..
T Consensus 218 ~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 218 GFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred HHHHHHHHHhccCcEEEEEE
Confidence 67778888999999999875
No 260
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.37 E-value=0.0026 Score=52.65 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=65.9
Q ss_pred hcCCCeEEEecCCCchhHHHHHhh----------cC-------CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCe
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKA----------KI-------GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA 144 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~----------~~-------~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v 144 (224)
....-+|+|+||..|..++.+... .. -.++.-|+-.+-....-+.+....... ......-+
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~--~~~~~~f~ 91 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSL--KKFRNYFV 91 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHH--HHTTSEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhcc--CCCceEEE
Confidence 345578999999999988865431 11 268888976665555444443110000 00001112
Q ss_pred eEEeccccccccccccCCCCCeeEEEEccccccccC------C-----------------------------HHHHHHHH
Q 027388 145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS------T-----------------------------EARARRAL 189 (224)
Q Consensus 145 ~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~------~-----------------------------~~~~~~~l 189 (224)
.-+.+.+-.-.+ +.++.|++++..++||+.. . ..|...+|
T Consensus 92 ~gvpgSFy~rLf-----P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL 166 (334)
T PF03492_consen 92 SGVPGSFYGRLF-----PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFL 166 (334)
T ss_dssp EEEES-TTS--S------TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred EecCchhhhccC-----CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 234455543333 6899999999999999821 0 12456678
Q ss_pred HHHHhhccCCeEEEEEeC
Q 027388 190 ANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 190 ~~~~~~lk~gG~li~~~~ 207 (224)
+.-.+-|+|||.+++..+
T Consensus 167 ~~Ra~ELv~GG~mvl~~~ 184 (334)
T PF03492_consen 167 KARAEELVPGGRMVLTFL 184 (334)
T ss_dssp HHHHHHEEEEEEEEEEEE
T ss_pred HHhhheeccCcEEEEEEe
Confidence 888889999999998743
No 261
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.36 E-value=0.0015 Score=49.84 Aligned_cols=109 Identities=22% Similarity=0.311 Sum_probs=55.0
Q ss_pred hcCCCeEEEecCCCchhHHHHHh---h--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDK---A--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~---~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 156 (224)
..+++.|+|+|.-.|+-+..++. . ..++|+|||+.-......... ..++..+++++++|..+...
T Consensus 30 ~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e----------~hp~~~rI~~i~Gds~d~~~ 99 (206)
T PF04989_consen 30 ELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIE----------SHPMSPRITFIQGDSIDPEI 99 (206)
T ss_dssp HH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGG----------G----TTEEEEES-SSSTHH
T ss_pred HhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHh----------hccccCceEEEECCCCCHHH
Confidence 34789999999999987776653 1 457999999965333222111 12445679999999765432
Q ss_pred ccc---cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 157 DKV---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 157 ~~~---~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
-.. ........+|+-. +-| +.....+.|+....++++|+++|+.
T Consensus 100 ~~~v~~~~~~~~~vlVilD-s~H----~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 100 VDQVRELASPPHPVLVILD-SSH----THEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp HHTSGSS----SSEEEEES-S--------SSHHHHHHHHHHT--TT-EEEET
T ss_pred HHHHHHhhccCCceEEEEC-CCc----cHHHHHHHHHHhCccCCCCCEEEEE
Confidence 111 1112334455532 222 1245677888899999999999985
No 262
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.36 E-value=0.0015 Score=51.37 Aligned_cols=114 Identities=14% Similarity=-0.046 Sum_probs=71.9
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
...+|||+|+|+|-.++.++......|+..|+..........+...+ ......+..+.....++.+...... ..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~----~~l~~~g~~v~v~~L~Wg~~~~~~~--~~ 159 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNN----IALNQLGGSVIVAILVWGNALDVSF--RL 159 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhh----hhhhhcCCceeEEEEecCCcccHhh--cc
Confidence 45679999999997776666557778888887665433322211100 0012233345666666554432222 12
Q ss_pred CC-eeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 164 AP-FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 164 ~~-~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
.. +|+|++..++..- .....++..+..+|..+|++++.++
T Consensus 160 ~~~~DlilasDvvy~~----~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 160 PNPFDLILASDVVYEE----ESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred CCcccEEEEeeeeecC----CcchhHHHHHHHHHhcCCeEEEEEe
Confidence 33 9999999988753 5567788888888999887777765
No 263
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.29 E-value=0.0013 Score=49.07 Aligned_cols=106 Identities=23% Similarity=0.261 Sum_probs=64.2
Q ss_pred hcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec-ccccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHLDK 158 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~ 158 (224)
+.++.+|||+||..|.|+....+. ..+.+.|||+-. +. + ...+.++++ |+.+-....
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~----------p-~~Ga~~i~~~dvtdp~~~~ 126 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IE----------P-PEGATIIQGNDVTDPETYR 126 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------cc----------C-CCCcccccccccCCHHHHH
Confidence 468899999999999999876654 456899999843 11 1 122455555 554421100
Q ss_pred cc---CCCCCeeEEEEccccc--------cccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 159 VL---ADDAPFDICSCQFAMH--------YSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 159 ~~---~~~~~~D~i~~~~~l~--------~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
.+ .+..++|+|++.++-. |. ...+-...++.-....++|+|.+++.+-.
T Consensus 127 ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~-~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 127 KIFEALPNRPVDVVLSDMAPNATGVRIRDHY-RSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred HHHHhCCCCcccEEEeccCCCCcCcchhhHH-HHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 00 1568999999876421 10 01112233445556677899999987553
No 264
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.29 E-value=0.0021 Score=53.67 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=79.3
Q ss_pred HhhcCCCeEEEecCCCchhHHHHHh--hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388 80 LYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (224)
Q Consensus 80 ~~~~~~~~iLDiGcG~G~~~~~l~~--~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (224)
+.++++.+|||+++..|+-+..++. .+.+.+++.|.+...+...+.++...+. .+......|..+++..
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv---------~ntiv~n~D~~ef~~~ 307 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV---------TNTIVSNYDGREFPEK 307 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC---------CceEEEccCccccccc
Confidence 3567899999999999987776654 4677899999999999999988773321 2245566666655421
Q ss_pred cccCCCCCeeEEEE----cc--ccc------cc------cCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 158 KVLADDAPFDICSC----QF--AMH------YS------WSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 158 ~~~~~~~~~D~i~~----~~--~l~------~~------~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
. ++ ++||-|+. ++ ++. .. ..-..-+.++|.....++++||+|+.+|.
T Consensus 308 ~--~~-~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 308 E--FP-GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred c--cC-cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 1 12 38999983 33 111 00 00012356788889999999999998865
No 265
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.0026 Score=45.59 Aligned_cols=113 Identities=15% Similarity=0.141 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc
Q 027388 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150 (224)
Q Consensus 71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d 150 (224)
+.++.++..+...+..+.+|+|.|.|+.....++.+...-+|+++++-.+..++-+.- +.++.....|...|
T Consensus 59 eQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~--------R~g~~k~trf~Rkd 130 (199)
T KOG4058|consen 59 EQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAW--------RAGCAKSTRFRRKD 130 (199)
T ss_pred HHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHH--------HHhcccchhhhhhh
Confidence 3344444445556668999999999999998877676678899999988887776644 45667778888888
Q ss_pred ccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 151 ~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
+-.+++ ..|..++...+- .-+..+-..+..-|..+..++-.
T Consensus 131 lwK~dl-------~dy~~vviFgae-------s~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 131 LWKVDL-------RDYRNVVIFGAE-------SVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred hhhccc-------cccceEEEeehH-------HHHhhhHHHHHhhCcCCCeEEEE
Confidence 877665 233333333321 22334445566677778776654
No 266
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.27 E-value=0.0023 Score=48.41 Aligned_cols=120 Identities=13% Similarity=0.139 Sum_probs=68.0
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCe-EEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~-~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
..-.+.|||||-|.++..++...... ++|.++--..-+..+.++....... ..+.-.|+.+...+...+... .+.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~--a~~~~~ni~vlr~namk~lpn--~f~ 135 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTS--AEGQYPNISVLRTNAMKFLPN--FFE 135 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccc--cccccccceeeeccchhhccc--hhh
Confidence 44579999999999999998665554 5699999888888887765322111 011123355555554433210 012
Q ss_pred CCCeeEEEEccccccccC----CHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 163 DAPFDICSCQFAMHYSWS----TEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~----~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
.++.+-++..+---|+.. ..-.....+.+..-+|++||.++..+.
T Consensus 136 kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 136 KGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred hcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 233333332221111100 000124567788889999999987764
No 267
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.27 E-value=0.0019 Score=52.51 Aligned_cols=90 Identities=22% Similarity=0.241 Sum_probs=62.1
Q ss_pred HHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388 73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (224)
Q Consensus 73 ~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (224)
+..++..+...++..++|.--|.|+++..+++. ..++++|+|-++.+++.+++++. ....++.+++.++
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~----------~~~~r~~~~~~~F 78 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK----------KFDDRFIFIHGNF 78 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC----------CCCTTEEEEES-G
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh----------hccceEEEEeccH
Confidence 344566666778889999999999999999865 44899999999999999999887 2366789999998
Q ss_pred cccccccccC-CCCCeeEEEEc
Q 027388 152 YEVHLDKVLA-DDAPFDICSCQ 172 (224)
Q Consensus 152 ~~~~~~~~~~-~~~~~D~i~~~ 172 (224)
.++....... ....+|.|+..
T Consensus 79 ~~l~~~l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 79 SNLDEYLKELNGINKVDGILFD 100 (310)
T ss_dssp GGHHHHHHHTTTTS-EEEEEEE
T ss_pred HHHHHHHHHccCCCccCEEEEc
Confidence 8765321111 34688988854
No 268
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0095 Score=45.13 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=72.5
Q ss_pred HhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc-ccc
Q 027388 80 LYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLD 157 (224)
Q Consensus 80 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~ 157 (224)
..+.++.+||=+|+.+|.....+..- +.+.+++|+.|+.+.+..-..+.. -.|+.-+..|+..= ...
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----------R~Ni~PIL~DA~~P~~Y~ 140 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----------RPNIIPILEDARKPEKYR 140 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-----------CCCceeeecccCCcHHhh
Confidence 35678999999999999888877653 457899999999877665544432 23577788887531 111
Q ss_pred cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
. --+.+|+|+..-+- .+...-+..+....|++||.+++.
T Consensus 141 ~---~Ve~VDviy~DVAQ------p~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 141 H---LVEKVDVIYQDVAQ------PNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred h---hcccccEEEEecCC------chHHHHHHHHHHHhcccCCeEEEE
Confidence 1 13679999865432 233344567788899999976664
No 269
>PRK10742 putative methyltransferase; Provisional
Probab=97.15 E-value=0.0018 Score=50.87 Aligned_cols=94 Identities=9% Similarity=-0.067 Sum_probs=63.9
Q ss_pred HHHHhhcCCC--eEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccccccccc-CCCCeeEEeccccc
Q 027388 77 LVQLYARRGD--VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSFPARLICGDCYE 153 (224)
Q Consensus 77 ~~~~~~~~~~--~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~ 153 (224)
+....++++. +|||+-+|.|+.++.++..+. +|+++|-++......+..+..... +.+... +..+++++++|..+
T Consensus 79 ~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~-~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 79 AKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYA-DAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred HHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhh-ccccchhhhceEEEEeCcHHH
Confidence 3344455666 899999999999999886654 699999999998888877662100 000011 22468899999876
Q ss_pred cccccccCCCCCeeEEEEccccc
Q 027388 154 VHLDKVLADDAPFDICSCQFAMH 176 (224)
Q Consensus 154 ~~~~~~~~~~~~~D~i~~~~~l~ 176 (224)
.... ....||+|+..-.+.
T Consensus 157 ~L~~----~~~~fDVVYlDPMfp 175 (250)
T PRK10742 157 ALTD----ITPRPQVVYLDPMFP 175 (250)
T ss_pred HHhh----CCCCCcEEEECCCCC
Confidence 5431 234799999765443
No 270
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.011 Score=48.81 Aligned_cols=120 Identities=22% Similarity=0.207 Sum_probs=74.6
Q ss_pred HhhcCCCeEEEecCCCchhHHHHHhh-c----CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388 80 LYARRGDVVLDLACGKGGDLIKWDKA-K----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (224)
Q Consensus 80 ~~~~~~~~iLDiGcG~G~~~~~l~~~-~----~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (224)
+.+.++.+|||+++..|.-+.++++. . .+.+++-|.+...+....+..... ...++.+...++...
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l---------~~~~~~v~~~~~~~~ 221 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL---------PSPNLLVTNHDASLF 221 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc---------CCcceeeecccceec
Confidence 45678999999999999999888764 2 237899999998887777665421 122233333333332
Q ss_pred cccc---c-cCCCCCeeEEEEcc------ccccc---cC----C------HHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 155 HLDK---V-LADDAPFDICSCQF------AMHYS---WS----T------EARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 155 ~~~~---~-~~~~~~~D~i~~~~------~l~~~---~~----~------~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
+... + ......||-|+|.- .+... |. . ..-+..++.+-.++||+||.++.+|..
T Consensus 222 p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 222 PNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred cccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 2110 0 01235788887531 11100 00 0 012467889999999999999998763
No 271
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.015 Score=45.43 Aligned_cols=113 Identities=18% Similarity=0.210 Sum_probs=76.8
Q ss_pred hcCCCeEEEecCCCchhHHHHHhh-----cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~-----~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 156 (224)
...+.+++|+|+|+..-+..++.. ...+++.+|+|...++...+.+. ..-....+.-+++|.+.- +
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~--------~~y~~l~v~~l~~~~~~~-L 146 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAIL--------REYPGLEVNALCGDYELA-L 146 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHH--------HhCCCCeEeehhhhHHHH-H
Confidence 346889999999999877766543 23579999999999876544443 112233466677776532 2
Q ss_pred ccccCCCCCeeEEE-EccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 157 DKVLADDAPFDICS-CQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 157 ~~~~~~~~~~D~i~-~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
... +..+--+++ ....+..+ ++.+...++..+...++||-.+++.+.
T Consensus 147 a~~--~~~~~Rl~~flGStlGN~--tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 147 AEL--PRGGRRLFVFLGSTLGNL--TPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred hcc--cCCCeEEEEEecccccCC--ChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 111 233334443 34467777 778899999999999999999888643
No 272
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.09 E-value=0.0039 Score=50.09 Aligned_cols=90 Identities=18% Similarity=0.185 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhc--CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec
Q 027388 72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149 (224)
Q Consensus 72 ~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~ 149 (224)
.+...+..+.+.++...+|.--|.|+++..++... .++++++|-++.+++.|++++. ....++.+++.
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~----------~~~~r~~~v~~ 80 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLK----------EFDGRVTLVHG 80 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhh----------ccCCcEEEEeC
Confidence 35556777777888999999999999999998764 3679999999999999999987 33567889998
Q ss_pred cccccccccccCCCCCeeEEEE
Q 027388 150 DCYEVHLDKVLADDAPFDICSC 171 (224)
Q Consensus 150 d~~~~~~~~~~~~~~~~D~i~~ 171 (224)
++.++...........+|-|+.
T Consensus 81 ~F~~l~~~l~~~~i~~vDGiL~ 102 (314)
T COG0275 81 NFANLAEALKELGIGKVDGILL 102 (314)
T ss_pred cHHHHHHHHHhcCCCceeEEEE
Confidence 8776543211112457777764
No 273
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.05 E-value=0.0013 Score=56.20 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=62.3
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEe--CChhHHHHHHHhccCCcccccccccCCCCeeEEecccc-cccccccc
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGID--IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY-EVHLDKVL 160 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD--~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~ 160 (224)
.-+.|+|+.+|.|+++..|.... ..|--|= ..++.+...-.+-- +- ..-|+. .++.
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~-VWVMNVVP~~~~ntL~vIydRGL---------------IG-~yhDWCE~fsT---- 423 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDP-VWVMNVVPVSGPNTLPVIYDRGL---------------IG-VYHDWCEAFST---- 423 (506)
T ss_pred ceeeeeeecccccHHHHHhccCC-ceEEEecccCCCCcchhhhhccc---------------ch-hccchhhccCC----
Confidence 34679999999999999986433 2222221 22223333332211 11 122322 2322
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
=+..||+|.+.+++... ...-++..++-++-|+|+|||.++|.
T Consensus 424 -YPRTYDLlHA~~lfs~~-~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 424 -YPRTYDLLHADGLFSLY-KDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred -CCcchhheehhhhhhhh-cccccHHHHHHHhHhhcCCCceEEEe
Confidence 25799999999887664 23346788999999999999999985
No 274
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.72 E-value=0.0011 Score=45.06 Aligned_cols=43 Identities=23% Similarity=0.429 Sum_probs=32.2
Q ss_pred CeeEEEEcccccccc--CCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 165 PFDICSCQFAMHYSW--STEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 165 ~~D~i~~~~~l~~~~--~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
+||+|+|..+.-|+- -..+.+..+++++.+.|+|||.|++...
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 489999988755441 1455788999999999999999999743
No 275
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.72 E-value=0.013 Score=48.28 Aligned_cols=95 Identities=19% Similarity=0.156 Sum_probs=65.4
Q ss_pred hhcCCCeEEEecCC-CchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 81 YARRGDVVLDLACG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 81 ~~~~~~~iLDiGcG-~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
...++.+|+=+|+| -|+++.++++....+|+++|.|++-.+.|++... ..++... .......
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA---------------d~~i~~~-~~~~~~~- 225 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA---------------DHVINSS-DSDALEA- 225 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC---------------cEEEEcC-CchhhHH-
Confidence 35678888888886 4678888887666899999999999999998755 2333332 1111110
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
..+.||+|+..-. ...+....+.|++||.+++.
T Consensus 226 --~~~~~d~ii~tv~-----------~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 226 --VKEIADAIIDTVG-----------PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred --hHhhCcEEEECCC-----------hhhHHHHHHHHhcCCEEEEE
Confidence 1233999986543 23566778888999988864
No 276
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.64 E-value=0.025 Score=42.71 Aligned_cols=112 Identities=21% Similarity=0.157 Sum_probs=62.6
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHH----HHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSI----EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~----~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (224)
.++++.+|+|+=.|.|.++.-+... ..+.|+++-+.+... +..+.+... ....-.|++.+-.+...+
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~-------~e~~~aN~e~~~~~~~A~ 117 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAA-------REPVYANVEVIGKPLVAL 117 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhh-------hhhhhhhhhhhCCccccc
Confidence 3478999999999999998877643 334677665544311 101111000 011122344444444433
Q ss_pred ccccccCCCCCeeEEEEccccccc---cCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 155 HLDKVLADDAPFDICSCQFAMHYS---WSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 155 ~~~~~~~~~~~~D~i~~~~~l~~~---~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
. .....|+++.+...|-+ .-......++...+++.|||||++++.
T Consensus 118 ~------~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 118 G------APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred C------CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 3 23455655543321111 112345788999999999999998875
No 277
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.63 E-value=0.0013 Score=52.23 Aligned_cols=113 Identities=14% Similarity=0.040 Sum_probs=64.6
Q ss_pred hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHH-HhccCCcccccccccCCCCeeEEec---cccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCR-TRYNGDADHHQRRKKFSFPARLICG---DCYEVHLD 157 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~-~~~~~~~~~~~~~~~~~~~v~~~~~---d~~~~~~~ 157 (224)
...+++|||+|||.|...+.....+...++..|.+...++.-. .+..-+-...........-....+. |....
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~--- 190 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFN--- 190 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhh---
Confidence 4568999999999999888877666678899999988773211 1111000000000000000111111 21100
Q ss_pred cccCCCC--CeeEEEEccccccccCCHHHHHHH-HHHHHhhccCCeEEEEE
Q 027388 158 KVLADDA--PFDICSCQFAMHYSWSTEARARRA-LANVSALLRPGGTFIGT 205 (224)
Q Consensus 158 ~~~~~~~--~~D~i~~~~~l~~~~~~~~~~~~~-l~~~~~~lk~gG~li~~ 205 (224)
..+ .||+|.++..+... +....+ ......+++++|++++.
T Consensus 191 ----~t~~~~ydlIlsSetiy~~----~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 191 ----HTERTHYDLILSSETIYSI----DSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ----hccccchhhhhhhhhhhCc----chhhhhHhhhhhhcCCccchhhhh
Confidence 123 89999998887654 344444 66677778889987754
No 278
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.55 E-value=0.013 Score=45.28 Aligned_cols=129 Identities=14% Similarity=0.156 Sum_probs=73.2
Q ss_pred HHHHHhhhccccchhhhccCCceehhhhHHHHHHHHHHHh---hcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCCh
Q 027388 42 KVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLY---ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAE 117 (224)
Q Consensus 42 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~ 117 (224)
-++..|.-..-+.+..+-.+|+..=..+.+++..++.... ..++.++||||.|.--.---+-.+ ..-+++|.|+++
T Consensus 33 lL~~fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~ 112 (292)
T COG3129 33 LLAHFYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDS 112 (292)
T ss_pred HHHHhcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCH
Confidence 3445565333444444445555444445555555554331 135568999988764221111111 334789999999
Q ss_pred hHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEcccccc
Q 027388 118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY 177 (224)
Q Consensus 118 ~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~ 177 (224)
..++.|+..+..+ ..+...++.....-..--+...+...+.||+.+|+-.+|-
T Consensus 113 ~sl~sA~~ii~~N-------~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 113 QSLSSAKAIISAN-------PGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred HHHHHHHHHHHcC-------cchhhheeEEeccCccccccccccccceeeeEecCCCcch
Confidence 9999999998743 1333345544432222222333324789999999988873
No 279
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.49 E-value=0.019 Score=48.31 Aligned_cols=105 Identities=16% Similarity=0.141 Sum_probs=74.2
Q ss_pred CCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCC-CeeEEecccccccccccc
Q 027388 84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF-PARLICGDCYEVHLDKVL 160 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~ 160 (224)
.+.++||.=+|+|.=++.++.. +..+++.-|+|+..++..++++.. +++.. .+++.+.|+..+-..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~--------N~~~~~~~~v~~~DAn~ll~~--- 117 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLEL--------NGLEDERIEVSNMDANVLLYS--- 117 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHH--------CT-SGCCEEEEES-HHHHHCH---
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhh--------ccccCceEEEehhhHHHHhhh---
Confidence 4568999999999988888765 456899999999999999999763 34444 578888888765421
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
....||+|=..- + =.+..++....+.++.||.|.++.-+
T Consensus 118 -~~~~fD~IDlDP-f-------GSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 118 -RQERFDVIDLDP-F-------GSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp -STT-EEEEEE---S-------S--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred -ccccCCEEEeCC-C-------CCccHhHHHHHHHhhcCCEEEEeccc
Confidence 368999996432 1 23567899999999999999998544
No 280
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.46 E-value=0.0048 Score=47.13 Aligned_cols=142 Identities=15% Similarity=0.157 Sum_probs=75.1
Q ss_pred ehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh---cCCeEEEEeCChhHHHHHHHhccCCccc--cc----
Q 027388 65 HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADH--HQ---- 135 (224)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~---~~~~~~gvD~s~~~~~~a~~~~~~~~~~--~~---- 135 (224)
..+...+.+++.+..+....+-++.|-+||.|.++-.+.-. ....+++.|+++.+++.|++++.-.... +.
T Consensus 32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~e 111 (246)
T PF11599_consen 32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREE 111 (246)
T ss_dssp -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHH
Confidence 34444455555444443446678999999999776655432 4567999999999999999998643221 00
Q ss_pred ---------c------------------cccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccc--cC---CHH
Q 027388 136 ---------R------------------RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS--WS---TEA 183 (224)
Q Consensus 136 ---------~------------------~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~--~~---~~~ 183 (224)
+ ..+........+.|+.+-............|+|+.......+ |. +..
T Consensus 112 L~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~ 191 (246)
T PF11599_consen 112 LRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGG 191 (246)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCC
Confidence 0 011122345666666541110000134557999977544433 11 344
Q ss_pred HHHHHHHHHHhhccCCeEEEEEe
Q 027388 184 RARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 184 ~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
-...+|..+..+|-.++++.++.
T Consensus 192 p~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 192 PVAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHHHHHHHCCS-TT-EEEEEE
T ss_pred cHHHHHHHHHhhCCCCcEEEEec
Confidence 56789999999996667777753
No 281
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.45 E-value=0.056 Score=43.23 Aligned_cols=115 Identities=14% Similarity=-0.005 Sum_probs=72.5
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc---
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL--- 160 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~--- 160 (224)
....|+.+|||--.-...+.......++=+|.-. .++.-++.+...+ .....+.+++.+|+. ..+....
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~-v~~~K~~~l~~~~------~~~~~~~~~v~~Dl~-~~w~~~L~~~ 152 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPA-VLAFKEKVLAELG------AEPPAHRRAVPVDLR-QDWPAALAAA 152 (260)
T ss_pred CCcEEEEeCCccccHHHhcCCCCCCeEEECCChH-HHHHHHHHHHHcC------CCCCCceEEeccCch-hhHHHHHHhC
Confidence 3457999999987666555222223455555444 3444444443110 113456788888886 2221111
Q ss_pred -CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 161 -ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 161 -~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
+....--++++-+++.|+ +.+...++++.+.+...||+.+++...+
T Consensus 153 gfd~~~ptl~i~EGvl~YL--~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 153 GFDPTAPTAWLWEGLLMYL--TEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CCCCCCCeeeeecchhhcC--CHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 122345577778888888 7888999999999999999999998644
No 282
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.41 E-value=0.026 Score=45.29 Aligned_cols=118 Identities=19% Similarity=0.132 Sum_probs=80.1
Q ss_pred cCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..++++|=||.|.|......+++ ....+..+|+....++..++-+...+- .--+.++.+..+|-..+-.. .
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~-----gy~~~~v~l~iGDG~~fl~~-~-- 191 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLAC-----GYEGKKVKLLIGDGFLFLED-L-- 191 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhc-----ccCCCceEEEeccHHHHHHH-h--
Confidence 46889999999999999887765 456788999999999999888752110 01134577778875443211 0
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
..+.||+|+.-..=--...-..-...++..+.+.||+||+++.....
T Consensus 192 ~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 192 KENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred ccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 36899999964321000000123567889999999999999987543
No 283
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.40 E-value=0.006 Score=51.41 Aligned_cols=61 Identities=18% Similarity=0.158 Sum_probs=50.2
Q ss_pred eEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388 87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (224)
Q Consensus 87 ~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (224)
-+||||+|||-++......+...+++++.=..|.+.|++... ..++..+++++...-.++.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~--------kng~SdkI~vInkrStev~ 129 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMH--------KNGMSDKINVINKRSTEVK 129 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHh--------cCCCccceeeeccccceee
Confidence 589999999988887776777789999999999999999987 4577778888776655544
No 284
>PRK11524 putative methyltransferase; Provisional
Probab=96.36 E-value=0.013 Score=47.52 Aligned_cols=47 Identities=28% Similarity=0.260 Sum_probs=40.6
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~ 128 (224)
...+++.|||.-||+|..+... .....+++|+|++++.++.|++++.
T Consensus 205 ~S~~GD~VLDPF~GSGTT~~AA-~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 205 SSNPGDIVLDPFAGSFTTGAVA-KASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred hCCCCCEEEECCCCCcHHHHHH-HHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 4578999999999999777754 4567799999999999999999975
No 285
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.36 E-value=0.04 Score=45.36 Aligned_cols=116 Identities=17% Similarity=0.217 Sum_probs=71.0
Q ss_pred EEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCee
Q 027388 88 VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFD 167 (224)
Q Consensus 88 iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D 167 (224)
|+|+-||.|.+..-+...++..+.++|+++..++..+.++. . .++++|+.++.... ...+|
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~------------~---~~~~~Di~~~~~~~----~~~~d 61 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG------------N---KVPFGDITKISPSD----IPDFD 61 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC------------C---CCCccChhhhhhhh----CCCcC
Confidence 58999999999988876676667799999999999988865 1 34567777665321 23589
Q ss_pred EEEEccccccc---------cCCHHHHHHHHHHHHhhccCCeEEEEEeCC---------hHHHHHHhhhcccc
Q 027388 168 ICSCQFAMHYS---------WSTEARARRALANVSALLRPGGTFIGTMPD---------ANVIIKKLREEHFC 222 (224)
Q Consensus 168 ~i~~~~~l~~~---------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~---------~~~~~~~~~~~gf~ 222 (224)
+++....-.-+ .+....+...+-++.+.++|.-+++=.++. ...+...|++.||.
