Query 027389
Match_columns 224
No_of_seqs 133 out of 503
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 09:14:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3208 SNARE protein GS28 [In 100.0 7.6E-53 1.6E-57 345.7 25.7 221 1-223 1-231 (231)
2 KOG3251 Golgi SNAP receptor co 100.0 3.3E-30 7.2E-35 212.3 24.1 198 8-222 2-211 (213)
3 KOG1666 V-SNARE [Intracellular 100.0 1.4E-29 3.1E-34 207.7 22.7 206 5-224 3-218 (220)
4 PF12352 V-SNARE_C: Snare regi 99.6 1.6E-15 3.4E-20 104.8 7.4 66 134-199 1-66 (66)
5 PF03908 Sec20: Sec20; InterP 99.1 2.2E-09 4.7E-14 78.9 10.2 81 140-220 7-87 (92)
6 PF05008 V-SNARE: Vesicle tran 98.5 1.7E-06 3.6E-11 61.5 10.7 76 16-103 3-78 (79)
7 KOG0812 SNARE protein SED5/Syn 98.1 0.0024 5.3E-08 55.6 22.9 210 12-222 45-308 (311)
8 KOG3202 SNARE protein TLG1/Syn 97.9 0.0084 1.8E-07 51.3 20.9 197 4-203 5-214 (235)
9 PF09753 Use1: Membrane fusion 96.5 0.46 9.9E-06 40.9 19.4 87 133-222 154-247 (251)
10 PF00957 Synaptobrevin: Synapt 96.3 0.072 1.6E-06 38.4 9.8 63 141-203 3-65 (89)
11 KOG0860 Synaptobrevin/VAMP-lik 95.4 0.24 5.2E-06 37.7 9.4 84 140-223 28-115 (116)
12 KOG3385 V-SNARE [Intracellular 95.1 0.095 2.1E-06 39.8 6.6 82 138-222 32-116 (118)
13 KOG0809 SNARE protein TLG2/Syn 95.1 2.2 4.8E-05 37.6 19.6 211 4-217 56-295 (305)
14 PF04210 MtrG: Tetrahydrometha 94.0 0.2 4.3E-06 34.6 5.5 52 171-222 14-66 (70)
15 PF06008 Laminin_I: Laminin Do 92.9 5.8 0.00012 34.3 14.6 148 44-192 89-243 (264)
16 COG4064 MtrG Tetrahydromethano 91.9 0.54 1.2E-05 32.5 5.1 46 172-217 18-65 (75)
17 PF09177 Syntaxin-6_N: Syntaxi 91.3 4.5 9.7E-05 29.5 12.2 91 6-99 2-97 (97)
18 TIGR01149 mtrG N5-methyltetrah 91.2 0.82 1.8E-05 31.6 5.5 49 171-219 14-63 (70)
19 PRK01026 tetrahydromethanopter 91.1 0.79 1.7E-05 32.3 5.5 48 171-218 17-65 (77)
20 PRK09546 zntB zinc transporter 89.7 14 0.00031 32.8 18.8 50 47-104 151-200 (324)
21 PF01544 CorA: CorA-like Mg2+ 88.7 5.6 0.00012 34.0 10.3 28 46-73 118-145 (292)
22 KOG1666 V-SNARE [Intracellular 85.0 22 0.00049 30.0 17.4 166 14-195 5-182 (220)
23 KOG2129 Uncharacterized conser 83.9 18 0.00038 33.7 11.0 104 5-113 179-312 (552)
24 KOG3894 SNARE protein Syntaxin 82.5 20 0.00043 32.0 10.4 77 134-210 214-302 (316)
25 KOG2678 Predicted membrane pro 82.1 31 0.00067 29.4 13.8 85 133-217 142-231 (244)
26 smart00397 t_SNARE Helical reg 81.3 10 0.00022 24.6 6.6 55 138-192 9-63 (66)
27 PRK10884 SH3 domain-containing 81.2 24 0.00052 29.6 10.2 22 83-104 90-111 (206)
28 PF09889 DUF2116: Uncharacteri 81.2 5 0.00011 26.9 4.9 27 191-217 27-53 (59)
29 PF00957 Synaptobrevin: Synapt 80.7 18 0.00038 25.7 11.5 65 150-221 23-87 (89)
30 PF05739 SNARE: SNARE domain; 80.3 14 0.0003 24.2 7.3 59 141-199 4-62 (63)
31 PF03904 DUF334: Domain of unk 79.4 39 0.00084 28.8 16.0 53 155-220 113-165 (230)
32 PF10779 XhlA: Haemolysin XhlA 79.0 18 0.00039 24.8 7.6 23 200-222 48-70 (71)
33 PF08693 SKG6: Transmembrane a 78.6 0.97 2.1E-05 27.9 0.7 16 208-223 22-37 (40)
34 KOG3065 SNAP-25 (synaptosome-a 76.8 7.9 0.00017 34.0 6.2 55 142-196 80-134 (273)
35 TIGR00383 corA magnesium Mg(2+ 76.6 52 0.0011 28.8 18.0 49 49-104 145-193 (318)
36 PF10458 Val_tRNA-synt_C: Valy 72.8 26 0.00057 23.6 7.1 53 47-103 9-63 (66)
37 PF05478 Prominin: Prominin; 72.1 1.2E+02 0.0025 30.8 23.0 28 5-32 180-208 (806)
38 PF08113 CoxIIa: Cytochrome c 70.8 5.6 0.00012 23.5 2.6 12 211-222 13-24 (34)
39 PF12911 OppC_N: N-terminal TM 69.0 7.4 0.00016 25.1 3.3 24 191-214 4-27 (56)
40 PF01034 Syndecan: Syndecan do 67.8 1.7 3.7E-05 29.6 -0.0 12 213-224 27-38 (64)
41 PF14523 Syntaxin_2: Syntaxin- 65.3 48 0.001 23.8 9.9 49 19-67 6-58 (102)
42 COG0598 CorA Mg2+ and Co2+ tra 64.3 1E+02 0.0023 27.3 18.0 49 49-104 150-198 (322)
43 KOG0862 Synaptobrevin/VAMP-lik 63.4 76 0.0016 26.9 8.9 62 141-206 134-195 (216)
44 PRK09759 small toxic polypepti 62.7 7.4 0.00016 25.2 2.2 21 202-222 3-23 (50)
45 COG4068 Uncharacterized protei 62.1 13 0.00029 24.9 3.3 22 190-211 31-52 (64)
46 PHA02844 putative transmembran 61.5 12 0.00025 26.3 3.2 20 203-222 50-69 (75)
47 PF12669 P12: Virus attachment 61.5 5.8 0.00013 26.4 1.6 15 204-218 2-16 (58)
48 PHA02650 hypothetical protein; 58.9 14 0.0003 26.3 3.2 19 204-222 52-70 (81)
49 PF07798 DUF1640: Protein of u 58.3 98 0.0021 25.0 18.1 59 159-222 117-175 (177)
50 KOG0994 Extracellular matrix g 57.2 2.7E+02 0.0059 29.8 15.2 56 145-203 1584-1639(1758)
51 PRK09738 small toxic polypepti 57.0 8.7 0.00019 25.1 1.8 21 202-222 5-25 (52)
52 PF05084 GRA6: Granule antigen 55.8 16 0.00035 29.6 3.6 27 196-222 145-171 (215)
53 PF12575 DUF3753: Protein of u 55.6 16 0.00034 25.5 3.0 18 204-221 51-68 (72)
54 cd00193 t_SNARE Soluble NSF (N 55.6 48 0.001 20.9 5.4 49 142-190 7-55 (60)
55 PHA03164 hypothetical protein; 54.6 21 0.00045 25.2 3.5 32 191-222 47-81 (88)
56 PHA03054 IMV membrane protein; 54.6 18 0.0004 25.0 3.2 19 204-222 51-69 (72)
57 PF11395 DUF2873: Protein of u 54.2 23 0.0005 21.5 3.2 16 207-222 15-30 (43)
58 KOG0250 DNA repair protein RAD 54.0 2.9E+02 0.0062 29.1 15.9 60 49-113 319-378 (1074)
59 PF04799 Fzo_mitofusin: fzo-li 53.9 82 0.0018 25.7 7.4 22 47-68 114-135 (171)
60 PHA02819 hypothetical protein; 53.9 19 0.00041 25.0 3.2 19 204-222 49-67 (71)
61 PF06024 DUF912: Nucleopolyhed 53.9 7.8 0.00017 28.7 1.4 14 204-217 64-77 (101)
62 PF05008 V-SNARE: Vesicle tran 53.7 39 0.00084 23.2 4.9 47 47-97 33-79 (79)
63 PHA02975 hypothetical protein; 53.4 20 0.00043 24.7 3.2 19 204-222 47-65 (69)
64 PF03993 DUF349: Domain of Unk 53.3 68 0.0015 21.6 8.7 50 9-73 2-51 (77)
65 COG1579 Zn-ribbon protein, pos 53.2 1.5E+02 0.0032 25.6 13.0 17 7-23 54-70 (239)
66 PF06692 MNSV_P7B: Melon necro 52.7 16 0.00035 24.1 2.6 23 201-223 11-33 (61)
67 PHA02955 hypothetical protein; 52.2 14 0.0003 31.2 2.8 21 203-223 181-201 (213)
68 COG4640 Predicted membrane pro 51.7 11 0.00023 34.9 2.1 21 204-224 53-73 (465)
69 PF08172 CASP_C: CASP C termin 51.1 18 0.0004 31.2 3.5 27 197-223 215-241 (248)
70 PHA02692 hypothetical protein; 51.1 23 0.00049 24.6 3.2 15 208-222 53-67 (70)
71 TIGR01195 oadG_fam sodium pump 49.1 23 0.0005 25.2 3.2 17 205-221 12-28 (82)
72 PF08317 Spc7: Spc7 kinetochor 48.7 2E+02 0.0043 25.7 15.3 32 44-75 73-104 (325)
73 PTZ00234 variable surface prot 48.7 13 0.00029 34.7 2.4 18 85-102 148-165 (433)
74 KOG0810 SNARE protein Syntaxin 48.4 2E+02 0.0043 25.6 20.4 29 165-193 230-258 (297)
75 cd07643 I-BAR_IMD_MIM Inverse 48.4 1.8E+02 0.0038 25.0 12.8 27 5-31 22-48 (231)
76 PRK14750 kdpF potassium-transp 48.0 36 0.00079 19.3 3.1 18 204-221 5-22 (29)
77 PF05545 FixQ: Cbb3-type cytoc 47.4 32 0.00069 21.7 3.4 6 218-223 26-31 (49)
78 PF09889 DUF2116: Uncharacteri 46.5 52 0.0011 22.0 4.3 28 195-222 28-55 (59)
79 PF12495 Vip3A_N: Vegetative i 45.2 89 0.0019 24.3 6.0 69 138-210 49-128 (177)
80 PF11190 DUF2976: Protein of u 44.8 24 0.00052 25.6 2.7 22 203-224 62-83 (87)
81 PRK06287 cobalt transport prot 42.6 26 0.00057 26.2 2.7 19 204-222 79-97 (107)
82 PF07926 TPR_MLP1_2: TPR/MLP1/ 42.3 1.5E+02 0.0034 22.6 16.0 124 12-173 3-126 (132)
83 PF13800 Sigma_reg_N: Sigma fa 42.3 39 0.00085 24.3 3.6 11 191-201 4-14 (96)
84 PF04277 OAD_gamma: Oxaloaceta 41.8 33 0.00071 23.7 3.0 15 205-219 9-23 (79)
85 PF08641 Mis14: Kinetochore pr 41.3 1.7E+02 0.0036 22.7 7.5 27 47-73 38-64 (139)
86 PF12729 4HB_MCP_1: Four helix 41.0 1.6E+02 0.0034 22.3 13.6 56 42-100 75-130 (181)
87 PF13800 Sigma_reg_N: Sigma fa 41.0 51 0.0011 23.7 4.1 13 194-206 3-15 (96)
88 PF09006 Surfac_D-trimer: Lung 40.5 71 0.0015 20.3 4.0 25 8-32 2-26 (46)
89 PRK10856 cytoskeletal protein 40.2 22 0.00048 32.0 2.4 28 195-222 103-133 (331)
90 PF06024 DUF912: Nucleopolyhed 40.1 27 0.00059 25.8 2.5 16 205-220 68-83 (101)
91 COG4575 ElaB Uncharacterized c 39.8 1.6E+02 0.0035 22.1 7.3 50 15-65 11-60 (104)
92 COG0690 SecE Preprotein transl 39.5 85 0.0019 21.7 4.8 44 177-220 16-60 (73)
93 PF12352 V-SNARE_C: Snare regi 39.2 1.1E+02 0.0024 20.1 6.2 13 139-151 34-46 (66)
94 PF15431 TMEM190: Transmembran 39.0 46 0.001 25.3 3.5 25 200-224 58-85 (134)
95 PF09755 DUF2046: Uncharacteri 38.9 2.3E+02 0.0051 25.3 8.5 64 46-114 226-289 (310)
96 PRK14759 potassium-transportin 38.9 60 0.0013 18.6 3.2 18 204-221 5-22 (29)
97 PF01848 HOK_GEF: Hok/gef fami 38.9 22 0.00047 22.3 1.5 18 205-222 3-20 (43)
98 PF10960 DUF2762: Protein of u 38.8 20 0.00044 24.9 1.5 17 207-223 12-28 (71)
99 PF07106 TBPIP: Tat binding pr 38.6 2E+02 0.0043 22.8 11.8 56 7-69 81-136 (169)
100 PF08776 VASP_tetra: VASP tetr 38.1 78 0.0017 19.5 3.8 26 85-111 10-35 (40)
101 PF13190 PDGLE: PDGLE domain 37.8 42 0.00091 24.1 3.1 22 203-224 66-87 (88)
102 TIGR02115 potass_kdpF K+-trans 37.4 47 0.001 18.5 2.5 16 206-221 2-17 (26)
103 COG4420 Predicted membrane pro 37.0 63 0.0014 26.8 4.3 45 146-190 15-59 (191)
104 PF06422 PDR_CDR: CDR ABC tran 36.7 37 0.00081 25.0 2.8 12 207-218 53-64 (103)
105 PF06040 Adeno_E3: Adenovirus 36.6 27 0.00059 26.6 2.0 14 204-217 90-103 (127)
106 KOG0862 Synaptobrevin/VAMP-lik 36.4 1E+02 0.0022 26.1 5.6 47 150-207 154-200 (216)
107 PF12711 Kinesin-relat_1: Kine 35.7 1.7E+02 0.0037 21.1 9.5 77 22-114 2-78 (86)
108 PHA02902 putative IMV membrane 35.6 54 0.0012 22.4 3.1 19 202-220 4-24 (70)
109 PF13997 YqjK: YqjK-like prote 35.4 1.5E+02 0.0033 20.5 5.7 50 161-214 2-51 (73)
110 PF03980 Nnf1: Nnf1 ; InterPr 35.1 1.8E+02 0.0039 21.3 7.7 24 47-70 28-51 (109)
111 KOG0933 Structural maintenance 35.1 5.6E+02 0.012 27.0 15.0 43 139-181 973-1016(1174)
112 PF01102 Glycophorin_A: Glycop 35.1 43 0.00093 25.8 2.9 10 204-213 72-81 (122)
113 PF08173 YbgT_YccB: Membrane b 34.9 75 0.0016 18.0 3.1 20 203-222 5-24 (28)
114 TIGR01294 P_lamban phospholamb 34.8 87 0.0019 19.8 3.7 23 198-220 26-48 (52)
115 PF06696 Strep_SA_rep: Strepto 34.5 84 0.0018 17.3 4.3 21 83-103 2-22 (25)
116 PF04880 NUDE_C: NUDE protein, 34.0 51 0.0011 26.8 3.3 50 50-102 4-53 (166)
117 smart00503 SynN Syntaxin N-ter 33.9 1.8E+02 0.004 21.0 12.6 66 5-70 4-74 (117)
118 PF04678 DUF607: Protein of un 33.2 2.3E+02 0.0049 23.0 7.1 53 150-202 38-90 (180)
119 KOG0994 Extracellular matrix g 33.2 6.6E+02 0.014 27.2 15.4 20 51-70 1466-1485(1758)
120 KOG2150 CCR4-NOT transcription 33.1 1.7E+02 0.0037 28.4 7.1 30 42-71 38-67 (575)
121 PRK14748 kdpF potassium-transp 32.6 87 0.0019 17.8 3.1 18 204-221 5-22 (29)
122 PF08802 CytB6-F_Fe-S: Cytochr 32.4 1.2E+02 0.0026 18.6 4.0 21 194-214 5-25 (39)
123 PF02932 Neur_chan_memb: Neuro 32.3 53 0.0011 25.4 3.2 20 202-221 218-237 (237)
124 PF09604 Potass_KdpF: F subuni 32.3 78 0.0017 17.4 2.9 17 205-221 2-18 (25)
125 PF10168 Nup88: Nuclear pore c 31.8 5.4E+02 0.012 25.8 16.7 61 8-70 561-621 (717)
126 PF04272 Phospholamban: Phosph 31.6 1.1E+02 0.0024 19.4 3.8 20 201-220 29-48 (52)
127 PF04508 Pox_A_type_inc: Viral 30.8 90 0.002 16.9 2.9 17 7-23 3-19 (23)
128 PRK02919 oxaloacetate decarbox 30.7 67 0.0014 22.9 3.1 16 205-220 15-30 (82)
129 COG5128 Transport protein part 30.4 3.1E+02 0.0067 22.5 8.7 70 138-209 30-102 (208)
130 TIGR02106 cyd_oper_ybgT cyd op 30.4 1E+02 0.0022 17.8 3.2 20 203-222 5-24 (30)
131 PF04226 Transgly_assoc: Trans 30.3 78 0.0017 20.0 3.1 19 206-224 30-48 (48)
132 PF08372 PRT_C: Plant phosphor 30.1 83 0.0018 25.3 3.9 26 148-173 62-87 (156)
133 PRK14749 hypothetical protein; 29.5 1.1E+02 0.0024 17.5 3.3 20 203-222 5-24 (30)
134 COG3462 Predicted membrane pro 29.2 67 0.0015 24.3 3.0 18 205-222 55-72 (117)
135 PF01519 DUF16: Protein of unk 29.1 2E+02 0.0044 21.4 5.5 33 166-198 64-96 (102)
136 PF13131 DUF3951: Protein of u 29.1 81 0.0018 20.5 3.0 16 207-222 12-27 (53)
137 TIGR03017 EpsF chain length de 29.1 4.5E+02 0.0097 24.0 11.1 23 7-29 217-239 (444)
138 PRK03814 oxaloacetate decarbox 29.1 74 0.0016 22.8 3.2 6 207-212 18-23 (85)
139 PHA02849 putative transmembran 29.0 66 0.0014 22.8 2.7 14 204-217 19-32 (82)
140 COG3763 Uncharacterized protei 28.6 85 0.0018 21.8 3.2 18 205-222 7-24 (71)
141 COG3883 Uncharacterized protei 28.5 4.1E+02 0.0088 23.3 12.6 64 48-114 40-105 (265)
142 COG1476 Predicted transcriptio 28.2 76 0.0016 21.9 2.9 34 180-213 19-52 (68)
143 KOG0976 Rho/Rac1-interacting s 28.1 6.9E+02 0.015 25.8 13.3 57 45-114 375-431 (1265)
144 PRK11281 hypothetical protein; 28.1 7.6E+02 0.016 26.3 14.3 51 134-184 128-178 (1113)
145 PRK13182 racA polar chromosome 27.9 3.3E+02 0.0072 22.1 8.0 56 45-104 88-143 (175)
146 PF15056 NRN1: Neuritin protei 27.6 31 0.00067 25.0 0.9 14 5-18 59-72 (89)
147 PF02936 COX4: Cytochrome c ox 27.0 82 0.0018 24.8 3.4 19 202-220 74-92 (142)
148 KOG4674 Uncharacterized conser 27.0 9.5E+02 0.021 27.1 15.7 194 5-198 238-462 (1822)
149 PF11657 Activator-TraM: Trans 26.7 3.2E+02 0.007 21.6 12.0 20 84-103 44-63 (144)
150 PF08114 PMP1_2: ATPase proteo 26.6 90 0.0019 19.4 2.7 16 205-220 15-30 (43)
151 PF07889 DUF1664: Protein of u 26.2 2.9E+02 0.0064 21.3 6.2 54 141-194 68-121 (126)
152 cd00922 Cyt_c_Oxidase_IV Cytoc 26.1 84 0.0018 24.6 3.3 18 202-219 74-91 (136)
153 PF11174 DUF2970: Protein of u 25.6 1E+02 0.0022 20.3 3.1 17 204-220 33-49 (56)
154 TIGR03752 conj_TIGR03752 integ 25.5 1.9E+02 0.0042 27.4 6.0 33 79-111 66-98 (472)
155 PF06072 Herpes_US9: Alphaherp 25.5 1.9E+02 0.0042 19.4 4.3 8 191-198 14-21 (60)
156 PF13870 DUF4201: Domain of un 25.3 3.5E+02 0.0077 21.5 12.5 96 6-104 7-102 (177)
157 PF10805 DUF2730: Protein of u 25.1 2.9E+02 0.0062 20.4 9.0 60 50-112 39-98 (106)
158 PF02167 Cytochrom_C1: Cytochr 25.1 79 0.0017 26.8 3.1 8 26-33 20-27 (219)
159 PF11298 DUF3099: Protein of u 25.1 1.4E+02 0.0031 20.7 3.9 27 194-220 12-38 (73)
160 PF15188 CCDC-167: Coiled-coil 25.1 64 0.0014 23.3 2.2 18 81-98 7-24 (85)
161 PF05399 EVI2A: Ectropic viral 25.0 65 0.0014 27.3 2.5 11 207-217 138-148 (227)
162 PF05644 Miff: Mitochondrial a 24.8 88 0.0019 27.1 3.4 47 166-223 199-245 (246)
163 PF09125 COX2-transmemb: Cytoc 24.6 1.7E+02 0.0037 17.7 4.5 21 201-221 14-34 (38)
164 PF10779 XhlA: Haemolysin XhlA 24.4 2.3E+02 0.0051 19.2 8.2 14 204-217 56-69 (71)
165 PF00523 Fusion_gly: Fusion gl 24.3 24 0.00053 33.6 -0.1 26 6-31 49-74 (490)
166 PF09755 DUF2046: Uncharacteri 24.1 5.3E+02 0.011 23.1 11.8 91 8-103 138-246 (310)
167 PF09753 Use1: Membrane fusion 23.9 4.5E+02 0.0098 22.3 10.1 50 135-184 171-224 (251)
168 COG3630 OadG Na+-transporting 23.6 1.1E+02 0.0024 22.0 3.2 16 205-220 15-30 (84)
169 PF13571 DUF4133: Domain of un 23.6 99 0.0022 22.8 3.0 15 207-221 24-38 (96)
170 KOG4782 Predicted membrane pro 23.4 90 0.0019 23.0 2.7 20 203-222 59-78 (108)
171 cd07669 BAR_SNX33 The Bin/Amph 23.3 1.9E+02 0.0042 24.3 5.0 53 48-104 7-59 (207)
172 PF02009 Rifin_STEVOR: Rifin/s 23.3 82 0.0018 28.0 3.0 16 207-222 264-279 (299)
173 KOG3443 Uncharacterized conser 23.1 4.2E+02 0.0091 21.7 8.1 60 150-209 21-82 (184)
174 PF04912 Dynamitin: Dynamitin 23.1 5.8E+02 0.012 23.2 12.5 62 135-199 323-384 (388)
175 cd07668 BAR_SNX9 The Bin/Amphi 22.9 2E+02 0.0043 24.3 5.0 53 48-104 7-59 (210)
176 PF13373 DUF2407_C: DUF2407 C- 22.6 96 0.0021 24.4 3.0 22 201-222 89-110 (140)
177 PF11146 DUF2905: Protein of u 22.1 1.3E+02 0.0029 20.4 3.2 22 203-224 3-24 (64)
178 PF08135 EPV_E5: Major transfo 22.0 1E+02 0.0022 19.1 2.3 8 214-221 25-32 (44)
179 PHA03010 hypothetical protein; 21.9 1.2E+02 0.0025 28.1 3.7 27 195-222 499-525 (546)
180 PF03302 VSP: Giardia variant- 21.8 58 0.0013 30.0 1.9 10 186-195 363-372 (397)
181 PF02532 PsbI: Photosystem II 21.7 1.9E+02 0.0042 17.3 3.4 13 203-215 5-17 (36)
182 PF04799 Fzo_mitofusin: fzo-li 21.2 4.6E+02 0.01 21.4 8.4 20 45-64 101-120 (171)
