Query 027389
Match_columns 224
No_of_seqs 133 out of 503
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 15:15:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_C Vesicle transport throu 99.1 1.4E-10 4.9E-15 82.2 7.9 70 134-203 12-81 (81)
2 2qyw_A Vesicle transport throu 98.9 6.9E-09 2.4E-13 76.7 9.4 87 5-102 15-101 (102)
3 1gl2_C VTI1B, vesicle transpor 98.9 2E-09 6.7E-14 73.2 4.6 62 136-197 4-65 (65)
4 1vcs_A Vesicle transport throu 98.8 2.4E-08 8E-13 73.8 9.1 88 5-104 5-92 (102)
5 3onj_A T-snare VTI1; helix, HA 98.8 1E-07 3.4E-12 69.8 11.5 88 6-105 2-92 (97)
6 1n7s_C SNAP-25A; neuronal snar 98.2 4.6E-06 1.6E-10 58.6 7.8 61 136-196 18-78 (79)
7 1nhl_A Synaptosomal-associated 97.8 2.4E-05 8.2E-10 50.9 4.6 52 144-195 3-54 (54)
8 3b5n_C Protein transport prote 96.3 0.014 4.7E-07 39.7 6.6 57 141-197 12-68 (70)
9 1l4a_C S-SNAP25 fusion protein 95.6 0.0069 2.4E-07 42.6 2.8 55 141-195 27-81 (83)
10 3hd7_A Vesicle-associated memb 95.0 0.18 6.3E-06 35.7 8.7 80 141-221 5-88 (91)
11 4dnd_A Syntaxin-10, SYN10; str 94.4 0.8 2.7E-05 34.6 11.5 96 5-102 27-128 (130)
12 3hd7_B Syntaxin-1A; membrane p 91.3 3 0.0001 30.3 10.4 56 143-198 23-78 (109)
13 2kog_A Vesicle-associated memb 89.3 0.14 4.7E-06 38.3 1.6 75 139-213 31-109 (119)
14 1fio_A SSO1 protein; four heli 88.5 7.6 0.00026 30.4 11.7 102 1-104 1-109 (196)
15 2iub_A CORA, divalent cation t 88.5 12 0.0004 32.5 14.1 51 47-104 189-239 (363)
16 2l34_A TYRO protein tyrosine k 88.0 0.59 2E-05 26.8 3.4 21 204-224 12-32 (33)
17 4ev6_A Magnesium transport pro 82.2 23 0.00078 30.3 18.2 50 48-104 166-215 (339)
18 4b19_A PEPA1; toxin, toxin apo 75.5 0.49 1.7E-05 26.4 -0.3 19 205-223 7-25 (30)
19 2dnx_A Syntaxin-12; snare, HAB 72.0 19 0.00065 26.6 7.8 61 39-102 7-67 (130)
20 2kog_A Vesicle-associated memb 69.9 6.1 0.00021 29.2 4.5 57 146-202 31-90 (119)
21 1gl2_D Syntaxin 8, vesicle tra 69.8 10 0.00035 24.5 5.2 52 142-193 10-61 (65)
22 1n7s_D SNAP-25A; neuronal snar 68.2 15 0.00052 23.7 5.8 53 142-194 11-63 (66)
23 2nps_D Syntaxin-6; vesicle fus 67.5 19 0.00066 24.3 6.5 58 141-198 19-76 (82)
24 2ks1_B Epidermal growth factor 67.1 4.1 0.00014 24.8 2.5 16 207-222 19-35 (44)
25 2c5k_T Syntaxin TLG1, T-snare 66.9 30 0.001 24.3 10.4 84 5-103 6-92 (95)
26 1sfc_D Protein (SNAP-25B), pro 65.3 14 0.00049 25.4 5.5 55 142-196 30-84 (87)
27 1l4a_D S-SNAP25 fusion protein 65.0 13 0.00043 25.8 5.1 55 141-195 30-84 (87)
28 2l2t_A Receptor tyrosine-prote 65.0 4.8 0.00016 24.5 2.5 6 212-217 23-28 (44)
29 1n7s_D SNAP-25A; neuronal snar 63.1 27 0.00093 22.4 7.3 57 47-108 4-60 (66)
30 3b5n_D Protein transport prote 61.2 18 0.00062 23.5 5.1 51 142-192 11-61 (64)
31 2l3l_A Tubulin-specific chaper 60.9 44 0.0015 24.1 8.0 52 44-98 44-103 (111)
32 3na7_A HP0958; flagellar bioge 60.7 68 0.0023 26.2 12.2 52 7-58 55-106 (256)