T Consensus 62 vl~gg~PCq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~ 134 (315)
T TIGR00675 62 ILLGGFPCQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYK 134 (315)
T ss_pred EEEecCCCcccchhcccCCCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCE
Confidence 99855321111 011112222233444555775333322321 35567777787864
No 286
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.31 E-value=0.015 Score=44.96 Aligned_cols=45 Identities=29% Similarity=0.398 Sum_probs=34.1
Q ss_pred HhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHH
Q 027388 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (224)
Q Consensus 80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~ 125 (224)
....++..|||.-||+|..+.... ....+++|+|+++..++.|++
T Consensus 187 ~~t~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 187 ASTNPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHS-TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred hhhccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence 346789999999999998777654 566689999999999999874
No 287
>PHA01634 hypothetical protein
Probab=96.28 E-value=0.012 Score=41.23 Aligned_cols=45 Identities=7% Similarity=-0.000 Sum_probs=40.9
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~ 128 (224)
.+++|+|||++-|.-++.++-.+...|+++++++...+..+.+++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhh
Confidence 689999999999999998887788899999999999999988776
No 288
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.26 E-value=0.028 Score=46.12 Aligned_cols=116 Identities=18% Similarity=0.290 Sum_probs=74.0
Q ss_pred eEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCe
Q 027388 87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF 166 (224)
Q Consensus 87 ~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 166 (224)
+++|+-||-|.+...+...++..+.++|+++...+..+.++. ....+|+.++..... +. .+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~----------------~~~~~Di~~~~~~~l--~~-~~ 62 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP----------------EVICGDITEIDPSDL--PK-DV 62 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT----------------EEEESHGGGCHHHHH--HH-T-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc----------------ccccccccccccccc--cc-cc
Confidence 689999999999998877777778899999999999888753 667888887764322 22 69
Q ss_pred eEEEEccccccc--------c-CCHHHHHHHHHHHHhhccCCeEEEEEeCC---------hHHHHHHhhhccc
Q 027388 167 DICSCQFAMHYS--------W-STEARARRALANVSALLRPGGTFIGTMPD---------ANVIIKKLREEHF 221 (224)
Q Consensus 167 D~i~~~~~l~~~--------~-~~~~~~~~~l~~~~~~lk~gG~li~~~~~---------~~~~~~~~~~~gf 221 (224)
|+++....-+-+ . +....+...+-++.+.++|.-+|+=.+++ ...+.+.|.+.||
T Consensus 63 D~l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY 135 (335)
T PF00145_consen 63 DLLIGGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGY 135 (335)
T ss_dssp SEEEEE---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTE
T ss_pred eEEEeccCCceEeccccccccccccchhhHHHHHHHhhccceEEEecccceeeccccccccccccccccccce
Confidence 999965421111 0 11111233344555667886555534442 4677788888886
No 289
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.15 E-value=0.013 Score=39.69 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhh-cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCCh
Q 027388 70 NNWIKSVLVQLYA-RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE 117 (224)
Q Consensus 70 ~~~~~~~~~~~~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~ 117 (224)
..|+..+...... .+....+|||||+|-+.--|...+. .=+|+|.-.
T Consensus 43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~ 90 (112)
T PF07757_consen 43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR 90 (112)
T ss_pred HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence 3444444443322 2456799999999966555544443 667888654
No 290
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.00 E-value=0.021 Score=47.60 Aligned_cols=127 Identities=13% Similarity=0.098 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhcc---CCcccccccccCCCCe
Q 027388 69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYN---GDADHHQRRKKFSFPA 144 (224)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~---~~~~~~~~~~~~~~~v 144 (224)
....+.++++.+..++++...|+|.|-|.....++.. ....-+|+++....-+.+..... .......+. ...+
T Consensus 177 ~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~---~~~~ 253 (419)
T KOG3924|consen 177 QLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK---PNKI 253 (419)
T ss_pred hHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC---cCce
Confidence 3455667788888899999999999999988877654 34456688877665444433322 111111001 3346
Q ss_pred eEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 145 ~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.++++++..-..... -....++|+++.+.. .+++..-+.++..-|++|..++-.
T Consensus 254 ~~i~gsf~~~~~v~e--I~~eatvi~vNN~~F-----dp~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 254 ETIHGSFLDPKRVTE--IQTEATVIFVNNVAF-----DPELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred eecccccCCHHHHHH--HhhcceEEEEecccC-----CHHHHHhhHHHHhhCCCcceEecc
Confidence 778888765332221 146889999988763 255555666999999999998854
No 291
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.97 E-value=0.045 Score=42.71 Aligned_cols=104 Identities=18% Similarity=0.211 Sum_probs=66.9
Q ss_pred HHHhhcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhH----HHHHHHhccCCcccccccccCCCCeeEEeccc
Q 027388 78 VQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGS----IEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151 (224)
Q Consensus 78 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~----~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 151 (224)
.+++++++.+||=+|+++|.....+... ...-|++|+.|.-. +..|+++- |+.-+.-|+
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRt---------------NiiPIiEDA 214 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRT---------------NIIPIIEDA 214 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccC---------------CceeeeccC
Confidence 3557789999999999999876665542 44579999998753 44455443 366666676
Q ss_pred cccc-cccccCCCCCeeEEEEccccccccCCHHHH-HHHHHHHHhhccCCeEEEEEe
Q 027388 152 YEVH-LDKVLADDAPFDICSCQFAMHYSWSTEARA-RRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 152 ~~~~-~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~-~~~l~~~~~~lk~gG~li~~~ 206 (224)
..-. .-. .-.-+|+|++.-+ ++++ ..+.-+....||+||.++++.
T Consensus 215 rhP~KYRm---lVgmVDvIFaDva-------qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 215 RHPAKYRM---LVGMVDVIFADVA-------QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred CCchheee---eeeeEEEEeccCC-------CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 4211 000 1245677775432 2333 334457788899999999863
No 292
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.91 E-value=0.066 Score=48.66 Aligned_cols=132 Identities=17% Similarity=0.137 Sum_probs=75.8
Q ss_pred CCCeEEEecCCCchhHHHHHhhc-------------CCeEEEEeCCh---hHHHHHHHhccCCcccccc--------ccc
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAK-------------IGYYVGIDIAE---GSIEDCRTRYNGDADHHQR--------RKK 139 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~-------------~~~~~gvD~s~---~~~~~a~~~~~~~~~~~~~--------~~~ 139 (224)
+.-+|+|+|-|+|.+...+.+.. .-+++.+|..+ ..+..+.+.........+. ..+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 44789999999999766554321 12678999543 3333332221110000000 001
Q ss_pred --------CCCCeeEEeccccccccccccCCCCCeeEEEEccc-cccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChH
Q 027388 140 --------FSFPARLICGDCYEVHLDKVLADDAPFDICSCQFA-MHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (224)
Q Consensus 140 --------~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~-l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~ 210 (224)
....+++..+|+.+.-.. ....+|+++.... .... ++-=-..+|+.+.+++++||.|.=.+ ...
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~----~~~~~d~~~lD~FsP~~n--p~~W~~~~~~~l~~~~~~~~~~~t~t-~a~ 209 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQ----LDARADAWFLDGFAPAKN--PDMWSPNLFNALARLARPGATLATFT-SAG 209 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHh----ccccccEEEeCCCCCccC--hhhccHHHHHHHHHHhCCCCEEEEee-hHH
Confidence 011345667787643210 1256999997642 1111 11112679999999999999887444 557
Q ss_pred HHHHHhhhcccc
Q 027388 211 VIIKKLREEHFC 222 (224)
Q Consensus 211 ~~~~~~~~~gf~ 222 (224)
.++..|.++||.
T Consensus 210 ~vr~~l~~~GF~ 221 (662)
T PRK01747 210 FVRRGLQEAGFT 221 (662)
T ss_pred HHHHHHHHcCCe
Confidence 889999999995
No 293
>PRK13699 putative methylase; Provisional
Probab=95.89 E-value=0.032 Score=43.67 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=40.0
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~ 128 (224)
...++..|||.-||+|..+.... ....+++|+|+++...+.+.+++.
T Consensus 160 ~s~~g~~vlDpf~Gsgtt~~aa~-~~~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 160 FTHPNAIVLDPFAGSGSTCVAAL-QSGRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred hCCCCCEEEeCCCCCCHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHH
Confidence 35688999999999998777654 556689999999999999999976
No 294
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=95.88 E-value=0.066 Score=45.66 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=66.8
Q ss_pred cCCCeEEEecCCCch--hHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec-ccccccccc
Q 027388 83 RRGDVVLDLACGKGG--DLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHLDK 158 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~--~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~ 158 (224)
..++.++|+|.|.|. ++...+.. ....+..||.|..|.....+.+.. +.. .. -.++.. .+.+.-++
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~------~g--~~~v~~~~~~r~~~p- 268 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSH------IG--EPIVRKLVFHRQRLP- 268 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhh------cC--chhccccchhcccCC-
Confidence 356778888887664 33333322 245788999999999999888763 000 01 011111 11111111
Q ss_pred ccCCCCCeeEEEEccccccccCCHHHHHHHHH-HHHhhccCCeEEEEE
Q 027388 159 VLADDAPFDICSCQFAMHYSWSTEARARRALA-NVSALLRPGGTFIGT 205 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~-~~~~~lk~gG~li~~ 205 (224)
......||+|++.+.++++.+.. ....+.+ .+++..++|+.+++.
T Consensus 269 -i~~~~~yDlvi~ah~l~~~~s~~-~R~~v~~s~~r~~~r~g~~lViI 314 (491)
T KOG2539|consen 269 -IDIKNGYDLVICAHKLHELGSKF-SRLDVPESLWRKTDRSGYFLVII 314 (491)
T ss_pred -CCcccceeeEEeeeeeeccCCch-hhhhhhHHHHHhccCCCceEEEE
Confidence 11357799999999999886555 4444444 455566888888775
No 295
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.83 E-value=0.072 Score=45.02 Aligned_cols=111 Identities=21% Similarity=0.180 Sum_probs=66.5
Q ss_pred hhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc-ccccccc
Q 027388 81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD-CYEVHLD 157 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d-~~~~~~~ 157 (224)
...++.+||.+|||. |..+..+++.... .++++|.++...+.+++... ...+.+...+ +... ..
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~------------~~vi~~~~~~~~~~~-l~ 247 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG------------AETINFEEVDDVVEA-LR 247 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC------------cEEEcCCcchHHHHH-HH
Confidence 345778999999988 7788888766543 69999999999998887532 0001111111 1000 00
Q ss_pred cccCCCCCeeEEEEccc-----------cccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 158 KVLADDAPFDICSCQFA-----------MHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 158 ~~~~~~~~~D~i~~~~~-----------l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
... ....+|+|+-.-. +.+++....+....+..+.+.++++|.+++.
T Consensus 248 ~~~-~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 248 ELT-GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred HHc-CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 000 2346898876421 1111112233456788899999999998864
No 296
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.78 E-value=0.028 Score=44.65 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=41.3
Q ss_pred HHHHHHHHHHh-hcCCCeEEEecCCCchhHHHHHhh---------cCCeEEEEeCChhHHHHHHHhccC
Q 027388 71 NWIKSVLVQLY-ARRGDVVLDLACGKGGDLIKWDKA---------KIGYYVGIDIAEGSIEDCRTRYNG 129 (224)
Q Consensus 71 ~~~~~~~~~~~-~~~~~~iLDiGcG~G~~~~~l~~~---------~~~~~~gvD~s~~~~~~a~~~~~~ 129 (224)
.|+........ +..+.+|+|+|+|+|.++..++.. ...+++.||+|+.+.+.-++++..
T Consensus 4 ~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 4 RWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 34444555442 333579999999999999887752 135799999999999999998874
No 297
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.70 E-value=0.15 Score=42.31 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=80.4
Q ss_pred CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (224)
..+++|+-||.|.+..-+...++.-+.++|+++..++.-+.+... ..+...|+.+...... ...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~--------------~~~~~~di~~~~~~~~--~~~ 66 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH--------------GDIILGDIKELDGEAL--RKS 66 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC--------------CceeechHhhcChhhc--ccc
Confidence 458999999999999888766777788999999999999988761 3566677766554211 111
Q ss_pred CeeEEEEccccccc---------cCCHHHHHHHHHHHHhhccCCeEEEEE-eC--------ChHHHHHHhhhcccc
Q 027388 165 PFDICSCQFAMHYS---------WSTEARARRALANVSALLRPGGTFIGT-MP--------DANVIIKKLREEHFC 222 (224)
Q Consensus 165 ~~D~i~~~~~l~~~---------~~~~~~~~~~l~~~~~~lk~gG~li~~-~~--------~~~~~~~~~~~~gf~ 222 (224)
.+|+++...--+.+ .++...+.-.+.++...++| -.+++. ++ ....+.+.|++.||.
T Consensus 67 ~~DvligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 67 DVDVLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred CCCEEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence 78999965432222 11222233455667777788 455553 22 346778888888883
No 298
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.062 Score=44.48 Aligned_cols=61 Identities=8% Similarity=0.011 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh---------cCCeEEEEeCChhHHHHHHHhccCC
Q 027388 70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA---------KIGYYVGIDIAEGSIEDCRTRYNGD 130 (224)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~---------~~~~~~gvD~s~~~~~~a~~~~~~~ 130 (224)
..|+..+++....+.+..++|||.|+|.++..++.. ...++..|++|+...+.-++++...
T Consensus 63 a~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 63 AEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 344444555554555678999999999988877652 2568999999999998888887743
No 299
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.58 E-value=0.026 Score=43.64 Aligned_cols=103 Identities=18% Similarity=0.206 Sum_probs=66.8
Q ss_pred CCeEEEecCCCchhHHHHHhhc------C----CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc
Q 027388 85 GDVVLDLACGKGGDLIKWDKAK------I----GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~------~----~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 154 (224)
-.+++|+.+..|.|+..+.+.- . .++++||+-+ +.++. .|.-+++|++..
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-------------------MaPI~-GV~qlq~DIT~~ 101 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-------------------MAPIE-GVIQLQGDITSA 101 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-------------------CCccC-ceEEeecccCCH
Confidence 4689999999999998876531 1 1389999865 12223 267778888764
Q ss_pred ccccc---cCCCCCeeEEEEccc-----cccccC--CHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 155 HLDKV---LADDAPFDICSCQFA-----MHYSWS--TEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 155 ~~~~~---~~~~~~~D~i~~~~~-----l~~~~~--~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
..... .+..+..|+|+|.++ +|-+.+ ..+-+.++|.-...+|+|||.|+....
T Consensus 102 stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 102 STAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred hHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 43211 124579999999874 443300 111234566667789999999996543
No 300
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.54 E-value=0.12 Score=45.30 Aligned_cols=103 Identities=15% Similarity=0.105 Sum_probs=63.9
Q ss_pred cCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc--------
Q 027388 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-------- 153 (224)
Q Consensus 83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-------- 153 (224)
.++.+|+=+|||. |..+...++.....|+++|.++..++.+++.-. ++...+..+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA----------------~~v~i~~~e~~~~~~gy 226 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA----------------EFLELDFEEEGGSGDGY 226 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC----------------eEEEeccccccccccch
Confidence 3688999999998 556666666655689999999999999887422 221111110
Q ss_pred ---cccc------cc-cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 154 ---VHLD------KV-LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 154 ---~~~~------~~-~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.... .. ......+|+|+..-... ....+..+.++..+.+||||+++..
T Consensus 227 a~~~s~~~~~~~~~~~~~~~~gaDVVIetag~p----g~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 227 AKVMSEEFIKAEMALFAEQAKEVDIIITTALIP----GKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred hhhcchhHHHHHHHHHHhccCCCCEEEECCCCC----cccCcchHHHHHHHhcCCCCEEEEE
Confidence 0000 00 00115799998765431 1122334458999999999987754
No 301
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.41 E-value=0.046 Score=47.32 Aligned_cols=102 Identities=18% Similarity=0.198 Sum_probs=73.3
Q ss_pred CeEEEecCCCchhHHHHHhh-----cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 86 DVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~~l~~~-----~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
..|+=+|+|.|-+....++. ...++++|+-++.++...+.+ + ...+..+|+++.+|+.....
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n--------~~~W~~~Vtii~~DMR~w~a---- 435 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-N--------FECWDNRVTIISSDMRKWNA---- 435 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-c--------hhhhcCeeEEEeccccccCC----
Confidence 45889999999877765542 234789999999999888763 3 34677789999999998874
Q ss_pred CCCCCeeEEEEccccccccCCHHH-HHHHHHHHHhhccCCeEEEE
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEAR-ARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~-~~~~l~~~~~~lk~gG~li~ 204 (224)
+..+.|++++= .|.-+ +..+ -...|..+.+.|||+|+.|=
T Consensus 436 -p~eq~DI~VSE-LLGSF--GDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 436 -PREQADIIVSE-LLGSF--GDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred -chhhccchHHH-hhccc--cCccCCHHHHHHHHhhcCCCceEcc
Confidence 35899999842 22221 1111 23577888999999998774
No 302
>PRK13699 putative methylase; Provisional
Probab=95.34 E-value=0.072 Score=41.68 Aligned_cols=76 Identities=14% Similarity=0.209 Sum_probs=47.9
Q ss_pred eeEEeccccccccccccCCCCCeeEEEEcccccc----c-------cCCHHHHHHHHHHHHhhccCCeEEEEEeCC--hH
Q 027388 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY----S-------WSTEARARRALANVSALLRPGGTFIGTMPD--AN 210 (224)
Q Consensus 144 v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~----~-------~~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~ 210 (224)
++++++|..+.-. . .+++++|+|+..--... . ....+-...++.++.|+|||||.+++-... ..
T Consensus 2 ~~l~~gD~le~l~-~--lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~ 78 (227)
T PRK13699 2 SRFILGNCIDVMA-R--FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVD 78 (227)
T ss_pred CeEEechHHHHHH-h--CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHH
Confidence 3567777765411 0 15788999987642210 0 000122467889999999999988864332 45
Q ss_pred HHHHHhhhcccc
Q 027388 211 VIIKKLREEHFC 222 (224)
Q Consensus 211 ~~~~~~~~~gf~ 222 (224)
.+...+++.||.
T Consensus 79 ~~~~al~~~GF~ 90 (227)
T PRK13699 79 RFMAAWKNAGFS 90 (227)
T ss_pred HHHHHHHHCCCE
Confidence 677788888874
No 303
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.23 E-value=0.38 Score=36.38 Aligned_cols=105 Identities=13% Similarity=0.155 Sum_probs=70.5
Q ss_pred cCCCeEEEecCCCchhHHHHHhh-----cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~-----~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (224)
.++..|+|+|.-.|+-++..+.. ...+|+++|++-..+..+..... .+.|+.++-.+....
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p--------------~i~f~egss~dpai~ 133 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVP--------------DILFIEGSSTDPAIA 133 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCC--------------CeEEEeCCCCCHHHH
Confidence 47889999999888866655431 23589999999877665554433 488999886543211
Q ss_pred cc--cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 158 KV--LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 158 ~~--~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.- ....+.--+.+|..+-|++ +...+.++-+..+|..|.++++.
T Consensus 134 eqi~~~~~~y~kIfvilDsdHs~----~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 134 EQIRRLKNEYPKIFVILDSDHSM----EHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred HHHHHHhcCCCcEEEEecCCchH----HHHHHHHHHhhhHhhcCceEEEe
Confidence 00 0012222444555566654 77788899999999999999986
No 304
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.18 E-value=0.021 Score=41.74 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=34.1
Q ss_pred CCCeeEEEEcccccccc-------CCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 163 DAPFDICSCQFAMHYSW-------STEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~-------~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
.+.||.+.|..+++|+= -....-...+.++.++||+||.|++..|
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 57899999998888760 0112235677889999999999999876
No 305
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=94.89 E-value=1.2 Score=35.29 Aligned_cols=111 Identities=17% Similarity=0.134 Sum_probs=61.4
Q ss_pred cCCCeEEEecCCCchhHHHHHh---h---cCCeEEEEeCChh--------------------------HHHHHHHhccCC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDK---A---KIGYYVGIDIAEG--------------------------SIEDCRTRYNGD 130 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~---~---~~~~~~gvD~s~~--------------------------~~~~a~~~~~~~ 130 (224)
.-+..|+|+||-.|..+..+.. . ...++++.|-=+. ..+..++++...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 4567899999999976654322 1 2346888873111 234444444421
Q ss_pred cccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388 131 ADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (224)
Q Consensus 131 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~ 209 (224)
+ ....+++++.+.+.+... .. +...+-++....-++ +.....|..+...|.|||++++.-.+.
T Consensus 153 g-------l~~~~v~~vkG~F~dTLp-~~--p~~~IAll~lD~DlY------esT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 153 G-------LLDDNVRFVKGWFPDTLP-DA--PIERIALLHLDCDLY------ESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp T-------TSSTTEEEEES-HHHHCC-C---TT--EEEEEE---SH------HHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred C-------CCcccEEEECCcchhhhc-cC--CCccEEEEEEeccch------HHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 1 124578999998865422 11 234555554443332 557889999999999999999987764
No 306
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.87 E-value=0.21 Score=41.36 Aligned_cols=96 Identities=15% Similarity=0.083 Sum_probs=56.4
Q ss_pred cCCCeEEEecCCC-chhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 83 RRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 83 ~~~~~iLDiGcG~-G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
.++.+||=+|||. |.++.++++... .+++++|.++..++.+++.-. ..-+.....++.+...
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa------------~~vi~~~~~~~~~~~~---- 231 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGA------------DKLVNPQNDDLDHYKA---- 231 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCC------------cEEecCCcccHHHHhc----
Confidence 4577888888754 555566665544 478999999999998876422 0000111111111111
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
..+.+|+|+-.-. . ...+....+.|++||.+++.
T Consensus 232 -~~g~~D~vid~~G------~----~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 232 -EKGYFDVSFEVSG------H----PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred -cCCCCCEEEECCC------C----HHHHHHHHHHhhcCCEEEEE
Confidence 1235898875421 1 13456677889999988864
No 307
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.87 E-value=0.031 Score=43.66 Aligned_cols=86 Identities=17% Similarity=0.129 Sum_probs=46.5
Q ss_pred CeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccccccc-ccCCCCeeEEeccccccccccccCCCC
Q 027388 86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR-KKFSFPARLICGDCYEVHLDKVLADDA 164 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (224)
.+|||.-+|-|+.+.-++.. +++|+++|-|+-+....+.-+..-. ...+. .....+++++++|..++... +..
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~-G~~V~~lErspvia~Ll~dGL~r~~-~~~~~~~~~~~ri~l~~~d~~~~L~~----~~~ 150 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL-GCKVTGLERSPVIAALLKDGLKRAQ-QDPELLAEAMRRIQLIHGDALEYLRQ----PDN 150 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH-T--EEEEE--HHHHHHHHHHHHHHH-HSTTTHHHHHHHEEEEES-CCCHCCC----HSS
T ss_pred CEEEECCCcchHHHHHHHcc-CCeEEEEECCHHHHHHHHHHHHHHH-hCcHhHHHHHhCCEEEcCCHHHHHhh----cCC
Confidence 48999999999999988754 4589999999987666554432100 00000 11224689999998775321 468
Q ss_pred CeeEEEEcccccc
Q 027388 165 PFDICSCQFAMHY 177 (224)
Q Consensus 165 ~~D~i~~~~~l~~ 177 (224)
+||+|+..-.+.+
T Consensus 151 s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 151 SFDVVYFDPMFPE 163 (234)
T ss_dssp --SEEEE--S---
T ss_pred CCCEEEECCCCCC
Confidence 9999998765543
No 308
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.79 E-value=0.42 Score=39.97 Aligned_cols=98 Identities=19% Similarity=0.147 Sum_probs=61.1
Q ss_pred CCCeEEEecCCC-chhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec-ccccccccccc
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHLDKVL 160 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~ 160 (224)
++.+++=+|||. |.++..+++. +..+++.+|.++..++.|++.... ..+..... +.........
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~------------~~~~~~~~~~~~~~~~~~t- 234 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA------------DVVVNPSEDDAGAEILELT- 234 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC------------eEeecCccccHHHHHHHHh-
Confidence 445899999998 6555666554 557899999999999999986541 00111111 1100000000
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
....+|+++-.-. ....+..+.+.+++||.+++.
T Consensus 235 -~g~g~D~vie~~G----------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 235 -GGRGADVVIEAVG----------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred -CCCCCCEEEECCC----------CHHHHHHHHHHhcCCCEEEEE
Confidence 1247999984332 123788899999999987764
No 309
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.68 E-value=0.35 Score=39.59 Aligned_cols=100 Identities=19% Similarity=0.093 Sum_probs=61.6
Q ss_pred hhcCCCeEEEecCCC-chhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec--c-cccc-
Q 027388 81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG--D-CYEV- 154 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~--d-~~~~- 154 (224)
..+.+.++|=+|+|. |-.+..+++. +..+++.+|+++..++.|++--. .+..... + ...+
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga--------------~~~~~~~~~~~~~~~~ 231 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGA--------------TVTDPSSHKSSPQELA 231 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCC--------------eEEeeccccccHHHHH
Confidence 346789999999998 5455555543 66799999999999999998322 0111111 1 1110
Q ss_pred -ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 155 -HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 155 -~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
...... ....+|+.+-...++ ..++.....++.||.+++.
T Consensus 232 ~~v~~~~-g~~~~d~~~dCsG~~----------~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 232 ELVEKAL-GKKQPDVTFDCSGAE----------VTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred HHHHhhc-cccCCCeEEEccCch----------HHHHHHHHHhccCCEEEEe
Confidence 000000 234588888654443 3455567888999997764
No 310
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=94.65 E-value=0.031 Score=45.81 Aligned_cols=114 Identities=21% Similarity=0.251 Sum_probs=74.6
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHH-------HHhccCCccccccccc-CCCCeeEEecccc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDC-------RTRYNGDADHHQRRKK-FSFPARLICGDCY 152 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a-------~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~ 152 (224)
...+|+.|+|--.|||.++...+ ..++.|+|.|++-.++... +.+++ +-+ .+.-+.++.+|..
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa-~FGa~viGtDIDyr~vragrg~~~si~aNFk--------QYg~~~~fldvl~~D~s 275 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAA-HFGAYVIGTDIDYRTVRAGRGEDESIKANFK--------QYGSSSQFLDVLTADFS 275 (421)
T ss_pred ccCCCCEEecCccccCceeeehh-hhcceeeccccchheeecccCCCcchhHhHH--------HhCCcchhhheeeeccc
Confidence 56789999999999999998765 5667899999999887732 22332 222 1222456777776
Q ss_pred ccccccccCCCCCeeEEEEcccc------------------------ccccC-CH----HHHHHHHHHHHhhccCCeEEE
Q 027388 153 EVHLDKVLADDAPFDICSCQFAM------------------------HYSWS-TE----ARARRALANVSALLRPGGTFI 203 (224)
Q Consensus 153 ~~~~~~~~~~~~~~D~i~~~~~l------------------------~~~~~-~~----~~~~~~l~~~~~~lk~gG~li 203 (224)
+-++. ..-.||.|+|.-.. .|+.. .. .-....|.-..+.|..||.++
T Consensus 276 n~~~r----sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv 351 (421)
T KOG2671|consen 276 NPPLR----SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLV 351 (421)
T ss_pred Ccchh----hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEE
Confidence 65553 35789999986311 11111 00 112345566778889999998
Q ss_pred EEeC
Q 027388 204 GTMP 207 (224)
Q Consensus 204 ~~~~ 207 (224)
+=.|
T Consensus 352 ~w~p 355 (421)
T KOG2671|consen 352 FWLP 355 (421)
T ss_pred EecC
Confidence 7654
No 311
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.64 E-value=0.91 Score=31.02 Aligned_cols=104 Identities=17% Similarity=0.082 Sum_probs=66.2
Q ss_pred CCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEE
Q 027388 93 CGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDIC 169 (224)
Q Consensus 93 cG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i 169 (224)
||.|.++..+++ .....++.+|.++..++.++... +.++.+|..+...-... ....++.+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~----------------~~~i~gd~~~~~~l~~a-~i~~a~~v 66 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG----------------VEVIYGDATDPEVLERA-GIEKADAV 66 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT----------------SEEEES-TTSHHHHHHT-TGGCESEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc----------------cccccccchhhhHHhhc-CccccCEE
Confidence 566677776664 23348999999999988887652 56888998765421111 34678877
Q ss_pred EEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhccc
Q 027388 170 SCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEHF 221 (224)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~gf 221 (224)
++..- .+.....+....+.+.|...++....+.. ..+.|++.|.
T Consensus 67 v~~~~-------~d~~n~~~~~~~r~~~~~~~ii~~~~~~~-~~~~l~~~g~ 110 (116)
T PF02254_consen 67 VILTD-------DDEENLLIALLARELNPDIRIIARVNDPE-NAELLRQAGA 110 (116)
T ss_dssp EEESS-------SHHHHHHHHHHHHHHTTTSEEEEEESSHH-HHHHHHHTT-
T ss_pred EEccC-------CHHHHHHHHHHHHHHCCCCeEEEEECCHH-HHHHHHHCCc
Confidence 76532 24445555566677788888888876644 4566666664
No 312
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.57 E-value=0.14 Score=42.59 Aligned_cols=100 Identities=19% Similarity=0.115 Sum_probs=71.7
Q ss_pred CCeEEEecCCCchhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 85 GDVVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
+.+|||.=+|+|.=++.++..... +++.-|+|+..++.+++++..+ ...+...+..|+..+-.. ..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N---------~~~~~~v~n~DAN~lm~~----~~ 119 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN---------SGEDAEVINKDANALLHE----LH 119 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc---------CcccceeecchHHHHHHh----cC
Confidence 789999999999988888765443 8999999999999999998732 122344555666544331 13
Q ss_pred CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
..||+|=..- + =.+..++....+.++.||+|.++
T Consensus 120 ~~fd~IDiDP-F-------GSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 120 RAFDVIDIDP-F-------GSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred CCccEEecCC-C-------CCCchHHHHHHHHhhcCCEEEEE
Confidence 6788874321 1 12456777788888889999987
No 313
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=94.42 E-value=0.074 Score=43.20 Aligned_cols=120 Identities=16% Similarity=0.192 Sum_probs=76.7
Q ss_pred CeEEEecCCCchhHHHHHhhc------------C---------CeEEEEeCCh--hHHHHHHHhccCCccc-------c-
Q 027388 86 DVVLDLACGKGGDLIKWDKAK------------I---------GYYVGIDIAE--GSIEDCRTRYNGDADH-------H- 134 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~~l~~~~------------~---------~~~~gvD~s~--~~~~~a~~~~~~~~~~-------~- 134 (224)
.+||-||.|.|.-...++... . -.++.||+.+ ..++.....+...... +
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 689999999987555443211 1 2688999764 4455555554432000 0
Q ss_pred cccccCCCCeeEEecccccccccccc--CCCCCeeEEEEccccccccC-CHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 135 QRRKKFSFPARLICGDCYEVHLDKVL--ADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 135 ~~~~~~~~~v~~~~~d~~~~~~~~~~--~~~~~~D~i~~~~~l~~~~~-~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.....-..++.|.+.|+.....+++. ......++|+..+.++.+++ +.....++|.++...+++|..|+|.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 01122344689999999887653321 11235788888777766654 4566788999999999999987764
No 314
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.30 E-value=0.98 Score=39.30 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=37.0
Q ss_pred CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhc
Q 027388 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY 127 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~ 127 (224)
..+++|+-||.|++...+...++..+.++|+++.+.+.-+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 4589999999999999886666666789999999999888876
No 315
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.07 E-value=0.19 Score=44.02 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=60.3
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc---------
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE--------- 153 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~--------- 153 (224)
++.+++=+|+|. |..+..++......++.+|.++..++.++. +. ..++..+..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lG---------------a~~v~v~~~e~g~~~~gYa 226 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MG---------------AEFLELDFKEEGGSGDGYA 226 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC---------------CeEEeccccccccccccce
Confidence 468999999987 455555555556679999999998888775 22 1222222110
Q ss_pred ------cc---cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388 154 ------VH---LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (224)
Q Consensus 154 ------~~---~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li 203 (224)
.. ..........+|+|+..-.+.- .+.+.-+.++..+.+|||++++
T Consensus 227 ~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG----~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 227 KVMSEEFIAAEMELFAAQAKEVDIIITTALIPG----KPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred eecCHHHHHHHHHHHHHHhCCCCEEEECcccCC----CCCCeeehHHHHhhCCCCCEEE
Confidence 00 0000001367999986653321 1233446778889999998876
No 316
>PTZ00357 methyltransferase; Provisional
Probab=93.72 E-value=0.26 Score=44.40 Aligned_cols=86 Identities=19% Similarity=0.140 Sum_probs=51.6
Q ss_pred CeEEEecCCCchhHHHHHhh-----cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc-
Q 027388 86 DVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV- 159 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~~l~~~-----~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~- 159 (224)
..|+=+|+|.|-+....++. -..++++||.++..+.....+......+.....-.+..|+++..|+..+.....