183 COG4192 Signal transduction hi 21.2 5E+02 0.011 25.1 7.7 65 135-199 250-328 (673)
184 PF09813 Coiled-coil_56: Coile 21.0 1.8E+02 0.0038 21.7 3.9 21 201-221 49-69 (100)
185 PHA02662 ORF131 putative membr 21.0 1.6E+02 0.0035 25.1 4.1 16 203-218 187-202 (226)
186 PLN02943 aminoacyl-tRNA ligase 21.0 4E+02 0.0086 27.7 7.8 26 79-104 924-949 (958)
187 KOG3065 SNAP-25 (synaptosome-a 20.7 2.4E+02 0.0053 24.8 5.4 52 143-194 220-271 (273)
188 PF09574 DUF2374: Protein of 20.7 1.6E+02 0.0036 18.2 3.0 15 202-216 18-32 (42)
189 PF06898 YqfD: Putative stage 20.6 1E+02 0.0022 28.2 3.2 19 197-215 82-100 (385)
190 PF05384 DegS: Sensor protein 20.5 4.5E+02 0.0099 21.1 13.0 102 44-164 29-131 (159)
191 PF15168 TRIQK: Triple QxxK/R 20.5 1.5E+02 0.0032 21.0 3.2 14 204-217 53-66 (79)
192 PF06084 Cytomega_TRL10: Cytom 20.4 50 0.0011 25.3 0.9 9 209-217 65-73 (150)
193 cd07670 BAR_SNX18 The Bin/Amph 20.1 3.8E+02 0.0082 22.6 6.1 53 48-104 7-59 (207)
194 PF03670 UPF0184: Uncharacteri 20.1 3.4E+02 0.0074 19.5 6.9 20 48-67 28-47 (83)
195 COG1033 Predicted exporters of 20.1 1.4E+02 0.003 30.0 4.1 44 180-223 175-218 (727)
196 PF09304 Cortex-I_coil: Cortex 20.1 3.9E+02 0.0084 20.1 5.9 41 140-180 11-51 (107)
197 PF09771 Tmemb_18A: Transmembr 20.1 1.7E+02 0.0036 22.7 3.7 43 170-223 8-50 (125)
No 1
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-53 Score=345.67 Aligned_cols=221 Identities=50% Similarity=0.673 Sum_probs=194.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---------CCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027389 1 MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSK---------GSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSS 71 (224)
Q Consensus 1 ~~~~~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~---------~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~ 71 (224)
|..+++||+||++||+||+++|.||.+|++++++. |-..++..+++++.||+.+|+++++++|+|..+...
T Consensus 1 m~~~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~~~~s 80 (231)
T KOG3208|consen 1 MGSSSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMNDCASS 80 (231)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHhhccC
Confidence 67779999999999999999999999999998861 111234578999999999999999999999994433
Q ss_pred C-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHHhhHHhhhHHHH
Q 027389 72 G-GSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQM 150 (224)
Q Consensus 72 ~-~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~~~~R~eLl~~~~~~~~~~~d~~~~~~~~~~~ll~e~~~L~~S~~~l 150 (224)
+ +.++..|+++|||++|++|.+||++++.++.+.++|+.|++++..... ..+...+ ....+++++|+++|++|.+.+
T Consensus 81 ~a~~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~~-~~~~~~~-~~~~e~~lkE~~~in~s~~~v 158 (231)
T KOG3208|consen 81 PANSAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRADIS-SYPSASG-FNRGEMYLKEHDHINNSIRLV 158 (231)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCCccCC-CchHHHHHHHhccccchHHHH
Confidence 2 245667999999999999999999999999999999999999764321 1222222 344489999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 027389 151 DSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVT 223 (224)
Q Consensus 151 d~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il~~vi~~~i~~~~~~~~~ 223 (224)
|++|+||++|+++|+.||.+|++++.|+++++++||.+|.+|.+|++|++||.+|||+||++|++|++||||.
T Consensus 159 de~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy~~~ 231 (231)
T KOG3208|consen 159 DELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFYWIN 231 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999984
No 2
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.3e-30 Score=212.34 Aligned_cols=198 Identities=22% Similarity=0.300 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 027389 8 DALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEI 87 (224)
Q Consensus 8 ~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~ 87 (224)
+.|...+.+.-.++...|.++++.... .+-..++.+|+..++++...|..|+..+.+.||+..+ -.+.+
T Consensus 2 ~~ly~~t~~~~~k~q~~l~rlE~~~~~-------~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp~~rq--~~rlr-- 70 (213)
T KOG3251|consen 2 DALYQSTNRQLDKLQRGLIRLERTIKT-------QEVSAVENSIQRSIDQYASRCQRLDVLVSKEPPKSRQ--AARLR-- 70 (213)
T ss_pred chHHHHHHHHHHHHHHHHHHHHccccc-------cchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCCCcHH--HHHHH--
Confidence 567888888888999999999976542 2346789999999999999999999999999876543 12222
Q ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHHhhHHhhhHHHHHHHHHH
Q 027389 88 LQDLTQEFYRLRS-----------SLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQ 156 (224)
Q Consensus 88 L~~~~~ef~rlk~-----------~~~~~~~R~eLl~~~~~~~~~~~d~~~~~~~~~~~ll~e~~~L~~S~~~ld~~l~~ 156 (224)
.++++.||..++. ..+++++|.+||++. |..+ + .++..+.|.++++++++.+|++++|+++.+
T Consensus 71 ~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~--~~~~--~--~~~~~~~D~el~~~d~l~~s~~~lDd~l~~ 144 (213)
T KOG3251|consen 71 VDQLLEDVEHLQTSLRTSMNRNNRREQQARERVELLDRR--FTNG--A--TGTSIPFDEELQENDSLKRSHNMLDDLLES 144 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC--CCCC--C--ccCCCcchHHHHhhhHHHHHHhhHHHHHHH
Confidence 4444444444433 345567799999872 2221 1 122334689999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHH-HHHHHHHHHHHHHHHH
Q 027389 157 AQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL-ALVASVCTFLIFIYWV 222 (224)
Q Consensus 157 g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il-~~vi~~~i~~~~~~~~ 222 (224)
|++|+++|.+||.+|+++++|+++++++||.||.||+.|+||.+.||||+ +|||+||++|+++|.|
T Consensus 145 G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~yl~~~w 211 (213)
T KOG3251|consen 145 GSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLVIMYLFYRW 211 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 8888888888766655
No 3
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-29 Score=207.69 Aligned_cols=206 Identities=19% Similarity=0.203 Sum_probs=159.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchh---hHHHH
Q 027389 5 SSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEM---VSHTL 81 (224)
Q Consensus 5 ~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~---~~~~l 81 (224)
+-|+.+.++++-|-.+|..|+++..+.+ +++++.+..+|+..+++++++++||+.+|+..||+. +..++
T Consensus 3 ~~fe~yEqqy~~l~a~it~k~~~~~~~~--------~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~Kl 74 (220)
T KOG1666|consen 3 SLFEGYEQQYRELSAEITKKIGRALSLP--------GSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKL 74 (220)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHhcCC--------chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHH
Confidence 5689999999999999999988876543 367888999999999999999999999999999753 22344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHHhhHHh-------hhHHHHHHHH
Q 027389 82 TRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASIN-------RSTGQMDSVI 154 (224)
Q Consensus 82 ~r~r~~L~~~~~ef~rlk~~~~~~~~R~eLl~~~~~~~~~~~d~~~~~~~~~~~ll~e~~~L~-------~S~~~ld~~l 154 (224)
..|+..|.+++.|+++..+.--...+|+++++.... .|.+. ..+++++||+.+++|+ .|+|.+.++.
T Consensus 75 R~yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~~a-----dd~~~-~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETE 148 (220)
T KOG1666|consen 75 REYKSDLKKLKRELKRTTSRNLNAGDRDELLEALEA-----DDQNI-SADQRARLLQNTERLERSTDRLKDSQRIALETE 148 (220)
T ss_pred HHHHHHHHHHHHHHHHhhccccccchHHHHHhhhhc-----ccccc-chhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Confidence 444555555554444444222224467888765321 12111 1456677776666555 5556777899
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhC
Q 027389 155 SQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK 224 (224)
Q Consensus 155 ~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il~~vi~~~i~~~~~~~~~k 224 (224)
++|.+|+++|+.||++|.+++.+|++++.++|.|+++++.|.||..+++|+++++|+++++++++..|.|
T Consensus 149 qIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~k 218 (220)
T KOG1666|consen 149 QIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSK 218 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999988888887666654
No 4
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=99.62 E-value=1.6e-15 Score=104.81 Aligned_cols=66 Identities=35% Similarity=0.481 Sum_probs=64.0
Q ss_pred HHHHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhh
Q 027389 134 QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKK 199 (224)
Q Consensus 134 ~~ll~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~ 199 (224)
|+|++|+++|++|++++++++++|.+|+.+|..||++|+++++|+.++++++|.++++|+.|.+|+
T Consensus 1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~ 66 (66)
T PF12352_consen 1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK 66 (66)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence 579999999999999999999999999999999999999999999999999999999999999985
No 5
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=99.05 E-value=2.2e-09 Score=78.92 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=70.8
Q ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 027389 140 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFI 219 (224)
Q Consensus 140 ~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il~~vi~~~i~~~~~ 219 (224)
.++|.++++++.+-++++..+++.|..|.++|+.+++...++...++.+.++++.|+||...|++|+++.++++++.++|
T Consensus 7 T~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~y 86 (92)
T PF03908_consen 7 TESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLY 86 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999885444333333333
Q ss_pred H
Q 027389 220 Y 220 (224)
Q Consensus 220 ~ 220 (224)
+
T Consensus 87 I 87 (92)
T PF03908_consen 87 I 87 (92)
T ss_pred H
Confidence 3
No 6
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=98.54 E-value=1.7e-06 Score=61.51 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHH
Q 027389 16 KLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEF 95 (224)
Q Consensus 16 ~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef 95 (224)
.+-.+|..+|..+... +++++.....+|+..|+++.+++++|+.++++.|++ ....|...+.+|+.++
T Consensus 3 ~l~~~i~~~l~~~~~~--------~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s----~r~~~~~kl~~yr~~l 70 (79)
T PF05008_consen 3 ALTAEIKSKLERIKNL--------SGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPS----ERNQYKSKLRSYRSEL 70 (79)
T ss_dssp HHHHHHHHHHHHGGGS---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc--------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHH
Confidence 4556677777766632 236889999999999999999999999999988753 2566777888888888
Q ss_pred HHHHHHHH
Q 027389 96 YRLRSSLK 103 (224)
Q Consensus 96 ~rlk~~~~ 103 (224)
++++..++
T Consensus 71 ~~lk~~l~ 78 (79)
T PF05008_consen 71 KKLKKELK 78 (79)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88877764
No 7
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.0024 Score=55.55 Aligned_cols=210 Identities=13% Similarity=0.189 Sum_probs=119.2
Q ss_pred HHHHHHHH---HHHHHHHHHHHhhhccCCCCCc--hhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH
Q 027389 12 KQARKLEA---QLDEQMHSYRKLVSSKGSTKVD--AAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQE 86 (224)
Q Consensus 12 ~~ar~lE~---~i~~kl~~~s~~~~~~~~~~~~--~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~ 86 (224)
+-|.+.-. +...||..+..++...+ ...+ -+-..+.--|...+..++.-+-++...+...+..+-.+...+++.
T Consensus 45 ~~A~~Ig~~is~T~~kl~kLa~lAKrks-~f~Dr~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~~~~Hs~~ 123 (311)
T KOG0812|consen 45 KKASRIGKEISQTGAKLEKLAQLAKRKS-LFDDRPVEIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQLVQHSKN 123 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccCcchhhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchHhhhhhHH
Confidence 34444444 44556666666665432 1111 123344445555566666666666655532221111244666666
Q ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHhhccccc-ccccc-----cccC----------C----------C-
Q 027389 87 ILQDLTQEFYRLRSSL-----------KAKQEHASLLEDFRE-FDRTR-----LDLE----------D----------G- 128 (224)
Q Consensus 87 ~L~~~~~ef~rlk~~~-----------~~~~~R~eLl~~~~~-~~~~~-----~d~~----------~----------~- 128 (224)
.+.+++..+..+-..+ .+.++|.+.|..... .+.++ .+.. + +
T Consensus 124 vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd 203 (311)
T KOG0812|consen 124 VVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESLNMGD 203 (311)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhhhcCchhhcccccccccccC
Confidence 6666655554444333 445678888865311 00000 0000 0 0
Q ss_pred -CCC--HHHHHHHHhhH--------HhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHh
Q 027389 129 -VGS--PEQALLKEHAS--------INRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKR 197 (224)
Q Consensus 129 -~~~--~~~~ll~e~~~--------L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~r 197 (224)
... ....++.|.+. +++-...+-|+=++=.+.-.-..+|.|+++++-.-+.+++-.++++.+.|-+-=.
T Consensus 204 ~~~~qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e 283 (311)
T KOG0812|consen 204 SSNPQQQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFE 283 (311)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHH
Confidence 011 22466666622 2222223333333334445556789999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Q 027389 198 KKSMDTIILALVASVCTFLIFIYWV 222 (224)
Q Consensus 198 R~~rd~~Il~~vi~~~i~~~~~~~~ 222 (224)
|...++|.+.=+++++++||++||+
T Consensus 284 ~vSSNRwLmvkiF~i~ivFflvfvl 308 (311)
T KOG0812|consen 284 RVSSNRWLMVKIFGILIVFFLVFVL 308 (311)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999997777777777766654
No 8
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0084 Score=51.29 Aligned_cols=197 Identities=16% Similarity=0.237 Sum_probs=120.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHH
Q 027389 4 PSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTR 83 (224)
Q Consensus 4 ~~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r 83 (224)
..+|-....++.++.+++......++.+....++. ....-..+...|+..++.+++++.=+..-..+...+. -.+++
T Consensus 5 ~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~~~~~-~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide--~El~~ 81 (235)
T KOG3202|consen 5 EDPFFRVKNETLKLSEEIQGLYQRRSELLKDTGSD-AEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDE--FELSR 81 (235)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcH--HHHHH
Confidence 47899999999999999999999999987752211 1111122334777777777776666554333321110 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhccccccc-ccccccCCCCC------CHHHHHHHHhh-HHhhhHHHH
Q 027389 84 HQEILQDLTQEFYRLRSSLKA-----KQEHASLLEDFREFD-RTRLDLEDGVG------SPEQALLKEHA-SINRSTGQM 150 (224)
Q Consensus 84 ~r~~L~~~~~ef~rlk~~~~~-----~~~R~eLl~~~~~~~-~~~~d~~~~~~------~~~~~ll~e~~-~L~~S~~~l 150 (224)
=+..+.+.+.+.+..+..+.. ...|.-|++.-...+ ........+.. ...+.+++|++ .|+.-+..+
T Consensus 82 R~~~i~~lr~q~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld~ls~ti 161 (235)
T KOG3202|consen 82 RRRFIDNLRTQLRQMKSKMAMSGFANSNIRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQDEGLDGLSATV 161 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344444444444444332 122666765411000 00000000111 11246667665 488888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhh
Q 027389 151 DSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDT 203 (224)
Q Consensus 151 d~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~ 203 (224)
-.+-.+|.++-+.|..|..+|..--.=|-.+.+.|....+-+.++.+.+....
T Consensus 162 ~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~ 214 (235)
T KOG3202|consen 162 QRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCS 214 (235)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88899999999999999999998888888888888888888888888544443
No 9
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=96.52 E-value=0.46 Score=40.92 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=58.1
Q ss_pred HHHHHHHhhHHhhhHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHH
Q 027389 133 EQALLKEHASINRSTGQMDSVISQA-------QATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTII 205 (224)
Q Consensus 133 ~~~ll~e~~~L~~S~~~ld~~l~~g-------~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~I 205 (224)
.+..++.+..++. ...++++..| ...-..|.....+|..+...+..-...++..+.=++.+.++... .|.
T Consensus 154 ~e~~l~~~~~~QE--~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~-~~~ 230 (251)
T PF09753_consen 154 LEKILQHHRNLQE--DLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG-CWT 230 (251)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHH
Confidence 3566666666664 3456666555 44667788899999999998888888888888877777655544 444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027389 206 LALVASVCTFLIFIYWV 222 (224)
Q Consensus 206 l~~vi~~~i~~~~~~~~ 222 (224)
+.+++++|++|++.|+|
T Consensus 231 ~~~i~~v~~~Fi~mvl~ 247 (251)
T PF09753_consen 231 WLMIFVVIIVFIMMVLF 247 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444445555544444
No 10
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=96.29 E-value=0.072 Score=38.40 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=40.2
Q ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhh
Q 027389 141 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDT 203 (224)
Q Consensus 141 ~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~ 203 (224)
+.+..-...++++-+.-.+-.+.+-+-.+.|.....|-.++...-..-.+--+.+.++..-..
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~ 65 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRN 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777777777777666665544444444444454444333
No 11
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=0.24 Score=37.72 Aligned_cols=84 Identities=15% Similarity=0.286 Sum_probs=57.4
Q ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhh---ccCCc-HHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 027389 140 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVS---SRLPS-VNQILSSIKRKKSMDTIILALVASVCTF 215 (224)
Q Consensus 140 ~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~---~~l~~-s~~ll~~I~rR~~rd~~Il~~vi~~~i~ 215 (224)
..++++....+|++.++-..=.+..-+=-+.|....+|-..+. +.|-. +.++=+++=.+..+-++|++.|++++++
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV 107 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999887755555555556666655544433 33433 3445566777778888888888877777
Q ss_pred HHHHHHHh
Q 027389 216 LIFIYWVT 223 (224)
Q Consensus 216 ~~~~~~~~ 223 (224)
++++|+|.
T Consensus 108 iiii~~~~ 115 (116)
T KOG0860|consen 108 VIIIYIFL 115 (116)
T ss_pred HHHHHHhc
Confidence 77777664
No 12
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=0.095 Score=39.80 Aligned_cols=82 Identities=6% Similarity=0.101 Sum_probs=49.4
Q ss_pred HHhhH-HhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhh--hHHHHHHHHHHH
Q 027389 138 KEHAS-INRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMD--TIILALVASVCT 214 (224)
Q Consensus 138 ~e~~~-L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd--~~Il~~vi~~~i 214 (224)
+|+++ ++.=...+--+=.....|-.+...|+..|.+..+-+..+ -+...++|.++..=.++. ++..|..+++++
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdst---s~~L~gtm~r~~~~ar~sg~~l~~~m~~f~lV 108 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDST---SGFLSGTMGRLKTMARRSGISLLCWMAVFSLV 108 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhh---HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 44444 333334455555667778888899999999988765544 455556666665555555 344465555555
Q ss_pred HHHHHHHH
Q 027389 215 FLIFIYWV 222 (224)
Q Consensus 215 ~~~~~~~~ 222 (224)
.||++|||
T Consensus 109 ~~fi~~~~ 116 (118)
T KOG3385|consen 109 AFFILWVW 116 (118)
T ss_pred HHHHhhee
Confidence 55544443
No 13
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=2.2 Score=37.61 Aligned_cols=211 Identities=15% Similarity=0.167 Sum_probs=111.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc---hhH---HhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh
Q 027389 4 PSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVD---AAE---NDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMV 77 (224)
Q Consensus 4 ~~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~---~~~---~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~ 77 (224)
|+.|-+.-.++...=..+..++..+.+.-..+.-|.-+ .++ ..+..+|..+|..-+..+.....-...++|...
T Consensus 56 pP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~ 135 (305)
T KOG0809|consen 56 PPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSER 135 (305)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHH
Confidence 46788888888888888888888888875544222111 111 234445555555555555554433322333322
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh----hccccc--ccccccccCCCCCCHHHHHHH---------
Q 027389 78 S---HTLTRHQEILQDLTQEFYRLRSSLKA-KQEHASL----LEDFRE--FDRTRLDLEDGVGSPEQALLK--------- 138 (224)
Q Consensus 78 ~---~~l~r~r~~L~~~~~ef~rlk~~~~~-~~~R~eL----l~~~~~--~~~~~~d~~~~~~~~~~~ll~--------- 138 (224)
. +...-+-..|+....+|+..+..+-. -+.|++= +.+.-. ..+...|.+.. ...+++++.
T Consensus 136 ~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~-~~qe~ql~~~e~~~~~~~ 214 (305)
T KOG0809|consen 136 LLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDR-TFQEQQLMLFENNEEVVR 214 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhh-hHHHHHHHHHhcchHHHH
Confidence 1 34455667888889999988877633 2223221 111000 00000111111 111222222
Q ss_pred HhhHHhhhHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHH-HHHHHHHHH
Q 027389 139 EHASINRSTGQMDSVISQA---QATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTII-LALVASVCT 214 (224)
Q Consensus 139 e~~~L~~S~~~ld~~l~~g---~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~I-l~~vi~~~i 214 (224)
||++ .-...+..+++.+ ...-.-...|.-.+.++-=-+.++.-++....+=+.++++..++++-. +.+|.++|+
T Consensus 215 erE~--EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~i 292 (305)
T KOG0809|consen 215 EREK--EVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLI 292 (305)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHH
Confidence 2221 1122222222222 122223357888888888888888888888999999999999988532 233333444
Q ss_pred HHH
Q 027389 215 FLI 217 (224)
Q Consensus 215 ~~~ 217 (224)
|++
T Consensus 293 i~l 295 (305)
T KOG0809|consen 293 IAL 295 (305)
T ss_pred HHH
Confidence 443
No 14
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=94.04 E-value=0.2 Score=34.58 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=39.7
Q ss_pred HHHHHhHHHHhhccCCcHHH-HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027389 171 FGGINSKLSNVSSRLPSVNQ-ILSSIKRKKSMDTIILALVASVCTFLIFIYWV 222 (224)
Q Consensus 171 L~~~~~rl~~~~~~l~~s~~-ll~~I~rR~~rd~~Il~~vi~~~i~~~~~~~~ 222 (224)
+..+.+||..+...+-..|. +.+++.++.-||-=|++|+++.+++++++..+
T Consensus 14 ~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l 66 (70)
T PF04210_consen 14 FNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYIVL 66 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888877777776 78899999999999997777667766665544
No 15
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.85 E-value=5.8 Score=34.27 Aligned_cols=148 Identities=16% Similarity=0.241 Sum_probs=79.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHh---cCCchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHhhccccc-
Q 027389 44 ENDLESGIDWLLKQLQQVNIQMQDWVS---SGGSEMVSHTLTRHQEILQDLT-QEFYRLRSSLKAK-QEHASLLEDFRE- 117 (224)
Q Consensus 44 ~~~l~~eI~~~L~~~~~~~~~m~~~v~---~~~~~~~~~~l~r~r~~L~~~~-~ef~rlk~~~~~~-~~R~eLl~~~~~- 117 (224)
-..+...|......+.++++++..+-. ..|+..+...+..-+..|.+.+ ++|...+.....+ .+=..||..+..
T Consensus 89 a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~ 168 (264)
T PF06008_consen 89 AQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKW 168 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 366888999999999999999987665 2333344444554455555553 2355555444333 234556666542
Q ss_pred ccccccccCCCC-CCHHHHHHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHH
Q 027389 118 FDRTRLDLEDGV-GSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQIL 192 (224)
Q Consensus 118 ~~~~~~d~~~~~-~~~~~~ll~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll 192 (224)
|.....+. .+. ..-.+.|-+....|..-...+++..+...++-.-....+..|..+.+|...+...-..++.+|
T Consensus 169 ~~~~~~~~-~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L 243 (264)
T PF06008_consen 169 FQKPQQEN-ESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETL 243 (264)
T ss_pred HhhHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110011 111 111245555556666666666666655555555555555555555555555554444444433
No 16
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=91.87 E-value=0.54 Score=32.46 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=29.4
Q ss_pred HHHHhHHHHhhccCCcHHH-HHHHHHhhhhhhhHHH-HHHHHHHHHHH
Q 027389 172 GGINSKLSNVSSRLPSVNQ-ILSSIKRKKSMDTIIL-ALVASVCTFLI 217 (224)
Q Consensus 172 ~~~~~rl~~~~~~l~~s~~-ll~~I~rR~~rd~~Il-~~vi~~~i~~~ 217 (224)
..+++||-++...+...|. +-++|..+.-||-=|| |.||+..++++
T Consensus 18 ne~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGlVIGlil~~i 65 (75)
T COG4064 18 NEIHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGLVIGLILCMI 65 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3455555555555555555 6788899999998888 55554444443
No 17
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=91.25 E-value=4.5 Score=29.54 Aligned_cols=91 Identities=8% Similarity=0.169 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcC--Cchhh---HHH
Q 027389 6 SWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSG--GSEMV---SHT 80 (224)
Q Consensus 6 ~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~--~~~~~---~~~ 80 (224)
+|-..+.++...=..++..+.++..+....+ ...+...+..++...|+.+...++.++..|.-. .|.+. ...
T Consensus 2 PF~~v~~ev~~sl~~l~~~~~~~~~~~~~~~---~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~E 78 (97)
T PF09177_consen 2 PFFVVKDEVQSSLDRLESLYRRWQRLRSDTS---SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEE 78 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHH
Confidence 4667777777777777888888887766433 345566777888888888888888887666521 23222 155
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027389 81 LTRHQEILQDLTQEFYRLR 99 (224)
Q Consensus 81 l~r~r~~L~~~~~ef~rlk 99 (224)
+.++|.-+.+.+.+.+.++
T Consensus 79 i~~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 79 ISRRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 7888888888887766553
No 18
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=91.21 E-value=0.82 Score=31.55 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=35.1
Q ss_pred HHHHHhHHHHhhccCCcHHH-HHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 027389 171 FGGINSKLSNVSSRLPSVNQ-ILSSIKRKKSMDTIILALVASVCTFLIFI 219 (224)
Q Consensus 171 L~~~~~rl~~~~~~l~~s~~-ll~~I~rR~~rd~~Il~~vi~~~i~~~~~ 219 (224)
++.+++||..+..++-..|. +-+++.++.-||-=|++|+++.+++++++
T Consensus 14 ~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~~~ 63 (70)
T TIGR01149 14 FNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFLIY 63 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777776 77889999999998886555455444433
No 19
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=91.13 E-value=0.79 Score=32.33 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=34.3
Q ss_pred HHHHHhHHHHhhccCCcHHH-HHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 027389 171 FGGINSKLSNVSSRLPSVNQ-ILSSIKRKKSMDTIILALVASVCTFLIF 218 (224)
Q Consensus 171 L~~~~~rl~~~~~~l~~s~~-ll~~I~rR~~rd~~Il~~vi~~~i~~~~ 218 (224)
++.+++||.++..++-..|. +-+++..+.-||-=|++|+++.++++++
T Consensus 17 ~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~i 65 (77)
T PRK01026 17 FKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVLV 65 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHH
Confidence 45667777777777777766 7788999999999888655544444443
No 20
>PRK09546 zntB zinc transporter; Reviewed
Probab=89.68 E-value=14 Score=32.75 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 47 LESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKA 104 (224)
Q Consensus 47 l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~ 104 (224)
+.......++++++-++.++..+.+.+.+. +..+..++++.-+++..+..
T Consensus 151 ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~--------~~~l~~lrr~l~~lrr~l~p 200 (324)
T PRK09546 151 LTDHASEFIEELHDKIIDLEDNLLDQQIPP--------RGELALLRKQLIVMRRYMAP 200 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--------HHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666655554332111 12566777777777666544
No 21
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=88.70 E-value=5.6 Score=33.99 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027389 46 DLESGIDWLLKQLQQVNIQMQDWVSSGG 73 (224)
Q Consensus 46 ~l~~eI~~~L~~~~~~~~~m~~~v~~~~ 73 (224)
.+.......++.+.+-++.++..+.+.+
T Consensus 118 ~~~~~~~~~l~~l~~~l~~le~~~~~~~ 145 (292)
T PF01544_consen 118 EIVDDYFEVLEELEDELDELEDELDDRP 145 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3445555666666666666666664444
No 22
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.98 E-value=22 Score=30.01 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCch---hhHHHHHHHHHHHHH
Q 027389 14 ARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSE---MVSHTLTRHQEILQD 90 (224)
Q Consensus 14 ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~---~~~~~l~r~r~~L~~ 90 (224)
.-..|.++....+..++-+..++ ... -.|=...+.+++.-++..+.++....-. .-.+...-|..+|++
T Consensus 5 fe~yEqqy~~l~a~it~k~~~~~----~~~----~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~ 76 (220)
T KOG1666|consen 5 FEGYEQQYRELSAEITKKIGRAL----SLP----GSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLRE 76 (220)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHh----cCC----chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHH
Confidence 34567777777777776655422 111 2233456677777777777777655421 122567778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccC-CCCCCHHHHHHHHhhHHhhhHHHHH-------HHHHHHHHHHH
Q 027389 91 LTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLE-DGVGSPEQALLKEHASINRSTGQMD-------SVISQAQATLG 162 (224)
Q Consensus 91 ~~~ef~rlk~~~~~~~~R~eLl~~~~~~~~~~~d~~-~~~~~~~~~ll~e~~~L~~S~~~ld-------~~l~~g~~~l~ 162 (224)
|++++++++..++....+.-..+. ..+.. ....+.....-+.+.+|-.++..+. +-..+|.+| +
T Consensus 77 yksdl~~l~~e~k~~~~~~~~~~~-------rde~~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ET-E 148 (220)
T KOG1666|consen 77 YKSDLKKLKRELKRTTSRNLNAGD-------RDELLEALEADDQNISADQRARLLQNTERLERSTDRLKDSQRIALET-E 148 (220)
T ss_pred HHHHHHHHHHHHHHhhccccccch-------HHHHHhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHH-H
Confidence 999999999888776522111111 00000 0001111234455666655554443 223333333 3
Q ss_pred HHHHh-HHHHHHHHhHHHHhhccCCcHHHHHHHH
Q 027389 163 ALVFQ-RSTFGGINSKLSNVSSRLPSVNQILSSI 195 (224)
Q Consensus 163 ~L~~Q-r~~L~~~~~rl~~~~~~l~~s~~ll~~I 195 (224)
.+..| =+-|.+-+..|...-.+|...+.-+++=
T Consensus 149 qIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS 182 (220)
T KOG1666|consen 149 QIGSEILEDLHGQREQLERARERLRETDANLGKS 182 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHH
Confidence 33333 2457777778888777887777777653
No 23
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=83.93 E-value=18 Score=33.71 Aligned_cols=104 Identities=18% Similarity=0.221 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH--------hhhc---------cCCCC------------Cchh-HHhHHHHHHHH
Q 027389 5 SSWDALRKQARKLEAQLDEQMHSYRK--------LVSS---------KGSTK------------VDAA-ENDLESGIDWL 54 (224)
Q Consensus 5 ~~w~~lr~~ar~lE~~i~~kl~~~s~--------~~~~---------~~~~~------------~~~~-~~~l~~eI~~~ 54 (224)
.+.++||+++..||+.++..--.+.. +.+. -|.++ ...+ -..+. ..
T Consensus 179 ~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~----~h 254 (552)
T KOG2129|consen 179 NTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEK----LH 254 (552)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHH----HH
Confidence 57899999999999998865444332 2111 01110 1111 11122 23
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027389 55 LKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLE 113 (224)
Q Consensus 55 L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~~~~R~eLl~ 113 (224)
++.+..-++++..++....- ..+-.+.+|+..=.+.+.|..|++..+....+|-|-|.
T Consensus 255 i~~l~~EveRlrt~l~~Aqk-~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealc 312 (552)
T KOG2129|consen 255 IDKLQAEVERLRTYLSRAQK-SYQEKLMQYRAEEVDHREENERLQRKLINELERREALC 312 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555544433210 12234666777777777777777777777666655554
No 24
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.49 E-value=20 Score=32.04 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=54.0
Q ss_pred HHHHHHhhHHhhhHHHHHHHHHHHH-----------HHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhh
Q 027389 134 QALLKEHASINRSTGQMDSVISQAQ-----------ATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMD 202 (224)
Q Consensus 134 ~~ll~e~~~L~~S~~~ld~~l~~g~-----------~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd 202 (224)
+.+-.|+.+|.+-.+.+++-+.+-. -.-+-+-.|=..+..+++-..++...+..+|.=|+++.+...+.
T Consensus 214 Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~ 293 (316)
T KOG3894|consen 214 QLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGL 293 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccc
Confidence 3444678887777665554443332 13445667778888888888889999999999999998888777
Q ss_pred h-HHHHHHH
Q 027389 203 T-IILALVA 210 (224)
Q Consensus 203 ~-~Il~~vi 210 (224)
+ |++++.+
T Consensus 294 r~~~lf~ll 302 (316)
T KOG3894|consen 294 RVFLLFFLL 302 (316)
T ss_pred hhHHHHHHH
Confidence 4 5665444
No 25
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=82.14 E-value=31 Score=29.44 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=52.9
Q ss_pred HHHHHHHhhHHhh----hHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHHH
Q 027389 133 EQALLKEHASINR----STGQMD-SVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA 207 (224)
Q Consensus 133 ~~~ll~e~~~L~~----S~~~ld-~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il~ 207 (224)
.|+.+..++.++. |--.+- .+=..+.+.-+.|..-++++..+-.-+-.-...|+-.+.=+.+=...+.=+++-++
T Consensus 142 ~dq~l~~q~~lQeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~ 221 (244)
T KOG2678|consen 142 VDQQLEDQDTLQEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYIT 221 (244)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHH
Confidence 5666666665543 222222 22233455667788888888887776666666777777766666666665666667
Q ss_pred HHHHHHHHHH
Q 027389 208 LVASVCTFLI 217 (224)
Q Consensus 208 ~vi~~~i~~~ 217 (224)
.+|++|+.|+
T Consensus 222 miI~v~~sFV 231 (244)
T KOG2678|consen 222 MIIFVILSFV 231 (244)
T ss_pred HHHHHHHHHH
Confidence 6777776665
No 26
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=81.30 E-value=10 Score=24.63 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=46.1
Q ss_pred HHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHH
Q 027389 138 KEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQIL 192 (224)
Q Consensus 138 ~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll 192 (224)
.-...|.+....+-++-+++..+-..+..|++.|.++...+..+...+.....-+
T Consensus 9 ~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l 63 (66)
T smart00397 9 ERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRL 63 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4455688888999999999999999999999999999999988887766655433
No 27
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.20 E-value=24 Score=29.62 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027389 83 RHQEILQDLTQEFYRLRSSLKA 104 (224)
Q Consensus 83 r~r~~L~~~~~ef~rlk~~~~~ 104 (224)
..++.|..+++|+..++.++..