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 35899999999887766543 123789999997655444444321111110011124568999999998754210
Q ss_pred -----cCCCCCeeEEEE
Q 027388 160 -----LADDAPFDICSC 171 (224)
Q Consensus 160 -----~~~~~~~D~i~~ 171 (224)
...-+.+|+|++
T Consensus 782 ~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS 798 (1072)
T ss_pred ccccccccccccceehH
Confidence 001147999996
No 317
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=93.68 E-value=0.94 Score=38.27 Aligned_cols=137 Identities=15% Similarity=0.182 Sum_probs=76.6
Q ss_pred HHHHHhhcCCCeEEEecCCCchhHHHHHhh--------cCCeEEEEeC----ChhHHHHHHHhccCCcccccccccCCCC
Q 027388 76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--------KIGYYVGIDI----AEGSIEDCRTRYNGDADHHQRRKKFSFP 143 (224)
Q Consensus 76 ~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~--------~~~~~~gvD~----s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 143 (224)
+++.......-.|+|+|.|.|.....+.+. ..-++++|+. +...++.+.+++... ...++..
T Consensus 102 IleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~f------A~~lgv~ 175 (374)
T PF03514_consen 102 ILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEF------ARSLGVP 175 (374)
T ss_pred HHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHH------HHHcCcc
Confidence 344443445567999999999866666542 1126899999 777888877776521 1222333
Q ss_pred eeEEe---ccccccccccccCCCCCeeEEEEccccccccCCH---HHHHHHHHHHHhhccCCeEEEEEeC---ChHHHHH
Q 027388 144 ARLIC---GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE---ARARRALANVSALLRPGGTFIGTMP---DANVIIK 214 (224)
Q Consensus 144 v~~~~---~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~---~~~~~~l~~~~~~lk~gG~li~~~~---~~~~~~~ 214 (224)
..|.. .+++++.........+.+=+|-|...+|++.+.. ..+...+-...+.|+|.-++++... |...+..
T Consensus 176 fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E~ea~~n~~~F~~ 255 (374)
T PF03514_consen 176 FEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVEQEADHNSPSFLE 255 (374)
T ss_pred EEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEeecCCCCCCchHH
Confidence 33333 3444443332222345555555667788874211 1233344455568899866665422 3344555
Q ss_pred Hhhh
Q 027388 215 KLRE 218 (224)
Q Consensus 215 ~~~~ 218 (224)
.|.+
T Consensus 256 RF~e 259 (374)
T PF03514_consen 256 RFRE 259 (374)
T ss_pred HHHH
Confidence 5544
No 318
>PRK11524 putative methyltransferase; Provisional
Probab=93.66 E-value=0.24 Score=40.11 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=44.9
Q ss_pred eeEEeccccccccccccCCCCCeeEEEEcccccc------c---cCC---HHHHHHHHHHHHhhccCCeEEEEEeCCh-H
Q 027388 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY------S---WST---EARARRALANVSALLRPGGTFIGTMPDA-N 210 (224)
Q Consensus 144 v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~------~---~~~---~~~~~~~l~~~~~~lk~gG~li~~~~~~-~ 210 (224)
..++++|+.+.... . +.++||+|++.-.... . +.. ..-...++..+.++|||||.+++..... .
T Consensus 9 ~~i~~gD~~~~l~~-l--~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~ 85 (284)
T PRK11524 9 KTIIHGDALTELKK-I--PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENM 85 (284)
T ss_pred CEEEeccHHHHHHh-c--ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhh
Confidence 46888998764210 1 4678999998643210 0 000 0123578899999999999998864432 1
Q ss_pred HHHHHhhhccc
Q 027388 211 VIIKKLREEHF 221 (224)
Q Consensus 211 ~~~~~~~~~gf 221 (224)
.....+.+.||
T Consensus 86 ~~~~~~~~~~f 96 (284)
T PRK11524 86 PFIDLYCRKLF 96 (284)
T ss_pred hHHHHHHhcCc
Confidence 22334445554
No 319
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.53 E-value=0.29 Score=34.19 Aligned_cols=85 Identities=19% Similarity=0.152 Sum_probs=54.9
Q ss_pred CchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc--cccccCCCCCeeEEEEc
Q 027388 95 KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDKVLADDAPFDICSCQ 172 (224)
Q Consensus 95 ~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~~D~i~~~ 172 (224)
.|.++..+++....+++++|.++..++.+++.-. -.++..+-.++. ..... ....+|+|+-.
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga---------------~~~~~~~~~~~~~~i~~~~-~~~~~d~vid~ 65 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGA---------------DHVIDYSDDDFVEQIRELT-GGRGVDVVIDC 65 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTE---------------SEEEETTTSSHHHHHHHHT-TTSSEEEEEES
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcc---------------ccccccccccccccccccc-ccccceEEEEe
Confidence 4778888887766899999999999999987543 122222111110 00000 23589999854
Q ss_pred cccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 173 FAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 173 ~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
-.- ...+.....+++++|.+++.
T Consensus 66 ~g~----------~~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 66 VGS----------GDTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp SSS----------HHHHHHHHHHEEEEEEEEEE
T ss_pred cCc----------HHHHHHHHHHhccCCEEEEE
Confidence 321 24777888999999998875
No 320
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.52 E-value=0.056 Score=46.40 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=78.0
Q ss_pred cCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
.++.+|||.=|++|.-++.++.. +...+++.|.++..++..+.++..+ .....+...+.|+..+-....
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N--------~v~~ive~~~~DA~~lM~~~~- 178 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN--------GVEDIVEPHHSDANVLMYEHP- 178 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc--------CchhhcccccchHHHHHHhcc-
Confidence 45678999999999999988864 5678999999999999999988732 333445666677654433210
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
.....||+|=..- + =....||....+.++.||.|+++.-+
T Consensus 179 ~~~~~FDvIDLDP-y-------Gs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 179 MVAKFFDVIDLDP-Y-------GSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred ccccccceEecCC-C-------CCccHHHHHHHHHhhcCCEEEEEecc
Confidence 0347899986432 1 12356888888999999999997433
No 321
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.17 E-value=0.33 Score=40.53 Aligned_cols=43 Identities=16% Similarity=0.024 Sum_probs=35.2
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHh
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTR 126 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~ 126 (224)
+-+.++|+|.|.|.++..+.-...-.|.+||-|....+.|++.
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 4578999999999999888766677899999998777766543
No 322
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.05 E-value=0.35 Score=39.39 Aligned_cols=97 Identities=9% Similarity=0.071 Sum_probs=69.3
Q ss_pred CCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 85 ~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
+.+|.=||.|. |..+..++.....+|+.+|+|...++.....+. .++.+...+..++.. .-
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-------------~rv~~~~st~~~iee-----~v 229 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-------------GRVHTLYSTPSNIEE-----AV 229 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-------------ceeEEEEcCHHHHHH-----Hh
Confidence 45677777776 556666665567899999999988887776654 236666666555443 34
Q ss_pred CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li 203 (224)
.+.|+++..-.+- ....+.-+.+++.+.+|||++++
T Consensus 230 ~~aDlvIgaVLIp----gakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 230 KKADLVIGAVLIP----GAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred hhccEEEEEEEec----CCCCceehhHHHHHhcCCCcEEE
Confidence 7899998643332 44677888999999999999887
No 323
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.76 E-value=1.3 Score=36.19 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=59.5
Q ss_pred hcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc-c
Q 027388 82 ARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-V 159 (224)
Q Consensus 82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~ 159 (224)
..++.+||-.|+|. |..+..++.....+++.++.++...+.+++.-. ..+...-....... .
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~----------------~~~~~~~~~~~~~~~~ 226 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGA----------------DEVLNSLDDSPKDKKA 226 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCC----------------CEEEcCCCcCHHHHHH
Confidence 45677888888763 777777776666679999999988888854311 11111100000000 0
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
......+|+++..... ...+..+.+.|+++|.++..
T Consensus 227 ~~~~~~~D~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 227 AGLGGGFDVIFDFVGT----------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HhcCCCceEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 0034679988753211 23567788999999998864
No 324
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=92.64 E-value=0.34 Score=40.95 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=50.1
Q ss_pred CCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 142 ~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.++++.++++.+..... +++++|.++....+.|+ +.....+.++.+.+.++|||++++-
T Consensus 275 drv~i~t~si~~~L~~~---~~~s~~~~vL~D~~Dwm--~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRL---PPGSFDRFVLSDHMDWM--DPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred CeEEEEeccHHHHHHhC---CCCCeeEEEecchhhhC--CHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 56889999887754211 47899999999999998 7789999999999999999999985
No 325
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.57 E-value=3.2 Score=33.90 Aligned_cols=117 Identities=21% Similarity=0.149 Sum_probs=75.9
Q ss_pred CCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC---
Q 027388 85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA--- 161 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--- 161 (224)
-..|+-+|||--.-+..+-......++-+|.-+ .++.-++.+.+.+ ...+...+++..|+.+.++...+.
T Consensus 93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pe-vi~~K~~~l~e~~------~~~~~~~~~Va~Dl~~~dw~~~L~~~G 165 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPE-VIEFKKKLLAERG------ATPPAHRRLVAVDLREDDWPQALAAAG 165 (297)
T ss_pred ccEEEEeccccccceeecCCCCCCeEEECCCcH-HHHHHHHHhhhcC------CCCCceEEEEeccccccchHHHHHhcC
Confidence 578999999975444433211224566666544 4455445555221 112335788999998554432221
Q ss_pred -CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChH
Q 027388 162 -DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210 (224)
Q Consensus 162 -~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~ 210 (224)
....--++++-+++.|+ +.+...++|..+...+.||-.++...+...
T Consensus 166 ~d~~~pt~~iaEGLl~YL--~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~ 213 (297)
T COG3315 166 FDRSRPTLWIAEGLLMYL--PEEAVDRLLSRIAALSAPGSRVAFDYSLPG 213 (297)
T ss_pred CCcCCCeEEEeccccccC--CHHHHHHHHHHHHHhCCCCceEEEeccccH
Confidence 23455577888899998 888899999999999999998888875333
No 326
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=91.66 E-value=1.8 Score=33.58 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=45.8
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (224)
...-|.+||.|.|+.+..++..+..++..|+.+..++.-.+...+. -+......++|+..+.
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EA----------a~~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEA----------APGKLRIHHGDVLRFK 111 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhc----------CCcceEEeccccceeh
Confidence 5678999999999999999888888999999998887766544321 1224566677766553
No 327
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.48 E-value=3.2 Score=34.20 Aligned_cols=91 Identities=10% Similarity=-0.037 Sum_probs=56.7
Q ss_pred hhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
...++.+||=.|+|. |..+.++++....++++++.++...+.+++.-. . .++ +..+.
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga------------~---~vi--~~~~~----- 219 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGA------------A---SAG--GAYDT----- 219 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCC------------c---eec--ccccc-----
Confidence 345788999888753 445566665555679999999988888877533 1 111 11111
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
..+.+|+++..... . ..+....+.|++||.+++.
T Consensus 220 --~~~~~d~~i~~~~~-------~---~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 220 --PPEPLDAAILFAPA-------G---GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred --CcccceEEEECCCc-------H---HHHHHHHHhhCCCcEEEEE
Confidence 12357766532211 1 3577788899999998763
No 328
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=91.45 E-value=3.2 Score=33.20 Aligned_cols=109 Identities=14% Similarity=0.070 Sum_probs=60.7
Q ss_pred hcCCCeEEEecCCCchhHHHHHhh------cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKA------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~------~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (224)
+.+...++|+|||.|.++..++.. ....++.||-....... -..+.. ......++-+..|+.++.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~-D~~~~~--------~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKA-DNKIRK--------DESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccc-hhhhhc--------cCCCCceEEEEEEeeccc
Confidence 356778999999999999888763 24578999976633322 111110 011134677788888877
Q ss_pred cccccCCC-CCee-EEEEccccccccCCHHHHHHHHHHHHhhcc-------CCeEEEEE
Q 027388 156 LDKVLADD-APFD-ICSCQFAMHYSWSTEARARRALANVSALLR-------PGGTFIGT 205 (224)
Q Consensus 156 ~~~~~~~~-~~~D-~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk-------~gG~li~~ 205 (224)
+....... +.-. ++++-+.-. ....-.|+.+.+..+ ..|.++..
T Consensus 87 l~~~~~~~~~~~~vv~isKHLCG------~ATDlaLRcl~~~~~~~~~~~~~~gi~iA~ 139 (259)
T PF05206_consen 87 LSKLPELQNDEKPVVAISKHLCG------AATDLALRCLLNSQKLSEGNGSVRGIVIAP 139 (259)
T ss_pred hhhcccccCCCCcEEEEEccccc------cchhHHHHhhccCccccccCCccCeEEEEe
Confidence 65443211 1222 222222111 123456666666554 46777754
No 329
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.25 E-value=2 Score=33.66 Aligned_cols=98 Identities=24% Similarity=0.224 Sum_probs=58.6
Q ss_pred cCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
.++.+||-.|+|+ |..+..++.....++++++.++...+.+++... ...+.....+.... .. ..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~-~~--~~ 197 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA------------DHVIDYKEEDLEEE-LR--LT 197 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC------------ceeccCCcCCHHHH-HH--Hh
Confidence 5678999999986 666666766666789999999888777754321 00000000000000 00 00
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
....+|+++....- . ..+..+.+.++++|.++..
T Consensus 198 ~~~~~d~vi~~~~~-------~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 198 GGGGADVVIDAVGG-------P---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred cCCCCCEEEECCCC-------H---HHHHHHHHhcccCCEEEEE
Confidence 24679999854221 1 3456677888999988864
No 330
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.13 E-value=1.5 Score=36.48 Aligned_cols=94 Identities=11% Similarity=-0.022 Sum_probs=55.9
Q ss_pred cCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeC---ChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDI---AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~---s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
.++.+||=+|+|. |.++.++++....++++++. ++..++.+++.-. .++ +..+.....
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga----------------~~v--~~~~~~~~~ 232 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGA----------------TYV--NSSKTPVAE 232 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC----------------EEe--cCCccchhh
Confidence 4678899888865 55666676655558999986 6777777765322 111 111111000
Q ss_pred ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
......+|+|+-.-. . ...+....+.|++||.+++.
T Consensus 233 -~~~~~~~d~vid~~g------~----~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 233 -VKLVGEFDLIIEATG------V----PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred -hhhcCCCCEEEECcC------C----HHHHHHHHHHccCCcEEEEE
Confidence 001346898875432 1 12567788899999988753
No 331
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=91.07 E-value=0.19 Score=35.35 Aligned_cols=69 Identities=23% Similarity=0.286 Sum_probs=44.4
Q ss_pred eeEEeccccccccccccCCCCCeeEEEEccccccccCCHHH----HHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhc
Q 027388 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR----ARRALANVSALLRPGGTFIGTMPDANVIIKKLREE 219 (224)
Q Consensus 144 v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~----~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~ 219 (224)
+++..+|+.+.-.. -...||+|+....- +..+ -..+++.+.+++++||.+.-.+ ....++..|.++
T Consensus 33 L~L~~gDa~~~l~~----l~~~~Da~ylDgFs-----P~~nPelWs~e~~~~l~~~~~~~~~l~Tys-~a~~Vr~~L~~a 102 (124)
T PF05430_consen 33 LTLWFGDAREMLPQ----LDARFDAWYLDGFS-----PAKNPELWSEELFKKLARLSKPGGTLATYS-SAGAVRRALQQA 102 (124)
T ss_dssp EEEEES-HHHHHHH----B-T-EEEEEE-SS------TTTSGGGSSHHHHHHHHHHEEEEEEEEES---BHHHHHHHHHC
T ss_pred EEEEEcHHHHHHHh----CcccCCEEEecCCC-----CcCCcccCCHHHHHHHHHHhCCCcEEEEee-chHHHHHHHHHc
Confidence 56788887653211 24789999976521 1111 2579999999999998776444 347799999999
Q ss_pred ccc
Q 027388 220 HFC 222 (224)
Q Consensus 220 gf~ 222 (224)
||.
T Consensus 103 GF~ 105 (124)
T PF05430_consen 103 GFE 105 (124)
T ss_dssp TEE
T ss_pred CCE
Confidence 985
No 332
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=90.91 E-value=1.4 Score=36.24 Aligned_cols=92 Identities=22% Similarity=0.251 Sum_probs=55.5
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc---cccccccc
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD---CYEVHLDK 158 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d---~~~~~~~~ 158 (224)
++.+||-.|||. |..+..+++.... ++++++.++...+.+++.-. . .++... +.....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~------------~---~vi~~~~~~~~~~~~-- 227 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA------------D---ETVNLARDPLAAYAA-- 227 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC------------C---EEEcCCchhhhhhhc--
Confidence 677888888765 6666666655444 78999999888887655321 0 111111 111111
Q ss_pred ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
....+|+++..... ...+..+.+.|+++|.++..
T Consensus 228 ---~~~~vd~vld~~g~----------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 228 ---DKGDFDVVFEASGA----------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred ---cCCCccEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence 22458999864321 12456778888999988753
No 333
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.65 E-value=1.7 Score=35.99 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=55.4
Q ss_pred hcCCCeEEEecCCC-chhHHHHHhh--cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 82 ARRGDVVLDLACGK-GGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 82 ~~~~~~iLDiGcG~-G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
..++.+||=+|||. |.++..+++. +..+++++|.++..++.++. +. ..+.. + .+.
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~---------------~~~~~-~--~~~--- 218 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD---------------ETYLI-D--DIP--- 218 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC---------------ceeeh-h--hhh---
Confidence 35688999999865 4344555543 34579999999988888764 22 01100 1 111
Q ss_pred ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
....+|+|+-.-. . ......+....++|++||.+++.
T Consensus 219 ---~~~g~d~viD~~G--~-----~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 219 ---EDLAVDHAFECVG--G-----RGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred ---hccCCcEEEECCC--C-----CccHHHHHHHHHhCcCCcEEEEE
Confidence 1225888874221 0 01134677788899999998753
No 334
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.48 E-value=2.3 Score=35.64 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=32.3
Q ss_pred hcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHh
Q 027388 82 ARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTR 126 (224)
Q Consensus 82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~ 126 (224)
..++.+||=.|+|. |.++..+++.... .++++|.++..++.+++.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~ 235 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL 235 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc
Confidence 45677888888754 4455566655444 699999999998888653
No 335
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=89.99 E-value=2.5 Score=31.76 Aligned_cols=106 Identities=14% Similarity=0.082 Sum_probs=56.9
Q ss_pred EEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC--------CCeeEEecccccccccc
Q 027388 88 VLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS--------FPARLICGDCYEVHLDK 158 (224)
Q Consensus 88 iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~--------~~v~~~~~d~~~~~~~~ 158 (224)
|.=||+|+ |.-...++......|+.+|.++..++.+.+++...-..-.+...+. .++. ...|+.+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~----- 75 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEE----- 75 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGG-----
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHH-----
Confidence 44567765 2222222224566999999999999988887652100000000011 1122 2333322
Q ss_pred ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
....|+|+=. +.+..+....+++++.+.+.|+..|.-++..
T Consensus 76 ----~~~adlViEa-----i~E~l~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 76 ----AVDADLVIEA-----IPEDLELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp ----GCTESEEEE------S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred ----Hhhhheehhh-----ccccHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence 2367888633 2335577899999999999999998877654
No 336
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=89.85 E-value=2.8 Score=33.58 Aligned_cols=96 Identities=18% Similarity=0.039 Sum_probs=54.4
Q ss_pred cCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEe-ccccccccccc
Q 027388 83 RRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVHLDKV 159 (224)
Q Consensus 83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~ 159 (224)
.++.+||=+|+|. |..+..+++.... .++.+|.++..++.+++.-. . .++. .+..+ .....
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga------------~---~~i~~~~~~~-~~~~~ 182 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA------------T---ALAEPEVLAE-RQGGL 182 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC------------c---EecCchhhHH-HHHHH
Confidence 4677888888754 4455556555444 48899999988888876422 0 1110 01000 00000
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
. ....+|+++-.-. . ...+....+.++++|.+++.
T Consensus 183 ~-~~~g~d~vid~~G------~----~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 183 Q-NGRGVDVALEFSG------A----TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred h-CCCCCCEEEECCC------C----hHHHHHHHHHhcCCCEEEEe
Confidence 0 2346898874321 1 23566678889999988753
No 337
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=89.53 E-value=0.41 Score=38.72 Aligned_cols=74 Identities=19% Similarity=0.127 Sum_probs=52.5
Q ss_pred CCCeEEEecCCCchhHH-HHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGKGGDLI-KWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~-~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+..|+|+=+|-|.++. .+...+...|+++|.++..++..++.+.. ....+......+|-.... +
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~--------N~V~~r~~i~~gd~R~~~------~ 259 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEA--------NNVMDRCRITEGDNRNPK------P 259 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHh--------cchHHHHHhhhccccccC------c
Confidence 45789999999999999 55556777899999999999999998772 233333445555544333 2
Q ss_pred CCCeeEEEE
Q 027388 163 DAPFDICSC 171 (224)
Q Consensus 163 ~~~~D~i~~ 171 (224)
....|-|..
T Consensus 260 ~~~AdrVnL 268 (351)
T KOG1227|consen 260 RLRADRVNL 268 (351)
T ss_pred cccchheee
Confidence 455666653
No 338
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.34 E-value=5.3 Score=36.07 Aligned_cols=108 Identities=10% Similarity=0.029 Sum_probs=64.8
Q ss_pred CeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 86 DVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
..|+=+|+| +.+..+++ .....++.+|.+++.++.+++. . ...+.+|..+...-.. ..
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-g---------------~~v~~GDat~~~~L~~-ag 461 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKY-G---------------YKVYYGDATQLELLRA-AG 461 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-C---------------CeEEEeeCCCHHHHHh-cC
Confidence 345555554 45554443 3456899999999999988653 1 5788999876542110 03
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH 220 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g 220 (224)
-+++|++++..- .++....+-...+.+.|...++....+.. -.+.+++.|
T Consensus 462 i~~A~~vv~~~~-------d~~~n~~i~~~~r~~~p~~~IiaRa~~~~-~~~~L~~~G 511 (601)
T PRK03659 462 AEKAEAIVITCN-------EPEDTMKIVELCQQHFPHLHILARARGRV-EAHELLQAG 511 (601)
T ss_pred CccCCEEEEEeC-------CHHHHHHHHHHHHHHCCCCeEEEEeCCHH-HHHHHHhCC
Confidence 467888776431 12333334445566778888888776643 344455544
No 339
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.20 E-value=2.2 Score=35.57 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=33.1
Q ss_pred hhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHh
Q 027388 81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTR 126 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~ 126 (224)
...++.+||=.|+|. |..+.++++.... +++++|.++...+.+++.
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~ 220 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF 220 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc
Confidence 345788888888754 5555666655444 599999999988888653
No 340
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=89.20 E-value=2.5 Score=31.74 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=54.8
Q ss_pred CeEEEecCCCchhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc----
Q 027388 86 DVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL---- 160 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---- 160 (224)
..|+.+|||--.....+.... ...++-+|+.. +++.-++.+.... .....+.+++.+|+.+..+....
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~-v~~~K~~~l~~~~------~~~~~~~~~v~~Dl~~~~~~~~L~~~g 152 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPE-VIALKRRLLPESG------ARPPANYRYVPADLRDDSWIDALPKAG 152 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE-HH-HHHHHHHHHHHTH------HHHHEESSEEES-TTSHHHHHHHHHCT
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCCHH-HHHHHHHHHHhCc------ccCCcceeEEeccccchhhHHHHHHhC
Confidence 489999999987777765433 44666777655 4444444444110 01112356799998864332111
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHH
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANV 192 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~ 192 (224)
......-++++-+++.|+ +.+....+++.+
T Consensus 153 ~~~~~ptl~i~Egvl~Yl--~~~~~~~ll~~i 182 (183)
T PF04072_consen 153 FDPDRPTLFIAEGVLMYL--SPEQVDALLRAI 182 (183)
T ss_dssp T-TTSEEEEEEESSGGGS---HHHHHHHHHHH
T ss_pred CCCCCCeEEEEcchhhcC--CHHHHHHHHHHh
Confidence 124566778888889998 667777777654
No 341
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=89.02 E-value=1.1 Score=32.43 Aligned_cols=100 Identities=18% Similarity=0.136 Sum_probs=48.0
Q ss_pred CCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 85 ~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
..-|||+|-|+|+.--.+.+. ...+++.+|---..- ....+..-.++.+|+.+.... ...-.
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~h----------------p~~~P~~~~~ilGdi~~tl~~-~~~~g 91 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACH----------------PSSTPPEEDLILGDIRETLPA-LARFG 91 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-----------------GGG---GGGEEES-HHHHHHH-HHHH-
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccC----------------CCCCCchHheeeccHHHHhHH-HHhcC
Confidence 467999999999988777654 456799999532111 122233356888887654321 11012
Q ss_pred CCeeEEEEccccccccCCHHHHHHHH-----HHHHhhccCCeEEEEEe
Q 027388 164 APFDICSCQFAMHYSWSTEARARRAL-----ANVSALLRPGGTFIGTM 206 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~~~~~~l-----~~~~~~lk~gG~li~~~ 206 (224)
...-++.+....++ ++...+. --+..+|.+||+++-..
T Consensus 92 ~~a~laHaD~G~g~-----~~~d~a~a~~lspli~~~la~gGi~vS~~ 134 (160)
T PF12692_consen 92 AGAALAHADIGTGD-----KEKDDATAAWLSPLIAPVLAPGGIMVSGQ 134 (160)
T ss_dssp S-EEEEEE----S------HHHHHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CceEEEEeecCCCC-----cchhHHHHHhhhHHHHHHhcCCcEEEeCC
Confidence 44555555444432 2222222 23556889999888553
No 342
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.87 E-value=7.8 Score=35.18 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=67.8
Q ss_pred CCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 85 ~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
..+|+=+|||. |......+......++.+|.+++.++.+++. . ...+.+|..+...-.. ..-
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-g---------------~~v~~GDat~~~~L~~-agi 462 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-G---------------MKVFYGDATRMDLLES-AGA 462 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-C---------------CeEEEEeCCCHHHHHh-cCC
Confidence 35677788776 4434343334555899999999999988653 2 5788999876542110 024
Q ss_pred CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH 220 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g 220 (224)
+.+|++++.. +.++....+-...+.+.|.-.++....+... ...+.+.|
T Consensus 463 ~~A~~vvv~~-------~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~-~~~L~~~G 511 (621)
T PRK03562 463 AKAEVLINAI-------DDPQTSLQLVELVKEHFPHLQIIARARDVDH-YIRLRQAG 511 (621)
T ss_pred CcCCEEEEEe-------CCHHHHHHHHHHHHHhCCCCeEEEEECCHHH-HHHHHHCC
Confidence 5788877643 1233444444555666787777777666543 44445444
No 343
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=88.67 E-value=6.4 Score=34.70 Aligned_cols=64 Identities=22% Similarity=0.391 Sum_probs=41.8
Q ss_pred ceehhhhHHHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhh-----cCCeEEEEeCChhHHHHHHHhc
Q 027388 63 IIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRY 127 (224)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~-----~~~~~~gvD~s~~~~~~a~~~~ 127 (224)
++.++.+...+..++.. ...++..+.|..||+|.++...... ....++|.+....+...++.++
T Consensus 197 ~~Tp~~Iv~l~~~~~~~-~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm 265 (501)
T TIGR00497 197 FFTPQDISELLARIAIG-KKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNM 265 (501)
T ss_pred eeCcHHHHHHHHHHhcc-CCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHH
Confidence 44555554443332211 1124578999999999998764431 1235889999999999998874
No 344
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.75 E-value=11 Score=33.81 Aligned_cols=108 Identities=14% Similarity=0.059 Sum_probs=62.6
Q ss_pred CeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 86 DVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
..++=+|||. .+..+++ .....++.+|.+++.++.+++. ....+++|..+...-. ...
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~----------------g~~~i~GD~~~~~~L~-~a~ 478 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRER----------------GIRAVLGNAANEEIMQ-LAH 478 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC----------------CCeEEEcCCCCHHHHH-hcC
Confidence 4566666665 4444443 3456899999999988888742 2678999987643210 013
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH 220 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g 220 (224)
-+.+|.+++.-. . ++....+-...+...|...++....+. .-.+.+++.|
T Consensus 479 i~~a~~viv~~~------~-~~~~~~iv~~~~~~~~~~~iiar~~~~-~~~~~l~~~G 528 (558)
T PRK10669 479 LDCARWLLLTIP------N-GYEAGEIVASAREKRPDIEIIARAHYD-DEVAYITERG 528 (558)
T ss_pred ccccCEEEEEcC------C-hHHHHHHHHHHHHHCCCCeEEEEECCH-HHHHHHHHcC
Confidence 467886654321 1 222222333345556777777766554 3445556665
No 345
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=87.58 E-value=5.6 Score=32.67 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=31.9
Q ss_pred hhcCCCeEEEecCCC-chhHHHHHhhcCCe-EEEEeCChhHHHHHHHh
Q 027388 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTR 126 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~gvD~s~~~~~~a~~~ 126 (224)
...++.+||=+|+|. |.++..+++....+ +++++.++...+.+++.
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ 207 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL 207 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence 345678888888753 44555566555555 99999999888887653
No 346
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=87.09 E-value=0.55 Score=39.85 Aligned_cols=48 Identities=21% Similarity=0.160 Sum_probs=42.1
Q ss_pred hcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCC
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGD 130 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~ 130 (224)
..+|..|.|+-||-|-++..++... +.|++.|+.+.++++.+.+++-+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lN 294 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLN 294 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhcccc
Confidence 4678899999999999999987555 79999999999999999998743
No 347
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.09 E-value=5.8 Score=27.44 Aligned_cols=87 Identities=14% Similarity=0.018 Sum_probs=55.2
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
...+|+|+|.|-=......+...+..++++|+.+. .+. ..++++.-|+.+=..+ --
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~-----------------~g~~~v~DDitnP~~~----iY 68 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP-----------------EGLRFVVDDITNPNIS----IY 68 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc-----------------ccceEEEccCCCccHH----Hh
Confidence 34599999988644333333344469999999885 221 2367888887643321 13
Q ss_pred CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeE
Q 027388 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT 201 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~ 201 (224)
...|+|.+.. +.+++...+-++.+.++...+
T Consensus 69 ~~A~lIYSiR-------pppEl~~~ildva~aVga~l~ 99 (129)
T COG1255 69 EGADLIYSIR-------PPPELQSAILDVAKAVGAPLY 99 (129)
T ss_pred hCccceeecC-------CCHHHHHHHHHHHHhhCCCEE
Confidence 6788888765 346777777777776665443
No 348
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=86.77 E-value=6.2 Score=31.89 Aligned_cols=121 Identities=15% Similarity=0.018 Sum_probs=79.2
Q ss_pred cCCCeEEEecCCCchhHHHHHh-hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc-ccccccc
Q 027388 83 RRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDKVL 160 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~-~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~ 160 (224)
..++.|+=+| -.--.++.++- .-+.++..||+++..+...++.....+.. ++..+..|+.+ +|. +
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~---------~ie~~~~Dlr~plpe-~-- 217 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN---------NIEAFVFDLRNPLPE-D-- 217 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc---------chhheeehhcccChH-H--
Confidence 3577899998 32223333332 24568999999999999988877633222 37778888764 221 1
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCC---eEEEEEeCCh-----HHHHH-Hhhhcccc
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG---GTFIGTMPDA-----NVIIK-KLREEHFC 222 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~g---G~li~~~~~~-----~~~~~-~~~~~gf~ 222 (224)
-...||+++..-. + +-+....++.+=...|+.- |++.++..+. ..+.+ ++.+.||+
T Consensus 218 -~~~kFDvfiTDPp-e----Ti~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvV 282 (354)
T COG1568 218 -LKRKFDVFITDPP-E----TIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVV 282 (354)
T ss_pred -HHhhCCeeecCch-h----hHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCee
Confidence 2479999986543 2 2266777888777788765 7888886543 35666 66677775
No 349
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=86.47 E-value=9.6 Score=31.10 Aligned_cols=99 Identities=13% Similarity=-0.016 Sum_probs=58.3
Q ss_pred hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec-cccccccc
Q 027388 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHLD 157 (224)
Q Consensus 81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~ 157 (224)
...++.+||=.|+ |.|..+.++++....++++++.++...+.+++.-. ..-+.+... +..+...
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa------------~~vi~~~~~~~~~~~~~- 201 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGF------------DVAFNYKTVKSLEETLK- 201 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC------------CEEEeccccccHHHHHH-
Confidence 3567788887774 45778888877666689999999988888854211 000111110 1111000
Q ss_pred cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.. ..+.+|+|+-.- .. ..+....+.|+++|.++..
T Consensus 202 ~~--~~~gvdvv~d~~-------G~----~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 202 KA--SPDGYDCYFDNV-------GG----EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred Hh--CCCCeEEEEECC-------CH----HHHHHHHHHhCcCcEEEEe
Confidence 00 124689887432 11 1346778899999998853
No 350
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=86.42 E-value=4.1 Score=33.22 Aligned_cols=85 Identities=13% Similarity=0.028 Sum_probs=50.7
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
++.++|=+|||. |.++.++++.... .++++|.++..++.+.... ++ |..+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~------------------~i--~~~~~------- 196 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE------------------VL--DPEKD------- 196 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc------------------cc--Chhhc-------
Confidence 466788888765 5566667665444 4678888887666554311 00 11100
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
....+|+|+-.-. . ...+....+.++++|.+++.
T Consensus 197 ~~~g~Dvvid~~G------~----~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 197 PRRDYRAIYDASG------D----PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred cCCCCCEEEECCC------C----HHHHHHHHHhhhcCcEEEEE
Confidence 1246888874321 1 13456778889999998853
No 351
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=86.36 E-value=4.4 Score=34.77 Aligned_cols=87 Identities=9% Similarity=0.025 Sum_probs=54.6
Q ss_pred cCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..+++|+=+|+|. |......++....+++.+|.++...+.|+..- .... +..+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G----------------~~~~--~~~e-------- 253 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG----------------YEVM--TMEE-------- 253 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC----------------CEEc--cHHH--------
Confidence 3688999999998 55555555555568999999998777776431 1111 1111
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHH-HHHhhccCCeEEEEE
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALA-NVSALLRPGGTFIGT 205 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~-~~~~~lk~gG~li~~ 205 (224)
....+|+|+..-.- ...+. ...+.+++||+++..
T Consensus 254 ~v~~aDVVI~atG~----------~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 254 AVKEGDIFVTTTGN----------KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred HHcCCCEEEECCCC----------HHHHHHHHHhcCCCCcEEEEe
Confidence 12457999864211 12344 358889999998754
No 352
>PLN02740 Alcohol dehydrogenase-like
Probab=86.12 E-value=7 Score=32.90 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=33.5
Q ss_pred hhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHh
Q 027388 81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTR 126 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~ 126 (224)
...++.+||=+|+|. |..+..+++.... .++++|.++..++.+++.
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~ 242 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM 242 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc
Confidence 356788899898864 4455566655544 699999999988888653
No 353
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=86.08 E-value=5 Score=32.14 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=47.1
Q ss_pred hhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
.+.++...+|+|+-.|+++.++.+.. -.|++||--. |.+..- . ...|+....|-..+..
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~-m~V~aVDng~-ma~sL~---d------------tg~v~h~r~DGfk~~P---- 266 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRN-MRVYAVDNGP-MAQSLM---D------------TGQVTHLREDGFKFRP---- 266 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcc-eEEEEeccch-hhhhhh---c------------ccceeeeeccCccccc----
Confidence 45688999999999999999997544 3899999654 222211 1 2235555555444432
Q ss_pred CCCCCeeEEEEccc
Q 027388 161 ADDAPFDICSCQFA 174 (224)
Q Consensus 161 ~~~~~~D~i~~~~~ 174 (224)
.....|-++|..+
T Consensus 267 -~r~~idWmVCDmV 279 (358)
T COG2933 267 -TRSNIDWMVCDMV 279 (358)
T ss_pred -CCCCCceEEeehh
Confidence 2467888887765
No 354
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=85.76 E-value=9.2 Score=31.78 Aligned_cols=100 Identities=15% Similarity=0.052 Sum_probs=59.3
Q ss_pred hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec-cccccccc
Q 027388 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHLD 157 (224)
Q Consensus 81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~ 157 (224)
...++.+||=.|+ |.|.++.++++....++++++.++...+.+++.+.. ..-+.+... ++.+. ..
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa-----------~~vi~~~~~~~~~~~-i~ 222 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF-----------DEAFNYKEEPDLDAA-LK 222 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC-----------CEEEECCCcccHHHH-HH
Confidence 3467888988887 357788888877667899999999888877643320 000111001 11110 00
Q ss_pred cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.. ..+.+|+++-.- .. ..+....+.|+++|.+++.
T Consensus 223 ~~--~~~gvD~v~d~v-------G~----~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 223 RY--FPEGIDIYFDNV-------GG----DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred HH--CCCCcEEEEECC-------CH----HHHHHHHHHhccCCEEEEE
Confidence 00 124689887432 11 2557788889999988753
No 355
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=85.61 E-value=2.3 Score=36.07 Aligned_cols=49 Identities=12% Similarity=0.050 Sum_probs=36.6
Q ss_pred HHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhc
Q 027388 78 VQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY 127 (224)
Q Consensus 78 ~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~ 127 (224)
+.+.+.++++||-|.+|... +..++..++.+|++||+++..+...+=++
T Consensus 29 ~aL~i~~~d~vl~ItSaG~N-~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSAGCN-ALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred HHhCCCCCCeEEEEccCCch-HHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 34566889999999888664 44445578889999999998776655443
No 356
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=85.54 E-value=5.1 Score=33.19 Aligned_cols=100 Identities=19% Similarity=0.146 Sum_probs=61.0
Q ss_pred hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
..+++.+||=.|+ |-|.++.++++.....++++--++...+.+++... +.-+.+...|+.+-....
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGA------------d~vi~y~~~~~~~~v~~~ 206 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGA------------DHVINYREEDFVEQVREL 206 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCC------------CEEEcCCcccHHHHHHHH
Confidence 3466888998885 44678888887655477777777776776666544 111233333332211100
Q ss_pred ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
. ....+|+|+..-.- ..+....+.|+++|.++..
T Consensus 207 t--~g~gvDvv~D~vG~-----------~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 207 T--GGKGVDVVLDTVGG-----------DTFAASLAALAPGGRLVSI 240 (326)
T ss_pred c--CCCCceEEEECCCH-----------HHHHHHHHHhccCCEEEEE
Confidence 0 23479999865422 3556678888999987764
No 357
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.51 E-value=13 Score=31.93 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=55.3
Q ss_pred eEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-ccccCC
Q 027388 87 VVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVLAD 162 (224)
Q Consensus 87 ~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~ 162 (224)
+|+=+|+ |.++..+++ .....++++|.++..++.++.... +.++.+|..+... ... .
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~---------------~~~~~gd~~~~~~l~~~--~ 62 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLD---------------VRTVVGNGSSPDVLREA--G 62 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcC---------------EEEEEeCCCCHHHHHHc--C
Confidence 4566666 556665554 345589999999988877765332 6777888764321 111 2
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
...+|.|++... .++....+....+.+.+.-.+++.+.
T Consensus 63 ~~~a~~vi~~~~-------~~~~n~~~~~~~r~~~~~~~ii~~~~ 100 (453)
T PRK09496 63 AEDADLLIAVTD-------SDETNMVACQIAKSLFGAPTTIARVR 100 (453)
T ss_pred CCcCCEEEEecC-------ChHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 357888776431 13344445555555655555555543
No 358
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=84.73 E-value=11 Score=30.58 Aligned_cols=95 Identities=11% Similarity=-0.001 Sum_probs=57.0
Q ss_pred hcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc--cc
Q 027388 82 ARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LD 157 (224)
Q Consensus 82 ~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~ 157 (224)
..++.+||=.|+ |.|..+..+++....++++++.++...+.+++.-. -.++...-.++. ..
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga---------------~~vi~~~~~~~~~~v~ 205 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGF---------------DAVFNYKTVSLEEALK 205 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC---------------CEEEeCCCccHHHHHH
Confidence 456778887774 45667777777666689999999988888876311 011111101110 00
Q ss_pred cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
.. ....+|+|+-.- .. ..+....+.|+++|.++.
T Consensus 206 ~~--~~~gvd~vld~~-------g~----~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 206 EA--APDGIDCYFDNV-------GG----EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred HH--CCCCcEEEEECC-------CH----HHHHHHHHhhccCCEEEE
Confidence 00 125689887431 11 345777888999998874
No 359
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.70 E-value=8.4 Score=31.42 Aligned_cols=99 Identities=18% Similarity=0.116 Sum_probs=56.2
Q ss_pred hhcCCCeEEEecCCC-chhHHHHHhhcCCe-EEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
...++.+||-+|+|. |..+..+++....+ ++.++.++...+.+++... . .++..+-.......
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~------------~---~~~~~~~~~~~~~~ 220 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA------------T---ETVDPSREDPEAQK 220 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC------------e---EEecCCCCCHHHHH
Confidence 345678898888653 55666666555445 8899999888887754321 0 11111100000000
Q ss_pred ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.. ....+|+++....- ...+....+.|+++|.++..
T Consensus 221 ~~-~~~~vd~v~~~~~~----------~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 221 ED-NPYGFDVVIEATGV----------PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred Hh-cCCCCcEEEECCCC----------hHHHHHHHHHHhcCCEEEEE
Confidence 00 23579999854211 13556677888999988753
No 360
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=84.20 E-value=1.9 Score=37.34 Aligned_cols=113 Identities=19% Similarity=0.131 Sum_probs=68.9
Q ss_pred CCCeEEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc--cccc
Q 027388 84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL--DKVL 160 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~ 160 (224)
.+.++|=+|-|.|.+...+... ....+++|++.+.+++.|.+.+.... ..+.++...|-..+.. ....
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---------~~r~~V~i~dGl~~~~~~~k~~ 365 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---------SDRNKVHIADGLDFLQRTAKSQ 365 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---------hhhhhhhHhhchHHHHHHhhcc
Confidence 4567888999989877765432 44689999999999999999976211 1112222222222111 0111
Q ss_pred CCCCCeeEEEEcc---ccccccCCHH--HHHHHHHHHHhhccCCeEEEEE
Q 027388 161 ADDAPFDICSCQF---AMHYSWSTEA--RARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 161 ~~~~~~D~i~~~~---~l~~~~~~~~--~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.....||+++..- -.|-+-++.. -...++..++..|.|.|.+++.
T Consensus 366 ~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 366 QEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred ccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 1356788887431 0121212222 2356888999999999999986
No 361
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=83.74 E-value=2.5 Score=31.55 Aligned_cols=105 Identities=20% Similarity=0.205 Sum_probs=59.9
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+++|.=+|+|. |......++....+|+++|.+.......... .+...++.++
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~------------------~~~~~~l~el-------- 88 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEF------------------GVEYVSLDEL-------- 88 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHT------------------TEEESSHHHH--------
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccc------------------cceeeehhhh--------
Confidence 688999998876 4444455555677999999999766522211 1122233322
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE----eCChHHHHHHhhhc
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT----MPDANVIIKKLREE 219 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~----~~~~~~~~~~~~~~ 219 (224)
-.+.|+|+....+.- +...-+=++....+|+|.+||-. .-+.+.+.+.+++.
T Consensus 89 l~~aDiv~~~~plt~-----~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g 144 (178)
T PF02826_consen 89 LAQADIVSLHLPLTP-----ETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESG 144 (178)
T ss_dssp HHH-SEEEE-SSSST-----TTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTT
T ss_pred cchhhhhhhhhcccc-----ccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhc
Confidence 246788887665421 00111224577888887766643 33667888887754
No 362
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=83.69 E-value=19 Score=28.98 Aligned_cols=85 Identities=12% Similarity=-0.028 Sum_probs=48.6
Q ss_pred eEEEecCCC--chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCC
Q 027388 87 VVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164 (224)
Q Consensus 87 ~iLDiGcG~--G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 164 (224)
+|.=||+|. |.++..+. ....+|+++|.++..++.+..... +.....+. . ...
T Consensus 2 ~I~IIG~G~mG~sla~~L~-~~g~~V~~~d~~~~~~~~a~~~g~---------------~~~~~~~~---~------~~~ 56 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLR-SLGHTVYGVSRRESTCERAIERGL---------------VDEASTDL---S------LLK 56 (279)
T ss_pred eEEEEeecHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHCCC---------------cccccCCH---h------Hhc
Confidence 355567664 33444443 234589999999988877765321 11111111 0 124
Q ss_pred CeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (224)
Q Consensus 165 ~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li 203 (224)
..|+|+..-. ......++.++...++++.++.
T Consensus 57 ~aDlVilavp-------~~~~~~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 57 DCDLVILALP-------IGLLLPPSEQLIPALPPEAIVT 88 (279)
T ss_pred CCCEEEEcCC-------HHHHHHHHHHHHHhCCCCcEEE
Confidence 6788886543 3445667788888887775543
No 363
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=83.37 E-value=9.5 Score=31.50 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=30.5
Q ss_pred hcCCCeEEEecCCC-chhHHHHHhhcCCe-EEEEeCChhHHHHHHH
Q 027388 82 ARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRT 125 (224)
Q Consensus 82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~gvD~s~~~~~~a~~ 125 (224)
..++.+||=.|+|. |..+..+++....+ +++++.++...+.+++
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 203 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS 203 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 34677888888755 44555565554444 7899999988888754
No 364
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=83.22 E-value=19 Score=29.26 Aligned_cols=96 Identities=18% Similarity=0.075 Sum_probs=56.3
Q ss_pred hhcCCCeEEEecCC-CchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 81 YARRGDVVLDLACG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 81 ~~~~~~~iLDiGcG-~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
...++.+||-.|+| .|..+..+++....++++++.++...+.+++... -.++...-......
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~---------------~~~~~~~~~~~~~~-- 221 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGA---------------DEVVDSGAELDEQA-- 221 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCC---------------cEEeccCCcchHHh--
Confidence 34567788888886 5666666666555689999999988887754211 01111100000000
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
..+.+|+++....- ...+..+.+.|+++|.++..
T Consensus 222 --~~~~~d~vi~~~~~----------~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 222 --AAGGADVILVTVVS----------GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred --ccCCCCEEEECCCc----------HHHHHHHHHhcccCCEEEEE
Confidence 12468888753211 12456678889999988754
No 365
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=83.06 E-value=20 Score=27.83 Aligned_cols=80 Identities=14% Similarity=0.132 Sum_probs=50.3
Q ss_pred cCCCeEEEecCCCch--hHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc
Q 027388 83 RRGDVVLDLACGKGG--DLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~--~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 157 (224)
.+.+.|+++.|+.|. .++.|+. ...++++.|-+.+..+...++.+.. .++...++|+.++..+..+.
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~--------~~~~~~vEfvvg~~~e~~~~ 111 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGE--------AGLSDVVEFVVGEAPEEVMP 111 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhh--------ccccccceEEecCCHHHHHh
Confidence 356789999776543 2333332 3567999999998887777777652 23344468888875332221
Q ss_pred cccCCCCCeeEEEEccc
Q 027388 158 KVLADDAPFDICSCQFA 174 (224)
Q Consensus 158 ~~~~~~~~~D~i~~~~~ 174 (224)
.-..+|.++...-
T Consensus 112 ----~~~~iDF~vVDc~ 124 (218)
T PF07279_consen 112 ----GLKGIDFVVVDCK 124 (218)
T ss_pred ----hccCCCEEEEeCC
Confidence 3467888886543
No 366
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=82.84 E-value=16 Score=29.13 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=49.9
Q ss_pred HHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccc
Q 027388 100 IKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS 178 (224)
Q Consensus 100 ~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~ 178 (224)
..+.+.+ ..+++|+|.++..++.|.+.-. +.-...+... -..+|+|+..-.+
T Consensus 3 ~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~---------------~~~~~~~~~~---------~~~~DlvvlavP~--- 55 (258)
T PF02153_consen 3 LALRKAGPDVEVYGYDRDPETLEAALELGI---------------IDEASTDIEA---------VEDADLVVLAVPV--- 55 (258)
T ss_dssp HHHHHTTTTSEEEEE-SSHHHHHHHHHTTS---------------SSEEESHHHH---------GGCCSEEEE-S-H---
T ss_pred HHHHhCCCCeEEEEEeCCHHHHHHHHHCCC---------------eeeccCCHhH---------hcCCCEEEEcCCH---
Confidence 3343333 4689999999999988865532 1111121111 2457999876533
Q ss_pred cCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhh
Q 027388 179 WSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217 (224)
Q Consensus 179 ~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~ 217 (224)
.....++.++...+++|+++.=...-...+...++
T Consensus 56 ----~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~ 90 (258)
T PF02153_consen 56 ----SAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAME 90 (258)
T ss_dssp ----HHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHH
T ss_pred ----HHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHH
Confidence 56788999999999998877654444444444444
No 367
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=82.73 E-value=7.9 Score=27.27 Aligned_cols=91 Identities=10% Similarity=0.053 Sum_probs=46.7
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
....+|+|+|-|.=.-....+......++++|+.+. .+. ..+.++.-|+.+=.++ -
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~-----------------~g~~~v~DDif~P~l~----i 67 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP-----------------EGVNFVVDDIFNPNLE----I 67 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S------------------------STTEE---SSS--HH----H
T ss_pred CCCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc-----------------cCcceeeecccCCCHH----H
Confidence 455699999999865554444455579999999986 221 1266777777542221 1
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
=...|+|.+...- .++...+.++.+.+. .-+++.+
T Consensus 68 Y~~a~lIYSiRPP-------~El~~~il~lA~~v~--adlii~p 102 (127)
T PF03686_consen 68 YEGADLIYSIRPP-------PELQPPILELAKKVG--ADLIIRP 102 (127)
T ss_dssp HTTEEEEEEES---------TTSHHHHHHHHHHHT---EEEEE-
T ss_pred hcCCcEEEEeCCC-------hHHhHHHHHHHHHhC--CCEEEEC
Confidence 2589999987642 445566666665543 4555553
No 368
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=82.49 E-value=11 Score=31.51 Aligned_cols=39 Identities=18% Similarity=-0.002 Sum_probs=26.5
Q ss_pred cCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHH
Q 027388 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIE 121 (224)
Q Consensus 83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~ 121 (224)
.++.+||=.|+|. |..+..+++....++++++.++....
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~ 221 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKED 221 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhh
Confidence 4677888888864 55666666655667888887765443
No 369
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=82.06 E-value=21 Score=29.10 Aligned_cols=89 Identities=18% Similarity=0.178 Sum_probs=49.3
Q ss_pred CeEEEecCCC-ch-hHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 86 DVVLDLACGK-GG-DLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 86 ~~iLDiGcG~-G~-~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+|.=||+|. |. ++..+...+. ..++++|.++...+.+++.-. . .. ...+..+ .
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~------------~--~~-~~~~~~~--------~ 63 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL------------G--DR-VTTSAAE--------A 63 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC------------C--ce-ecCCHHH--------H
Confidence 5678888876 22 2233322232 379999999987776654211 0 01 1111111 1
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
...+|+|+..-.. .....++..+...+++|+.++.
T Consensus 64 ~~~aDvViiavp~-------~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 64 VKGADLVILCVPV-------GASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred hcCCCEEEECCCH-------HHHHHHHHHHHhhCCCCCEEEe
Confidence 2467888865432 3345667777777888876553
No 370
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=81.86 E-value=3.8 Score=33.32 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=59.1
Q ss_pred EEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHH
Q 027388 112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191 (224)
Q Consensus 112 gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~ 191 (224)
-..+.+...|.+++++. +|.+.++|+.++..-. +.+.+|.++...+-.|+ +......++.+
T Consensus 291 P~yl~~~~YEsir~n~~--------------RV~ihha~~iE~l~~k---~ag~Vdr~iLlDaqdwm--td~qln~lws~ 351 (414)
T COG5379 291 PAYLDEGVYESIRQNLR--------------RVAIHHADIIELLAGK---PAGNVDRYILLDAQDWM--TDGQLNSLWSE 351 (414)
T ss_pred ChhhchhhHHHHHhhhh--------------heeeecccHHHHhccC---CCCCcceEEEecchhhc--ccchHHHHHHH
Confidence 45566666777777655 4888999987764311 46899999999998888 55668999999
Q ss_pred HHhhccCCeEEEEEe
Q 027388 192 VSALLRPGGTFIGTM 206 (224)
Q Consensus 192 ~~~~lk~gG~li~~~ 206 (224)
+.+.+.+|..+|+.+
T Consensus 352 isrta~~gA~VifRt 366 (414)
T COG5379 352 ISRTAEAGARVIFRT 366 (414)
T ss_pred HhhccCCCcEEEEec
Confidence 999999999999864
No 371
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=81.73 E-value=3.1 Score=35.16 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=29.6
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhc
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY 127 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~ 127 (224)
++.+|+=+|+|. |..+...+.....+++.+|.++...+.+...+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~ 210 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF 210 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc
Confidence 456788888874 44555555444558999999987766665443
No 372
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=81.56 E-value=6.7 Score=32.33 Aligned_cols=99 Identities=14% Similarity=0.288 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHhhcCCCe--EEEecCCCchhHHHHHhh-cCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCee
Q 027388 69 LNNWIKSVLVQLYARRGDV--VLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR 145 (224)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~--iLDiGcG~G~~~~~l~~~-~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~ 145 (224)
+..|+..++......++.. =+|||.|..-+-..+... ..-.++++|+....++.|+.++. +.++...++
T Consensus 85 YihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~--------qn~lss~ik 156 (419)
T KOG2912|consen 85 YIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVE--------QNNLSSLIK 156 (419)
T ss_pred hHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhcccc--------cccccccee
Confidence 5566776665442222222 368877664322222111 33467799999999999999988 345566677
Q ss_pred EEeccccccccccccC--CCCCeeEEEEcccc
Q 027388 146 LICGDCYEVHLDKVLA--DDAPFDICSCQFAM 175 (224)
Q Consensus 146 ~~~~d~~~~~~~~~~~--~~~~~D~i~~~~~l 175 (224)
+++.......+.+... ++.-||.+.|+-.+
T Consensus 157 vV~~~~~ktll~d~~~~~~e~~ydFcMcNPPF 188 (419)
T KOG2912|consen 157 VVKVEPQKTLLMDALKEESEIIYDFCMCNPPF 188 (419)
T ss_pred eEEecchhhcchhhhccCccceeeEEecCCch
Confidence 6665433222221111 23458999887543
No 373
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=81.45 E-value=15 Score=29.03 Aligned_cols=46 Identities=24% Similarity=0.138 Sum_probs=32.4
Q ss_pred hhcCCCeEEEecCCC-chhHHHHHhhcCCe-EEEEeCChhHHHHHHHh
Q 027388 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTR 126 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~gvD~s~~~~~~a~~~ 126 (224)
...++.++|=.|+|. |..+..+++....+ +++++.++...+.+++.
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~ 141 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL 141 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc
Confidence 345677888888765 55666666554455 99999999888876654
No 374
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=81.13 E-value=6.6 Score=31.68 Aligned_cols=53 Identities=28% Similarity=0.395 Sum_probs=42.7
Q ss_pred HHHHHHHhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388 74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (224)
Q Consensus 74 ~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~ 128 (224)
.+.+.. ....+..|||.-+|+|..+... ......++|+|+++..++.+.+++.
T Consensus 213 ~r~i~~-~s~~~diVlDpf~GsGtt~~aa-~~~~r~~ig~e~~~~y~~~~~~r~~ 265 (302)
T COG0863 213 ERLIRD-YSFPGDIVLDPFAGSGTTGIAA-KNLGRRFIGIEINPEYVEVALKRLQ 265 (302)
T ss_pred HHHHHh-cCCCCCEEeecCCCCChHHHHH-HHcCCceEEEecCHHHHHHHHHHHH
Confidence 334433 5678899999999999777654 4566789999999999999999986
No 375
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=81.05 E-value=8.1 Score=31.66 Aligned_cols=101 Identities=20% Similarity=0.190 Sum_probs=57.7
Q ss_pred hhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
...++.+||-.|+|. |..+..+++....+++++..++...+.+++... ..-+.....++.+. +...
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~------------~~v~~~~~~~~~~~-l~~~ 222 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGA------------DDTINVGDEDVAAR-LREL 222 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCC------------CEEecCcccCHHHH-HHHH
Confidence 446778888888764 667777776666788888888888877754321 00011111111000 0000
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
. ....+|+++.... . ...+..+.+.|+++|.++..
T Consensus 223 ~-~~~~vd~vld~~g------~----~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 223 T-DGEGADVVIDATG------N----PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred h-CCCCCCEEEECCC------C----HHHHHHHHHHHhcCCEEEEE
Confidence 0 2346899986421 1 12456778888899987743
No 376
>PLN02827 Alcohol dehydrogenase-like
Probab=80.52 E-value=15 Score=30.88 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=31.4
Q ss_pred hcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHh
Q 027388 82 ARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTR 126 (224)
Q Consensus 82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~ 126 (224)
..++.+||=.|+|. |..+.++++.... .++++|.++...+.+++.