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888888766655
No 28
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=81.19 E-value=5 Score=26.92 Aligned_cols=27 Identities=4% Similarity=-0.075 Sum_probs=15.3
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 027389 191 ILSSIKRKKSMDTIILALVASVCTFLI 217 (224)
Q Consensus 191 ll~~I~rR~~rd~~Il~~vi~~~i~~~ 217 (224)
...+-.+|.++-++|+.++++++++++
T Consensus 27 ~~~k~qk~~~~~~~i~~~~~i~~l~v~ 53 (59)
T PF09889_consen 27 EYRKRQKRMRKTQYIFFGIFILFLAVW 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666788866654444433
No 29
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=80.71 E-value=18 Score=25.71 Aligned_cols=65 Identities=11% Similarity=0.203 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 027389 150 MDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYW 221 (224)
Q Consensus 150 ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il~~vi~~~i~~~~~~~ 221 (224)
+|.+++.| +-+++|..+=+.|......+..- +..+=+.+-.+..+=.+|++++++++++++++++
T Consensus 23 i~~ll~Rg-e~L~~L~~kt~~L~~~a~~F~k~------a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i~~~~ 87 (89)
T PF00957_consen 23 IDKLLERG-EKLEELEDKTEELSDNAKQFKKN------AKKLKRKMWWRNYKLYIIIIIIVIIIILIIIIVI 87 (89)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC-chHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHH
Confidence 34444444 24566666666666555555543 3456677788888888888877766555555543
No 30
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=80.35 E-value=14 Score=24.23 Aligned_cols=59 Identities=10% Similarity=0.094 Sum_probs=49.6
Q ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhh
Q 027389 141 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKK 199 (224)
Q Consensus 141 ~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~ 199 (224)
+.|..=...+.++-.++..+-..+..|.+.|.++...+..+...+...+.=|.+..+++
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~ 62 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35666677788888999999999999999999999999999998888887777666554
No 31
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=79.36 E-value=39 Score=28.85 Aligned_cols=53 Identities=4% Similarity=0.033 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 027389 155 SQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 220 (224)
Q Consensus 155 ~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il~~vi~~~i~~~~~~ 220 (224)
+....+..++..+|+-++++-+.+.. .++.-..+.+++..|+++++++|++|.
T Consensus 113 e~k~~~~~ei~k~r~e~~~ml~evK~-------------~~E~y~k~~k~~~~gi~aml~Vf~LF~ 165 (230)
T PF03904_consen 113 ELKNIAQNEIKKVREENKSMLQEVKQ-------------SHEKYQKRQKSMYKGIGAMLFVFMLFA 165 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44455777888888888887776665 678888888888866666666666543
No 32
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=78.98 E-value=18 Score=24.82 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=16.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 027389 200 SMDTIILALVASVCTFLIFIYWV 222 (224)
Q Consensus 200 ~rd~~Il~~vi~~~i~~~~~~~~ 222 (224)
.-.+|+++.+++.++.+++.+++
T Consensus 48 ~n~kW~~r~iiGaiI~~i~~~i~ 70 (71)
T PF10779_consen 48 SNTKWIWRTIIGAIITAIIYLII 70 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33588888888777777665554
No 33
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=78.57 E-value=0.97 Score=27.93 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 027389 208 LVASVCTFLIFIYWVT 223 (224)
Q Consensus 208 ~vi~~~i~~~~~~~~~ 223 (224)
+||+.++.+++|+||+
T Consensus 22 ~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYR 37 (40)
T ss_pred HHHHHHHHHHhheEEe
Confidence 4555555555554553
No 34
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.76 E-value=7.9 Score=33.99 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=46.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHH
Q 027389 142 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK 196 (224)
Q Consensus 142 ~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~ 196 (224)
+-.++...+.+.-..|..|+..|..|++.|.++...+-.+...+-...+.|..++
T Consensus 80 St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~ 134 (273)
T KOG3065|consen 80 STRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELK 134 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3455666777888999999999999999999999999999988888877776654
No 35
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=76.61 E-value=52 Score=28.80 Aligned_cols=49 Identities=22% Similarity=0.231 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 49 SGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKA 104 (224)
Q Consensus 49 ~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~ 104 (224)
......++++++-++.++..+.+.+... .-..+..+++++-+++..+..
T Consensus 145 d~~~~~l~~l~~~~~~le~~l~~~~~~~-------~l~~l~~l~~~l~~l~~~l~~ 193 (318)
T TIGR00383 145 DSYFPLLENIEDELEELEDEIISGPTST-------LMDEILSLRTELLALRRSLWP 193 (318)
T ss_pred hccHHHHHHHHHHHHHHHHHHhcCCCHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666665554443221 123555666666666655543
No 36
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=72.77 E-value=26 Score=23.61 Aligned_cols=53 Identities=21% Similarity=0.463 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 47 LESGIDWLLKQLQQVNIQMQ--DWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLK 103 (224)
Q Consensus 47 l~~eI~~~L~~~~~~~~~m~--~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~ 103 (224)
+..+++..-.++..+-..|+ .++.+.|+ ..+...++.|.+|..++.++...+.
T Consensus 9 L~Kel~kl~~~i~~~~~kL~n~~F~~kAP~----eVve~er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 9 LEKELEKLEKEIERLEKKLSNENFVEKAPE----EVVEKEREKLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTHHHHS-C----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCccccccCCH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333333333433 33444444 3477788999999999998877764
No 37
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=72.12 E-value=1.2e+02 Score=30.78 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHhh
Q 027389 5 SSWDALRKQARKLEAQLDEQMHS-YRKLV 32 (224)
Q Consensus 5 ~~w~~lr~~ar~lE~~i~~kl~~-~s~~~ 32 (224)
++.++++.=....-.+|+..+.. |....
T Consensus 180 ~~~~Dl~~~l~~~~~qi~~l~~~ny~~~~ 208 (806)
T PF05478_consen 180 STLDDLRTFLNDTPQQIDHLLVQNYSELK 208 (806)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 46777777777777888877777 76553
No 38
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=70.83 E-value=5.6 Score=23.49 Aligned_cols=12 Identities=25% Similarity=0.858 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 027389 211 SVCTFLIFIYWV 222 (224)
Q Consensus 211 ~~~i~~~~~~~~ 222 (224)
+++.++++.+||
T Consensus 13 ~iLt~~ILvFWf 24 (34)
T PF08113_consen 13 MILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 39
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=69.00 E-value=7.4 Score=25.05 Aligned_cols=24 Identities=4% Similarity=-0.067 Sum_probs=15.5
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHH
Q 027389 191 ILSSIKRKKSMDTIILALVASVCT 214 (224)
Q Consensus 191 ll~~I~rR~~rd~~Il~~vi~~~i 214 (224)
..+.+-+|-++|+.-+.|++++++
T Consensus 4 ~~~~~~~~f~~nk~a~~gl~il~~ 27 (56)
T PF12911_consen 4 PWKDAWRRFRRNKLAVIGLIILLI 27 (56)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHH
Confidence 456677888999987744443333
No 40
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=67.79 E-value=1.7 Score=29.60 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=0.4
Q ss_pred HHHHHHHHHHhC
Q 027389 213 CTFLIFIYWVTK 224 (224)
Q Consensus 213 ~i~~~~~~~~~k 224 (224)
++++|++|.++|
T Consensus 27 lLIlf~iyR~rk 38 (64)
T PF01034_consen 27 LLILFLIYRMRK 38 (64)
T ss_dssp ----------S-
T ss_pred HHHHHHHHHHHh
Confidence 334444555443
No 41
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=65.26 E-value=48 Score=23.78 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhhccCCCCCch----hHHhHHHHHHHHHHHHHHHHHHHHH
Q 027389 19 AQLDEQMHSYRKLVSSKGSTKVDA----AENDLESGIDWLLKQLQQVNIQMQD 67 (224)
Q Consensus 19 ~~i~~kl~~~s~~~~~~~~~~~~~----~~~~l~~eI~~~L~~~~~~~~~m~~ 67 (224)
..|...++.|.+.....+++.... .-..+..++..++....+.+..+..
T Consensus 6 ~~in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~ 58 (102)
T PF14523_consen 6 FKINQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNS 58 (102)
T ss_dssp HHHHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777766655432111 1123344444444444544444444
No 42
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=64.29 E-value=1e+02 Score=27.27 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 49 SGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKA 104 (224)
Q Consensus 49 ~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~ 104 (224)
...-..|+++.+-+++++..+-..+... .+. .+.+++++.-+++..+..
T Consensus 150 d~~~~~le~i~~~~~~ie~~l~~~~~~~---~l~----~l~~l~~~l~~lr~~l~~ 198 (322)
T COG0598 150 DNYFPVLEQIEDELEAIEDQLLASTTNE---ELE----RLGELRRSLVYLRRALAP 198 (322)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcCccHH---HHH----HHHHHHHHHHHHHHHHHh
Confidence 3344445555555555555554444331 122 455556555555555544
No 43
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.41 E-value=76 Score=26.90 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=37.0
Q ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHH
Q 027389 141 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL 206 (224)
Q Consensus 141 ~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il 206 (224)
.-+..-+..+-++-......++++-.=.+.|. .+.++++.+....+...+=-.+..++.++.
T Consensus 134 ~n~~~~n~el~~v~~im~~niedvl~rg~~l~----~l~~~~s~l~~~s~~y~~~a~~in~~sl~~ 195 (216)
T KOG0862|consen 134 RNLLKLNQELQDVQRIMVENLEDVLQRGEVLN----ALSSMASELSSESRKYPKTAKGINRKSLIR 195 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhchHHH----hhhhhhhcccHHHHhhHHHHHHHHHHHHHH
Confidence 34444555566666677777777765555553 455566666666666555555556665554
No 44
>PRK09759 small toxic polypeptide; Provisional
Probab=62.73 E-value=7.4 Score=25.22 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 027389 202 DTIILALVASVCTFLIFIYWV 222 (224)
Q Consensus 202 d~~Il~~vi~~~i~~~~~~~~ 222 (224)
+|.++.+++++|+-+++|.|+
T Consensus 3 ~k~~l~~liivCiTvL~f~~l 23 (50)
T PRK09759 3 QKYRLLSLIVICFTLLFFTWM 23 (50)
T ss_pred ceeeHHHHHHHHHHHHHHHHH
Confidence 456666677778777766665
No 45
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=62.07 E-value=13 Score=24.89 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=12.2
Q ss_pred HHHHHHHhhhhhhhHHHHHHHH
Q 027389 190 QILSSIKRKKSMDTIILALVAS 211 (224)
Q Consensus 190 ~ll~~I~rR~~rd~~Il~~vi~ 211 (224)
.+|++=.+|+++-.+++.++.+
T Consensus 31 eil~ker~R~r~~~~~~~li~a 52 (64)
T COG4068 31 EILNKERKRQRNFMILMFLILA 52 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566655555555566665543
No 46
>PHA02844 putative transmembrane protein; Provisional
Probab=61.54 E-value=12 Score=26.28 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 027389 203 TIILALVASVCTFLIFIYWV 222 (224)
Q Consensus 203 ~~Il~~vi~~~i~~~~~~~~ 222 (224)
.+|+..++++|++++++.++
T Consensus 50 ~~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 50 IWILTIIFVVFATFLTFLYL 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666655444
No 47
>PF12669 P12: Virus attachment protein p12 family
Probab=61.48 E-value=5.8 Score=26.43 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 027389 204 IILALVASVCTFLIF 218 (224)
Q Consensus 204 ~Il~~vi~~~i~~~~ 218 (224)
||++++|+..+++++
T Consensus 2 iII~~Ii~~~~~~v~ 16 (58)
T PF12669_consen 2 IIIGIIILAAVAYVA 16 (58)
T ss_pred eeHHHHHHHHHHHHH
Confidence 456656555555443
No 48
>PHA02650 hypothetical protein; Provisional
Probab=58.86 E-value=14 Score=26.26 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027389 204 IILALVASVCTFLIFIYWV 222 (224)
Q Consensus 204 ~Il~~vi~~~i~~~~~~~~ 222 (224)
+|+..++++|++++++.++
T Consensus 52 ~ii~i~~v~i~~l~~flYL 70 (81)
T PHA02650 52 FIFLIFSLIIVALFSFFVF 70 (81)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544443
No 49
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=58.28 E-value=98 Score=25.00 Aligned_cols=59 Identities=10% Similarity=0.175 Sum_probs=31.0
Q ss_pred HHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027389 159 ATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWV 222 (224)
Q Consensus 159 ~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il~~vi~~~i~~~~~~~~ 222 (224)
.+.+....|...++..+.|+..- ++...+-|...+.-.. +|++|.|++++.+++.+|.|
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~e---i~~lr~~iE~~K~~~l--r~~~g~i~~~~a~~la~~r~ 175 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTE---IANLRTEIESLKWDTL--RWLVGVIFGCVALVLAILRL 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666432 3334444443332222 47777666655566554443
No 50
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=57.22 E-value=2.7e+02 Score=29.80 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhh
Q 027389 145 RSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDT 203 (224)
Q Consensus 145 ~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~ 203 (224)
.+.+.+|..+..+.+.+.. =++....+-..+..++.+++...+.|........++.
T Consensus 1584 ~ai~~a~~~~~~a~~~l~k---v~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns 1639 (1758)
T KOG0994|consen 1584 DAIQGADRDIRLAQQLLAK---VQEETAAAEKLATSATQQLGELETRMEELKHKAAQNS 1639 (1758)
T ss_pred HHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334444444444443333 3455667777778888888888888888888777763
No 51
>PRK09738 small toxic polypeptide; Provisional
Probab=56.99 E-value=8.7 Score=25.11 Aligned_cols=21 Identities=19% Similarity=0.361 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 027389 202 DTIILALVASVCTFLIFIYWV 222 (224)
Q Consensus 202 d~~Il~~vi~~~i~~~~~~~~ 222 (224)
++..+.++|++|+-+++|.|+
T Consensus 5 ~~~~~~~livvCiTvL~f~~l 25 (52)
T PRK09738 5 RSPLVWCVLIVCLTLLIFTYL 25 (52)
T ss_pred cceehhhHHHHHHHHHHHHHH
Confidence 445555566677777666555
No 52
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=55.84 E-value=16 Score=29.61 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=21.0
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027389 196 KRKKSMDTIILALVASVCTFLIFIYWV 222 (224)
Q Consensus 196 ~rR~~rd~~Il~~vi~~~i~~~~~~~~ 222 (224)
+|-.+|+++|=+.||++.+.+++|++.
T Consensus 145 KR~Q~RHR~IG~~VlA~~VA~L~~~F~ 171 (215)
T PF05084_consen 145 KRTQKRHRLIGAVVLAVSVAMLTWFFL 171 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888988898888888877765
No 53
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=55.61 E-value=16 Score=25.52 Aligned_cols=18 Identities=11% Similarity=0.431 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027389 204 IILALVASVCTFLIFIYW 221 (224)
Q Consensus 204 ~Il~~vi~~~i~~~~~~~ 221 (224)
+|++.++++|++++++.+
T Consensus 51 ~ii~ii~v~ii~~l~flY 68 (72)
T PF12575_consen 51 LIISIIFVLIIVLLTFLY 68 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555566666654433
No 54
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=55.56 E-value=48 Score=20.86 Aligned_cols=49 Identities=8% Similarity=0.070 Sum_probs=39.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHH
Q 027389 142 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQ 190 (224)
Q Consensus 142 ~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ 190 (224)
.|..-...+-++-+++..+-..+..|.+.|..+...+..+...+....+
T Consensus 7 ~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~ 55 (60)
T cd00193 7 ELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANK 55 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666667777888889999999999999999999888887776655544
No 55
>PHA03164 hypothetical protein; Provisional
Probab=54.64 E-value=21 Score=25.22 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=17.2
Q ss_pred HHHHHHhhhhhhhH-HHHHHHHHHHHHH--HHHHH
Q 027389 191 ILSSIKRKKSMDTI-ILALVASVCTFLI--FIYWV 222 (224)
Q Consensus 191 ll~~I~rR~~rd~~-Il~~vi~~~i~~~--~~~~~ 222 (224)
--+.++.|+++=.+ |++|.++..|+|+ ++|.|
T Consensus 47 awnlwnnrRktftFlvLtgLaIamILfiifvlyvF 81 (88)
T PHA03164 47 AWNLWNNRRKTFTFLVLTGLAIAMILFIIFVLYVF 81 (88)
T ss_pred hHHHHHhhhheeehHHHHHHHHHHHHHHHHHHHhe
Confidence 44567777777765 4455443333333 34544
No 56
>PHA03054 IMV membrane protein; Provisional
Probab=54.59 E-value=18 Score=25.05 Aligned_cols=19 Identities=11% Similarity=0.413 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027389 204 IILALVASVCTFLIFIYWV 222 (224)
Q Consensus 204 ~Il~~vi~~~i~~~~~~~~ 222 (224)
+|+..++++|++++++.++
T Consensus 51 ~ii~l~~v~~~~l~~flYL 69 (72)
T PHA03054 51 LIIIFFIVLILLLLIYLYL 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555666666655444
No 57
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=54.18 E-value=23 Score=21.47 Aligned_cols=16 Identities=13% Similarity=0.690 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 027389 207 ALVASVCTFLIFIYWV 222 (224)
Q Consensus 207 ~~vi~~~i~~~~~~~~ 222 (224)
+...+..+++++++||
T Consensus 15 ~~llflv~imliif~f 30 (43)
T PF11395_consen 15 SFLLFLVIIMLIIFWF 30 (43)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4344344445555665
No 58
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=54.01 E-value=2.9e+02 Score=29.06 Aligned_cols=60 Identities=15% Similarity=0.234 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027389 49 SGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLE 113 (224)
Q Consensus 49 ~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~~~~R~eLl~ 113 (224)
.+|++.++++.+..+.++.++... ...+.-++....+++.+++..++.+++.+.+-+.+.
T Consensus 319 teiea~i~~~~~e~~~~d~Ei~~~-----r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~ 378 (1074)
T KOG0250|consen 319 TEIEAKIGELKDEVDAQDEEIEEA-----RKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLE 378 (1074)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666776667766665442 134555666777777777777777777665555554
No 59
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=53.94 E-value=82 Score=25.72 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027389 47 LESGIDWLLKQLQQVNIQMQDW 68 (224)
Q Consensus 47 l~~eI~~~L~~~~~~~~~m~~~ 68 (224)
++..++..-.++++-|++|+.+
T Consensus 114 L~~~Vd~~~~eL~~eI~~L~~~ 135 (171)
T PF04799_consen 114 LCQQVDQTKNELEDEIKQLEKE 135 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 60
>PHA02819 hypothetical protein; Provisional
Probab=53.93 E-value=19 Score=24.95 Aligned_cols=19 Identities=26% Similarity=0.697 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027389 204 IILALVASVCTFLIFIYWV 222 (224)
Q Consensus 204 ~Il~~vi~~~i~~~~~~~~ 222 (224)
+|+..++++|++++++.++
T Consensus 49 ~ii~l~~~~~~~~~~flYL 67 (71)
T PHA02819 49 LIIGLVTIVFVIIFIIFYL 67 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556566666666655444
No 61
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=53.88 E-value=7.8 Score=28.69 Aligned_cols=14 Identities=36% Similarity=0.878 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 027389 204 IILALVASVCTFLI 217 (224)
Q Consensus 204 ~Il~~vi~~~i~~~ 217 (224)
++++.+.++|++++
T Consensus 64 ili~lls~v~IlVi 77 (101)
T PF06024_consen 64 ILISLLSFVCILVI 77 (101)
T ss_pred hHHHHHHHHHHHHH
Confidence 33444444555444
No 62
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=53.68 E-value=39 Score=23.23 Aligned_cols=47 Identities=17% Similarity=0.105 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 027389 47 LESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYR 97 (224)
Q Consensus 47 l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~r 97 (224)
...+.+.+|++++--+..+..-. .+.+...+..|+..|..++.+|++
T Consensus 33 ~l~ea~~~l~qMe~E~~~~p~s~----r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 33 DLDEAEELLKQMELEVRSLPPSE----RNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHCTS-HHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33455566666665555553222 133557788899999999888864
No 63
>PHA02975 hypothetical protein; Provisional
Probab=53.44 E-value=20 Score=24.74 Aligned_cols=19 Identities=11% Similarity=0.443 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027389 204 IILALVASVCTFLIFIYWV 222 (224)
Q Consensus 204 ~Il~~vi~~~i~~~~~~~~ 222 (224)
+|+..++++|++++++.++
T Consensus 47 ~ii~i~~v~~~~~~~flYL 65 (69)
T PHA02975 47 LIIFIIFITCIAVFTFLYL 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555666666655444
No 64
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=53.31 E-value=68 Score=21.65 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027389 9 ALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGG 73 (224)
Q Consensus 9 ~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~ 73 (224)
+|.++++.+-..+-.+...|. ..+..+.+..+..-..+|+++..++...+
T Consensus 2 ~Lw~~F~~a~~~~~~~~~~~~---------------~~~~~~~~~n~~~K~~Li~~~~~l~~~~d 51 (77)
T PF03993_consen 2 ELWKRFRAACDAFFDRRKEFF---------------EEQDAEREENLEKKEALIEEAEALAESED 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 455666666666655555554 44666788889999999999998876554
No 65
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=53.23 E-value=1.5e+02 Score=25.56 Aligned_cols=17 Identities=29% Similarity=0.564 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027389 7 WDALRKQARKLEAQLDE 23 (224)
Q Consensus 7 w~~lr~~ar~lE~~i~~ 23 (224)
++++..+..++|++|+.