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l 237 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF 237 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence 45788999888754 4455555554443 688999999888888543
No 377
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=80.24 E-value=25 Score=28.15 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=47.3
Q ss_pred hhcCCCeEEEecCCCch-------hHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccc
Q 027388 81 YARRGDVVLDLACGKGG-------DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~G~-------~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 153 (224)
..+...+||.+|+|+-- .+.+++ ...+-++-.|+.+ + ..+.-..+.+|...
T Consensus 58 aVP~nMrVlHlGAgSdkGvaPGt~VLrqwl-P~~ailvDnDi~d---------~------------vSDa~~~~~~Dc~t 115 (299)
T PF06460_consen 58 AVPHNMRVLHLGAGSDKGVAPGTAVLRQWL-PEDAILVDNDIRD---------Y------------VSDADQSIVGDCRT 115 (299)
T ss_dssp ---TT-EEEEES---TTSB-HHHHHHHHHS--TT-EEEEEESS-----------------------B-SSSEEEES-GGG
T ss_pred eeccCcEEEEecccccCCcCCchHHHHHhC-CCCcEEEecchhh---------h------------ccccCCceeccccc
Confidence 34678999999998732 122222 1233455566543 1 12224567888877
Q ss_pred cccccccCCCCCeeEEEEccc---cccccC---CHHH-HHHHHHHHHhhccCCeEEEEEeCCh
Q 027388 154 VHLDKVLADDAPFDICSCQFA---MHYSWS---TEAR-ARRALANVSALLRPGGTFIGTMPDA 209 (224)
Q Consensus 154 ~~~~~~~~~~~~~D~i~~~~~---l~~~~~---~~~~-~~~~l~~~~~~lk~gG~li~~~~~~ 209 (224)
+.. +..+|+|++..- ...+.. +.+. ..-+..-+...|+-||.+.+..-+.
T Consensus 116 ~~~------~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~ 172 (299)
T PF06460_consen 116 YMP------PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEH 172 (299)
T ss_dssp EEE------SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SS
T ss_pred cCC------CCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecc
Confidence 764 689999998764 111100 1111 2233455677888999999875443
No 378
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=79.53 E-value=8.1 Score=32.82 Aligned_cols=73 Identities=12% Similarity=0.020 Sum_probs=47.7
Q ss_pred CeEEEecCCC-chhHHHH-HhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-ccccCC
Q 027388 86 DVVLDLACGK-GGDLIKW-DKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVLAD 162 (224)
Q Consensus 86 ~~iLDiGcG~-G~~~~~l-~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~ 162 (224)
.+||=||||. |+..... ++....+|+..|-|...+..+..... .+++....|+.+.+. ...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-------------~~v~~~~vD~~d~~al~~l--- 65 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-------------GKVEALQVDAADVDALVAL--- 65 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-------------ccceeEEecccChHHHHHH---
Confidence 4789999965 3333333 22343799999999887777765542 258888999877632 111
Q ss_pred CCCeeEEEEccc
Q 027388 163 DAPFDICSCQFA 174 (224)
Q Consensus 163 ~~~~D~i~~~~~ 174 (224)
-..+|+|+....
T Consensus 66 i~~~d~VIn~~p 77 (389)
T COG1748 66 IKDFDLVINAAP 77 (389)
T ss_pred HhcCCEEEEeCC
Confidence 256699987654
No 379
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=79.47 E-value=22 Score=29.20 Aligned_cols=94 Identities=10% Similarity=-0.027 Sum_probs=54.3
Q ss_pred CeEEEecC--CCchhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 86 DVVLDLAC--GKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 86 ~~iLDiGc--G~G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+||=.|+ |.|..+.++++.... ++++++.++...+.+++.+.. ..-+.....++.+. .... .
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa-----------~~vi~~~~~~~~~~-i~~~--~ 221 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF-----------DAAINYKTDNVAER-LREL--C 221 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC-----------cEEEECCCCCHHHH-HHHH--C
Confidence 78887775 457777777776665 799999998888877664320 00011111111110 0001 1
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
...+|+|+..-. .. .+....+.|+++|.++.
T Consensus 222 ~~gvd~vid~~g-------~~----~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 222 PEGVDVYFDNVG-------GE----ISDTVISQMNENSHIIL 252 (345)
T ss_pred CCCceEEEECCC-------cH----HHHHHHHHhccCCEEEE
Confidence 257999984321 11 24667788999998875
No 380
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=79.24 E-value=4 Score=33.15 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=36.1
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC-------------hHHHHHHhhhccccc
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD-------------ANVIIKKLREEHFCH 223 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~-------------~~~~~~~~~~~gf~~ 223 (224)
.+.||+|+.....-|++.+ .+..+++|+|.|++.+.- ...+.++..++||.+
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p---------~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p 284 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKP---------ELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKP 284 (289)
T ss_pred cCCCCEEEEhhhhHhhcch---------HHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCcc
Confidence 4789999876654443222 277788999999998752 246667777777764
No 381
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=79.22 E-value=4 Score=29.47 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=23.6
Q ss_pred EecCCCc--hhHHHHHh---hcCCeEEEEeCChhHHHHHHHh
Q 027388 90 DLACGKG--GDLIKWDK---AKIGYYVGIDIAEGSIEDCRTR 126 (224)
Q Consensus 90 DiGcG~G--~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~ 126 (224)
|||+..| .....++. ....+++++|+++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 54444431 2456899999999999988888
No 382
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=79.16 E-value=10 Score=31.06 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=54.0
Q ss_pred hcCCCeEEEecCCC-chhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 82 ARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
..++.+||-.|+|. |..+..+++... ..+++++.++...+.+++.-. ..-+.....++.+. ....
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~------------~~vi~~~~~~~~~~-i~~~ 231 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGA------------TDIINPKNGDIVEQ-ILEL 231 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCC------------cEEEcCCcchHHHH-HHHH
Confidence 35677888877653 556666666544 478888888877776654311 00011111111110 0000
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
. ..+.+|+++.... . ...+....+.|+++|.++.
T Consensus 232 ~-~~~~~d~vld~~g------~----~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 232 T-GGRGVDCVIEAVG------F----EETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred c-CCCCCcEEEEccC------C----HHHHHHHHHHhhcCCEEEE
Confidence 0 2357898875321 1 1356677788899998774
No 383
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.77 E-value=16 Score=29.55 Aligned_cols=105 Identities=13% Similarity=0.039 Sum_probs=58.7
Q ss_pred CeEEEecCCC--chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccccccccc-C--------CCCeeEEecccccc
Q 027388 86 DVVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-F--------SFPARLICGDCYEV 154 (224)
Q Consensus 86 ~~iLDiGcG~--G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~--------~~~v~~~~~d~~~~ 154 (224)
.+|-=||+|+ +.++..++ .....|+.+|.++..++.+.+++... +.+....+ + -.+++ ...|+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~~~~~~~~i~~~-~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~-- 80 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCA-RAGVDVLVFETTEELATAGRNRIEKS-LERAVSRGKLTERERDAALARLR-FTTDLG-- 80 (286)
T ss_pred cEEEEEcccHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHH-HHHHHhcccCChhhHHHHHhCeE-eeCCHH--
Confidence 3677788875 22333333 45568999999999998877664310 00000000 0 00111 112221
Q ss_pred ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhc-cCCeEEEEEeC
Q 027388 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL-RPGGTFIGTMP 207 (224)
Q Consensus 155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~l-k~gG~li~~~~ 207 (224)
.....|+|+-. +.+..+....++..+.+.+ +|+.++.-++.
T Consensus 81 -------~~~~~d~ViEa-----v~E~~~~K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 81 -------DFADRQLVIEA-----VVEDEAVKTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred -------HhCCCCEEEEe-----cccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 12567888744 2334466778889999888 77777766544
No 384
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.66 E-value=25 Score=28.91 Aligned_cols=99 Identities=20% Similarity=0.150 Sum_probs=55.7
Q ss_pred hhcCCCeEEEecCCC-chhHHHHHhhcCCe-EEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc----
Q 027388 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV---- 154 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~---- 154 (224)
...++.+||=.|+|. |..+..+++....+ ++.++.++...+.+++... . .++..+-...
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~------------~---~vi~~~~~~~~~~~ 223 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGA------------T---HTVNVRTEDTPESA 223 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC------------c---EEeccccccchhHH
Confidence 446677887777654 55666666655555 8899888887777754311 0 1111110000
Q ss_pred -ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 155 -HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 155 -~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
...... ....+|+|+-.... ...+....+.|+++|.++..
T Consensus 224 ~~~~~~~-~~~~~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 224 EKIAELL-GGKGPDVVIECTGA----------ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred HHHHHHh-CCCCCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 000000 23569999854221 12556778888999988753
No 385
>PRK13243 glyoxylate reductase; Reviewed
Probab=77.91 E-value=16 Score=30.41 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=59.7
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+++|.=||+|. |......+.....+|+++|.+..... .. ... +. ..++.++
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~-~~~---------------~~--~~~l~el-------- 201 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EK-ELG---------------AE--YRPLEEL-------- 201 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HH-HcC---------------CE--ecCHHHH--------
Confidence 577899998876 54444444445568999998764321 11 100 11 1222221
Q ss_pred CCCeeEEEEccccccccCCHHHHHHH-HHHHHhhccCCeEEEEE----eCChHHHHHHhhhc
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRA-LANVSALLRPGGTFIGT----MPDANVIIKKLREE 219 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~-l~~~~~~lk~gG~li~~----~~~~~~~~~~~~~~ 219 (224)
....|+|+++..+. ++...+ -.+....+|+|.+|+-. .-+...+.+.+++.
T Consensus 202 l~~aDiV~l~lP~t------~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g 257 (333)
T PRK13243 202 LRESDFVSLHVPLT------KETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEG 257 (333)
T ss_pred HhhCCEEEEeCCCC------hHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcC
Confidence 24679998776542 222233 35678888988777743 33667788877654
No 386
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=77.66 E-value=43 Score=28.83 Aligned_cols=72 Identities=13% Similarity=-0.063 Sum_probs=45.3
Q ss_pred CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
...+++=+|+|. ++..+++ .....++.+|.+++.++.++.... .+.++.+|..+...-. .
T Consensus 230 ~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~--------------~~~~i~gd~~~~~~L~-~ 292 (453)
T PRK09496 230 PVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEELP--------------NTLVLHGDGTDQELLE-E 292 (453)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC--------------CCeEEECCCCCHHHHH-h
Confidence 356788787754 4444443 345689999999998888776543 2567888876432100 0
Q ss_pred CCCCCeeEEEEc
Q 027388 161 ADDAPFDICSCQ 172 (224)
Q Consensus 161 ~~~~~~D~i~~~ 172 (224)
.....+|.|++.
T Consensus 293 ~~~~~a~~vi~~ 304 (453)
T PRK09496 293 EGIDEADAFIAL 304 (453)
T ss_pred cCCccCCEEEEC
Confidence 124678888754
No 387
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=77.61 E-value=29 Score=28.85 Aligned_cols=102 Identities=12% Similarity=0.041 Sum_probs=59.2
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+++|.=||+|. |.-....+.....+|++.|.++..... . +. ...++.+ .
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~---~-----------------~~-~~~~l~e--------l 195 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD---F-----------------LT-YKDSVKE--------A 195 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh---h-----------------hh-ccCCHHH--------H
Confidence 456788888877 333333333456689999988642110 0 11 1112211 1
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE----eCChHHHHHHhhhc
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT----MPDANVIIKKLREE 219 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~----~~~~~~~~~~~~~~ 219 (224)
....|+|+....+. ..-...+...+...+++|.+|+-. ..+...+.+.|.+.
T Consensus 196 l~~aDiVil~lP~t-----~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g 251 (330)
T PRK12480 196 IKDADIISLHVPAN-----KESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDG 251 (330)
T ss_pred HhcCCEEEEeCCCc-----HHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcC
Confidence 25679888765442 223444567888889988766643 34677788877743
No 388
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=76.31 E-value=4.2 Score=36.44 Aligned_cols=36 Identities=31% Similarity=0.416 Sum_probs=28.6
Q ss_pred hcCCCeEEEecCCCchhHHHHHhh--cCCeEEEEeCCh
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAE 117 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~--~~~~~~gvD~s~ 117 (224)
+.++..|||+||..|.|+....+. ..+-|+|||+-+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 467889999999999998876653 345688999876
No 389
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=75.90 E-value=17 Score=33.83 Aligned_cols=115 Identities=13% Similarity=0.030 Sum_probs=66.3
Q ss_pred CeEEEecCCC-ch-hHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC--------CCeeEEeccccccc
Q 027388 86 DVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS--------FPARLICGDCYEVH 155 (224)
Q Consensus 86 ~~iLDiGcG~-G~-~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~--------~~v~~~~~d~~~~~ 155 (224)
.+|-=||+|+ |. ++..++ .....|+.+|.+++.++.+.+++...-..-.+...+. .++++ ..|+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~--- 410 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSV-DKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP-TLDYS--- 410 (737)
T ss_pred cEEEEECCCHhHHHHHHHHH-hCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH---
Confidence 4678888876 22 333333 3456899999999999988776542100000000011 11211 11211
Q ss_pred cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHh
Q 027388 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKL 216 (224)
Q Consensus 156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~ 216 (224)
.....|+|+ +-+++..+-..+++.++-.+++|+.+|.-+|.. ...|...+
T Consensus 411 ------~~~~aDlVi-----EAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~ 462 (737)
T TIGR02441 411 ------GFKNADMVI-----EAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVS 462 (737)
T ss_pred ------HhccCCeeh-----hhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhc
Confidence 124677775 333445578899999999999999988876654 34444433
No 390
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.65 E-value=12 Score=30.91 Aligned_cols=106 Identities=15% Similarity=0.052 Sum_probs=58.4
Q ss_pred CeEEEecCCC-ch-hHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC-----CCeeEEecccccccccc
Q 027388 86 DVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-----FPARLICGDCYEVHLDK 158 (224)
Q Consensus 86 ~~iLDiGcG~-G~-~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-----~~v~~~~~d~~~~~~~~ 158 (224)
++|-=||+|+ |. ++..++ .....|+..|.++..++.+...+... .......++. .++.+. .++.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a-~aG~~V~l~D~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~i~~~-~~l~~----- 79 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARAL-AHGLDVVAWDPAPGAEAALRANVANA-WPALERQGLAPGASPARLRFV-ATIEA----- 79 (321)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCChhhHHhhceec-CCHHH-----
Confidence 5677888874 22 333333 45569999999998887765543310 0000000000 111111 11110
Q ss_pred ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
.....|+|+-+ +.+..+-...++.++.+.++|+.+|.-+|.
T Consensus 80 ---av~~aDlViEa-----vpE~l~vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 80 ---CVADADFIQES-----APEREALKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred ---HhcCCCEEEEC-----CcCCHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 12567888754 223446678889999999999885555544
No 391
>PLN02494 adenosylhomocysteinase
Probab=75.57 E-value=15 Score=32.13 Aligned_cols=88 Identities=11% Similarity=-0.019 Sum_probs=52.9
Q ss_pred cCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..+++|+=+|+|. |......+.....+|+++|.++.....+...- ..+ .++.+.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G----------------~~v--v~leEa------- 306 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG----------------YQV--LTLEDV------- 306 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC----------------Cee--ccHHHH-------
Confidence 3688999999997 44444444445568999999886544443221 111 122111
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
....|+|++.-.-. .-+.......+|+||+|+..
T Consensus 307 -l~~ADVVI~tTGt~---------~vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 307 -VSEADIFVTTTGNK---------DIIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred -HhhCCEEEECCCCc---------cchHHHHHhcCCCCCEEEEc
Confidence 13579888632211 12346788899999998865
No 392
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=75.48 E-value=33 Score=28.10 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=58.8
Q ss_pred hhcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEec-cccccccc
Q 027388 81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHLD 157 (224)
Q Consensus 81 ~~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~ 157 (224)
...++.+||=.|+ |.|..+.++++....++++++.++...+.+++.+.. ..-+.+... +..+. ..
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa-----------~~vi~~~~~~~~~~~-i~ 215 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF-----------DDAFNYKEEPDLDAA-LK 215 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC-----------ceeEEcCCcccHHHH-HH
Confidence 3467888888886 457777778776666899999998888888763320 000111111 11110 00
Q ss_pred cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
.. ....+|+|+-.- .. ..+....+.|+++|.++.
T Consensus 216 ~~--~~~gvd~v~d~~-------g~----~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 216 RY--FPNGIDIYFDNV-------GG----KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred Hh--CCCCcEEEEECC-------CH----HHHHHHHHHhccCcEEEE
Confidence 01 125789887431 11 346678888999998875
No 393
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=75.29 E-value=39 Score=27.39 Aligned_cols=106 Identities=10% Similarity=0.014 Sum_probs=60.7
Q ss_pred CeEEEecCCC--chhHHHHHhhc-CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 86 DVVLDLACGK--GGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 86 ~~iLDiGcG~--G~~~~~l~~~~-~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+|+=+|.|- |.++..+...+ ...++|.|.+...++.+...-. .....+.... . .
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv----------------~d~~~~~~~~-~-----~ 61 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGV----------------IDELTVAGLA-E-----A 61 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCc----------------ccccccchhh-h-----h
Confidence 3556666554 33444443333 3357899999877777754321 1111110000 1 2
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH 220 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g 220 (224)
....|+|+.+-.+ .....+++++...|++|..+.=.+.-...+.+.+++.+
T Consensus 62 ~~~aD~VivavPi-------~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 62 AAEADLVIVAVPI-------EATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL 112 (279)
T ss_pred cccCCEEEEeccH-------HHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence 4568999876433 55678889999899998877755545555566655543
No 394
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=74.96 E-value=33 Score=28.63 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=30.4
Q ss_pred hcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHH
Q 027388 82 ARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRT 125 (224)
Q Consensus 82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~ 125 (224)
..++.+||=.|+|. |..+..+++.... .+++++.++...+.+++
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~ 229 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE 229 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 45677888777654 5555556554444 69999999988877754
No 395
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=74.89 E-value=24 Score=26.07 Aligned_cols=61 Identities=21% Similarity=0.177 Sum_probs=38.2
Q ss_pred EeccccccccccccCCCCCeeEEEEcccccc---------ccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHY---------SWSTEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 147 ~~~d~~~~~~~~~~~~~~~~D~i~~~~~l~~---------~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
...|+..+.... ......||.|+.++.--- +-....-+..++..+..+|+++|.+.++..+
T Consensus 58 ~~VDat~l~~~~-~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 58 HGVDATKLHKHF-RLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred cCCCCCcccccc-cccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 344665554321 114588999997764211 0001234577899999999999999998554
No 396
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=74.67 E-value=10 Score=30.99 Aligned_cols=48 Identities=13% Similarity=0.096 Sum_probs=36.3
Q ss_pred HhhcCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388 80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (224)
Q Consensus 80 ~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~ 128 (224)
+....+.+|+-||+|...++..+ ...+.++.+||+++.-+...+-++.
T Consensus 59 m~~g~ghrivtigSGGcn~L~yl-sr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 59 MQLGIGHRIVTIGSGGCNMLAYL-SRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred HhcCCCcEEEEecCCcchHHHHh-hcCCceeEEEeCCHHHHHHHHHHHH
Confidence 34578899999999976555544 4677899999999988776555544
No 397
>PRK07574 formate dehydrogenase; Provisional
Probab=74.63 E-value=24 Score=30.05 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=60.6
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+++|.=||.|. |......+.....+++++|.+....+..+ .. .+.+ ..++.++
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-~~---------------g~~~-~~~l~el-------- 245 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-EL---------------GLTY-HVSFDSL-------- 245 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-hc---------------Ccee-cCCHHHH--------
Confidence 456777888775 54444444455668999998763222211 10 1221 1222221
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHH-HHHHhhccCCeEEEEE----eCChHHHHHHhhhc
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRAL-ANVSALLRPGGTFIGT----MPDANVIIKKLREE 219 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l-~~~~~~lk~gG~li~~----~~~~~~~~~~~~~~ 219 (224)
....|+|+.+..+. ++...++ .+....||+|.+||-. ..+.+.+.+.|+..
T Consensus 246 l~~aDvV~l~lPlt------~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 301 (385)
T PRK07574 246 VSVCDVVTIHCPLH------PETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESG 301 (385)
T ss_pred hhcCCEEEEcCCCC------HHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhC
Confidence 25679998877654 3333444 4688889998766643 33677888887754
No 398
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.17 E-value=18 Score=29.81 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=54.8
Q ss_pred hhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
...++.+||=.|+|. |..+..+++.... .++++|.++...+.+++.-. ..-+.....+.... ...
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~------------~~~v~~~~~~~~~~-i~~ 229 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGA------------TDIVDYKNGDVVEQ-ILK 229 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC------------ceEecCCCCCHHHH-HHH
Confidence 345677888887653 4455555554444 68899999988877765311 00011111111000 000
Q ss_pred ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
.. ....+|+++..-. . ...+..+.+.|+++|.++.
T Consensus 230 ~~-~~~~~d~vld~~g------~----~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 230 LT-GGKGVDAVIIAGG------G----QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred Hh-CCCCCcEEEECCC------C----HHHHHHHHHHhhcCCEEEE
Confidence 00 2356898874321 1 1356778888999998774
No 399
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=73.93 E-value=18 Score=29.64 Aligned_cols=97 Identities=21% Similarity=0.251 Sum_probs=54.9
Q ss_pred hhcCCCeEEEecCCC-chhHHHHHhhcCCe-EEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecc---ccccc
Q 027388 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD---CYEVH 155 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d---~~~~~ 155 (224)
...++.+||-.|+|. |..+..+++..... +++++.++...+.+++... ..++... ...+.
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~---------------~~~~~~~~~~~~~~~ 220 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGA---------------DDTINPKEEDVEKVR 220 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC---------------CEEecCccccHHHHH
Confidence 345677888888755 55666666555555 8899988887777643211 1111111 11110
Q ss_pred cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
... ....+|+++.... . ...+..+.+.|+++|.++..
T Consensus 221 --~~~-~~~~~d~vld~~g------~----~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 221 --ELT-EGRGADLVIEAAG------S----PATIEQALALARPGGKVVLV 257 (343)
T ss_pred --HHh-CCCCCCEEEECCC------C----HHHHHHHHHHhhcCCEEEEE
Confidence 000 2345899985421 1 12456678888899987754
No 400
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=73.91 E-value=48 Score=27.10 Aligned_cols=109 Identities=10% Similarity=-0.038 Sum_probs=57.8
Q ss_pred CeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHh--ccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 86 DVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTR--YNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 86 ~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+|+=+|+|. |.+....+......|+.++-+...++..++. +. .........+ ..... .+. .
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~--------i~~~g~~~~~-~~~~~-~~~-----~ 67 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLT--------LVEQGQASLY-AIPAE-TAD-----A 67 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeE--------EeeCCcceee-ccCCC-Ccc-----c
Confidence 4688889886 4443333334456899999987666555432 11 0000110111 11000 010 2
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE---eCChHHHHHHh
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT---MPDANVIIKKL 216 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~---~~~~~~~~~~~ 216 (224)
.+.||+|+..- ...+...++..+...+.++..++.- ..+.+.+...+
T Consensus 68 ~~~~D~viv~v-------K~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~ 117 (305)
T PRK05708 68 AEPIHRLLLAC-------KAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARV 117 (305)
T ss_pred ccccCEEEEEC-------CHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhC
Confidence 35899887542 2345667888899999998865543 22334444444
No 401
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=73.54 E-value=38 Score=28.16 Aligned_cols=44 Identities=20% Similarity=0.009 Sum_probs=28.6
Q ss_pred cCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHh
Q 027388 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTR 126 (224)
Q Consensus 83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~ 126 (224)
.++.++|=.|+|. |..+..+++....+++.++.++...+.+.+.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~ 223 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH 223 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh
Confidence 4567777777644 5555666665556788888887666555443
No 402
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=73.52 E-value=18 Score=30.54 Aligned_cols=42 Identities=19% Similarity=-0.033 Sum_probs=27.7
Q ss_pred cCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhH-HHHHH
Q 027388 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGS-IEDCR 124 (224)
Q Consensus 83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~-~~~a~ 124 (224)
.++.+||=.|+|. |..+..+++....++++++.++.. .+.++
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~ 220 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID 220 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH
Confidence 3677888888754 555566666556678888877544 44443
No 403
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=73.36 E-value=6.6 Score=34.11 Aligned_cols=90 Identities=13% Similarity=0.113 Sum_probs=52.8
Q ss_pred cCCCeEEEecCCCchhHHHHH-hhcCCeEE------EEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc
Q 027388 83 RRGDVVLDLACGKGGDLIKWD-KAKIGYYV------GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~-~~~~~~~~------gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 155 (224)
..+++|+=||||+=..+..+. +.....++ ++|..+...+.|... + . ...++.+
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~d--------------G--F--~v~~~~E-- 93 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATEN--------------G--F--KVGTYEE-- 93 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhc--------------C--C--ccCCHHH--
Confidence 478999999999833322211 11223444 445445556555433 1 1 1122211
Q ss_pred cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.....|+|++... ......+..++...||+|..|.++
T Consensus 94 ------a~~~ADvVviLlP-------Dt~q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 94 ------LIPQADLVINLTP-------DKQHSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred ------HHHhCCEEEEcCC-------hHHHHHHHHHHHhhCCCCCEEEec
Confidence 1357899986542 234666779999999999999986
No 404
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=73.16 E-value=16 Score=30.03 Aligned_cols=103 Identities=8% Similarity=-0.089 Sum_probs=59.1
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+++|.=+|.|. |.-....+.....+++++|.+..... .+ ..+. ....+.. .
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~----~~----------------~~~~--~~~~l~e-----~ 187 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWP----GV----------------QSFA--GREELSA-----F 187 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCC----Cc----------------eeec--ccccHHH-----H
Confidence 567888888875 54444444455568999997652110 00 0111 1111111 1
Q ss_pred CCCeeEEEEccccccccCCHHHHHHH-HHHHHhhccCCeEEEEE----eCChHHHHHHhhhc
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRA-LANVSALLRPGGTFIGT----MPDANVIIKKLREE 219 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~-l~~~~~~lk~gG~li~~----~~~~~~~~~~~~~~ 219 (224)
....|+|++...+. +....+ -......||+|.+|+-. .-+.+.+.+.|++.
T Consensus 188 l~~aDvvv~~lPlt------~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g 243 (312)
T PRK15469 188 LSQTRVLINLLPNT------PETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSG 243 (312)
T ss_pred HhcCCEEEECCCCC------HHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcC
Confidence 35679998776553 233333 35688889998766643 44678888888764
No 405
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=73.12 E-value=23 Score=30.33 Aligned_cols=87 Identities=10% Similarity=0.038 Sum_probs=51.9
Q ss_pred cCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
..+++|+=+|+|. |......++....+|+++|.++.....+... + ..+ .++.+.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~--------------G--~~v--~~leea------- 247 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD--------------G--FRV--MTMEEA------- 247 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc--------------C--CEe--CCHHHH-------
Confidence 4688999999998 5455555555566899999888554333321 1 111 122111
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHH-HHHhhccCCeEEEEE
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALA-NVSALLRPGGTFIGT 205 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~-~~~~~lk~gG~li~~ 205 (224)
....|+|++.-. ...++. .....+|+|++++..
T Consensus 248 -l~~aDVVItaTG----------~~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 248 -AKIGDIFITATG----------NKDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred -HhcCCEEEECCC----------CHHHHHHHHHhcCCCCcEEEEE
Confidence 135688876321 123343 477889999988864
No 406
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=73.04 E-value=29 Score=28.51 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=26.5
Q ss_pred CCCeEEEecCCC-chhHHHHHhh-cCCeEEEEeCChhHHHHH
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDC 123 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~-~~~~~~gvD~s~~~~~~a 123 (224)
.+.+|+=+|+|. |..+...+.. +...++.++.++...+..
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~l 218 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEEL 218 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 678999999965 4333333333 456899999998655433
No 407
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=72.95 E-value=23 Score=28.96 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=30.8
Q ss_pred hhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHH
Q 027388 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~ 125 (224)
....+.+||=.|+|. |..+..+++....+++.++.++...+.+++
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~ 205 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK 205 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 445677888888543 445555555555579999999888888754
No 408
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=72.41 E-value=8.4 Score=31.40 Aligned_cols=82 Identities=12% Similarity=0.018 Sum_probs=42.3
Q ss_pred CCCchhHHHHHh----hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCeeE
Q 027388 93 CGKGGDLIKWDK----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDI 168 (224)
Q Consensus 93 cG~G~~~~~l~~----~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D~ 168 (224)
.|+|.++..+.+ ..+.+++.+|.++..+-..++.+..... ...+...+..+.+|+.+...-........+|+
T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~----~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFP----DPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC------TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhccc----ccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 466777776664 3567899999999999888888731000 00111122345888876543222224568999
Q ss_pred EEEccccccc
Q 027388 169 CSCQFAMHYS 178 (224)
Q Consensus 169 i~~~~~l~~~ 178 (224)
|+-..++-|+
T Consensus 81 VfHaAA~KhV 90 (293)
T PF02719_consen 81 VFHAAALKHV 90 (293)
T ss_dssp EEE------H
T ss_pred EEEChhcCCC
Confidence 9988877776
No 409
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=72.32 E-value=21 Score=29.45 Aligned_cols=101 Identities=20% Similarity=0.090 Sum_probs=54.1
Q ss_pred hhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
...++.+||=.|+|. |..+.++++.... .+++++.++...+.+++.-. ..-+.....++.+. +..