T Consensus 54 ~e~le~qv~~~e~ei~~ 70 (239)
T COG1579 54 LEDLENQVSQLESEIQE 70 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555543
No 66
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=52.74 E-value=16 Score=24.11 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Q 027389 201 MDTIILALVASVCTFLIFIYWVT 223 (224)
Q Consensus 201 rd~~Il~~vi~~~i~~~~~~~~~ 223 (224)
+|....-.++++|++|++++.|.
T Consensus 11 ~d~~~~lLiliis~~f~lI~~l~ 33 (61)
T PF06692_consen 11 GDYSGPLLILIISFVFFLITSLG 33 (61)
T ss_pred ccchhHHHHHHHHHHHHHHhhhc
Confidence 45555555666788888777764
No 67
>PHA02955 hypothetical protein; Provisional
Probab=52.25 E-value=14 Score=31.16 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 027389 203 TIILALVASVCTFLIFIYWVT 223 (224)
Q Consensus 203 ~~Il~~vi~~~i~~~~~~~~~ 223 (224)
++|+++|++++++++++|+.+
T Consensus 181 w~ii~~v~ii~~~v~l~yikR 201 (213)
T PHA02955 181 WFIIYIVLCLLILIILGYIYR 201 (213)
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 456677776666666666543
No 68
>COG4640 Predicted membrane protein [Function unknown]
Probab=51.66 E-value=11 Score=34.86 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 027389 204 IILALVASVCTFLIFIYWVTK 224 (224)
Q Consensus 204 ~Il~~vi~~~i~~~~~~~~~k 224 (224)
+.+++++++||+++++|+|.|
T Consensus 53 i~was~a~~lIlii~~~~fgk 73 (465)
T COG4640 53 IPWASGAFILILIIILFFFGK 73 (465)
T ss_pred ehhHHHHHHHHHHHHHHHHhh
Confidence 445777788888888887754
No 69
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=51.14 E-value=18 Score=31.23 Aligned_cols=27 Identities=4% Similarity=0.191 Sum_probs=20.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 027389 197 RKKSMDTIILALVASVCTFLIFIYWVT 223 (224)
Q Consensus 197 rR~~rd~~Il~~vi~~~i~~~~~~~~~ 223 (224)
.|..|.-+++++++.-|+||++.|+++
T Consensus 215 nr~~R~~f~~Y~l~LH~lvf~~l~~~~ 241 (248)
T PF08172_consen 215 NRTTRMLFFFYCLGLHLLVFFVLYYMS 241 (248)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777788888888888777763
No 70
>PHA02692 hypothetical protein; Provisional
Probab=51.10 E-value=23 Score=24.57 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHH
Q 027389 208 LVASVCTFLIFIYWV 222 (224)
Q Consensus 208 ~vi~~~i~~~~~~~~ 222 (224)
.++++|++++++.++
T Consensus 53 ~~~~~~~vll~flYL 67 (70)
T PHA02692 53 LIAAAIGVLLCFHYL 67 (70)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666655444
No 71
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=49.13 E-value=23 Score=25.20 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027389 205 ILALVASVCTFLIFIYW 221 (224)
Q Consensus 205 Il~~vi~~~i~~~~~~~ 221 (224)
++|.+++++++.+++|+
T Consensus 12 v~GM~~VF~fL~lLi~~ 28 (82)
T TIGR01195 12 VLGMGIVFLFLSLLIYA 28 (82)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555444443
No 72
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=48.75 E-value=2e+02 Score=25.65 Aligned_cols=32 Identities=3% Similarity=-0.078 Sum_probs=26.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 027389 44 ENDLESGIDWLLKQLQQVNIQMQDWVSSGGSE 75 (224)
Q Consensus 44 ~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~ 75 (224)
....+.|+..-+.+...++.+++..+.+.+|+
T Consensus 73 y~~~c~EL~~~I~egr~~~~~~E~~~~~~nPp 104 (325)
T PF08317_consen 73 YQFSCRELKKYISEGRQIFEEIEEETYESNPP 104 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 34577889999999999999999999887765
No 73
>PTZ00234 variable surface protein Vir12; Provisional
Probab=48.73 E-value=13 Score=34.69 Aligned_cols=18 Identities=6% Similarity=0.237 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027389 85 QEILQDLTQEFYRLRSSL 102 (224)
Q Consensus 85 r~~L~~~~~ef~rlk~~~ 102 (224)
+..|.+|=..|..++..+
T Consensus 148 rK~LYDYfkNYd~Ik~~i 165 (433)
T PTZ00234 148 RKLSYIYMKNYNDIKSKV 165 (433)
T ss_pred HHHHHHHHHhHHHHHhhc
Confidence 556777777777776543
No 74
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.38 E-value=2e+02 Score=25.60 Aligned_cols=29 Identities=14% Similarity=0.058 Sum_probs=22.8
Q ss_pred HHhHHHHHHHHhHHHHhhccCCcHHHHHH
Q 027389 165 VFQRSTFGGINSKLSNVSSRLPSVNQILS 193 (224)
Q Consensus 165 ~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~ 193 (224)
..|-+++.++-.-+......+.....=+.
T Consensus 230 e~QgEmvd~IE~nV~~A~~~V~~g~~~~~ 258 (297)
T KOG0810|consen 230 ESQGEMVDRIENNVENAVDYVEQGVDHLK 258 (297)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999888888777555444
No 75
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=48.37 E-value=1.8e+02 Score=24.99 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027389 5 SSWDALRKQARKLEAQLDEQMHSYRKL 31 (224)
Q Consensus 5 ~~w~~lr~~ar~lE~~i~~kl~~~s~~ 31 (224)
+.|+++=.-+.+++.++..-...-+.+
T Consensus 22 P~~~d~v~ka~K~~saL~a~~~A~~~f 48 (231)
T cd07643 22 PLWEDFVSKATKLHSQLRATIVATSAF 48 (231)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999998877665555
No 76
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=48.03 E-value=36 Score=19.34 Aligned_cols=18 Identities=11% Similarity=0.181 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027389 204 IILALVASVCTFLIFIYW 221 (224)
Q Consensus 204 ~Il~~vi~~~i~~~~~~~ 221 (224)
+|.|++++++++..++|.
T Consensus 5 vi~g~llv~lLl~YLvYA 22 (29)
T PRK14750 5 IVCGALLVLLLLGYLVYA 22 (29)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666555555555554
No 77
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=47.43 E-value=32 Score=21.72 Aligned_cols=6 Identities=17% Similarity=0.185 Sum_probs=2.6
Q ss_pred HHHHHh
Q 027389 218 FIYWVT 223 (224)
Q Consensus 218 ~~~~~~ 223 (224)
++|.|+
T Consensus 26 ~~w~~~ 31 (49)
T PF05545_consen 26 VIWAYR 31 (49)
T ss_pred HHHHHc
Confidence 444443
No 78
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=46.46 E-value=52 Score=22.01 Aligned_cols=28 Identities=0% Similarity=0.125 Sum_probs=19.3
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027389 195 IKRKKSMDTIILALVASVCTFLIFIYWV 222 (224)
Q Consensus 195 I~rR~~rd~~Il~~vi~~~i~~~~~~~~ 222 (224)
-.++.++.+-.-..+.+++++|+++|+|
T Consensus 28 ~~k~qk~~~~~~~i~~~~~i~~l~v~~~ 55 (59)
T PF09889_consen 28 YRKRQKRMRKTQYIFFGIFILFLAVWIF 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666678887777777777766
No 79
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=45.20 E-value=89 Score=24.27 Aligned_cols=69 Identities=20% Similarity=0.364 Sum_probs=44.2
Q ss_pred HHhhHHhhhHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHhHHHHhhcc----CCcHHHHHHHHHhhhhhhhHHH
Q 027389 138 KEHASINRSTGQMDSVISQA-------QATLGALVFQRSTFGGINSKLSNVSSR----LPSVNQILSSIKRKKSMDTIIL 206 (224)
Q Consensus 138 ~e~~~L~~S~~~ld~~l~~g-------~~~l~~L~~Qr~~L~~~~~rl~~~~~~----l~~s~~ll~~I~rR~~rd~~Il 206 (224)
+-.+.|+.-+..+.+++.|| .+++.--.+|+..|..++.++..+..+ +|.+-+.++- ..++.+.+
T Consensus 49 ~is~kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkitsmls~----vmkqny~l 124 (177)
T PF12495_consen 49 QISDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITSMLSD----VMKQNYVL 124 (177)
T ss_pred HhcccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHhhhhh
Confidence 34445555566667788777 456666678999999999998887764 4555554443 34455555
Q ss_pred HHHH
Q 027389 207 ALVA 210 (224)
Q Consensus 207 ~~vi 210 (224)
..-|
T Consensus 125 slqi 128 (177)
T PF12495_consen 125 SLQI 128 (177)
T ss_pred hhhH
Confidence 4433
No 80
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=44.82 E-value=24 Score=25.56 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhC
Q 027389 203 TIILALVASVCTFLIFIYWVTK 224 (224)
Q Consensus 203 ~~Il~~vi~~~i~~~~~~~~~k 224 (224)
.+.+.++++++++++++|..+|
T Consensus 62 ~fg~~~vVGvvLlv~viwLl~~ 83 (87)
T PF11190_consen 62 DFGATVVVGVVLLVFVIWLLTK 83 (87)
T ss_pred HhhhHHHHHHHHHHHHHHHHHH
Confidence 4677777778887777766554
No 81
>PRK06287 cobalt transport protein CbiN; Validated
Probab=42.57 E-value=26 Score=26.24 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027389 204 IILALVASVCTFLIFIYWV 222 (224)
Q Consensus 204 ~Il~~vi~~~i~~~~~~~~ 222 (224)
.|+++||++.+++.++|.+
T Consensus 79 ~ilsgiiGv~i~l~l~~~~ 97 (107)
T PRK06287 79 EIIAMVIGTLLVLALAYGV 97 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777788777776665544
No 82
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=42.34 E-value=1.5e+02 Score=22.61 Aligned_cols=124 Identities=16% Similarity=0.206 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHH
Q 027389 12 KQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDL 91 (224)
Q Consensus 12 ~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~ 91 (224)
.+...++.++.........+.. ....+..+++..-..+...=+.+..++...... . ..+...|+.+.++
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~---------~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~-~-~~L~~lr~e~~~~ 71 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEE---------QLQSLREDLESQAKIAQEAQQKYERELVKHAED-I-KELQQLREELQEL 71 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-H-HHHHHHHHHHHHH
Confidence 3445555555555544444332 224466666666666777777777666554321 1 3466666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027389 92 TQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTF 171 (224)
Q Consensus 92 ~~ef~rlk~~~~~~~~R~eLl~~~~~~~~~~~d~~~~~~~~~~~ll~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L 171 (224)
+.++..++.....+.. .| -....+...-...+..=+..+..-..+|..|+..|
T Consensus 72 ~~~~~~l~~~~~~a~~--~l-------------------------~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 72 QQEINELKAEAESAKA--EL-------------------------EESEASWEEQKEQLEKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHH--HH-------------------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655544322 22 11222333334455555666667778888888877
Q ss_pred HH
Q 027389 172 GG 173 (224)
Q Consensus 172 ~~ 173 (224)
..
T Consensus 125 h~ 126 (132)
T PF07926_consen 125 HD 126 (132)
T ss_pred HH
Confidence 54
No 83
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=42.26 E-value=39 Score=24.34 Aligned_cols=11 Identities=45% Similarity=0.643 Sum_probs=4.7
Q ss_pred HHHHHHhhhhh
Q 027389 191 ILSSIKRKKSM 201 (224)
Q Consensus 191 ll~~I~rR~~r 201 (224)
++++..||..=
T Consensus 4 i~kK~K~k~~l 14 (96)
T PF13800_consen 4 ILKKAKRKSRL 14 (96)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 84
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=41.79 E-value=33 Score=23.70 Aligned_cols=15 Identities=13% Similarity=0.383 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 027389 205 ILALVASVCTFLIFI 219 (224)
Q Consensus 205 Il~~vi~~~i~~~~~ 219 (224)
|+|..++|+++++++
T Consensus 9 i~Gm~iVF~~L~lL~ 23 (79)
T PF04277_consen 9 IIGMGIVFLVLILLI 23 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445554444444433
No 85
>PF08641 Mis14: Kinetochore protein Mis14 like; InterPro: IPR013950 Mis14 is a kinetochore protein which is known to be recruited to kinetochores independently of CENP-A [].
Probab=41.26 E-value=1.7e+02 Score=22.72 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027389 47 LESGIDWLLKQLQQVNIQMQDWVSSGG 73 (224)
Q Consensus 47 l~~eI~~~L~~~~~~~~~m~~~v~~~~ 73 (224)
+-..|..+..++++++-....+=+..|
T Consensus 38 L~~rv~~l~~~~e~~~v~va~lRr~~P 64 (139)
T PF08641_consen 38 LNERVRSLYDQLEDLTVEVAQLRRDYP 64 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444555555556655555555444444
No 86
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=41.04 E-value=1.6e+02 Score=22.27 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=31.0
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 42 AAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRS 100 (224)
Q Consensus 42 ~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~ 100 (224)
+.......+|+....++.+.++.+....... . -+..+..++..+..|.....++-.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~y~~~~~~~~~ 130 (181)
T PF12729_consen 75 EERQEIEKEIDEARAEIDEALEEYEKLILSP--E-EKQLLEEFKEAWKAYRKLRDQVIE 130 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777776666432211 1 123456666666666555555443
No 87
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=41.00 E-value=51 Score=23.73 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=6.2
Q ss_pred HHHhhhhhhhHHH
Q 027389 194 SIKRKKSMDTIIL 206 (224)
Q Consensus 194 ~I~rR~~rd~~Il 206 (224)
+|-+|.++-.++-
T Consensus 3 ~i~kK~K~k~~l~ 15 (96)
T PF13800_consen 3 KILKKAKRKSRLR 15 (96)
T ss_pred hHHHHHHHHHHHH
Confidence 4445555544433
No 88
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=40.51 E-value=71 Score=20.30 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 027389 8 DALRKQARKLEAQLDEQMHSYRKLV 32 (224)
Q Consensus 8 ~~lr~~ar~lE~~i~~kl~~~s~~~ 32 (224)
+.||.+...||.++...-++|+++-
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999888888873
No 89
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=40.16 E-value=22 Score=32.02 Aligned_cols=28 Identities=32% Similarity=0.306 Sum_probs=12.9
Q ss_pred HHhhhhhhhHHH---HHHHHHHHHHHHHHHH
Q 027389 195 IKRKKSMDTIIL---ALVASVCTFLIFIYWV 222 (224)
Q Consensus 195 I~rR~~rd~~Il---~~vi~~~i~~~~~~~~ 222 (224)
...+..++.+++ ++++++++.++.+|||
T Consensus 103 ~~~~~~~~~~~~~~~~lv~~vvl~l~~~www 133 (331)
T PRK10856 103 GKRRKKRDGWLMTFTWLVLFVVIGLTGAWWW 133 (331)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHHHh
Confidence 345555665444 4444333444434444
No 90
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=40.07 E-value=27 Score=25.76 Aligned_cols=16 Identities=19% Similarity=0.469 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 027389 205 ILALVASVCTFLIFIY 220 (224)
Q Consensus 205 Il~~vi~~~i~~~~~~ 220 (224)
++++++++.++++++|
T Consensus 68 lls~v~IlVily~IyY 83 (101)
T PF06024_consen 68 LLSFVCILVILYAIYY 83 (101)
T ss_pred HHHHHHHHHHHhhheE
Confidence 3434444444455444
No 91
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=39.79 E-value=1.6e+02 Score=22.05 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHH
Q 027389 15 RKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQM 65 (224)
Q Consensus 15 r~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m 65 (224)
-++.+++...+.....+-.+.+ +.++.+-..+-..|+..|.+..+-+...
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg-~~a~~e~~~lR~r~~~~Lk~~r~rl~~~ 60 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSG-SLAGDEAEELRSKAESALKEARDRLGDT 60 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444443322 2234445556666666666666444333
No 92
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=39.47 E-value=85 Score=21.73 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=30.0
Q ss_pred HHHHhhccCCcHHHHHHHHHhhhhhhhHHH-HHHHHHHHHHHHHH
Q 027389 177 KLSNVSSRLPSVNQILSSIKRKKSMDTIIL-ALVASVCTFLIFIY 220 (224)
Q Consensus 177 rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il-~~vi~~~i~~~~~~ 220 (224)
......+-++.+..-++++..-.+++.+.- ..|+++++++.+++
T Consensus 16 ~~k~~~~f~~~~~~E~~KV~WPsrke~~~~t~~Vl~~v~~~s~~~ 60 (73)
T COG0690 16 KGKKFFNFFKEVRKELKKVVWPTRKELIRSTLIVLVVVAFFSLFL 60 (73)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677888899999999999998765 44444555544443
No 93
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=39.17 E-value=1.1e+02 Score=20.09 Aligned_cols=13 Identities=15% Similarity=0.480 Sum_probs=5.1
Q ss_pred HhhHHhhhHHHHH
Q 027389 139 EHASINRSTGQMD 151 (224)
Q Consensus 139 e~~~L~~S~~~ld 151 (224)
.++.|.+++..++
T Consensus 34 Qre~L~~~~~kl~ 46 (66)
T PF12352_consen 34 QREQLKRVRDKLD 46 (66)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444433333
No 94
>PF15431 TMEM190: Transmembrane protein 190
Probab=38.96 E-value=46 Score=25.26 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=12.5
Q ss_pred hhhhHHHH---HHHHHHHHHHHHHHHhC
Q 027389 200 SMDTIILA---LVASVCTFLIFIYWVTK 224 (224)
Q Consensus 200 ~rd~~Il~---~vi~~~i~~~~~~~~~k 224 (224)
++..|.++ +...++++.+.+|||+|
T Consensus 58 rKHmWaL~wtC~gll~Li~~iclFWWAk 85 (134)
T PF15431_consen 58 RKHMWALGWTCGGLLLLICSICLFWWAK 85 (134)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34566662 22234445555666654
No 95
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=38.94 E-value=2.3e+02 Score=25.35 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027389 46 DLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLED 114 (224)
Q Consensus 46 ~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~~~~R~eLl~~ 114 (224)
.+...|..+=+++..+-.+|...-.. .....+.|-......+.+-.|++..+....+|-+-|.+
T Consensus 226 ~~~shI~~Lr~EV~RLR~qL~~sq~e-----~~~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R 289 (310)
T PF09755_consen 226 RLSSHIRSLRQEVSRLRQQLAASQQE-----HSEKMAQYLQEEKEIREENRRLQRKLQREVERREALCR 289 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555655555555555555421111 11346667778889999999999999988888887765
No 96
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=38.92 E-value=60 Score=18.56 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027389 204 IILALVASVCTFLIFIYW 221 (224)
Q Consensus 204 ~Il~~vi~~~i~~~~~~~ 221 (224)
+++|+++++.+++.++|.
T Consensus 5 ~~l~~~va~~L~vYL~~A 22 (29)
T PRK14759 5 YSLAGAVSLGLLIYLTYA 22 (29)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666555555554
No 97
>PF01848 HOK_GEF: Hok/gef family; InterPro: IPR000021 The hok/gef family of Gram-negative bacterial proteins are toxic to cells when over-expressed, killing the cells from within by interfering with a vital function in the cell membrane []. Some family members (flm) increase the stability of unstable RNA [], some (pnd) induce the degradation of stable RNA at higher than optimum growth temperatures [], while others affect the release of cellular magnesium by membrane alterations []. The proteins are short (50-70 residues), consisting of an N-terminal hydrophobic (possibly membrane spanning) domain, and a C-terminal periplasmic region, which contains the toxic domain. The C-terminal region contains a conserved cysteine residue that mediates homo-dimerisation in the gef protein, although dimerisation is not necessary for the toxic effect [].; GO: 0016020 membrane
Probab=38.89 E-value=22 Score=22.29 Aligned_cols=18 Identities=17% Similarity=0.611 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027389 205 ILALVASVCTFLIFIYWV 222 (224)
Q Consensus 205 Il~~vi~~~i~~~~~~~~ 222 (224)
.+.++|++|+-++++.|+
T Consensus 3 ~l~~liviCiTvl~~~~l 20 (43)
T PF01848_consen 3 ALLCLIVICITVLIFTWL 20 (43)
T ss_pred eehhHHHHHHHHHHHHHH
Confidence 345566677766666555
No 98
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=38.77 E-value=20 Score=24.90 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027389 207 ALVASVCTFLIFIYWVT 223 (224)
Q Consensus 207 ~~vi~~~i~~~~~~~~~ 223 (224)
-|+.++|++.+++|..+
T Consensus 12 QG~fA~LFv~Ll~yvlK 28 (71)
T PF10960_consen 12 QGIFAVLFVWLLFYVLK 28 (71)
T ss_pred cCcHHHHHHHHHHHHHH
Confidence 45666777777777653
No 99
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.64 E-value=2e+02 Score=22.83 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 7 WDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWV 69 (224)
Q Consensus 7 w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v 69 (224)
-.+|+.+...|+.++...-+.+..+.+..+ -..+...|..+=.+...+-+++..+-
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t-------~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPT-------NEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777776666666666665421 13355555555455555555555433
No 100
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=38.15 E-value=78 Score=19.50 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027389 85 QEILQDLTQEFYRLRSSLKAKQEHASL 111 (224)
Q Consensus 85 r~~L~~~~~ef~rlk~~~~~~~~R~eL 111 (224)
+++|.+.++|+++.|..+-.+ -|.+|
T Consensus 10 qEIL~EvrkEl~K~K~EIIeA-~~~eL 35 (40)
T PF08776_consen 10 QEILEEVRKELQKVKEEIIEA-IRQEL 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 678999999999999887665 35555
No 101
>PF13190 PDGLE: PDGLE domain
Probab=37.75 E-value=42 Score=24.08 Aligned_cols=22 Identities=27% Similarity=0.310 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhC
Q 027389 203 TIILALVASVCTFLIFIYWVTK 224 (224)
Q Consensus 203 ~~Il~~vi~~~i~~~~~~~~~k 224 (224)
-.|+++++++.+++.++|...|
T Consensus 66 g~~lsgivGv~~~~~l~~~i~~ 87 (88)
T PF13190_consen 66 GTILSGIVGVALTLALAYGIGK 87 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3578888888888887776543
No 102
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=37.38 E-value=47 Score=18.50 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 027389 206 LALVASVCTFLIFIYW 221 (224)
Q Consensus 206 l~~vi~~~i~~~~~~~ 221 (224)
+++++++.+++.++|.
T Consensus 2 i~~~l~~~L~~YL~~a 17 (26)
T TIGR02115 2 ILLVLAVGLFIYLFYA 17 (26)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555554
No 103
>COG4420 Predicted membrane protein [Function unknown]
Probab=36.96 E-value=63 Score=26.83 Aligned_cols=45 Identities=2% Similarity=-0.037 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHH
Q 027389 146 STGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQ 190 (224)
Q Consensus 146 S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ 190 (224)
+...+-+.+.....+..+..+|.+.=..+.+|+-+--..|++|..
T Consensus 15 ~~~~~~~~l~~~~~i~~~~~e~~~~~~t~gdR~ad~ia~f~Gsw~ 59 (191)
T COG4420 15 VPARLFELLRENTPISSDRREEFEDGETFGDRVADKIARFGGSWA 59 (191)
T ss_pred hHHHHhHHHHhcchhhcchHHHHhcccchhhhHHHHHHHHcCChH
Confidence 334444455555556666777777767777777777777777754
No 104
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=36.69 E-value=37 Score=25.04 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 027389 207 ALVASVCTFLIF 218 (224)
Q Consensus 207 ~~vi~~~i~~~~ 218 (224)
|++++++++|++
T Consensus 53 GIli~f~i~f~~ 64 (103)
T PF06422_consen 53 GILIAFWIFFIV 64 (103)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 105
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=36.59 E-value=27 Score=26.60 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHH
Q 027389 204 IILALVASVCTFLI 217 (224)
Q Consensus 204 ~Il~~vi~~~i~~~ 217 (224)
+|+|.|++.||+++
T Consensus 90 l~LGvV~GG~i~vL 103 (127)
T PF06040_consen 90 LILGVVAGGLIAVL 103 (127)
T ss_pred hhHHHHhccHHHHH
Confidence 56777777776555
No 106
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.40 E-value=1e+02 Score=26.10 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHHH
Q 027389 150 MDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA 207 (224)
Q Consensus 150 ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il~ 207 (224)
++|++..| ++++.|..=..-+....++... ....|.++..=+++--+
T Consensus 154 iedvl~rg-~~l~~l~~~~s~l~~~s~~y~~----------~a~~in~~sl~~~~aa~ 200 (216)
T KOG0862|consen 154 LEDVLQRG-EVLNALSSMASELSSESRKYPK----------TAKGINRKSLIRKYAAY 200 (216)
T ss_pred HHHHHhhc-hHHHhhhhhhhcccHHHHhhHH----------HHHHHHHHHHHHHHHHH
Confidence 44544433 4555555555555544444333 23444555554554433
No 107
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=35.70 E-value=1.7e+02 Score=21.14 Aligned_cols=77 Identities=25% Similarity=0.311 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 22 DEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSS 101 (224)
Q Consensus 22 ~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~ 101 (224)
+.++..+.+...++-++ ...+..+...+.+++.-+-++++ ..| .+.||-..-..++.++++++.=
T Consensus 2 EdkI~rLE~~~~g~l~~-----~~~~~~e~~~L~eEI~~Lr~qve----~nP------evtr~A~EN~rL~ee~rrl~~f 66 (86)
T PF12711_consen 2 EDKIKRLEKLLDGKLPS-----ESYLEEENEALKEEIQLLREQVE----HNP------EVTRFAMENIRLREELRRLQSF 66 (86)
T ss_pred chHHHHHHHHhcCCCCc-----cchhHHHHHHHHHHHHHHHHHHH----hCH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777766654322 12233344455555544445544 332 3777777888888888888766
Q ss_pred HHHHHHHHHhhcc
Q 027389 102 LKAKQEHASLLED 114 (224)
Q Consensus 102 ~~~~~~R~eLl~~ 114 (224)
. ...+|+-++..
T Consensus 67 ~-~~gerE~l~~e 78 (86)
T PF12711_consen 67 Y-VEGEREMLLQE 78 (86)
T ss_pred H-HhhHHHHHHHH
Confidence 6 55677777654
No 108
>PHA02902 putative IMV membrane protein; Provisional
Probab=35.59 E-value=54 Score=22.37 Aligned_cols=19 Identities=26% Similarity=0.648 Sum_probs=9.4
Q ss_pred hhHHH--HHHHHHHHHHHHHH
Q 027389 202 DTIIL--ALVASVCTFLIFIY 220 (224)
Q Consensus 202 d~~Il--~~vi~~~i~~~~~~ 220 (224)
|.+++ .+|+.+|.+++..|
T Consensus 4 dtfvi~~v~v~Ivclliya~Y 24 (70)
T PHA02902 4 DTFVILAVIVIIFCLLIYAAY 24 (70)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 44433 44445555555444
No 109
>PF13997 YqjK: YqjK-like protein
Probab=35.43 E-value=1.5e+02 Score=20.49 Aligned_cols=50 Identities=18% Similarity=0.134 Sum_probs=36.3
Q ss_pred HHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 027389 161 LGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCT 214 (224)
Q Consensus 161 l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il~~vi~~~i 214 (224)
+.....||.-|-.......++...+...-..+..+.. .-++.+|+++++.
T Consensus 2 l~qi~qQR~~La~~~~~w~~~ta~~Dr~w~~l~~lr~----~~~l~~g~~a~~~ 51 (73)
T PF13997_consen 2 LRQIQQQRLDLAANAEPWLEATAPYDRGWQTLRSLRR----HPILGSGVLALYG 51 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHH----hHHHHHHHHHHHH
Confidence 4567889999999999999999999888888775432 2334455555443
No 110
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=35.11 E-value=1.8e+02 Score=21.29 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 027389 47 LESGIDWLLKQLQQVNIQMQDWVS 70 (224)
Q Consensus 47 l~~eI~~~L~~~~~~~~~m~~~v~ 70 (224)
-+++|...|++++.++..-..-..
T Consensus 28 ~Er~v~~kLneLd~Li~eA~~r~~ 51 (109)
T PF03980_consen 28 EERDVVEKLNELDKLIEEAKERKN 51 (109)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhHh
Confidence 346788888888888887665544
No 111
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.10 E-value=5.6e+02 Score=26.99 Aligned_cols=43 Identities=12% Similarity=0.194 Sum_probs=25.9
Q ss_pred HhhHHhhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHh
Q 027389 139 EHASINRSTGQ-MDSVISQAQATLGALVFQRSTFGGINSKLSNV 181 (224)
Q Consensus 139 e~~~L~~S~~~-ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~ 181 (224)
-...++++-+. .-++++.+..--.+|..=++++..=..++..+
T Consensus 973 k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~kt 1016 (1174)
T KOG0933|consen 973 KKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKT 1016 (1174)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33445554332 34777777777777777777776666655443
No 112
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.08 E-value=43 Score=25.80 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=6.0
Q ss_pred HHHHHHHHHH
Q 027389 204 IILALVASVC 213 (224)
Q Consensus 204 ~Il~~vi~~~ 213 (224)
.+++|||++.
T Consensus 72 gv~aGvIg~I 81 (122)
T PF01102_consen 72 GVMAGVIGII 81 (122)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4667776543
No 113
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=34.88 E-value=75 Score=18.03 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 027389 203 TIILALVASVCTFLIFIYWV 222 (224)
Q Consensus 203 ~~Il~~vi~~~i~~~~~~~~ 222 (224)
.||+|...+|++-++.-.|+
T Consensus 5 aWilG~~lA~~~~i~~a~wl 24 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAMWL 24 (28)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 47888777666655544444
No 114
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=34.76 E-value=87 Score=19.84 Aligned_cols=23 Identities=22% Similarity=0.334 Sum_probs=12.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 027389 198 KKSMDTIILALVASVCTFLIFIY 220 (224)
Q Consensus 198 R~~rd~~Il~~vi~~~i~~~~~~ 220 (224)
+.-++-+|=.+.|.+|++++.+.
T Consensus 26 ~~lq~lfvnf~lilicllli~ii 48 (52)
T TIGR01294 26 QNLQNLFINFCLILICLLLICII 48 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666676666443
No 115
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=34.52 E-value=84 Score=17.31 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027389 83 RHQEILQDLTQEFYRLRSSLK 103 (224)
Q Consensus 83 r~r~~L~~~~~ef~rlk~~~~ 103 (224)
.|...|..|..|+.+.+....
T Consensus 2 ~Yqakla~YqaeLa~vqk~na 22 (25)
T PF06696_consen 2 DYQAKLAQYQAELARVQKANA 22 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhh
Confidence 467788888888888876653
No 116
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=34.04 E-value=51 Score=26.78 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 50 GIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSL 102 (224)
Q Consensus 50 eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~ 102 (224)
++|..++++-+=+--|+.++.+- ..+.-.+||+++.+.|+|+|+ -++...
T Consensus 4 D~EsklN~AIERnalLE~ELdEK--E~L~~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELDEK--ENLREEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHCH---------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 34444444443333444444221 123345899999999999999 444433
No 117
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=33.92 E-value=1.8e+02 Score=20.99 Aligned_cols=66 Identities=11% Similarity=0.043 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc-----hhHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 027389 5 SSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVD-----AAENDLESGIDWLLKQLQQVNIQMQDWVS 70 (224)
Q Consensus 5 ~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~-----~~~~~l~~eI~~~L~~~~~~~~~m~~~v~ 70 (224)
..|-..-.+.+.-=..|...+..+.++-....++... ..-..+..+|.....++...+..|+....
T Consensus 4 ~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~ 74 (117)
T smart00503 4 DEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENL 74 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3455555555555556666666666665443322111 12345666677777777777777766544
No 118
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=33.20 E-value=2.3e+02 Score=22.99 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhh
Q 027389 150 MDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMD 202 (224)
Q Consensus 150 ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd 202 (224)
+.+.+........--..|.........++..+-..+-.....-..|..+..+.
T Consensus 38 v~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id~~A~~~ 90 (180)
T PF04678_consen 38 VKEAVHRLLPLLNVEEYQNSRERQLRKRLEELRQELAPLEKIKQEIDEKAEKR 90 (180)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333332233333333344455555555545555555555555444
No 119
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=33.16 E-value=6.6e+02 Score=27.18 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027389 51 IDWLLKQLQQVNIQMQDWVS 70 (224)
Q Consensus 51 I~~~L~~~~~~~~~m~~~v~ 70 (224)
.+....++..++.++..++.
T Consensus 1466 ~~~s~~el~~Li~~v~~Flt 1485 (1758)
T KOG0994|consen 1466 MEESNRELRNLIQQVRDFLT 1485 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33334444444444444443
No 120
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=33.14 E-value=1.7e+02 Score=28.37 Aligned_cols=30 Identities=33% Similarity=0.536 Sum_probs=14.6
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027389 42 AAENDLESGIDWLLKQLQQVNIQMQDWVSS 71 (224)
Q Consensus 42 ~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~ 71 (224)
..+..++.++...++.|+.+-||.--++.+
T Consensus 38 sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss 67 (575)
T KOG2150|consen 38 SQKEKLESDLKKEIKKLQRLRDQIKTWQSS 67 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344445555555555555555555444433
No 121
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=32.59 E-value=87 Score=17.81 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027389 204 IILALVASVCTFLIFIYW 221 (224)
Q Consensus 204 ~Il~~vi~~~i~~~~~~~ 221 (224)
.|.|++.+++++..+.|.
T Consensus 5 vi~G~ilv~lLlgYLvyA 22 (29)
T PRK14748 5 VITGVLLVFLLLGYLVYA 22 (29)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666655555555553
No 122
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=32.35 E-value=1.2e+02 Score=18.58 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=14.1
Q ss_pred HHHhhhhhhhHHHHHHHHHHH
Q 027389 194 SIKRKKSMDTIILALVASVCT 214 (224)
Q Consensus 194 ~I~rR~~rd~~Il~~vi~~~i 214 (224)
-|+||..-+.+.+|++.+...
T Consensus 5 dm~RR~lmN~ll~Gava~~a~ 25 (39)
T PF08802_consen 5 DMSRRQLMNLLLGGAVAVPAG 25 (39)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhhHHHHHH
Confidence 478999999877765544333
No 123
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=32.34 E-value=53 Score=25.43 Aligned_cols=20 Identities=20% Similarity=0.565 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 027389 202 DTIILALVASVCTFLIFIYW 221 (224)
Q Consensus 202 d~~Il~~vi~~~i~~~~~~~ 221 (224)
|++.+....+++++|-++||
T Consensus 218 DR~~~~~F~i~f~~~~i~yw 237 (237)
T PF02932_consen 218 DRLFRILFPIAFILFNIVYW 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhC
Confidence 67766656556666667776
No 124
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=32.31 E-value=78 Score=17.41 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027389 205 ILALVASVCTFLIFIYW 221 (224)
Q Consensus 205 Il~~vi~~~i~~~~~~~ 221 (224)
|+++++++.++..++|.
T Consensus 2 ~l~~~v~~~L~~YL~~a 18 (25)
T PF09604_consen 2 ILGGIVAVALFVYLFYA 18 (25)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45555555555555543
No 125
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=31.82 E-value=5.4e+02 Score=25.83 Aligned_cols=61 Identities=10% Similarity=0.239 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 027389 8 DALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVS 70 (224)
Q Consensus 8 ~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~ 70 (224)
+++-+.+..|..+.+..+..+..+...... -.+.-..+...++...+.=..+..+++....
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~--l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKS--LRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666777777766666665443211 0111233444555555555555555554443
No 126
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=31.57 E-value=1.1e+02 Score=19.37 Aligned_cols=20 Identities=20% Similarity=0.374 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 027389 201 MDTIILALVASVCTFLIFIY 220 (224)
Q Consensus 201 rd~~Il~~vi~~~i~~~~~~ 220 (224)
++-++=.+.|.+|++++.+.
T Consensus 29 qelfvnfclilicllli~ii 48 (52)
T PF04272_consen 29 QELFVNFCLILICLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444466666666665443
No 127
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=30.79 E-value=90 Score=16.86 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027389 7 WDALRKQARKLEAQLDE 23 (224)
Q Consensus 7 w~~lr~~ar~lE~~i~~ 23 (224)
.+.+|...+-||++|+.
T Consensus 3 ~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888888888853
No 128
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=30.74 E-value=67 Score=22.94 Aligned_cols=16 Identities=13% Similarity=0.411 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 027389 205 ILALVASVCTFLIFIY 220 (224)
Q Consensus 205 Il~~vi~~~i~~~~~~ 220 (224)
++|.+++++++.+++|
T Consensus 15 vlGMg~VfvFL~lLI~ 30 (82)
T PRK02919 15 FLGMGFVLAFLFLLIF 30 (82)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4454443333333443
No 129
>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=30.45 E-value=3.1e+02 Score=22.53 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=52.1
Q ss_pred HHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhh---hhhhHHHHHH
Q 027389 138 KEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKK---SMDTIILALV 209 (224)
Q Consensus 138 ~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~---~rd~~Il~~v 209 (224)
.++-.+.++.--+..+-=.-.+..+-|.+|+.+++..-.||.+.+-.+| -+++.....|. +|+.-|++..
T Consensus 30 ~qnl~~~~~ev~lStmaflf~emI~~l~~q~s~~~dfE~kL~~~Gy~vG--ikLlEL~nfr~rnpkre~rIl~iL 102 (208)
T COG5128 30 EQNLKIMKREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVG--IKLLELCNFRRRNPKREVRILTIL 102 (208)
T ss_pred HHhHHHHhccCchHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhHHHH--HHHHHHHHHhhhCccchhhHHHHH
Confidence 3333455555555555555677888999999999999999999998876 47888888887 6677787744
No 130
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=30.44 E-value=1e+02 Score=17.76 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 027389 203 TIILALVASVCTFLIFIYWV 222 (224)
Q Consensus 203 ~~Il~~vi~~~i~~~~~~~~ 222 (224)
.||+|...+|.+-++--.|+
T Consensus 5 aWilG~~lA~~~~v~~a~w~ 24 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAMWL 24 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47888777665555544444
No 131
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=30.28 E-value=78 Score=20.02 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 027389 206 LALVASVCTFLIFIYWVTK 224 (224)
Q Consensus 206 l~~vi~~~i~~~~~~~~~k 224 (224)
+.++++.|++++++-.++|
T Consensus 30 i~aviGAiill~i~~~i~r 48 (48)
T PF04226_consen 30 IVAVIGAIILLFIYRLIRR 48 (48)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4557777777777766553
No 132
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=30.08 E-value=83 Score=25.28 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 027389 148 GQMDSVISQAQATLGALVFQRSTFGG 173 (224)
Q Consensus 148 ~~ld~~l~~g~~~l~~L~~Qr~~L~~ 173 (224)
..+-++.+.++.+++++..|-|.+++
T Consensus 62 drlr~va~rvQ~vlgd~At~gERl~a 87 (156)
T PF08372_consen 62 DRLRSVAGRVQNVLGDVATQGERLQA 87 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777777777776654
No 133
>PRK14749 hypothetical protein; Provisional
Probab=29.55 E-value=1.1e+02 Score=17.54 Aligned_cols=20 Identities=5% Similarity=0.293 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 027389 203 TIILALVASVCTFLIFIYWV 222 (224)
Q Consensus 203 ~~Il~~vi~~~i~~~~~~~~ 222 (224)
.||+|..++|.+-++-..|+
T Consensus 5 aWiLG~~lAc~f~ilna~w~ 24 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLVWL 24 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47888777655555433343
No 134
>COG3462 Predicted membrane protein [Function unknown]
Probab=29.20 E-value=67 Score=24.32 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027389 205 ILALVASVCTFLIFIYWV 222 (224)
Q Consensus 205 Il~~vi~~~i~~~~~~~~ 222 (224)
|+++|+.+.++++++|+.