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga------------~~~i~~~~~~~~~~-l~~ 235 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGA------------TIVLDPTEVDVVAE-VRK 235 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC------------CEEECCCccCHHHH-HHH
Confidence 345677777777542 4455555555444 78999999988887754311 00001111111100 000
Q ss_pred ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.. ....+|+++-.... ...+....+.|+++|.++..
T Consensus 236 ~~-~~~~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 236 LT-GGGGVDVSFDCAGV----------QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred Hh-CCCCCCEEEECCCC----------HHHHHHHHHhccCCCEEEEE
Confidence 00 23458999854211 12456778889999987753
No 410
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=72.04 E-value=23 Score=28.84 Aligned_cols=87 Identities=17% Similarity=0.067 Sum_probs=49.7
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+.+++=+|+|. |..+...+.....+++.+|.++...+.++.. + .++.. ..++.. .
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~--------------G--~~~~~--~~~l~~-----~ 207 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEM--------------G--LSPFH--LSELAE-----E 207 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc--------------C--Ceeec--HHHHHH-----H
Confidence 578999999876 3333333334456899999997665555432 1 12211 111111 1
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li 203 (224)
...+|+|+..-... -+-++..+.+++|++++
T Consensus 208 l~~aDiVI~t~p~~----------~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 208 VGKIDIIFNTIPAL----------VLTKEVLSKMPPEALII 238 (296)
T ss_pred hCCCCEEEECCChh----------hhhHHHHHcCCCCcEEE
Confidence 35799998752111 12345667788888776
No 411
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=71.77 E-value=6.5 Score=31.02 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=30.1
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhc
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY 127 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~ 127 (224)
+..+++|+-||+|..+..+.. ....++.-|+....+...+..+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHHHH
Confidence 678999999999988877643 5668999999998776666333
No 412
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=71.62 E-value=52 Score=26.57 Aligned_cols=91 Identities=19% Similarity=0.077 Sum_probs=53.5
Q ss_pred hhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
...++.+||=.|+|. |..+..+++....+++.++.++...+.+++ +. +.. ..+.... .
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g---------------~~~-~~~~~~~-~--- 210 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LG---------------VET-VLPDEAE-S--- 210 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cC---------------CcE-EeCcccc-c---
Confidence 345677888777543 334444554555578999999988888876 22 110 0011111 1
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
....+|+++.... . ...+....+.|+++|.++.
T Consensus 211 --~~~~~d~vid~~g------~----~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 211 --EGGGFDVVVEATG------S----PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred --cCCCCCEEEECCC------C----hHHHHHHHHHhhcCCEEEE
Confidence 2456898885421 1 1245666778889998875
No 413
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=71.27 E-value=58 Score=26.94 Aligned_cols=42 Identities=24% Similarity=0.170 Sum_probs=28.1
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHH
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRT 125 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~ 125 (224)
++.+||=.|+|. |..+..+++.... ++++++.++...+.+++
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~ 220 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE 220 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 566777777643 4445555555555 89999988887777653
No 414
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=71.27 E-value=18 Score=23.45 Aligned_cols=82 Identities=11% Similarity=0.041 Sum_probs=45.1
Q ss_pred EEecCCCchhHHHHHhh---cC---CeEE-EEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 89 LDLACGKGGDLIKWDKA---KI---GYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 89 LDiGcG~G~~~~~l~~~---~~---~~~~-gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
.=||+| .++..++.. .. .+++ +.+.+++..+...+... +.+...+..+.
T Consensus 3 ~iIG~G--~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~---------------~~~~~~~~~~~------- 58 (96)
T PF03807_consen 3 GIIGAG--NMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG---------------VQATADDNEEA------- 58 (96)
T ss_dssp EEESTS--HHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT---------------TEEESEEHHHH-------
T ss_pred EEECCC--HHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc---------------cccccCChHHh-------
Confidence 335544 455544432 22 5777 55999988888877654 33333232222
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li 203 (224)
....|+|+..--. .....++..+ ..+.++..++
T Consensus 59 -~~~advvilav~p-------~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 59 -AQEADVVILAVKP-------QQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp -HHHTSEEEE-S-G-------GGHHHHHHHH-HHHHTTSEEE
T ss_pred -hccCCEEEEEECH-------HHHHHHHHHH-hhccCCCEEE
Confidence 1356888865433 4456677777 5555554443
No 415
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=71.26 E-value=15 Score=35.82 Aligned_cols=101 Identities=13% Similarity=0.068 Sum_probs=58.3
Q ss_pred CCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
.+..+||+|+|.--=...++ ..-.-++.||.-+.. . ....+...-.|+++|....... -.
T Consensus 822 ~~~~~lDLGTGPE~RiLsli-P~~~pvtmvD~RP~a--------e-------~m~~w~t~T~y~~~DYl~~~~~----~~ 881 (1289)
T PF06016_consen 822 DPDHWLDLGTGPECRILSLI-PPDTPVTMVDTRPFA--------E-------PMNCWNTQTQYIQADYLSDAWW----NG 881 (1289)
T ss_dssp CC-CEEEET--TT-CHHHCS--TTSEEEEEESS--S--------S-------SCCCCSTTEEEEES-TTSCCGG----CC
T ss_pred CcceEEEccCCccceeeecc-CCCCceEEEecCCcc--------c-------ccchhhhcceeeeeccccceeE----ec
Confidence 46889999999976555554 334479999987621 1 0123344467999998765542 35
Q ss_pred CCeeEEEEcccccccc-CCHHHHHHHHHHHHhhccCCeE--EEE
Q 027388 164 APFDICSCQFAMHYSW-STEARARRALANVSALLRPGGT--FIG 204 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~-~~~~~~~~~l~~~~~~lk~gG~--li~ 204 (224)
.++|.+.|.+.|.-.- +..-.+.+.++.+.+.++..|+ +++
T Consensus 882 ~~~D~vtailSLGAAaA~a~~tl~~~l~~~l~~~~~~~~~~l~l 925 (1289)
T PF06016_consen 882 TPFDAVTAILSLGAAAASANVTLDAGLQQFLSQCVQANVKRLWL 925 (1289)
T ss_dssp ---SEEEECTCHHHHHHHCT--HHHHHHHHHHHHHCTT-SEEEE
T ss_pred CCCCEEEEEeeehhhhhcCCCcHHHHHHHHHHHHHhCCccEEEE
Confidence 7899999998765320 1223578888899998888764 554
No 416
>PRK06701 short chain dehydrogenase; Provisional
Probab=71.15 E-value=50 Score=26.54 Aligned_cols=79 Identities=16% Similarity=0.092 Sum_probs=42.3
Q ss_pred CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChh-HHHHHHHhccCCcccccccccCCCCeeEEeccccccccc-c
Q 027388 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEG-SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-K 158 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~-~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 158 (224)
+++++|=.|++.| ++..++. ....+++.++.+.. ..+.....+. ....++.++.+|+.+...- .
T Consensus 45 ~~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~----------~~~~~~~~~~~Dl~~~~~~~~ 113 (290)
T PRK06701 45 KGKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVE----------KEGVKCLLIPGDVSDEAFCKD 113 (290)
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHH----------hcCCeEEEEEccCCCHHHHHH
Confidence 4678888887655 5554443 24457888877642 2333333322 1123477888888653310 0
Q ss_pred cc----CCCCCeeEEEEcc
Q 027388 159 VL----ADDAPFDICSCQF 173 (224)
Q Consensus 159 ~~----~~~~~~D~i~~~~ 173 (224)
.. ...+.+|+++.+.
T Consensus 114 ~~~~i~~~~~~iD~lI~~A 132 (290)
T PRK06701 114 AVEETVRELGRLDILVNNA 132 (290)
T ss_pred HHHHHHHHcCCCCEEEECC
Confidence 00 0124688888554
No 417
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=70.51 E-value=25 Score=28.41 Aligned_cols=115 Identities=11% Similarity=0.045 Sum_probs=59.2
Q ss_pred CeEEEecCCC-ch-hHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcc--ccc-ccccC--------CCCeeEEecccc
Q 027388 86 DVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDAD--HHQ-RRKKF--------SFPARLICGDCY 152 (224)
Q Consensus 86 ~~iLDiGcG~-G~-~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~--~~~-~~~~~--------~~~v~~~~~d~~ 152 (224)
.+|.=||+|. |. ++..++ .....|+.+|.++..++.+.+.+....+ ... +.... ..++.+ ..+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFA-RTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCHH
Confidence 4577788875 32 333333 3445899999999999877654431000 000 00000 001111 11110
Q ss_pred ccccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC--ChHHHHHHh
Q 027388 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP--DANVIIKKL 216 (224)
Q Consensus 153 ~~~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~--~~~~~~~~~ 216 (224)
.....|+|+..-. +..+....+++++...++++.+++-++. ....+...+
T Consensus 82 ---------~~~~aDlVieav~-----e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~ 133 (291)
T PRK06035 82 ---------SLSDADFIVEAVP-----EKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATAL 133 (291)
T ss_pred ---------HhCCCCEEEEcCc-----CcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhc
Confidence 1245788875431 2234567788889998888877654433 234444444
No 418
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.86 E-value=18 Score=29.20 Aligned_cols=116 Identities=11% Similarity=0.029 Sum_probs=59.3
Q ss_pred eEEEecCCC-c-hhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC--------CCeeEEecccccccc
Q 027388 87 VVLDLACGK-G-GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS--------FPARLICGDCYEVHL 156 (224)
Q Consensus 87 ~iLDiGcG~-G-~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~--------~~v~~~~~d~~~~~~ 156 (224)
+|.=||+|. | .++..++ .....|+.+|.++..++.+.++.........+...+. .+++ ...+..+
T Consensus 3 ~V~VIG~G~mG~~iA~~la-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~--- 77 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFA-VSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLDLKA--- 77 (288)
T ss_pred EEEEECccHHHHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCcHHH---
Confidence 466677764 2 2333333 3445899999999999887765321000000000000 0111 1112111
Q ss_pred ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC--ChHHHHHHhh
Q 027388 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP--DANVIIKKLR 217 (224)
Q Consensus 157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~--~~~~~~~~~~ 217 (224)
.....|+|+..-. +.......++.++.+.++++.++...+. ....+.+.+.
T Consensus 78 -----~~~~aD~Vi~avp-----e~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~ 130 (288)
T PRK09260 78 -----AVADADLVIEAVP-----EKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTK 130 (288)
T ss_pred -----hhcCCCEEEEecc-----CCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcC
Confidence 1356788885432 1234456778888889999887765543 3445544443
No 419
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=69.78 E-value=22 Score=31.79 Aligned_cols=88 Identities=14% Similarity=-0.011 Sum_probs=61.3
Q ss_pred CCCeEEEecCCCchhHHHHHh----hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 84 RGDVVLDLACGKGGDLIKWDK----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~----~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
.+++||=-| |+|.++..+.+ .++.+++.+|.++..+....+.+... -....+.++.+|+.+...-..
T Consensus 249 ~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~--------~~~~~~~~~igdVrD~~~~~~ 319 (588)
T COG1086 249 TGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK--------FPELKLRFYIGDVRDRDRVER 319 (588)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh--------CCCcceEEEecccccHHHHHH
Confidence 567777665 45777776654 37789999999999998888877621 113557899999987543221
Q ss_pred cCCCCCeeEEEEccccccccC
Q 027388 160 LADDAPFDICSCQFAMHYSWS 180 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~ 180 (224)
....-+.|+|+-..++-|++-
T Consensus 320 ~~~~~kvd~VfHAAA~KHVPl 340 (588)
T COG1086 320 AMEGHKVDIVFHAAALKHVPL 340 (588)
T ss_pred HHhcCCCceEEEhhhhccCcc
Confidence 114457999998888888743
No 420
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.63 E-value=31 Score=27.86 Aligned_cols=105 Identities=14% Similarity=0.012 Sum_probs=55.0
Q ss_pred CeEEEecCCCch--hHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC---------CCeeEEecccccc
Q 027388 86 DVVLDLACGKGG--DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS---------FPARLICGDCYEV 154 (224)
Q Consensus 86 ~~iLDiGcG~G~--~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~---------~~v~~~~~d~~~~ 154 (224)
.+|.=||+|.=+ ++..++ .....|+++|.++..++.+++.+........+...+. .++++ ..|+.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~- 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTA-FHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE- 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH-
Confidence 356777887522 222222 3455899999999988888765321000000000000 11111 122211
Q ss_pred ccccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 155 ~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.....|+|+..-. + ..+-...++.++...++++.++...
T Consensus 81 -------a~~~aDlVieavp-e----~~~~k~~~~~~l~~~~~~~~ii~sn 119 (287)
T PRK08293 81 -------AVKDADLVIEAVP-E----DPEIKGDFYEELAKVAPEKTIFATN 119 (287)
T ss_pred -------HhcCCCEEEEecc-C----CHHHHHHHHHHHHhhCCCCCEEEEC
Confidence 1246788876532 1 2345677888888888887766544
No 421
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=69.62 E-value=27 Score=24.91 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=27.3
Q ss_pred cCCCeEEEecCCCchhHHHHHh---h-cCCeEEEEeCChhHHHHHHHhc
Q 027388 83 RRGDVVLDLACGKGGDLIKWDK---A-KIGYYVGIDIAEGSIEDCRTRY 127 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~---~-~~~~~~gvD~s~~~~~~a~~~~ 127 (224)
..+.+|+=+|||. .+..++. . +...++.+|.+....+...+.+
T Consensus 17 ~~~~~i~iiG~G~--~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~ 63 (155)
T cd01065 17 LKGKKVLILGAGG--AARAVAYALAELGAAKIVIVNRTLEKAKALAERF 63 (155)
T ss_pred CCCCEEEEECCcH--HHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence 3567899999863 3333322 2 3457899999887666554443
No 422
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=69.54 E-value=14 Score=27.72 Aligned_cols=44 Identities=7% Similarity=0.070 Sum_probs=29.6
Q ss_pred CCCCeeEEEEccccccccC----CHHH----HHHHHHHHHhhccCCeEEEEE
Q 027388 162 DDAPFDICSCQFAMHYSWS----TEAR----ARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~----~~~~----~~~~l~~~~~~lk~gG~li~~ 205 (224)
..+..|+|+.+++++-+-- +.++ ++.++..+..+|+++..+|..
T Consensus 47 ~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~ 98 (183)
T cd01842 47 EGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWN 98 (183)
T ss_pred cCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEe
Confidence 4678899999998775521 3333 455666666666688877765
No 423
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=69.53 E-value=25 Score=30.42 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=50.9
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+++|+=+|+|. |......+.....+|+.+|.++.....+... + ..+ .++.+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~--------------G--~~v--~~l~ea-------- 264 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD--------------G--FRV--MTMEEA-------- 264 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc--------------C--CEe--cCHHHH--------
Confidence 688999999986 3344444444556899999988654433221 1 111 122111
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHH-HHHhhccCCeEEEEE
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALA-NVSALLRPGGTFIGT 205 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~-~~~~~lk~gG~li~~ 205 (224)
...+|+|+..-. ...++. .....+|+|++++..
T Consensus 265 l~~aDVVI~aTG----------~~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 265 AELGDIFVTATG----------NKDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred HhCCCEEEECCC----------CHHHHHHHHHhcCCCCCEEEEc
Confidence 246899976421 112343 678889999987754
No 424
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=69.26 E-value=64 Score=26.66 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhcCCCeEEEecCCCchhHHHHHhhc---CCeEEEEeCChhHHHHH
Q 027388 71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK---IGYYVGIDIAEGSIEDC 123 (224)
Q Consensus 71 ~~~~~~~~~~~~~~~~~iLDiGcG~G~~~~~l~~~~---~~~~~gvD~s~~~~~~a 123 (224)
..+..++.+ ......|+.+|||.-.+...+.... ...++=||.+......+
T Consensus 76 ~~v~~Fl~~--~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 76 HAVRAFLEQ--TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred HHHHHHHHh--cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence 334444433 3556789999999998888876543 34677888887666555
No 425
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=69.04 E-value=11 Score=30.72 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhccCCeEEEEEeCCh--HHHHHHh
Q 027388 183 ARARRALANVSALLRPGGTFIGTMPDA--NVIIKKL 216 (224)
Q Consensus 183 ~~~~~~l~~~~~~lk~gG~li~~~~~~--~~~~~~~ 216 (224)
..+..+|....++|+|||+|++.+.+. +.|.+.+
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFHSLEDRiVK~f 256 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFHSLEDRIVKNF 256 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEecchHHHHHHHH
Confidence 567889999999999999999887764 5565544
No 426
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=68.98 E-value=32 Score=30.61 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=60.0
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+++|.=+|.|. |......+.....+++++|.+... +.+. .. .+.+. ++.++
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-~~---------------g~~~~--~l~el-------- 191 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-QL---------------GVELV--SLDEL-------- 191 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-hc---------------CCEEE--cHHHH--------
Confidence 577888888876 443333333455689999986421 1111 10 12222 32222
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHH-HHHHhhccCCeEEEEE----eCChHHHHHHhhhc
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRAL-ANVSALLRPGGTFIGT----MPDANVIIKKLREE 219 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l-~~~~~~lk~gG~li~~----~~~~~~~~~~~~~~ 219 (224)
....|+|+.+..+. +....++ .+....+|+|.+|+-. .-+.+.+.+.|++.
T Consensus 192 l~~aDiV~l~lP~t------~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 247 (526)
T PRK13581 192 LARADFITLHTPLT------PETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSG 247 (526)
T ss_pred HhhCCEEEEccCCC------hHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcC
Confidence 24679998766543 2333344 5688889998877743 34677888887754
No 427
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=68.96 E-value=14 Score=28.30 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=23.9
Q ss_pred CCCeEEEecCCC-chh-HHHHHhhcCCeEEEEeCC
Q 027388 84 RGDVVLDLACGK-GGD-LIKWDKAKIGYYVGIDIA 116 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~-~~~l~~~~~~~~~gvD~s 116 (224)
...+||=+|||. |.. +..++..+.++++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 667899999985 443 334444577799999987
No 428
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=68.89 E-value=11 Score=31.01 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhccCCeEEEEEeCCh--HHHHHH
Q 027388 183 ARARRALANVSALLRPGGTFIGTMPDA--NVIIKK 215 (224)
Q Consensus 183 ~~~~~~l~~~~~~lk~gG~li~~~~~~--~~~~~~ 215 (224)
..+..+|..+..+|+|||+|++.+.+. +.+.+.
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfHSLEDRiVK~ 251 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFHSLEDRIVKN 251 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHH
Confidence 356788999999999999999988875 666665
No 429
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=68.50 E-value=44 Score=31.03 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=66.0
Q ss_pred CeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccC--------CCCeeEEecccccccc
Q 027388 86 DVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF--------SFPARLICGDCYEVHL 156 (224)
Q Consensus 86 ~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~--------~~~v~~~~~d~~~~~~ 156 (224)
.+|.=||+|+ |.-...++......|+.+|.+++.++.+.+++...-..-.+...+ -.++++ ..|+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~---- 388 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP-TLDYA---- 388 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-eCCHH----
Confidence 4688889887 332222333455699999999999988776643110000000000 011221 11211
Q ss_pred ccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHh
Q 027388 157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKL 216 (224)
Q Consensus 157 ~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~ 216 (224)
.....|+|+= -+++..+-..+++.++-+.++|+.+|.-+|.. ...|.+.+
T Consensus 389 -----~~~~aDlViE-----av~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~ 440 (715)
T PRK11730 389 -----GFERVDVVVE-----AVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKAL 440 (715)
T ss_pred -----HhcCCCEEEe-----cccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhc
Confidence 1356777763 33344577889999999999999888766553 24444433
No 430
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=68.46 E-value=15 Score=33.99 Aligned_cols=107 Identities=16% Similarity=0.033 Sum_probs=61.9
Q ss_pred CeEEEecCCC-ch-hHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC--------CCeeEEeccccccc
Q 027388 86 DVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS--------FPARLICGDCYEVH 155 (224)
Q Consensus 86 ~~iLDiGcG~-G~-~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~--------~~v~~~~~d~~~~~ 155 (224)
.+|-=||+|+ |. ++..++ ...-.|+.+|.+++.++.+.+++...-..-.+...+. .++++ ..|+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~--- 388 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP-TLSYA--- 388 (714)
T ss_pred ceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-eCCHH---
Confidence 3577888886 22 333333 3456899999999999887766531100000000000 11111 11110
Q ss_pred cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC
Q 027388 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD 208 (224)
Q Consensus 156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~ 208 (224)
.....|+|+=. +++..+-..+++.++-++++|+.+|.-+|..
T Consensus 389 ------~~~~aDlViEa-----v~E~l~~K~~vf~~l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 389 ------GFDNVDIVVEA-----VVENPKVKAAVLAEVEQHVREDAILASNTST 430 (714)
T ss_pred ------HhcCCCEEEEc-----CcccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 13567877633 3334577889999999999999888876553
No 431
>PRK12939 short chain dehydrogenase; Provisional
Probab=68.33 E-value=45 Score=25.67 Aligned_cols=80 Identities=11% Similarity=-0.056 Sum_probs=45.6
Q ss_pred CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc-cc
Q 027388 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-KV 159 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 159 (224)
+++++|=.|++ |.++..+++ ....++++++.++..++...+.+.. ...++.++.+|+.+...- ..
T Consensus 6 ~~~~vlItGa~-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----------~~~~~~~~~~Dl~~~~~~~~~ 74 (250)
T PRK12939 6 AGKRALVTGAA-RGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEA----------AGGRAHAIAADLADPASVQRF 74 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh----------cCCcEEEEEccCCCHHHHHHH
Confidence 45778866654 445555543 2445788888887766655444331 123478888898753210 00
Q ss_pred c----CCCCCeeEEEEccc
Q 027388 160 L----ADDAPFDICSCQFA 174 (224)
Q Consensus 160 ~----~~~~~~D~i~~~~~ 174 (224)
. ..-+.+|+|+.+..
T Consensus 75 ~~~~~~~~~~id~vi~~ag 93 (250)
T PRK12939 75 FDAAAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 0 01156898886543
No 432
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=68.28 E-value=44 Score=24.37 Aligned_cols=101 Identities=13% Similarity=0.035 Sum_probs=54.2
Q ss_pred eEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCC
Q 027388 87 VVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD 163 (224)
Q Consensus 87 ~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 163 (224)
+|-=||+| .++..++. .....+++.|.++...+...+... . ...+..+. .
T Consensus 3 ~Ig~IGlG--~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~----------------~-~~~s~~e~--------~ 55 (163)
T PF03446_consen 3 KIGFIGLG--NMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGA----------------E-VADSPAEA--------A 55 (163)
T ss_dssp EEEEE--S--HHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTE----------------E-EESSHHHH--------H
T ss_pred EEEEEchH--HHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhh----------------h-hhhhhhhH--------h
Confidence 34445654 44444443 244589999999977766654411 1 12222222 1
Q ss_pred CCeeEEEEccccccccCCHHHHHHHHHH--HHhhccCCeEEEEE-eCCh---HHHHHHhhhcc
Q 027388 164 APFDICSCQFAMHYSWSTEARARRALAN--VSALLRPGGTFIGT-MPDA---NVIIKKLREEH 220 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~--~~~~lk~gG~li~~-~~~~---~~~~~~~~~~g 220 (224)
...|+|++... +.+...+++.. +...|++|.+++-. +..+ ..+.+.+.+.|
T Consensus 56 ~~~dvvi~~v~------~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g 112 (163)
T PF03446_consen 56 EQADVVILCVP------DDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG 112 (163)
T ss_dssp HHBSEEEE-SS------SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT
T ss_pred hcccceEeecc------cchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc
Confidence 35688886532 34667778887 88888887776643 3333 34555555554
No 433
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=68.22 E-value=46 Score=24.58 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=62.5
Q ss_pred cCCCeEEEecCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccc-ccccccC
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~ 161 (224)
....+|+=|||=+-...+.-.......++..|++...-.. +.+ .|..-|...- .+...
T Consensus 24 ~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~------------------~~~-~F~fyD~~~p~~~~~~-- 82 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF------------------GGD-EFVFYDYNEPEELPEE-- 82 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc------------------CCc-ceEECCCCChhhhhhh--
Confidence 3567899998876433332211245579999998833221 111 3455554431 11111
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~ 209 (224)
-.+.||+|++.-.+ + +.+-.......++.++++++.+++.++..
T Consensus 83 l~~~~d~vv~DPPF--l--~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 83 LKGKFDVVVIDPPF--L--SEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred cCCCceEEEECCCC--C--CHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 14799999998765 2 45555677777777889999999988754
No 434
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=68.06 E-value=16 Score=26.07 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=50.1
Q ss_pred EEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCee
Q 027388 89 LDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFD 167 (224)
Q Consensus 89 LDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~D 167 (224)
+=+|+|. |.+....+......|+.+.-++ .++..++.--.. ........+.......... .....+|
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~----~~~~~~D 69 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTI-------TGPDGDETVQPPIVISAPS----ADAGPYD 69 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEE-------EETTEEEEEEEEEEESSHG----HHHSTES
T ss_pred EEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEE-------EecccceecccccccCcch----hccCCCc
Confidence 3456654 3333333334667899999888 666544432100 0000001111111111110 0257899
Q ss_pred EEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 168 ICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 168 ~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
+|+..- ...+...++..+...+.+++.+++.
T Consensus 70 ~viv~v-------Ka~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 70 LVIVAV-------KAYQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp EEEE-S-------SGGGHHHHHHHHCTGEETTEEEEEE
T ss_pred EEEEEe-------cccchHHHHHHHhhccCCCcEEEEE
Confidence 998653 2234567888999999999766654
No 435
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=67.88 E-value=63 Score=26.00 Aligned_cols=96 Identities=10% Similarity=-0.055 Sum_probs=48.7
Q ss_pred eEEEecCCCch-hHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCC
Q 027388 87 VVLDLACGKGG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165 (224)
Q Consensus 87 ~iLDiGcG~G~-~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 165 (224)
+|+=+|+|.-+ .....+.....+|+.++.++..++..++.... . . .... ......... .. ....
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~-------~-~-~~~~---~~~~~~~~~--~~-~~~~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLR-------L-E-DGEI---TVPVLAADD--PA-ELGP 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCc-------c-c-CCce---eecccCCCC--hh-HcCC
Confidence 46778887622 22222223446899999877666665543110 0 0 0000 000000100 00 1267
Q ss_pred eeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 166 FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 166 ~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
+|+|+..--. .+...++..+...+.++..++.
T Consensus 67 ~d~vila~k~-------~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 67 QDLVILAVKA-------YQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred CCEEEEeccc-------ccHHHHHHHHhhhcCCCCEEEE
Confidence 8988865321 3456778888888877766554
No 436
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=67.85 E-value=64 Score=26.09 Aligned_cols=115 Identities=9% Similarity=-0.008 Sum_probs=59.1
Q ss_pred CeEEEecCCC-ch-hHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccccccccc-CCC-------CeeEEeccccccc
Q 027388 86 DVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSF-------PARLICGDCYEVH 155 (224)
Q Consensus 86 ~~iLDiGcG~-G~-~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~-------~v~~~~~d~~~~~ 155 (224)
++|.=||+|. |. ++..++ .....|+++|.++..++.+++++...-... ...+ +.. .......+..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~--- 79 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAA-AAGMDVWLLDSDPAALSRGLDSISSSLARL-VKKGKMSQEEADATLGRIRCTTNLE--- 79 (295)
T ss_pred CEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHhceEeeCCHH---
Confidence 4567778774 32 233332 344589999999999887655432000000 0000 000 0001111111
Q ss_pred cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC--ChHHHHHHh
Q 027388 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP--DANVIIKKL 216 (224)
Q Consensus 156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~--~~~~~~~~~ 216 (224)
.....|+|+..- .+.......++.++...++++.+|+..+. ....+.+.+
T Consensus 80 ------~~~~aD~Vieav-----~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~ 131 (295)
T PLN02545 80 ------ELRDADFIIEAI-----VESEDLKKKLFSELDRICKPSAILASNTSSISITRLASAT 131 (295)
T ss_pred ------HhCCCCEEEEcC-----ccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhc
Confidence 124678887542 22345667788889998898887654333 344444443
No 437
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=67.52 E-value=55 Score=26.03 Aligned_cols=88 Identities=14% Similarity=0.053 Sum_probs=43.4
Q ss_pred CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEe-ccccccccccccCCCCCeeEEEEcccc---------cc
Q 027388 108 GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVHLDKVLADDAPFDICSCQFAM---------HY 177 (224)
Q Consensus 108 ~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~~D~i~~~~~l---------~~ 177 (224)
.+++.+|.+++.++.....+... .... ...++.. .|..+ .-...|+|+..... ..
T Consensus 27 ~el~L~D~~~~~l~~~~~dl~~~------~~~~-~~~~i~~~~d~~~--------~~~~aDiVv~t~~~~~~~g~~r~~~ 91 (263)
T cd00650 27 IELVLYDIDEEKLKGVAMDLQDA------VEPL-ADIKVSITDDPYE--------AFKDADVVIITAGVGRKPGMGRLDL 91 (263)
T ss_pred eEEEEEeCCcccchHHHHHHHHh------hhhc-cCcEEEECCchHH--------HhCCCCEEEECCCCCCCcCCCHHHH
Confidence 58999999987666655544310 0001 1122221 12110 13568999873311 11
Q ss_pred ccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHH
Q 027388 178 SWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212 (224)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~ 212 (224)
+....+-...+.+.+.+.. |+|++++.+ |+..+
T Consensus 92 ~~~n~~i~~~i~~~i~~~~-p~a~~i~~t-NP~d~ 124 (263)
T cd00650 92 LKRNVPIVKEIGDNIEKYS-PDAWIIVVS-NPVDI 124 (263)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCeEEEEec-CcHHH
Confidence 1112233455666666655 888877765 44333
No 438
>PLN03139 formate dehydrogenase; Provisional
Probab=67.48 E-value=37 Score=28.94 Aligned_cols=105 Identities=14% Similarity=0.105 Sum_probs=58.3
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+++|.=||+|. |.-....+.....+++++|.+....+..... .+.+ ..++.++
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~----------------g~~~-~~~l~el-------- 252 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKET----------------GAKF-EEDLDAM-------- 252 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhc----------------Ccee-cCCHHHH--------
Confidence 567888888765 3323333334556899999875322222110 1121 1122222
Q ss_pred CCCeeEEEEccccccccCCHHHHHHH-HHHHHhhccCCeEEEEE----eCChHHHHHHhhhc
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRA-LANVSALLRPGGTFIGT----MPDANVIIKKLREE 219 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~-l~~~~~~lk~gG~li~~----~~~~~~~~~~~~~~ 219 (224)
....|+|+++..+. ++...+ =.+....+|+|.+||-. .-+.+.+.+.|+..