T Consensus 55 I~~~vvli~lvvfm~~~~ 72 (117)
T COG3462 55 IFWAVVLIFLVVFMFYIL 72 (117)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555445555555543
No 135
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=29.15 E-value=2e+02 Score=21.44 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=16.5
Q ss_pred HhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhh
Q 027389 166 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRK 198 (224)
Q Consensus 166 ~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR 198 (224)
.|.+.++.-+-+....+.+|-.+..+|..|+.|
T Consensus 64 ~QGEqIkel~~e~k~qgktL~~I~~~L~~inkR 96 (102)
T PF01519_consen 64 KQGEQIKELQVEQKAQGKTLQLILKTLQSINKR 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555555555554
No 136
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=29.13 E-value=81 Score=20.50 Aligned_cols=16 Identities=6% Similarity=-0.147 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 027389 207 ALVASVCTFLIFIYWV 222 (224)
Q Consensus 207 ~~vi~~~i~~~~~~~~ 222 (224)
+.+|.+++.|+.+-.|
T Consensus 12 ~~~I~~lIgfity~mf 27 (53)
T PF13131_consen 12 TIFIFFLIGFITYKMF 27 (53)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4444444444333333
No 137
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=29.09 E-value=4.5e+02 Score=24.01 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027389 7 WDALRKQARKLEAQLDEQMHSYR 29 (224)
Q Consensus 7 w~~lr~~ar~lE~~i~~kl~~~s 29 (224)
..++..+.....++.....+.+.
T Consensus 217 l~~l~~~l~~~~~~~~~~~~~~~ 239 (444)
T TIGR03017 217 LNELSAQLVAAQAQVMDASSKEG 239 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555565556665555555554
No 138
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=29.08 E-value=74 Score=22.84 Aligned_cols=6 Identities=0% Similarity=-0.042 Sum_probs=2.3
Q ss_pred HHHHHH
Q 027389 207 ALVASV 212 (224)
Q Consensus 207 ~~vi~~ 212 (224)
|.+++|
T Consensus 18 GM~~VF 23 (85)
T PRK03814 18 GMGVVF 23 (85)
T ss_pred HHHHHH
Confidence 433333
No 139
>PHA02849 putative transmembrane protein; Provisional
Probab=29.02 E-value=66 Score=22.82 Aligned_cols=14 Identities=21% Similarity=0.410 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 027389 204 IILALVASVCTFLI 217 (224)
Q Consensus 204 ~Il~~vi~~~i~~~ 217 (224)
+|+..|+.+|++++
T Consensus 19 vi~v~v~vI~i~~f 32 (82)
T PHA02849 19 VILVFVLVISFLAF 32 (82)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 140
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.57 E-value=85 Score=21.82 Aligned_cols=18 Identities=28% Similarity=0.347 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027389 205 ILALVASVCTFLIFIYWV 222 (224)
Q Consensus 205 Il~~vi~~~i~~~~~~~~ 222 (224)
|+++|+++++.++.-||+
T Consensus 7 il~ivl~ll~G~~~G~fi 24 (71)
T COG3763 7 ILLIVLALLAGLIGGFFI 24 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555444444444544
No 141
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.51 E-value=4.1e+02 Score=23.31 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027389 48 ESGIDWLLKQLQQVNIQMQDWVSSGGS--EMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLED 114 (224)
Q Consensus 48 ~~eI~~~L~~~~~~~~~m~~~v~~~~~--~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~~~~R~eLl~~ 114 (224)
..+++.....++.-|+.|+..+.+... ...+..+..-+..+..|+.+..-++.++ .+|.++|..
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I---~~r~~~l~~ 105 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI---VERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 334444444444444444444433210 0111224444445555555554444444 458888864
No 142
>COG1476 Predicted transcriptional regulators [Transcription]
Probab=28.20 E-value=76 Score=21.89 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=28.9
Q ss_pred HhhccCCcHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 027389 180 NVSSRLPSVNQILSSIKRKKSMDTIILALVASVC 213 (224)
Q Consensus 180 ~~~~~l~~s~~ll~~I~rR~~rd~~Il~~vi~~~ 213 (224)
+++..+|.+..++..|++=+.--.+.++.-|+.+
T Consensus 19 elA~~vgVsRQTi~~iEkgky~Psl~La~kia~~ 52 (68)
T COG1476 19 ELAKLVGVSRQTIIAIEKGKYNPSLELALKIARV 52 (68)
T ss_pred HHHHHcCcCHHHHHHHHcCCCCchHHHHHHHHHH
Confidence 5778999999999999999887889998777443
No 143
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=28.10 E-value=6.9e+02 Score=25.85 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027389 45 NDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLED 114 (224)
Q Consensus 45 ~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~~~~R~eLl~~ 114 (224)
...+.+.+.++....+.=+||+..- .|--.|...++|....|..++++.+|.+|++.
T Consensus 375 ~nve~elqsL~~l~aerqeQidelK-------------n~if~~e~~~~dhe~~kneL~~a~ekld~mgt 431 (1265)
T KOG0976|consen 375 ENVEEELQSLLELQAERQEQIDELK-------------NHIFRLEQGKKDHEAAKNELQEALEKLDLMGT 431 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HhhhhhhhccchhHHHHHHHHHHHHHHHHHhH
Confidence 3344555555555555556666432 22224555677778888888888899999875
No 144
>PRK11281 hypothetical protein; Provisional
Probab=28.08 E-value=7.6e+02 Score=26.31 Aligned_cols=51 Identities=8% Similarity=0.051 Sum_probs=24.8
Q ss_pred HHHHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhcc
Q 027389 134 QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSR 184 (224)
Q Consensus 134 ~~ll~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~ 184 (224)
+.+.+....|+.....+.+.-.+..+........+..+..++.|+.++.+.
T Consensus 128 q~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~ 178 (1113)
T PRK11281 128 SRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNL 178 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555544444444444444444555555555555543
No 145
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=27.95 E-value=3.3e+02 Score=22.14 Aligned_cols=56 Identities=20% Similarity=0.353 Sum_probs=37.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 45 NDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKA 104 (224)
Q Consensus 45 ~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~ 104 (224)
.-++.+.+...+++.++-+.++..+.+.. .+.|=+||..+.+....++++...+..
T Consensus 88 ~lLe~~~~~l~~ri~eLe~~l~~kad~vv----sYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 88 EQLEAQLNTITRRLDELERQLQQKADDVV----SYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666566665555542 256777999999999888888777755
No 146
>PF15056 NRN1: Neuritin protein family
Probab=27.58 E-value=31 Score=24.99 Aligned_cols=14 Identities=36% Similarity=1.016 Sum_probs=12.0
Q ss_pred chHHHHHHHHHHHH
Q 027389 5 SSWDALRKQARKLE 18 (224)
Q Consensus 5 ~~w~~lr~~ar~lE 18 (224)
.-||.||++.|++.
T Consensus 59 ~iWEsLrqESrk~~ 72 (89)
T PF15056_consen 59 AIWESLRQESRKMQ 72 (89)
T ss_pred HHHHHHHHHHHcCC
Confidence 57999999999864
No 147
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=27.01 E-value=82 Score=24.80 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 027389 202 DTIILALVASVCTFLIFIY 220 (224)
Q Consensus 202 d~~Il~~vi~~~i~~~~~~ 220 (224)
-+.|+|++++++.+-++++
T Consensus 74 wk~v~~~~~~~i~~s~~l~ 92 (142)
T PF02936_consen 74 WKKVFGGVFIFIGFSVLLF 92 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4567766665555444433
No 148
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=27.00 E-value=9.5e+02 Score=27.09 Aligned_cols=194 Identities=13% Similarity=0.158 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC------------chhHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027389 5 SSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKV------------DAAENDLESGIDWLLKQLQQVNIQMQDWVSSG 72 (224)
Q Consensus 5 ~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~------------~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~ 72 (224)
+..+.++.+...|+.-|+.+....+++-...++... .+-+.+...+....+.++.+-|.....++...
T Consensus 238 ~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~ 317 (1822)
T KOG4674|consen 238 EKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDA 317 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred C------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hcccccccccccccCCCCCCHH
Q 027389 73 G------SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASL-------------LEDFREFDRTRLDLEDGVGSPE 133 (224)
Q Consensus 73 ~------~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~~~~R~eL-------------l~~~~~~~~~~~d~~~~~~~~~ 133 (224)
. .......-+-+......+..++.++...+..+.+.... +++.......-.+..+-..-..
T Consensus 318 ~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~q 397 (1822)
T KOG4674|consen 318 SERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQ 397 (1822)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhhhHHHHHHhhcccchhHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhh
Q 027389 134 QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRK 198 (224)
Q Consensus 134 ~~ll~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR 198 (224)
+.+....--+++-...++.+....-+.-.-|..||.-+.++...+..+...+..++.=+..++..
T Consensus 398 qqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~ 462 (1822)
T KOG4674|consen 398 QQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKE 462 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 149
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=26.68 E-value=3.2e+02 Score=21.60 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027389 84 HQEILQDLTQEFYRLRSSLK 103 (224)
Q Consensus 84 ~r~~L~~~~~ef~rlk~~~~ 103 (224)
+++.|.+|+.|+.-+..++.
T Consensus 44 q~~~l~~fk~elE~~~~~w~ 63 (144)
T PF11657_consen 44 QQEQLDQFKEELEEIASRWG 63 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555553
No 150
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=26.61 E-value=90 Score=19.37 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 027389 205 ILALVASVCTFLIFIY 220 (224)
Q Consensus 205 Il~~vi~~~i~~~~~~ 220 (224)
|+.+++++.++.+++|
T Consensus 15 ~lVglv~i~iva~~iY 30 (43)
T PF08114_consen 15 CLVGLVGIGIVALFIY 30 (43)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 151
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=26.16 E-value=2.9e+02 Score=21.30 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=30.7
Q ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHH
Q 027389 141 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSS 194 (224)
Q Consensus 141 ~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~ 194 (224)
.+|++-...+|+..++..+|.+++..=+..+..++..+..+-..+.....=|..
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666677666666666666655555555555555554444444433333
No 152
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=26.09 E-value=84 Score=24.56 Aligned_cols=18 Identities=11% Similarity=-0.071 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 027389 202 DTIILALVASVCTFLIFI 219 (224)
Q Consensus 202 d~~Il~~vi~~~i~~~~~ 219 (224)
-+.|+++|++++.+.+++
T Consensus 74 wk~v~~~~~~~i~~s~~~ 91 (136)
T cd00922 74 WKTVFGGVLAFIGITGVI 91 (136)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356776666555444433
No 153
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=25.58 E-value=1e+02 Score=20.30 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027389 204 IILALVASVCTFLIFIY 220 (224)
Q Consensus 204 ~Il~~vi~~~i~~~~~~ 220 (224)
+|++|++++.+++..++
T Consensus 33 ~Ii~gii~~~~fV~~Lv 49 (56)
T PF11174_consen 33 FIIVGIILAALFVAGLV 49 (56)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666665555444333
No 154
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.48 E-value=1.9e+02 Score=27.42 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027389 79 HTLTRHQEILQDLTQEFYRLRSSLKAKQEHASL 111 (224)
Q Consensus 79 ~~l~r~r~~L~~~~~ef~rlk~~~~~~~~R~eL 111 (224)
..++..|..+..+..+-++++.+.+.-+.|+.-
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~ 98 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQS 98 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345555666666666666666555544444433
No 155
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=25.45 E-value=1.9e+02 Score=19.39 Aligned_cols=8 Identities=25% Similarity=0.534 Sum_probs=3.2
Q ss_pred HHHHHHhh
Q 027389 191 ILSSIKRK 198 (224)
Q Consensus 191 ll~~I~rR 198 (224)
.|..|.+|
T Consensus 14 FL~RvGr~ 21 (60)
T PF06072_consen 14 FLRRVGRQ 21 (60)
T ss_pred HHHHHhHH
Confidence 34444433
No 156
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=25.28 E-value=3.5e+02 Score=21.55 Aligned_cols=96 Identities=21% Similarity=0.166 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Q 027389 6 SWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQ 85 (224)
Q Consensus 6 ~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r 85 (224)
--+.+|-....+..++..--..+.+...-+.+ -.-.++.++.-+...+.+.+.+=+..+..+-.... ...+.+++++
T Consensus 7 ~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~-L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~--~~v~~L~h~k 83 (177)
T PF13870_consen 7 EISKLRLKNITLKHQLAKLEEQLRQKEELGEG-LHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIG--KTVQILTHVK 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 34566666666666666555555554432111 12356777888887777777766666655433322 2237899999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027389 86 EILQDLTQEFYRLRSSLKA 104 (224)
Q Consensus 86 ~~L~~~~~ef~rlk~~~~~ 104 (224)
+.+.....++..++..+..
T Consensus 84 eKl~~~~~~~~~l~~~l~~ 102 (177)
T PF13870_consen 84 EKLHFLSEELERLKQELKD 102 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888755
No 157
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.12 E-value=2.9e+02 Score=20.42 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027389 50 GIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLL 112 (224)
Q Consensus 50 eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~~~~R~eLl 112 (224)
.++..++....=+..++..+...|+. ..+...+-.+.+.+.+++.+...++.-..-.+||
T Consensus 39 ~l~~~~~~~~~Rl~~lE~~l~~LPt~---~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 39 KLEERLDEHDRRLQALETKLEHLPTR---DDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666677777777764 3466666778888888888877776644334443
No 158
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=25.11 E-value=79 Score=26.85 Aligned_cols=8 Identities=13% Similarity=0.434 Sum_probs=4.0
Q ss_pred HHHHHhhh
Q 027389 26 HSYRKLVS 33 (224)
Q Consensus 26 ~~~s~~~~ 33 (224)
.-|...|.
T Consensus 20 qvy~~~C~ 27 (219)
T PF02167_consen 20 QVYMEVCA 27 (219)
T ss_dssp HHHHHTGG
T ss_pred HHHHHHHh
Confidence 34555554
No 159
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=25.08 E-value=1.4e+02 Score=20.75 Aligned_cols=27 Identities=11% Similarity=0.320 Sum_probs=14.1
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 027389 194 SIKRKKSMDTIILALVASVCTFLIFIY 220 (224)
Q Consensus 194 ~I~rR~~rd~~Il~~vi~~~i~~~~~~ 220 (224)
-+.+|+++=.+.++.-+.|+++..+.|
T Consensus 12 d~~~R~r~Y~i~M~~Ri~~fvlA~~~~ 38 (73)
T PF11298_consen 12 DQRRRRRRYLIMMGIRIPCFVLAAVVY 38 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554555566665555444444
No 160
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=25.08 E-value=64 Score=23.27 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027389 81 LTRHQEILQDLTQEFYRL 98 (224)
Q Consensus 81 l~r~r~~L~~~~~ef~rl 98 (224)
+.+..+.+.+++.++..+
T Consensus 7 Id~lEekl~~cr~~le~v 24 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAV 24 (85)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 444445555555444444
No 161
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=24.97 E-value=65 Score=27.28 Aligned_cols=11 Identities=36% Similarity=0.778 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 027389 207 ALVASVCTFLI 217 (224)
Q Consensus 207 ~~vi~~~i~~~ 217 (224)
|+.+.+|.++|
T Consensus 138 AVLfLICT~Lf 148 (227)
T PF05399_consen 138 AVLFLICTLLF 148 (227)
T ss_pred HHHHHHHHHHH
Confidence 33333444443
No 162
>PF05644 Miff: Mitochondrial and peroxisomal fission factor Mff; InterPro: IPR008518 This family consists of several eukaryotic proteins of unknown function.
Probab=24.80 E-value=88 Score=27.05 Aligned_cols=47 Identities=13% Similarity=0.260 Sum_probs=29.3
Q ss_pred HhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 027389 166 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVT 223 (224)
Q Consensus 166 ~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il~~vi~~~i~~~~~~~~~ 223 (224)
.=|..+.+.++||..+-. --..|..|.++++++.+++|++= .|+||+
T Consensus 199 ~lrrQi~klnrRl~~lE~----------~n~~r~~re~~~y~~~va~~l~n-~w~w~~ 245 (246)
T PF05644_consen 199 SLRRQIIKLNRRLQALEE----------ENKERQQREMILYSITVAFWLLN-SWLWLR 245 (246)
T ss_pred HHHHHHHHHhHHHHHHHH----------HhHHHHhHHHHHHHHHHHHHHHH-HHHhhc
Confidence 334556667777765432 23467778888887777666554 566664
No 163
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=24.62 E-value=1.7e+02 Score=17.67 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 027389 201 MDTIILALVASVCTFLIFIYW 221 (224)
Q Consensus 201 rd~~Il~~vi~~~i~~~~~~~ 221 (224)
|-+++++.++.+.++.++-|-
T Consensus 14 r~Wi~F~l~mi~vFi~li~yt 34 (38)
T PF09125_consen 14 RGWIAFALAMILVFIALIGYT 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 344455655544444444443
No 164
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=24.44 E-value=2.3e+02 Score=19.17 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 027389 204 IILALVASVCTFLI 217 (224)
Q Consensus 204 ~Il~~vi~~~i~~~ 217 (224)
+|.|++|++.+.++
T Consensus 56 ~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 56 TIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777775554443
No 165
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=24.29 E-value=24 Score=33.56 Aligned_cols=26 Identities=8% Similarity=0.242 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027389 6 SWDALRKQARKLEAQLDEQMHSYRKL 31 (224)
Q Consensus 6 ~w~~lr~~ar~lE~~i~~kl~~~s~~ 31 (224)
..+.+.+-..+|-.=+.+-|..+.+.
T Consensus 49 ~l~~Y~~tl~~Ll~Pi~~~l~~~~~~ 74 (490)
T PF00523_consen 49 ELDEYNNTLTELLTPIQDNLNRINRA 74 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhcc
Confidence 56777888888888888888888774
No 166
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=24.05 E-value=5.3e+02 Score=23.15 Aligned_cols=91 Identities=23% Similarity=0.258 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHh-------c---CCchhh
Q 027389 8 DALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVS-------S---GGSEMV 77 (224)
Q Consensus 8 ~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~-------~---~~~~~~ 77 (224)
+.|.++..+|+.+...+=..+.++..... .-+..++.+=+.++..+..-+++|..+-+ . .||+..
T Consensus 138 ~kL~k~i~~Le~e~~~~q~~le~Lr~EKV-----dlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~ 212 (310)
T PF09755_consen 138 NKLQKKIERLEKEKSAKQEELERLRREKV-----DLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPR 212 (310)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcc
Confidence 34455555555544444444444433211 23455666777777777766666654322 1 122111
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 78 --------SHTLTRHQEILQDLTQEFYRLRSSLK 103 (224)
Q Consensus 78 --------~~~l~r~r~~L~~~~~ef~rlk~~~~ 103 (224)
..+.++.-.-+..++.|+.|++..+.
T Consensus 213 d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~ 246 (310)
T PF09755_consen 213 DTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLA 246 (310)
T ss_pred hHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 01234444446666777777766553
No 167
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=23.94 E-value=4.5e+02 Score=22.31 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=28.5
Q ss_pred HHHHHhhHHhhhHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHhHHHHhhcc
Q 027389 135 ALLKEHASINRSTGQMDSVISQAQATL----GALVFQRSTFGGINSKLSNVSSR 184 (224)
Q Consensus 135 ~ll~e~~~L~~S~~~ld~~l~~g~~~l----~~L~~Qr~~L~~~~~rl~~~~~~ 184 (224)
.++.-...|..+...+.++|..=..++ ..+...-..|+.+..||....+.
T Consensus 171 em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~ 224 (251)
T PF09753_consen 171 EMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSK 224 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555555555554443333 33444456777788888877654
No 168
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=23.58 E-value=1.1e+02 Score=21.96 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 027389 205 ILALVASVCTFLIFIY 220 (224)
Q Consensus 205 Il~~vi~~~i~~~~~~ 220 (224)
++|..++++++++++|
T Consensus 15 vlGmg~VflfL~iLi~ 30 (84)
T COG3630 15 VLGMGFVFLFLSILIY 30 (84)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455444444444444
No 169
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=23.57 E-value=99 Score=22.81 Aligned_cols=15 Identities=7% Similarity=0.321 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHH
Q 027389 207 ALVASVCTFLIFIYW 221 (224)
Q Consensus 207 ~~vi~~~i~~~~~~~ 221 (224)
||++++++++++.|.
T Consensus 24 Ggll~~~il~~iLYi 38 (96)
T PF13571_consen 24 GGLLGLFILFVILYI 38 (96)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666664
No 170
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=23.37 E-value=90 Score=22.96 Aligned_cols=20 Identities=15% Similarity=0.009 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 027389 203 TIILALVASVCTFLIFIYWV 222 (224)
Q Consensus 203 ~~Il~~vi~~~i~~~~~~~~ 222 (224)
..|-+++|+.+++.+.||-|
T Consensus 59 N~is~a~i~alViaIY~YTf 78 (108)
T KOG4782|consen 59 NHISFAGIGALVIAIYGYTF 78 (108)
T ss_pred hhhhhHHHHHHHHHhhhhee
Confidence 35557777777777777654
No 171
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=23.26 E-value=1.9e+02 Score=24.34 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 48 ESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKA 104 (224)
Q Consensus 48 ~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~ 104 (224)
-.+|+..++.+..-+.+|+.-|..... -....+|.-...||+||+++-..+..
T Consensus 7 ~~~Ve~kid~f~~F~k~MD~svk~l~~----~~~e~~kk~~~~~kkEyqkiG~af~~ 59 (207)
T cd07669 7 LQDVEERVDVFKAFSKKMDDSVLQLSN----VASELVRKHLGGFRKEFQKLGNAFQA 59 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHcccccHHHHHHHHHHHH
Confidence 457888888899999999987765421 11345567778889999998776644
No 172
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=23.26 E-value=82 Score=28.04 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 027389 207 ALVASVCTFLIFIYWV 222 (224)
Q Consensus 207 ~~vi~~~i~~~~~~~~ 222 (224)
+.||+++|.++++++|
T Consensus 264 aIliIVLIMvIIYLIL 279 (299)
T PF02009_consen 264 AILIIVLIMVIIYLIL 279 (299)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 173
>KOG3443 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.10 E-value=4.2e+02 Score=21.66 Aligned_cols=60 Identities=12% Similarity=0.025 Sum_probs=48.9
Q ss_pred HHHHHHHHH--HHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHHHHH
Q 027389 150 MDSVISQAQ--ATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALV 209 (224)
Q Consensus 150 ld~~l~~g~--~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il~~v 209 (224)
+++++.+-. .+++-++.|++.|++..+.-.-+.|-...+.+.+....+|..++.+.+.-+
T Consensus 21 i~sLls~vn~~tv~~iI~aqkQml~rfektnemllNc~~l~~~rl~~as~r~l~H~~tL~em 82 (184)
T KOG3443|consen 21 ILSLLSMVNKRTVLEIIHAQKQMLERFEKTNEMLLNCNKLSVKRLDLASERFLQHLITLTEM 82 (184)
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444554443 378888999999999999988899999999999999999999998766433
No 174
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=23.10 E-value=5.8e+02 Score=23.23 Aligned_cols=62 Identities=10% Similarity=0.142 Sum_probs=46.3
Q ss_pred HHHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhh
Q 027389 135 ALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKK 199 (224)
Q Consensus 135 ~ll~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~ 199 (224)
.|-.=|....+....+..+-.+=..+-..|.....+|..+..+ +..++..++.-+..|+.|.
T Consensus 323 tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri 384 (388)
T PF04912_consen 323 TLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERI 384 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3334455566777778888888888888888999999998888 5556667777777777775
No 175
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=22.91 E-value=2e+02 Score=24.31 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 48 ESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKA 104 (224)
Q Consensus 48 ~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~ 104 (224)
-.+|+..++.+..-+.+|+.-|...... .-..+|.-...||+||+|+-..+..
T Consensus 7 ~~~VE~kid~f~~F~k~MD~svk~l~~~----~~e~~kk~~~~~KkEyqkiG~af~~ 59 (210)
T cd07668 7 LVEIEQKCEAVGRFTKAMDDGVKELLTV----GQEHWKRCTGPLPKEYQKIGKALQS 59 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcccccHHHHHHHHHHHH
Confidence 3578888888999999999877654311 1334566778889999998776644
No 176
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=22.64 E-value=96 Score=24.38 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 027389 201 MDTIILALVASVCTFLIFIYWV 222 (224)
Q Consensus 201 rd~~Il~~vi~~~i~~~~~~~~ 222 (224)
-+.+++|.+|++|+-++.++|+
T Consensus 89 ~~dlL~G~liGff~g~~~~~~L 110 (140)
T PF13373_consen 89 NDDLLWGLLIGFFFGLFSLFWL 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 3567888888888877764443
No 177
>PF11146 DUF2905: Protein of unknown function (DUF2905); InterPro: IPR021320 This is a family of bacterial proteins conserved of unknown function.
Probab=22.07 E-value=1.3e+02 Score=20.42 Aligned_cols=22 Identities=9% Similarity=0.326 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhC
Q 027389 203 TIILALVASVCTFLIFIYWVTK 224 (224)
Q Consensus 203 ~~Il~~vi~~~i~~~~~~~~~k 224 (224)
||++...++++++-.+++|..|
T Consensus 3 k~li~~gl~l~v~G~l~~~~~k 24 (64)
T PF11146_consen 3 KWLIVIGLILIVLGLLLPWLGK 24 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4555444445666666666544
No 178
>PF08135 EPV_E5: Major transforming protein E5 family; InterPro: IPR012555 This family consists of the major transforming proteins (E5) of the bovine papilloma virus (BPV). The equine sarcoid is one of the most common dermatological lesion in equids. It is a benign, locally invasive dermal fibroblastic lesion and studies have shown an association of the lesions with BPV. E5 is a short hydrophobic membrane protein localising to the Golgi apparatus and other intracellular membranes. It binds to and constitutively activates the platelet-derived growth factor-beta in transformed cells. This stimulation activates a receptor signalling cascade which results in an intracellular growth stimulatory signal [].
Probab=21.99 E-value=1e+02 Score=19.14 Aligned_cols=8 Identities=38% Similarity=1.489 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 027389 214 TFLIFIYW 221 (224)
Q Consensus 214 i~~~~~~~ 221 (224)
++|++.||
T Consensus 25 L~fFLV~W 32 (44)
T PF08135_consen 25 LFFFLVYW 32 (44)
T ss_pred HHHHHHHH
Confidence 33334443
No 179
>PHA03010 hypothetical protein; Provisional
Probab=21.95 E-value=1.2e+02 Score=28.10 Aligned_cols=27 Identities=33% Similarity=0.613 Sum_probs=15.7
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027389 195 IKRKKSMDTIILALVASVCTFLIFIYWV 222 (224)
Q Consensus 195 I~rR~~rd~~Il~~vi~~~i~~~~~~~~ 222 (224)
|+..-.|-.-||+.|| .|+++++.+.|
T Consensus 499 ie~~~~q~n~il~ivi-l~iilifmfvf 525 (546)
T PHA03010 499 IEKHGLQLNAILAIVI-LCIILIFMFVF 525 (546)
T ss_pred HHHhcchhhhHHHHHH-HHHHHHHHHHH
Confidence 5555556667888777 45444444333
No 180
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=21.84 E-value=58 Score=30.04 Aligned_cols=10 Identities=10% Similarity=0.079 Sum_probs=4.8
Q ss_pred CcHHHHHHHH
Q 027389 186 PSVNQILSSI 195 (224)
Q Consensus 186 ~~s~~ll~~I 195 (224)
++|...|-.|
T Consensus 363 ~LstgaIaGI 372 (397)
T PF03302_consen 363 GLSTGAIAGI 372 (397)
T ss_pred cccccceeee
Confidence 4455444444
No 181
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=21.73 E-value=1.9e+02 Score=17.29 Aligned_cols=13 Identities=15% Similarity=0.043 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHHH
Q 027389 203 TIILALVASVCTF 215 (224)
Q Consensus 203 ~~Il~~vi~~~i~ 215 (224)
|+.++.|+++.+.
T Consensus 5 K~~Vy~vV~ffv~ 17 (36)
T PF02532_consen 5 KIFVYTVVIFFVS 17 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EEeehhhHHHHHH
Confidence 3444444433333
No 182
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.20 E-value=4.6e+02 Score=21.40 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=5.1
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 027389 45 NDLESGIDWLLKQLQQVNIQ 64 (224)
Q Consensus 45 ~~l~~eI~~~L~~~~~~~~~ 64 (224)
.++..|+...+..+...+++
T Consensus 101 ~QVqqeL~~tf~rL~~~Vd~ 120 (171)
T PF04799_consen 101 HQVQQELSSTFARLCQQVDQ 120 (171)
T ss_dssp ---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555554444444443
No 183
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=21.15 E-value=5e+02 Score=25.08 Aligned_cols=65 Identities=14% Similarity=0.033 Sum_probs=46.8
Q ss_pred HHHHHhhHHhhhHHHHHHHHHHHH---------HHHHHHHHhHHHHHHHHhHHHHhh-----ccCCcHHHHHHHHHhhh
Q 027389 135 ALLKEHASINRSTGQMDSVISQAQ---------ATLGALVFQRSTFGGINSKLSNVS-----SRLPSVNQILSSIKRKK 199 (224)
Q Consensus 135 ~ll~e~~~L~~S~~~ld~~l~~g~---------~~l~~L~~Qr~~L~~~~~rl~~~~-----~~l~~s~~ll~~I~rR~ 199 (224)
+++.-..+.-.-++.+|+++.+|. .+++.+..|++.|--..+|+.++- +.+|.+..-|..-.-+.
T Consensus 250 q~lg~~~stvtl~q~~deL~~ig~n~~~~P~~~~~rdei~aq~eqLi~~s~kv~EafRt~~~sqigns~qql~t~~~~i 328 (673)
T COG4192 250 QVLGQTASTVTLHQLSDELDAIGHNDLSHPITVDGRDEIGAQSEQLILYSKKVEEAFRTNALSQIGNSQQQLITCDGQI 328 (673)
T ss_pred HHhcCCchhhHHHHHHHHHHHhcCCcccCCchhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCchHHHHHHHhhHH
Confidence 444455555566788899999884 589999999999999998887753 45676666555544433
No 184
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=21.05 E-value=1.8e+02 Score=21.65 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 027389 201 MDTIILALVASVCTFLIFIYW 221 (224)
Q Consensus 201 rd~~Il~~vi~~~i~~~~~~~ 221 (224)
...++.|.+++.+++.+.+|-
T Consensus 49 ~rN~~Tgl~L~~~v~gIY~YT 69 (100)
T PF09813_consen 49 RRNLLTGLALGAFVVGIYAYT 69 (100)
T ss_pred hhhHHHHHHHHHHHHHHHhhe
Confidence 344566777766666655553
No 185
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=21.01 E-value=1.6e+02 Score=25.09 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 027389 203 TIILALVASVCTFLIF 218 (224)
Q Consensus 203 ~~Il~~vi~~~i~~~~ 218 (224)
++|+++|++++++|++
T Consensus 187 W~i~~~v~~i~~i~vv 202 (226)
T PHA02662 187 WTLLLAVAAVTVLGVV 202 (226)
T ss_pred chhHHHHHHHHHHHHH
Confidence 4466777756666654
No 186
>PLN02943 aminoacyl-tRNA ligase
Probab=20.98 E-value=4e+02 Score=27.68 Aligned_cols=26 Identities=8% Similarity=0.066 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 79 HTLTRHQEILQDLTQEFYRLRSSLKA 104 (224)
Q Consensus 79 ~~l~r~r~~L~~~~~ef~rlk~~~~~ 104 (224)
..+...+++|.++..++..++..+..
T Consensus 924 evv~~e~~kl~~~~~~l~~~~~~l~~ 949 (958)
T PLN02943 924 DVVRGVREKAAEAEEKIKLTKNRLAF 949 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788889999999999888777644
No 187
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.74 E-value=2.4e+02 Score=24.76 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=42.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHH
Q 027389 143 INRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSS 194 (224)
Q Consensus 143 L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~ 194 (224)
|..-...+-++=.+|..+=..|..|+..|.+++.++-..+.++-..|.=+++
T Consensus 220 L~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 220 LDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 5555566666778899999999999999999999999998888777765544
No 188
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=20.65 E-value=1.6e+02 Score=18.17 Aligned_cols=15 Identities=33% Similarity=0.248 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHHHH
Q 027389 202 DTIILALVASVCTFL 216 (224)
Q Consensus 202 d~~Il~~vi~~~i~~ 216 (224)
-.+|++|.+++.++.
T Consensus 18 PvI~L~GF~~Vav~~ 32 (42)
T PF09574_consen 18 PVIILSGFAAVAVAS 32 (42)
T ss_pred hHHHHhhHHHHHHHH
Confidence 456776665444433
No 189
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=20.58 E-value=1e+02 Score=28.23 Aligned_cols=19 Identities=5% Similarity=-0.001 Sum_probs=9.4
Q ss_pred hhhhhhhHHHHHHHHHHHH
Q 027389 197 RKKSMDTIILALVASVCTF 215 (224)
Q Consensus 197 rR~~rd~~Il~~vi~~~i~ 215 (224)
.|-++.+.+++|+++|+++
T Consensus 82 ~r~~~R~~~~~G~~~f~~~ 100 (385)
T PF06898_consen 82 KRLRRRKGFVAGIVLFLAL 100 (385)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556666555533333
No 190
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=20.55 E-value=4.5e+02 Score=21.08 Aligned_cols=102 Identities=14% Similarity=0.232 Sum_probs=54.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccccccccc
Q 027389 44 ENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLR-SSLKAKQEHASLLEDFREFDRTR 122 (224)
Q Consensus 44 ~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk-~~~~~~~~R~eLl~~~~~~~~~~ 122 (224)
...+..+++..-.++..+|+..+.+-. .-.+-|..|.+..++|.+-. ..++.+.+...=+.--.
T Consensus 29 ~~~l~~EL~evk~~v~~~I~evD~Le~---------~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L------ 93 (159)
T PF05384_consen 29 YERLRKELEEVKEEVSEVIEEVDKLEK---------RERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRL------ 93 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHH------
Confidence 344555555555555555555554321 12333556666666665422 22333333222211000
Q ss_pred cccCCCCCCHHHHHHHHhhHHhhhHHHHHHHHHHHHHHHHHH
Q 027389 123 LDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGAL 164 (224)
Q Consensus 123 ~d~~~~~~~~~~~ll~e~~~L~~S~~~ld~~l~~g~~~l~~L 164 (224)
.. ....+.+|-.-++.|++..+.+.+++..|......+
T Consensus 94 -~~---~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi 131 (159)
T PF05384_consen 94 -AM---LREREKQLRERRDELERRLRNLEETIERAENLVSQI 131 (159)
T ss_pred -HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 012346788889999999999999999887655544
No 191
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=20.45 E-value=1.5e+02 Score=20.97 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 027389 204 IILALVASVCTFLI 217 (224)
Q Consensus 204 ~Il~~vi~~~i~~~ 217 (224)
|+++++.++++.+.
T Consensus 53 l~l~ail~lL~a~Y 66 (79)
T PF15168_consen 53 LVLAAILVLLLAFY 66 (79)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555554443333
No 192
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=20.36 E-value=50 Score=25.27 Aligned_cols=9 Identities=11% Similarity=0.228 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 027389 209 VASVCTFLI 217 (224)
Q Consensus 209 vi~~~i~~~ 217 (224)
.|+++|+++
T Consensus 65 fiatliill 73 (150)
T PF06084_consen 65 FIATLIILL 73 (150)
T ss_pred HHHHHHHHH
Confidence 344444333
No 193
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.12 E-value=3.8e+02 Score=22.62 Aligned_cols=53 Identities=9% Similarity=0.150 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 48 ESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKA 104 (224)
Q Consensus 48 ~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~ 104 (224)
-.+|+..++.+..-+.+|+.-|...... .-...+.-...|++||+|+=..+..
T Consensus 7 ~~~VE~kid~f~~F~k~Md~sv~~l~~~----~~e~~kk~~~~~KkEyqkiG~af~~ 59 (207)
T cd07670 7 LQDVESRIDGFKAFTKKMDESVLQLNHT----ANEFARKQVTGFKKEYQKVGQSFKG 59 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhccccHHHHHHHHHHHH
Confidence 4578888888999999999887655311 1233456777889999888776643
No 194
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=20.11 E-value=3.4e+02 Score=19.46 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027389 48 ESGIDWLLKQLQQVNIQMQD 67 (224)
Q Consensus 48 ~~eI~~~L~~~~~~~~~m~~ 67 (224)
...|...|++++.+++.++.
T Consensus 28 ~~~ins~LD~Lns~LD~LE~ 47 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQ 47 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888777764
No 195
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=20.10 E-value=1.4e+02 Score=30.04 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=37.7
Q ss_pred HhhccCCcHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 027389 180 NVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVT 223 (224)
Q Consensus 180 ~~~~~l~~s~~ll~~I~rR~~rd~~Il~~vi~~~i~~~~~~~~~ 223 (224)
+..+.+.+.-.+.-.|.+-..+|..++++++++++++.++|+|+
T Consensus 175 ~~~~~ltG~~~~~~~i~~~~~~d~~~l~~l~~~l~vivL~~~fr 218 (727)
T COG1033 175 GVKLYLTGDPAIRYQILREIQKDMVVLLALAVILMVIVLYYVFR 218 (727)
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66678888889999999999999999988887778888888886
No 196
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=20.09 E-value=3.9e+02 Score=20.11 Aligned_cols=41 Identities=10% Similarity=0.241 Sum_probs=20.1
Q ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Q 027389 140 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSN 180 (224)
Q Consensus 140 ~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~ 180 (224)
+..+++-...+..-++..-...+.|..||..|+++...|..
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~ 51 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQA 51 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555544443
No 197
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=20.06 E-value=1.7e+02 Score=22.72 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=26.2
Q ss_pred HHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 027389 170 TFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVT 223 (224)
Q Consensus 170 ~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il~~vi~~~i~~~~~~~~~ 223 (224)
=||---+||.++-+.++-+ ..|=++|++ ++++|+++..|+|+.
T Consensus 8 DLkaFErRLtEvI~~l~Ps----------t~RWRiiL~-v~svct~v~A~~wL~ 50 (125)
T PF09771_consen 8 DLKAFERRLTEVINSLQPS----------TTRWRIILV-VVSVCTAVGAWHWLM 50 (125)
T ss_pred HHHHHHHHHHHHHHhcCCc----------chhHHHHHH-HHHHHHHHHHHHHhc
Confidence 3555666666665555443 344455665 556788888888863
Done!