T Consensus 253 l~~sDvV~l~lPlt------~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 308 (386)
T PLN03139 253 LPKCDVVVINTPLT------EKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSG 308 (386)
T ss_pred HhhCCEEEEeCCCC------HHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcC
Confidence 24679998876543 233333 35788889998766643 33677888877654
No 439
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=67.21 E-value=11 Score=31.01 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhccCCeEEEEEeCCh--HHHHHHhh
Q 027388 183 ARARRALANVSALLRPGGTFIGTMPDA--NVIIKKLR 217 (224)
Q Consensus 183 ~~~~~~l~~~~~~lk~gG~li~~~~~~--~~~~~~~~ 217 (224)
..+..+|..+..+|+|||++++.+.+. +.+++.+-
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFHSLEDRiVK~~f 254 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFHSLEDRIVKQFF 254 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecchhhHHHHHHH
Confidence 457888999999999999999998875 55655443
No 440
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=67.08 E-value=12 Score=30.53 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhccCCeEEEEEeCCh--HHHHHH
Q 027388 183 ARARRALANVSALLRPGGTFIGTMPDA--NVIIKK 215 (224)
Q Consensus 183 ~~~~~~l~~~~~~lk~gG~li~~~~~~--~~~~~~ 215 (224)
..+..+|..+..+|+|||++++.+.+. +.+.+.
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visfHSlEDriVK~ 247 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISFHSLEDRIVKR 247 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHH
Confidence 356788999999999999999988875 666665
No 441
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=66.93 E-value=41 Score=27.12 Aligned_cols=99 Identities=17% Similarity=0.112 Sum_probs=62.0
Q ss_pred hhcCCCeEEEe--cCCCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccc
Q 027388 81 YARRGDVVLDL--ACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158 (224)
Q Consensus 81 ~~~~~~~iLDi--GcG~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 158 (224)
+.+++.+||=- ..|-|.++.+|++.....++++--+..-.+.|+++-. ...|.+...|+...-...
T Consensus 143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~------------~h~I~y~~eD~v~~V~ki 210 (336)
T KOG1197|consen 143 NVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGA------------EHPIDYSTEDYVDEVKKI 210 (336)
T ss_pred CCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCC------------cceeeccchhHHHHHHhc
Confidence 45678877643 3456778888887777788899888888888887754 212333444433211110
Q ss_pred ccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 159 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
. ....+|+++-+-.. +.+..-...||++|.++-
T Consensus 211 T--ngKGVd~vyDsvG~-----------dt~~~sl~~Lk~~G~mVS 243 (336)
T KOG1197|consen 211 T--NGKGVDAVYDSVGK-----------DTFAKSLAALKPMGKMVS 243 (336)
T ss_pred c--CCCCceeeeccccc-----------hhhHHHHHHhccCceEEE
Confidence 0 25788888744321 244556778899998773
No 442
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=66.81 E-value=27 Score=27.23 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=42.5
Q ss_pred eEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHH-hccCCcccccccccCCCCeeEEecccccccc-ccccC
Q 027388 87 VVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRT-RYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVLA 161 (224)
Q Consensus 87 ~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~ 161 (224)
+++=+|||. ++..+++ .....++.+|.++..++...+ ... ...+++|..+... ...
T Consensus 2 ~iiIiG~G~--vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~---------------~~~v~gd~t~~~~L~~a-- 62 (225)
T COG0569 2 KIIIIGAGR--VGRSVARELSEEGHNVVLIDRDEERVEEFLADELD---------------THVVIGDATDEDVLEEA-- 62 (225)
T ss_pred EEEEECCcH--HHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcc---------------eEEEEecCCCHHHHHhc--
Confidence 456677765 4444443 355689999999988777433 232 6788888765432 111
Q ss_pred CCCCeeEEEEc
Q 027388 162 DDAPFDICSCQ 172 (224)
Q Consensus 162 ~~~~~D~i~~~ 172 (224)
....+|++++.
T Consensus 63 gi~~aD~vva~ 73 (225)
T COG0569 63 GIDDADAVVAA 73 (225)
T ss_pred CCCcCCEEEEe
Confidence 35788998864
No 443
>PRK08265 short chain dehydrogenase; Provisional
Probab=66.70 E-value=61 Score=25.42 Aligned_cols=77 Identities=16% Similarity=-0.003 Sum_probs=44.2
Q ss_pred CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc-cc
Q 027388 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-KV 159 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 159 (224)
.++++|=.|++.| ++..++. ....+|+.++.+....+...+.. ..++.++.+|+.+...- ..
T Consensus 5 ~~k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~~~ 70 (261)
T PRK08265 5 AGKVAIVTGGATL-IGAAVARALVAAGARVAIVDIDADNGAAVAASL-------------GERARFIATDITDDAAIERA 70 (261)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------------CCeeEEEEecCCCHHHHHHH
Confidence 4567887876544 5554443 24558999998876555443332 22477888888754210 00
Q ss_pred c----CCCCCeeEEEEccc
Q 027388 160 L----ADDAPFDICSCQFA 174 (224)
Q Consensus 160 ~----~~~~~~D~i~~~~~ 174 (224)
. ...+..|+++.+..
T Consensus 71 ~~~~~~~~g~id~lv~~ag 89 (261)
T PRK08265 71 VATVVARFGRVDILVNLAC 89 (261)
T ss_pred HHHHHHHhCCCCEEEECCC
Confidence 0 01256898886643
No 444
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.69 E-value=29 Score=28.34 Aligned_cols=79 Identities=19% Similarity=0.090 Sum_probs=51.1
Q ss_pred CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc----
Q 027388 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL---- 156 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---- 156 (224)
.+..||==|.|.| ++..++. ....+++..|+.....+...+.... .+ .++.+.+|+.+...
T Consensus 37 ~g~~vLITGgg~G-lGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~----------~g-~~~~y~cdis~~eei~~~ 104 (300)
T KOG1201|consen 37 SGEIVLITGGGSG-LGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRK----------IG-EAKAYTCDISDREEIYRL 104 (300)
T ss_pred cCCEEEEeCCCch-HHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHh----------cC-ceeEEEecCCCHHHHHHH
Confidence 4677888888877 5554443 2344888999998887766665541 12 58889999876431
Q ss_pred -ccccCCCCCeeEEEEccc
Q 027388 157 -DKVLADDAPFDICSCQFA 174 (224)
Q Consensus 157 -~~~~~~~~~~D~i~~~~~ 174 (224)
......-+.+|+++.+-.
T Consensus 105 a~~Vk~e~G~V~ILVNNAG 123 (300)
T KOG1201|consen 105 AKKVKKEVGDVDILVNNAG 123 (300)
T ss_pred HHHHHHhcCCceEEEeccc
Confidence 011113478999997753
No 445
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=65.94 E-value=7.7 Score=29.60 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhccCCeEEEEEeCCh
Q 027388 183 ARARRALANVSALLRPGGTFIGTMPDA 209 (224)
Q Consensus 183 ~~~~~~l~~~~~~lk~gG~li~~~~~~ 209 (224)
.-....+.++.++|+|||.+++...+.
T Consensus 33 ~~~~~~~~~~~rvLk~~g~~~i~~~~~ 59 (231)
T PF01555_consen 33 EWMEEWLKECYRVLKPGGSIFIFIDDR 59 (231)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE-CC
T ss_pred HHHHHHHHHHHhhcCCCeeEEEEecch
Confidence 446788999999999999999876543
No 446
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=65.60 E-value=61 Score=27.54 Aligned_cols=106 Identities=12% Similarity=0.082 Sum_probs=55.6
Q ss_pred hcCCCeEEEecCCC-chhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEe---cccccccc
Q 027388 82 ARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC---GDCYEVHL 156 (224)
Q Consensus 82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~---~d~~~~~~ 156 (224)
..++.+||=.|+|. |..+..+++... ..++.+|.++..++.+++.-. . .+.. .+..+. .
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga--------------~-~v~~~~~~~~~~~-v 246 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC--------------E-TVDLSKDATLPEQ-I 246 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC--------------e-EEecCCcccHHHH-H
Confidence 45677776677754 445555555433 346677898888888876421 1 1111 111110 0
Q ss_pred ccccCCCCCeeEEEEccccc---cccC-CHHHHHHHHHHHHhhccCCeEEEE
Q 027388 157 DKVLADDAPFDICSCQFAMH---YSWS-TEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 157 ~~~~~~~~~~D~i~~~~~l~---~~~~-~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
.... ....+|+++-.-... +..+ ...+....+....+.+++||.+++
T Consensus 247 ~~~~-~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 247 EQIL-GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred HHHc-CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 0000 234689887432211 0000 001223477888899999998776
No 447
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=65.00 E-value=28 Score=28.66 Aligned_cols=101 Identities=19% Similarity=0.122 Sum_probs=60.5
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+++|.=||.|. |+-...++.....+|+++|.+... . . ..+. ..++.++
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~------~-~-------------~~~~--~~~l~el-------- 193 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKN------K-N-------------EEYE--RVSLEEL-------- 193 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccc------c-c-------------cCce--eecHHHH--------
Confidence 578888888876 655555555566789999986421 0 0 0011 2232222
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE----eCChHHHHHHhhhc
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT----MPDANVIIKKLREE 219 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~----~~~~~~~~~~~~~~ 219 (224)
-...|+|+.+..+. .+-..-+=.+....+|||.+||=. .-+.+.+.+.|++.
T Consensus 194 l~~sDvv~lh~Plt-----~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g 249 (311)
T PRK08410 194 LKTSDIISIHAPLN-----EKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEK 249 (311)
T ss_pred hhcCCEEEEeCCCC-----chhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 24679888765442 122223345678888998887743 44778888888753
No 448
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=64.24 E-value=58 Score=30.20 Aligned_cols=116 Identities=16% Similarity=0.005 Sum_probs=66.3
Q ss_pred CeEEEecCCC-ch-hHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC--------CCeeEEeccccccc
Q 027388 86 DVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS--------FPARLICGDCYEVH 155 (224)
Q Consensus 86 ~~iLDiGcG~-G~-~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~--------~~v~~~~~d~~~~~ 155 (224)
.+|.=||+|+ |. ++..++......|+.+|.+++.++.+.+++...-..-.+...+. .++++. .|+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~--- 385 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYR--- 385 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChH---
Confidence 5688889887 32 33333324456899999999998887766541100000000000 112221 1111
Q ss_pred cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHh
Q 027388 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKL 216 (224)
Q Consensus 156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~ 216 (224)
.....|+|+=. +++..+-..+++.++-+.++|+.+|.-+|.. ...|.+.+
T Consensus 386 ------~~~~aDlViEa-----v~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~ 437 (708)
T PRK11154 386 ------GFKHADVVIEA-----VFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAA 437 (708)
T ss_pred ------HhccCCEEeec-----ccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhc
Confidence 13567877633 3334577889999999999999888876553 34444433
No 449
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=63.90 E-value=58 Score=24.18 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=21.1
Q ss_pred eEEEecCCC-chh-HHHHHhhcCCeEEEEeCCh
Q 027388 87 VVLDLACGK-GGD-LIKWDKAKIGYYVGIDIAE 117 (224)
Q Consensus 87 ~iLDiGcG~-G~~-~~~l~~~~~~~~~gvD~s~ 117 (224)
+|+=+|||. |.. +..++..+..+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 477789984 544 3344445777899999876
No 450
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=63.81 E-value=68 Score=26.26 Aligned_cols=98 Identities=20% Similarity=0.133 Sum_probs=51.3
Q ss_pred cCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 83 RRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
.++.+||=.|+|. |..+..+++.... .+++++-++...+.+++.-. ...+.....+.. ......
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~--~~~~~~ 227 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGA------------DVVINPREEDVV--EVKSVT 227 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCc------------ceeeCcccccHH--HHHHHc
Confidence 4566777667644 5566666655554 68888777766666654211 000011111111 000000
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
..+.+|+++..-.- ...+..+.+.|+++|.++..
T Consensus 228 -~~~~vd~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 228 -DGTGVDVVLEMSGN----------PKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred -CCCCCCEEEECCCC----------HHHHHHHHHHhccCCEEEEE
Confidence 23578999853211 12355667888899988754
No 451
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=63.81 E-value=62 Score=26.57 Aligned_cols=42 Identities=21% Similarity=0.220 Sum_probs=28.3
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHH
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRT 125 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~ 125 (224)
++.+||=.|+|. |..+..+++.... .++.++.++...+.+.+
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 218 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA 218 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 567787777643 4455555554444 78899998888877754
No 452
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=63.64 E-value=32 Score=30.15 Aligned_cols=99 Identities=11% Similarity=0.030 Sum_probs=56.2
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+++|+=+|+|. |......+.....+|+.+|.++.....+... + +.+ .++.+.
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~--------------G--~~~--~~leel-------- 306 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAME--------------G--YQV--VTLEDV-------- 306 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhc--------------C--cee--ccHHHH--------
Confidence 688999999997 4444444444556899998887544333221 1 111 122111
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHH-HHHHhhccCCeEEEEEeC-ChHHHHHHhhh
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRAL-ANVSALLRPGGTFIGTMP-DANVIIKKLRE 218 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l-~~~~~~lk~gG~li~~~~-~~~~~~~~~~~ 218 (224)
....|+|++.-.- ..++ .+....+|||++|+-... +.+.....++.
T Consensus 307 l~~ADIVI~atGt----------~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~ 354 (476)
T PTZ00075 307 VETADIFVTATGN----------KDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEA 354 (476)
T ss_pred HhcCCEEEECCCc----------ccccCHHHHhccCCCcEEEEcCCCchHHhHHHHHh
Confidence 2468999875321 1233 467888999998886533 32333344444
No 453
>PRK10083 putative oxidoreductase; Provisional
Probab=63.61 E-value=58 Score=26.58 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=30.4
Q ss_pred hhcCCCeEEEecCCC-chhHHHHHhh--cCCeEEEEeCChhHHHHHHHh
Q 027388 81 YARRGDVVLDLACGK-GGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTR 126 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~--~~~~~~gvD~s~~~~~~a~~~ 126 (224)
...++.+||=.|+|. |..+..+++. +...+++++.++...+.+++.
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~ 205 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES 205 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh
Confidence 345677888888643 3344455542 444588899999888887654
No 454
>PRK07806 short chain dehydrogenase; Provisional
Probab=63.58 E-value=66 Score=24.77 Aligned_cols=110 Identities=10% Similarity=-0.055 Sum_probs=54.3
Q ss_pred CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCCh-hHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc-c
Q 027388 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAE-GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-K 158 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~-~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 158 (224)
.++++|=.|++.| ++..+++ ....+|++++.+. ...+.....+. ....++.++.+|+.+...- .
T Consensus 5 ~~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~----------~~~~~~~~~~~D~~~~~~~~~ 73 (248)
T PRK07806 5 PGKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIE----------AAGGRASAVGADLTDEESVAA 73 (248)
T ss_pred CCcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHH----------hcCCceEEEEcCCCCHHHHHH
Confidence 4577888886543 5554443 2345788777653 23333333322 1123467788887754310 0
Q ss_pred c----cCCCCCeeEEEEcccccccc---------CCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 159 V----LADDAPFDICSCQFAMHYSW---------STEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 159 ~----~~~~~~~D~i~~~~~l~~~~---------~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
. ....+.+|+++.+....... ........+++.+...++.+|.+++
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~ 132 (248)
T PRK07806 74 LMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVF 132 (248)
T ss_pred HHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEE
Confidence 0 00114678877554321100 0111244566677776666665554
No 455
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=63.25 E-value=25 Score=28.38 Aligned_cols=106 Identities=17% Similarity=0.121 Sum_probs=55.2
Q ss_pred CeEEEecCCCch--hHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCC--------CCeeEEeccccccc
Q 027388 86 DVVLDLACGKGG--DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS--------FPARLICGDCYEVH 155 (224)
Q Consensus 86 ~~iLDiGcG~G~--~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~--------~~v~~~~~d~~~~~ 155 (224)
.+|.=||+|.=. ++..++ .....|+.+|.+++.++.+.++.........+...+. .++++ ..+..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~--- 79 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCA-LAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLE--- 79 (292)
T ss_pred CEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHH---
Confidence 457777887522 223332 3445899999999988876544321000000000000 01111 11211
Q ss_pred cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
.....|+|+..-. +.......+++.+...++++.+++..+.
T Consensus 80 ------~~~~aD~Vieavp-----e~~~~k~~~~~~l~~~~~~~~ii~s~ts 120 (292)
T PRK07530 80 ------DLADCDLVIEAAT-----EDETVKRKIFAQLCPVLKPEAILATNTS 120 (292)
T ss_pred ------HhcCCCEEEEcCc-----CCHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 1246788876431 1224456778899999999887764433
No 456
>PRK08324 short chain dehydrogenase; Validated
Probab=63.24 E-value=53 Score=30.25 Aligned_cols=79 Identities=19% Similarity=0.062 Sum_probs=46.3
Q ss_pred CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc---
Q 027388 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--- 157 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--- 157 (224)
.++++|=.|++.| ++..++. ....+|+++|.+...++.+...+.. ...+.++.+|+.+....
T Consensus 421 ~gk~vLVTGasgg-IG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-----------~~~v~~v~~Dvtd~~~v~~~ 488 (681)
T PRK08324 421 AGKVALVTGAAGG-IGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-----------PDRALGVACDVTDEAAVQAA 488 (681)
T ss_pred CCCEEEEecCCCH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-----------cCcEEEEEecCCCHHHHHHH
Confidence 4577888876443 4444332 3445899999998777666554431 02477888887653210
Q ss_pred --cccCCCCCeeEEEEccc
Q 027388 158 --KVLADDAPFDICSCQFA 174 (224)
Q Consensus 158 --~~~~~~~~~D~i~~~~~ 174 (224)
......+.+|+|+.+-.
T Consensus 489 ~~~~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 489 FEEAALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 00001247899987654
No 457
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=63.06 E-value=23 Score=28.45 Aligned_cols=103 Identities=11% Similarity=0.048 Sum_probs=54.1
Q ss_pred eEEEecCCC--chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCccccccccc-CC--------CCeeEEeccccccc
Q 027388 87 VVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FS--------FPARLICGDCYEVH 155 (224)
Q Consensus 87 ~iLDiGcG~--G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~--------~~v~~~~~d~~~~~ 155 (224)
+|.=||+|. +.++..++ .....|+++|.++..++.+++++... .......+ +. .++++ ..|..
T Consensus 5 kI~VIG~G~mG~~ia~~la-~~g~~V~~~d~~~~~~~~~~~~i~~~-l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~--- 78 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCA-VAGYDVVMVDISDAAVDRGLATITKS-LDRLVKKGKMTEADKEAALARITG-TTDLD--- 78 (282)
T ss_pred EEEEEccCHHHHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHhCeEE-eCCHH---
Confidence 466677764 33334343 33448999999999987665433210 00000000 00 01111 12211
Q ss_pred cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEe
Q 027388 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM 206 (224)
Q Consensus 156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~ 206 (224)
....+|+|+..- . +...-...++.++.+.++++..+.-.+
T Consensus 79 ------~~~~aDlVi~av-~----e~~~~k~~~~~~l~~~~~~~~il~s~t 118 (282)
T PRK05808 79 ------DLKDADLVIEAA-T----ENMDLKKKIFAQLDEIAKPEAILATNT 118 (282)
T ss_pred ------HhccCCeeeecc-c----ccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 125678887542 1 122445688999999999988775443
No 458
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=62.67 E-value=22 Score=29.61 Aligned_cols=34 Identities=26% Similarity=0.202 Sum_probs=24.0
Q ss_pred CCCeEEEecCCC-chh-HHHHHhhcCCeEEEEeCCh
Q 027388 84 RGDVVLDLACGK-GGD-LIKWDKAKIGYYVGIDIAE 117 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~-~~~l~~~~~~~~~gvD~s~ 117 (224)
...+||=+|||. |.. +..|+..+.++++.+|.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 567899999985 443 3344445677899999874
No 459
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.38 E-value=47 Score=27.61 Aligned_cols=46 Identities=17% Similarity=0.070 Sum_probs=35.1
Q ss_pred cCCCeEEEecC-CCchhHHHHHhhcCCeEEEEeCChhHHHHHHHhcc
Q 027388 83 RRGDVVLDLAC-GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128 (224)
Q Consensus 83 ~~~~~iLDiGc-G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~ 128 (224)
.+++.+-=+|. |-|+++..+++.-..+|+++|-+...-+.+-+++-
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LG 226 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLG 226 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcC
Confidence 46666655555 36999999998888899999999877777766654
No 460
>PRK06932 glycerate dehydrogenase; Provisional
Probab=62.28 E-value=33 Score=28.27 Aligned_cols=100 Identities=18% Similarity=0.170 Sum_probs=58.3
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+++|.=||.|. |.-....++....+|+++|.+.. .... .. ..++.++
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~------~~~~---------------~~--~~~l~el-------- 194 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGA------SVCR---------------EG--YTPFEEV-------- 194 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcc------cccc---------------cc--cCCHHHH--------
Confidence 567888888876 55555555456668888885421 0000 00 1122111
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE----eCChHHHHHHhhhc
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT----MPDANVIIKKLREE 219 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~----~~~~~~~~~~~~~~ 219 (224)
-...|+|+.+..+. .+-..-+=.+....+|||.+||=. .-+.+.+.+.|++.
T Consensus 195 l~~sDiv~l~~Plt-----~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g 250 (314)
T PRK06932 195 LKQADIVTLHCPLT-----ETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENG 250 (314)
T ss_pred HHhCCEEEEcCCCC-----hHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 25679998766543 222233345677888988877743 44677888887754
No 461
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=62.15 E-value=46 Score=27.59 Aligned_cols=103 Identities=16% Similarity=0.108 Sum_probs=59.2
Q ss_pred CCCeEEEecCCC-chhHHHHHh-hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 84 RGDVVLDLACGK-GGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~-~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
.++++.=||.|. |......+. ....+|++.|.....-. . ... .+.+ .++.++
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~-~-~~~---------------~~~~--~~l~el------- 197 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA-E-ERF---------------NARY--CDLDTL------- 197 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh-H-Hhc---------------CcEe--cCHHHH-------
Confidence 567888888876 554444443 34457888887542111 0 110 1222 233222
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHH-HHHHHhhccCCeEEEEE----eCChHHHHHHhhhc
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRA-LANVSALLRPGGTFIGT----MPDANVIIKKLREE 219 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~-l~~~~~~lk~gG~li~~----~~~~~~~~~~~~~~ 219 (224)
-...|+|+++..+. ++...+ =.+....+|||.+||-. .-+.+.+.+.|++.
T Consensus 198 -l~~sDvv~lh~plt------~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 253 (323)
T PRK15409 198 -LQESDFVCIILPLT------DETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKG 253 (323)
T ss_pred -HHhCCEEEEeCCCC------hHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 25789998776553 222333 35688888998777743 44778888888754
No 462
>PLN02928 oxidoreductase family protein
Probab=61.89 E-value=43 Score=28.04 Aligned_cols=117 Identities=13% Similarity=0.020 Sum_probs=60.2
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+++|.=||.|. |......+.....+|+++|.+...-......+.. .. ...+.........+.. .
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~L~e-----l 223 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPN--------GD-VDDLVDEKGGHEDIYE-----F 223 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhcccc--------cc-ccccccccCcccCHHH-----H
Confidence 467888888876 5555555545566899999874211111000000 00 0000000011111111 1
Q ss_pred CCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE----eCChHHHHHHhhhc
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT----MPDANVIIKKLREE 219 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~----~~~~~~~~~~~~~~ 219 (224)
-...|+|++...+. ..-..-+=.+....||||.+||=. .-+.+.+.+.|+..
T Consensus 224 l~~aDiVvl~lPlt-----~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g 279 (347)
T PLN02928 224 AGEADIVVLCCTLT-----KETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESG 279 (347)
T ss_pred HhhCCEEEECCCCC-----hHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 35689999876543 111222235788888998766643 44677888887753
No 463
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=61.11 E-value=57 Score=25.97 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=31.5
Q ss_pred hcCCCeEEEecC--CCchhHHHHHhhcCCeEEEEeCChhHHHHHHH
Q 027388 82 ARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (224)
Q Consensus 82 ~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~ 125 (224)
..++.+||-.|| +.|..+..++......++.++.++...+.++.
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 182 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARA 182 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHH
Confidence 456789999998 34555555665556679999999887777754
No 464
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=61.08 E-value=66 Score=26.71 Aligned_cols=103 Identities=18% Similarity=0.157 Sum_probs=63.9
Q ss_pred CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
.++++-=||.| +++..+++ ....+++..|.++. ....+... ..+.. +.++
T Consensus 145 ~gktvGIiG~G--rIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~~---------------~~y~~--l~el------ 197 (324)
T COG1052 145 RGKTLGIIGLG--RIGQAVARRLKGFGMKVLYYDRSPN--PEAEKELG---------------ARYVD--LDEL------ 197 (324)
T ss_pred CCCEEEEECCC--HHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhcC---------------ceecc--HHHH------
Confidence 56777767654 45555443 34568999999886 33322221 33333 2222
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE----eCChHHHHHHhhhcc
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT----MPDANVIIKKLREEH 220 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~----~~~~~~~~~~~~~~g 220 (224)
..+.|+|+.+..+. .+-..-+=.+....+|+|++|+=. .-+...+.+.|++..
T Consensus 198 --l~~sDii~l~~Plt-----~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~ 254 (324)
T COG1052 198 --LAESDIISLHCPLT-----PETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGK 254 (324)
T ss_pred --HHhCCEEEEeCCCC-----hHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCC
Confidence 35789998776653 233444556788899998888853 557788888887653
No 465
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=61.06 E-value=85 Score=25.20 Aligned_cols=98 Identities=9% Similarity=0.134 Sum_probs=52.2
Q ss_pred eEEEecCCC--chhHHHHHhhc---CCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 87 VVLDLACGK--GGDLIKWDKAK---IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 87 ~iLDiGcG~--G~~~~~l~~~~---~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
+|.=||||. +.++..+...+ ..++++.|.++..++.+.+... +.. ..+..+.
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g---------------~~~-~~~~~e~------- 60 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYG---------------ITI-TTNNNEV------- 60 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcC---------------cEE-eCCcHHH-------
Confidence 577788875 22233333222 2369999999877666544321 221 1222111
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC---ChHHHHHHh
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKL 216 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~---~~~~~~~~~ 216 (224)
....|+|+..- .+.....++..+...++++ .++++.. +.+.|.+.+
T Consensus 61 -~~~aDiIiLav-------kP~~~~~vl~~l~~~~~~~-~lvISi~AGi~i~~l~~~l 109 (272)
T PRK12491 61 -ANSADILILSI-------KPDLYSSVINQIKDQIKND-VIVVTIAAGKSIKSTENEF 109 (272)
T ss_pred -HhhCCEEEEEe-------ChHHHHHHHHHHHHhhcCC-cEEEEeCCCCcHHHHHHhc
Confidence 13568887543 2355677777777777654 4555533 334444444
No 466
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=61.05 E-value=3.3 Score=27.34 Aligned_cols=15 Identities=27% Similarity=0.629 Sum_probs=10.9
Q ss_pred EEEecCCCchhHHHH
Q 027388 88 VLDLACGKGGDLIKW 102 (224)
Q Consensus 88 iLDiGcG~G~~~~~l 102 (224)
=+|||||.|......
T Consensus 6 NIDIGcG~GNTmda~ 20 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAA 20 (124)
T ss_pred ccccccCCCcchhhh
Confidence 479999999654443
No 467
>PRK08655 prephenate dehydrogenase; Provisional
Probab=60.62 E-value=1.1e+02 Score=26.47 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=22.0
Q ss_pred CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEE
Q 027388 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li 203 (224)
..+|+|+..-.. .....++..+...+++|..++
T Consensus 57 ~~aDvVIlavp~-------~~~~~vl~~l~~~l~~~~iVi 89 (437)
T PRK08655 57 KDADIVIISVPI-------NVTEDVIKEVAPHVKEGSLLM 89 (437)
T ss_pred ccCCEEEEecCH-------HHHHHHHHHHHhhCCCCCEEE
Confidence 457888765432 344677788888888876544
No 468
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=60.14 E-value=69 Score=25.84 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=21.9
Q ss_pred CCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 164 ~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
..+|+|+..--- .....++..+...+.++..++.
T Consensus 67 ~~~d~vilavk~-------~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 67 GPFDLVILAVKA-------YQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred CCCCEEEEEecc-------cCHHHHHHHHHhhcCCCCEEEE
Confidence 678988754322 2356677788887877765543
No 469
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=59.55 E-value=54 Score=26.87 Aligned_cols=99 Identities=20% Similarity=0.162 Sum_probs=51.3
Q ss_pred cCCCeEEEecCC-CchhHHHHHhhcCCe-EEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 83 RRGDVVLDLACG-KGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 83 ~~~~~iLDiGcG-~G~~~~~l~~~~~~~-~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
.++.+||=.|+| .|..+..++.....+ +++++-++...+.++..-. ..-+.....++.+ .+...
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~------------~~~v~~~~~~~~~-~l~~~- 225 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGA------------TYVVNPFKEDVVK-EVADL- 225 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC------------cEEEcccccCHHH-HHHHh-
Confidence 456676666654 244555566554544 8888888877776654311 0001111111100 00000
Q ss_pred CCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.....+|+++.... . ...+..+.+.|+++|.++..
T Consensus 226 ~~~~~~d~vld~~g------~----~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 226 TDGEGVDVFLEMSG------A----PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred cCCCCCCEEEECCC------C----HHHHHHHHHhhcCCCEEEEE
Confidence 02356899986421 1 13466778888898887654
No 470
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=59.27 E-value=26 Score=29.05 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=33.4
Q ss_pred hcCCCeEEEecCCCchhHHHHHh--hcCCeEEEEeCChhHHHHHHHhcc
Q 027388 82 ARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYN 128 (224)
Q Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~--~~~~~~~gvD~s~~~~~~a~~~~~ 128 (224)
..++.++.=+|+|.=.++...-. .+..+++|||++++-.+.|++--.
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGa 238 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGA 238 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCc
Confidence 35677777777776444443322 356799999999999999987644
No 471
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=59.22 E-value=1.2e+02 Score=26.36 Aligned_cols=38 Identities=16% Similarity=0.001 Sum_probs=27.4
Q ss_pred eEEEecCCCchhHHHHHhh--------cCCeEEEEeCChhHHHHHHH
Q 027388 87 VVLDLACGKGGDLIKWDKA--------KIGYYVGIDIAEGSIEDCRT 125 (224)
Q Consensus 87 ~iLDiGcG~G~~~~~l~~~--------~~~~~~gvD~s~~~~~~a~~ 125 (224)
+|.=||+|+. ++..+... ...+++.+|+++..++....
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~ 47 (437)
T cd05298 2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAE 47 (437)
T ss_pred eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHH
Confidence 5677899986 77665431 34689999999988777443
No 472
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=59.06 E-value=70 Score=24.41 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=23.6
Q ss_pred CCCeEEEecCCC-ch-hHHHHHhhcCCeEEEEeCC
Q 027388 84 RGDVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIA 116 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~-~~~~l~~~~~~~~~gvD~s 116 (224)
...+|+=+|||. |. .+..++..+.++++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 567899999985 33 3334444566789999988
No 473
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=59.00 E-value=56 Score=23.03 Aligned_cols=75 Identities=11% Similarity=0.029 Sum_probs=43.0
Q ss_pred cCCCeEEEecCCC-chhHH-HHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 83 RRGDVVLDLACGK-GGDLI-KWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 83 ~~~~~iLDiGcG~-G~~~~-~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
-+++++|=+|+|. |+... .+...+..+++.+.-+....+...+.+. ...+.+. ++.++..
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~------------~~~~~~~--~~~~~~~---- 71 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG------------GVNIEAI--PLEDLEE---- 71 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT------------GCSEEEE--EGGGHCH----
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC------------cccccee--eHHHHHH----
Confidence 4688999999865 22222 2333466679999988766655554442 1123333 3333321
Q ss_pred CCCCCeeEEEEccccc
Q 027388 161 ADDAPFDICSCQFAMH 176 (224)
Q Consensus 161 ~~~~~~D~i~~~~~l~ 176 (224)
....+|+|++.-...
T Consensus 72 -~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 72 -ALQEADIVINATPSG 86 (135)
T ss_dssp -HHHTESEEEE-SSTT
T ss_pred -HHhhCCeEEEecCCC
Confidence 135799999765543
No 474
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.84 E-value=87 Score=24.60 Aligned_cols=41 Identities=15% Similarity=-0.016 Sum_probs=28.0
Q ss_pred cCCCeEEEecCCCchhHHHHHhh---cCCeEEEEeCCh-hHHHHH
Q 027388 83 RRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAE-GSIEDC 123 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~---~~~~~~gvD~s~-~~~~~a 123 (224)
..++.||=.||..|+++..++.. .+..|+++--+- .|-+.+
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~ 49 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLA 49 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHH
Confidence 35678999999999988888753 444666665443 344444
No 475
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=58.83 E-value=50 Score=26.86 Aligned_cols=31 Identities=16% Similarity=0.063 Sum_probs=23.4
Q ss_pred CchhHHHHHhhcCCeEEEEeCChhHHHHHHH
Q 027388 95 KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125 (224)
Q Consensus 95 ~G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~ 125 (224)
.|..+.++++....++++++.++...+.+++
T Consensus 156 vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~ 186 (324)
T cd08291 156 LGRMLVRLCKADGIKVINIVRRKEQVDLLKK 186 (324)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 3556666766666689999999988888865
No 476
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=58.16 E-value=30 Score=23.19 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=30.0
Q ss_pred ccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388 174 AMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH 220 (224)
Q Consensus 174 ~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g 220 (224)
++.|. +.++..+.+..+....+ |.++++.-....++..++..|
T Consensus 4 vLIHY--p~~d~~~~l~~La~~t~--~~~ifTfAP~T~~L~~m~~iG 46 (97)
T PF07109_consen 4 VLIHY--PAEDAAQMLAHLASRTR--GSLIFTFAPRTPLLALMHAIG 46 (97)
T ss_pred eEecc--CHHHHHHHHHHHHHhcc--CcEEEEECCCCHHHHHHHHHh
Confidence 34454 67888888888887765 688888666666666665554
No 477
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=57.69 E-value=85 Score=24.17 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=23.9
Q ss_pred CCCeEEEecCCC-ch-hHHHHHhhcCCeEEEEeCC
Q 027388 84 RGDVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIA 116 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~-~~~~l~~~~~~~~~gvD~s 116 (224)
...+|+=+|||. |. .+..++..+..+++.+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 567899999985 44 3344444577789999987
No 478
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=57.66 E-value=90 Score=28.97 Aligned_cols=116 Identities=14% Similarity=-0.036 Sum_probs=64.5
Q ss_pred CeEEEecCCCchhHH-HHHh-hcCCeEEEEeCChhHHHHHHHhccCCcccccccccC--------CCCeeEEeccccccc
Q 027388 86 DVVLDLACGKGGDLI-KWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF--------SFPARLICGDCYEVH 155 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~-~l~~-~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~--------~~~v~~~~~d~~~~~ 155 (224)
.+|.=||+|+=+..+ .++. .....|+.+|.+++.++.+..++...-..-.+...+ ..++++. .|+.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~--- 380 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDYR--- 380 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CChH---
Confidence 468888887722222 2222 345689999999999888776643100000000000 0112211 1211
Q ss_pred cccccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCC--hHHHHHHh
Q 027388 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD--ANVIIKKL 216 (224)
Q Consensus 156 ~~~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~--~~~~~~~~ 216 (224)
.....|+|+=. +++..+-..+++.++-++++|+.+|.-+|.. ...|.+.+
T Consensus 381 ------~~~~adlViEa-----v~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~ 432 (699)
T TIGR02440 381 ------GFKDVDIVIEA-----VFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAA 432 (699)
T ss_pred ------HhccCCEEEEe-----ccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhc
Confidence 13567777632 3334577889999999999999888876553 34444433
No 479
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=57.51 E-value=55 Score=27.49 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=27.7
Q ss_pred hcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHH
Q 027388 82 ARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRT 125 (224)
Q Consensus 82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~ 125 (224)
..++.+||=.|+|. |..+..+++.... .+++++.++...+.+++
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~ 246 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE 246 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 45667777667643 3344445544444 78999988886666655
No 480
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=57.00 E-value=45 Score=21.30 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=17.4
Q ss_pred cCCCeEEEecCCCchhHH-HHH--hhcCCeEEEEeCC
Q 027388 83 RRGDVVLDLACGKGGDLI-KWD--KAKIGYYVGIDIA 116 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~-~l~--~~~~~~~~gvD~s 116 (224)
..+++||=|||.+|.=+. .++ .......+||-+.
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 456899999999984222 122 1244567777653
No 481
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=56.91 E-value=74 Score=26.05 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=51.3
Q ss_pred hcCCCeEEEecCCC-chhHHHHHhhcC-CeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccc
Q 027388 82 ARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159 (224)
Q Consensus 82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~-~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 159 (224)
..++.+||=.|+|. |..+..+++... ..+++++.++.....+++.-. ..-+.....+.... ....
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~------------~~~v~~~~~~~~~~-i~~~ 230 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGA------------THTVNSAKGDAIEQ-VLEL 230 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC------------CceeccccccHHHH-HHHH
Confidence 34566666566532 334444554444 678889998877776664311 10011111111000 0000
Q ss_pred cCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEE
Q 027388 160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG 204 (224)
Q Consensus 160 ~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~ 204 (224)
. ....+|+++..- . . ...+..+.+.|+++|.++.
T Consensus 231 ~-~~~~~d~vld~~--g----~----~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 231 T-DGRGVDVVIEAV--G----I----PATFELCQELVAPGGHIAN 264 (345)
T ss_pred h-CCCCCCEEEECC--C----C----HHHHHHHHHhccCCcEEEE
Confidence 0 235689887432 1 1 1245677789999998875
No 482
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=56.35 E-value=1.1e+02 Score=24.90 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=16.7
Q ss_pred ecCCC-chhHHHHHhh-cCCeEEEEeCChhHH
Q 027388 91 LACGK-GGDLIKWDKA-KIGYYVGIDIAEGSI 120 (224)
Q Consensus 91 iGcG~-G~~~~~l~~~-~~~~~~gvD~s~~~~ 120 (224)
||+|. |.....++.. ...+++.+|+++...
T Consensus 4 IGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~ 35 (300)
T cd01339 4 IGAGNVGATLAQLLALKELGDVVLLDIVEGLP 35 (300)
T ss_pred ECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHH
Confidence 56655 3333222222 222899999998643
No 483
>PRK06436 glycerate dehydrogenase; Provisional
Probab=56.32 E-value=56 Score=26.78 Aligned_cols=100 Identities=16% Similarity=0.105 Sum_probs=57.9
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCC
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD 162 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 162 (224)
.+++|.=||.|. |.-...++.....+++++|.+... . . +.....++.++
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~--------~------------~--~~~~~~~l~el-------- 170 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN--------D------------G--ISSIYMEPEDI-------- 170 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc--------c------------C--cccccCCHHHH--------
Confidence 578888899886 554444544456689999976310 0 0 11001122211
Q ss_pred CCCeeEEEEccccccccCCHHHHHH-HHHHHHhhccCCeEEEEE----eCChHHHHHHhhhc
Q 027388 163 DAPFDICSCQFAMHYSWSTEARARR-ALANVSALLRPGGTFIGT----MPDANVIIKKLREE 219 (224)
Q Consensus 163 ~~~~D~i~~~~~l~~~~~~~~~~~~-~l~~~~~~lk~gG~li~~----~~~~~~~~~~~~~~ 219 (224)
....|+|++...+. ++... +-......+|||.+|+-. .-+.+.+.+.+++.
T Consensus 171 l~~aDiv~~~lp~t------~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g 226 (303)
T PRK06436 171 MKKSDFVLISLPLT------DETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNH 226 (303)
T ss_pred HhhCCEEEECCCCC------chhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 25679998776543 12222 235677788997666632 34677888888754
No 484
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=56.09 E-value=27 Score=28.91 Aligned_cols=46 Identities=28% Similarity=0.384 Sum_probs=34.9
Q ss_pred hhcCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHh
Q 027388 81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTR 126 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~ 126 (224)
...++.+||=.|+|. |..+..+++....+++++|.++..++.+++.
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 346688999999865 6566666666556899999999988888653
No 485
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=55.59 E-value=62 Score=26.46 Aligned_cols=42 Identities=26% Similarity=0.112 Sum_probs=27.4
Q ss_pred CCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHH
Q 027388 84 RGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRT 125 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~ 125 (224)
++.+||=.|+|. |..+..+++.... .++.++.++...+.+++
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 206 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK 206 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 566777667654 5555566655444 68888888877776655
No 486
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=54.29 E-value=81 Score=22.81 Aligned_cols=102 Identities=15% Similarity=0.060 Sum_probs=55.5
Q ss_pred EEEecCCCchhHHHHH-hhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccCCCCCe
Q 027388 88 VLDLACGKGGDLIKWD-KAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF 166 (224)
Q Consensus 88 iLDiGcG~G~~~~~l~-~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 166 (224)
|.=+|+|.+..+.... .....+|+....+++.++..++......+. ....+..++.+ ..|+.+. -...
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~--~~~~l~~~i~~-t~dl~~a--------~~~a 70 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYL--PGIKLPENIKA-TTDLEEA--------LEDA 70 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTS--TTSBEETTEEE-ESSHHHH--------HTT-
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCC--CCcccCccccc-ccCHHHH--------hCcc
Confidence 4557777766554332 235568999999998887777654311000 00111222322 2332211 2467
Q ss_pred eEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 167 DICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 167 D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
|+|+..-.. .....+++++...++++-.+++.+.
T Consensus 71 d~IiiavPs-------~~~~~~~~~l~~~l~~~~~ii~~~K 104 (157)
T PF01210_consen 71 DIIIIAVPS-------QAHREVLEQLAPYLKKGQIIISATK 104 (157)
T ss_dssp SEEEE-S-G-------GGHHHHHHHHTTTSHTT-EEEETS-
T ss_pred cEEEecccH-------HHHHHHHHHHhhccCCCCEEEEecC
Confidence 888754332 3457889999999988877776543
No 487
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=54.07 E-value=99 Score=25.82 Aligned_cols=90 Identities=14% Similarity=0.042 Sum_probs=51.3
Q ss_pred cCCCeEEEecCCC-chhHHHHHhhcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccccccC
Q 027388 83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161 (224)
Q Consensus 83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 161 (224)
-.+++|.=||.|. |.-....+.....+|++.+......+.+... + +. ..++.+.
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~--------------G--~~--v~sl~Ea------- 68 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKAD--------------G--FE--VMSVSEA------- 68 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHc--------------C--CE--ECCHHHH-------
Confidence 3678899998875 4333333334455787776444333333221 1 11 1232221
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHH-HHHHhhccCCeEEEEE
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRAL-ANVSALLRPGGTFIGT 205 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l-~~~~~~lk~gG~li~~ 205 (224)
....|+|+..... +....++ ..+...|++|.+|+++
T Consensus 69 -ak~ADVV~llLPd-------~~t~~V~~~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 69 -VRTAQVVQMLLPD-------EQQAHVYKAEVEENLREGQMLLFS 105 (335)
T ss_pred -HhcCCEEEEeCCC-------hHHHHHHHHHHHhcCCCCCEEEEC
Confidence 3567999876542 2224444 5789999999999875
No 488
>PRK08339 short chain dehydrogenase; Provisional
Probab=54.05 E-value=74 Score=25.05 Aligned_cols=81 Identities=12% Similarity=0.077 Sum_probs=47.4
Q ss_pred CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc-cc
Q 027388 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-KV 159 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 159 (224)
.++++|=.|++.| ++..+++ ....+|+.++.+...++.+.+.+.. ....++.++.+|+.+...- ..
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---------~~~~~~~~~~~Dv~~~~~i~~~ 76 (263)
T PRK08339 7 SGKLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKS---------ESNVDVSYIVADLTKREDLERT 76 (263)
T ss_pred CCCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---------hcCCceEEEEecCCCHHHHHHH
Confidence 4677888887665 4444433 2455899999988776665554431 1123477888888764210 00
Q ss_pred c---CCCCCeeEEEEccc
Q 027388 160 L---ADDAPFDICSCQFA 174 (224)
Q Consensus 160 ~---~~~~~~D~i~~~~~ 174 (224)
. ...+..|+++.+..
T Consensus 77 ~~~~~~~g~iD~lv~nag 94 (263)
T PRK08339 77 VKELKNIGEPDIFFFSTG 94 (263)
T ss_pred HHHHHhhCCCcEEEECCC
Confidence 0 01256898886543
No 489
>PRK10537 voltage-gated potassium channel; Provisional
Probab=53.95 E-value=1.4e+02 Score=25.53 Aligned_cols=105 Identities=14% Similarity=0.045 Sum_probs=57.0
Q ss_pred CeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-ccccC
Q 027388 86 DVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVLA 161 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~ 161 (224)
..++=+|+| ..+..+++ .....++.+|.+. .+ +.. .....++.+|..+... ...
T Consensus 241 ~HvII~G~g--~lg~~v~~~L~~~g~~vvVId~d~--~~---~~~-------------~~g~~vI~GD~td~e~L~~A-- 298 (393)
T PRK10537 241 DHFIICGHS--PLAINTYLGLRQRGQAVTVIVPLG--LE---HRL-------------PDDADLIPGDSSDSAVLKKA-- 298 (393)
T ss_pred CeEEEECCC--hHHHHHHHHHHHCCCCEEEEECch--hh---hhc-------------cCCCcEEEeCCCCHHHHHhc--
Confidence 445555554 45554443 3345788888652 11 111 1235688999865431 111
Q ss_pred CCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEEeCChHHHHHHhhhcc
Q 027388 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREEH 220 (224)
Q Consensus 162 ~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~~~~~~~~~~~~~~~g 220 (224)
.-+..+.|++.. +.+.....+-...+.+.|+..++....+.+ -.+.+++.|
T Consensus 299 gI~~A~aVI~~t-------~dD~~Nl~ivL~ar~l~p~~kIIa~v~~~~-~~~~L~~~G 349 (393)
T PRK10537 299 GAARARAILALR-------DNDADNAFVVLAAKEMSSDVKTVAAVNDSK-NLEKIKRVH 349 (393)
T ss_pred CcccCCEEEEcC-------CChHHHHHHHHHHHHhCCCCcEEEEECCHH-HHHHHHhcC
Confidence 235677776532 112333344455677788888888776644 355566655
No 490
>PRK07904 short chain dehydrogenase; Provisional
Probab=53.82 E-value=64 Score=25.27 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=46.8
Q ss_pred cCCCeEEEecCCCchhHHHHHh----hcCCeEEEEeCChhH-HHHHHHhccCCcccccccccCCCCeeEEecccccccc-
Q 027388 83 RRGDVVLDLACGKGGDLIKWDK----AKIGYYVGIDIAEGS-IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL- 156 (224)
Q Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~----~~~~~~~gvD~s~~~-~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~- 156 (224)
..+++||=.|++.| ++..+++ .+..+|+.++-+... ++.+.+.+.. ....++.++.+|+.+...
T Consensus 6 ~~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~---------~~~~~v~~~~~D~~~~~~~ 75 (253)
T PRK07904 6 GNPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKA---------AGASSVEVIDFDALDTDSH 75 (253)
T ss_pred CCCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHh---------cCCCceEEEEecCCChHHH
Confidence 46678998998655 6655553 233588888887654 5544443331 012257888999875431
Q ss_pred ----ccccCCCCCeeEEEEcc
Q 027388 157 ----DKVLADDAPFDICSCQF 173 (224)
Q Consensus 157 ----~~~~~~~~~~D~i~~~~ 173 (224)
.... ..+..|+++.+.
T Consensus 76 ~~~~~~~~-~~g~id~li~~a 95 (253)
T PRK07904 76 PKVIDAAF-AGGDVDVAIVAF 95 (253)
T ss_pred HHHHHHHH-hcCCCCEEEEee
Confidence 1111 125799887654
No 491
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=53.68 E-value=1.2e+02 Score=25.12 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=28.2
Q ss_pred hcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHH
Q 027388 82 ARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRT 125 (224)
Q Consensus 82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~ 125 (224)
..++.+||=.|+|. |..+..+++.... .+++++.++...+.+++
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~ 226 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ 226 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 45677777777643 3344445544443 58899988888888754
No 492
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=53.65 E-value=42 Score=28.05 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=33.8
Q ss_pred hhcCCCeEEEecCCC-chhHHHHHhhcCC-eEEEEeCChhHHHHHHHh
Q 027388 81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTR 126 (224)
Q Consensus 81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~ 126 (224)
...++.+||=.|+|. |..+..+++.... +++++|.++...+.+++.
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~ 229 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL 229 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh
Confidence 346788888888864 5556666655554 799999999988888654
No 493
>PRK06172 short chain dehydrogenase; Provisional
Probab=53.57 E-value=72 Score=24.68 Aligned_cols=80 Identities=14% Similarity=-0.039 Sum_probs=47.4
Q ss_pred CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-ccc
Q 027388 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKV 159 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 159 (224)
.++++|=.|++.| ++..++. ....+++.++-++..++...+.+. ....++.++.+|+.+... ...
T Consensus 6 ~~k~ilItGas~~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~----------~~~~~~~~~~~D~~~~~~i~~~ 74 (253)
T PRK06172 6 SGKVALVTGGAAG-IGRATALAFAREGAKVVVADRDAAGGEETVALIR----------EAGGEALFVACDVTRDAEVKAL 74 (253)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH----------hcCCceEEEEcCCCCHHHHHHH
Confidence 4678888887554 4444433 244589999988876665554443 113347888888875321 000
Q ss_pred ----cCCCCCeeEEEEccc
Q 027388 160 ----LADDAPFDICSCQFA 174 (224)
Q Consensus 160 ----~~~~~~~D~i~~~~~ 174 (224)
....+.+|+|+.+..
T Consensus 75 ~~~~~~~~g~id~li~~ag 93 (253)
T PRK06172 75 VEQTIAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHHHHHhCCCCEEEECCC
Confidence 001246799987654
No 494
>PRK08267 short chain dehydrogenase; Provisional
Probab=53.55 E-value=72 Score=24.84 Aligned_cols=76 Identities=13% Similarity=-0.064 Sum_probs=45.1
Q ss_pred CeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccccc-ccc-
Q 027388 86 DVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-KVL- 160 (224)
Q Consensus 86 ~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~- 160 (224)
+++|=.|++.| ++..+++ ....+|++++.+...++....... ..++.++.+|+.+...- ...
T Consensus 2 k~vlItGasg~-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~------------~~~~~~~~~D~~~~~~v~~~~~ 68 (260)
T PRK08267 2 KSIFITGAASG-IGRATALLFAAEGWRVGAYDINEAGLAALAAELG------------AGNAWTGALDVTDRAAWDAALA 68 (260)
T ss_pred cEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc------------CCceEEEEecCCCHHHHHHHHH
Confidence 35777776644 5544443 245589999988877666654432 23478889998764310 000
Q ss_pred ---CC-CCCeeEEEEccc
Q 027388 161 ---AD-DAPFDICSCQFA 174 (224)
Q Consensus 161 ---~~-~~~~D~i~~~~~ 174 (224)
.. .+.+|+++.+..
T Consensus 69 ~~~~~~~~~id~vi~~ag 86 (260)
T PRK08267 69 DFAAATGGRLDVLFNNAG 86 (260)
T ss_pred HHHHHcCCCCCEEEECCC
Confidence 00 357899886653
No 495
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=53.45 E-value=41 Score=28.10 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=24.2
Q ss_pred CCCeEEEecCCC-chh-HHHHHhhcCCeEEEEeCCh
Q 027388 84 RGDVVLDLACGK-GGD-LIKWDKAKIGYYVGIDIAE 117 (224)
Q Consensus 84 ~~~~iLDiGcG~-G~~-~~~l~~~~~~~~~gvD~s~ 117 (224)
...+||=+|||. |.. +..|+..+.++++.+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 567899999984 443 3344445777999999863
No 496
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=53.17 E-value=20 Score=26.38 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhccCCeEEEEEeC
Q 027388 183 ARARRALANVSALLRPGGTFIGTMP 207 (224)
Q Consensus 183 ~~~~~~l~~~~~~lk~gG~li~~~~ 207 (224)
+--..+++-+.+.|.|||.|+++..
T Consensus 63 ~~E~~l~~~~~~~l~pg~~lfVeY~ 87 (170)
T PF06557_consen 63 PLEDELYKLFSRYLEPGGRLFVEYV 87 (170)
T ss_dssp HHHHHHHHHHHTT----SEEEEE-T
T ss_pred hHHHHHHHHHHHHhhhcCeEEEEEe
Confidence 3446678889999999999999743
No 497
>PLN02256 arogenate dehydrogenase
Probab=52.97 E-value=1.3e+02 Score=24.72 Aligned_cols=41 Identities=10% Similarity=-0.019 Sum_probs=25.0
Q ss_pred HHHHHhhcCCCeEEEecCCC-ch-hHHHHHhhcCCeEEEEeCCh
Q 027388 76 VLVQLYARRGDVVLDLACGK-GG-DLIKWDKAKIGYYVGIDIAE 117 (224)
Q Consensus 76 ~~~~~~~~~~~~iLDiGcG~-G~-~~~~l~~~~~~~~~gvD~s~ 117 (224)
+.++.+.....+|.=||+|. |. ++..+. ....+++++|.+.
T Consensus 27 ~~~~~~~~~~~kI~IIG~G~mG~slA~~L~-~~G~~V~~~d~~~ 69 (304)
T PLN02256 27 LQEELEKSRKLKIGIVGFGNFGQFLAKTFV-KQGHTVLATSRSD 69 (304)
T ss_pred HhHhhccCCCCEEEEEeeCHHHHHHHHHHH-hCCCEEEEEECcc
Confidence 33444455667888899874 22 333332 2334799999886
No 498
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=52.89 E-value=1.3e+02 Score=24.88 Aligned_cols=98 Identities=18% Similarity=0.254 Sum_probs=53.5
Q ss_pred hcCCCeEEEecCC-CchhHHHHHhhcCC-eEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEeccccccc--cc
Q 027388 82 ARRGDVVLDLACG-KGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LD 157 (224)
Q Consensus 82 ~~~~~~iLDiGcG-~G~~~~~l~~~~~~-~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~ 157 (224)
..++.+||=.|+| .|..+..+++.... .+++++.++...+.++. +. . ..++...-.... ..
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~-~g-------------~-~~vv~~~~~~~~~~l~ 244 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR-FG-------------A-THTVNASEDDAVEAVR 244 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-hC-------------C-eEEeCCCCccHHHHHH
Confidence 4567778777774 35555666655444 48899988887777643 22 0 111111100100 00
Q ss_pred cccCCCCCeeEEEEccccccccCCHHHHHHHHHHHHhhccCCeEEEEE
Q 027388 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205 (224)
Q Consensus 158 ~~~~~~~~~D~i~~~~~l~~~~~~~~~~~~~l~~~~~~lk~gG~li~~ 205 (224)
.. .....+|+++..-. . ...+....+.|+++|.++..
T Consensus 245 ~~-~~~~~vd~vld~~~------~----~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 245 DL-TDGRGADYAFEAVG------R----AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred HH-cCCCCCCEEEEcCC------C----hHHHHHHHHHhhcCCeEEEE
Confidence 00 02356898874321 0 13456778888999988753
No 499
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=52.76 E-value=97 Score=23.72 Aligned_cols=66 Identities=9% Similarity=-0.195 Sum_probs=38.4
Q ss_pred CCCeEEEecCCCchhH-HHHHhhcCCeEEEEeCChh--HHHHHHHhccCCcccccccccCCCCeeEEecccccccccccc
Q 027388 84 RGDVVLDLACGKGGDL-IKWDKAKIGYYVGIDIAEG--SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~-~~l~~~~~~~~~gvD~s~~--~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 160 (224)
.+++||=+|.|.-... ...+....+.++.+++... ..+.+. ..++.++..+.....+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~----------------~~~i~~~~~~~~~~dl---- 67 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAE----------------QGGITWLARCFDADIL---- 67 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHH----------------cCCEEEEeCCCCHHHh----
Confidence 5779999998864322 2222245568888876543 222221 1147777777653332
Q ss_pred CCCCCeeEEEEc
Q 027388 161 ADDAPFDICSCQ 172 (224)
Q Consensus 161 ~~~~~~D~i~~~ 172 (224)
..+|+|++.
T Consensus 68 ---~~~~lVi~a 76 (205)
T TIGR01470 68 ---EGAFLVIAA 76 (205)
T ss_pred ---CCcEEEEEC
Confidence 468888765
No 500
>PRK07063 short chain dehydrogenase; Provisional
Probab=52.67 E-value=83 Score=24.50 Aligned_cols=82 Identities=11% Similarity=0.032 Sum_probs=48.4
Q ss_pred CCCeEEEecCCCchhHHHHHh---hcCCeEEEEeCChhHHHHHHHhccCCcccccccccCCCCeeEEecccccccc-ccc
Q 027388 84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKV 159 (224)
Q Consensus 84 ~~~~iLDiGcG~G~~~~~l~~---~~~~~~~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 159 (224)
.++++|=.|++.| ++..+++ ....+++.++.++..++...+.+.. .....++.++.+|+.+... ...
T Consensus 6 ~~k~vlVtGas~g-IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~--------~~~~~~~~~~~~Dl~~~~~~~~~ 76 (260)
T PRK07063 6 AGKVALVTGAAQG-IGAAIARAFAREGAAVALADLDAALAERAAAAIAR--------DVAGARVLAVPADVTDAASVAAA 76 (260)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------ccCCceEEEEEccCCCHHHHHHH
Confidence 4678888887654 4554443 3456899999888777666555431 0113347788888865321 000
Q ss_pred c----CCCCCeeEEEEccc
Q 027388 160 L----ADDAPFDICSCQFA 174 (224)
Q Consensus 160 ~----~~~~~~D~i~~~~~ 174 (224)
. ...+.+|+++.+..
T Consensus 77 ~~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 77 VAAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHHHHHhCCCcEEEECCC
Confidence 0 01257898887653
Done!