33 2l35_A DAP12-NKG2C_TM; immunor 53.5 14 0.00048 24.1 3.4 21 204-224 12-32 (63)
34 2lx0_A Membrane fusion protein 51.5 13 0.00045 20.2 2.5 17 205-221 8-24 (32)
35 1vcs_A Vesicle transport throu 50.8 28 0.00097 24.6 5.1 46 50-99 49-94 (102)
36 1sfc_D Protein (SNAP-25B), pro 49.7 59 0.002 22.2 8.1 64 43-111 19-82 (87)
37 2nps_C Vesicle transport throu 48.4 60 0.0021 21.9 6.5 60 133-192 4-63 (81)
38 1use_A VAsp, vasodilator-stimu 48.2 34 0.0012 20.7 4.3 26 85-111 14-39 (45)
39 3b5n_D Protein transport prote 48.0 53 0.0018 21.2 7.6 23 47-69 4-26 (64)
40 3onj_A T-snare VTI1; helix, HA 47.6 51 0.0017 23.0 6.0 48 48-99 43-93 (97)
41 1l4a_D S-SNAP25 fusion protein 40.5 67 0.0023 22.0 5.6 59 45-108 22-80 (87)
42 2l9u_A Receptor tyrosine-prote 40.4 34 0.0012 19.6 3.2 18 204-221 12-30 (40)
43 1gl2_D Syntaxin 8, vesicle tra 38.8 74 0.0025 20.2 5.9 54 50-108 6-59 (65)
44 2knc_A Integrin alpha-IIB; tra 35.0 30 0.001 21.8 2.7 10 204-213 14-23 (54)
45 2l8s_A Integrin alpha-1; trans 33.2 33 0.0011 21.6 2.7 10 204-213 11-20 (54)
46 2k9p_A Pheromone alpha factor 33.0 74 0.0025 21.6 4.7 33 190-222 9-41 (80)
47 2xhe_B Syntaxin1; exocytosis, 32.9 2E+02 0.0069 23.5 14.9 100 5-104 44-163 (279)
48 2w6b_A RHO guanine nucleotide 32.1 96 0.0033 19.5 5.3 31 81-111 12-43 (56)
49 2qyw_A Vesicle transport throu 31.2 60 0.0021 22.9 4.2 22 44-65 17-38 (102)
50 3j1r_A Archaeal adhesion filam 30.3 65 0.0022 17.0 3.0 9 214-222 17-25 (26)
51 2k1a_A Integrin alpha-IIB; sin 30.2 43 0.0015 19.9 2.7 10 204-213 12-21 (42)
52 2klu_A T-cell surface glycopro 29.8 52 0.0018 21.7 3.2 15 204-218 12-26 (70)
53 2pnv_A Small conductance calci 28.1 63 0.0021 19.3 3.2 27 5-31 16-42 (43)
54 2jwa_A Receptor tyrosine-prote 26.8 71 0.0024 19.2 3.2 12 203-214 12-23 (44)
55 3cvf_A Homer-3, homer protein 26.7 1.5E+02 0.0051 20.0 8.3 55 9-72 24-78 (79)
56 1ydi_B Alpha-actinin 4; cell a 25.8 82 0.0028 16.7 3.6 20 6-25 2-21 (26)
57 3ljm_A Coil Ser L9C; de novo d 25.6 85 0.0029 16.8 4.3 17 6-22 2-18 (31)
58 2yiu_B Cytochrome C1, heme pro 25.1 45 0.0015 27.9 2.9 17 207-223 233-249 (263)
59 3a7p_A Autophagy protein 16; c 25.0 2.3E+02 0.0078 21.6 9.1 104 6-114 25-132 (152)
60 1lyp_A CAP18; lipopolysacchari 24.2 93 0.0032 16.8 3.7 23 10-32 2-24 (32)
61 3cx5_D Cytochrome C1, heme pro 23.5 55 0.0019 27.1 3.1 9 25-33 33-41 (248)
62 1fjk_A Cardiac phospholamban; 23.4 1E+02 0.0035 18.6 3.5 17 203-219 31-47 (52)
63 2nps_D Syntaxin-6; vesicle fus 23.0 1.6E+02 0.0055 19.6 5.0 58 50-112 16-73 (82)
64 3tnu_B Keratin, type II cytosk 22.9 2.2E+02 0.0075 20.6 8.6 36 79-114 75-111 (129)
65 1pp9_D Cytochrome C-1, cytochr 22.6 59 0.002 26.8 3.1 10 24-33 29-38 (241)
66 3hd7_A Vesicle-associated memb 22.5 1.9E+02 0.0065 19.7 9.3 34 149-182 6-39 (91)
67 3arc_I Photosystem II reaction 22.1 1.2E+02 0.0041 17.5 3.4 15 203-217 5-19 (38)
68 2k9j_B Integrin beta-3; transm 22.1 96 0.0033 18.3 3.2 6 205-210 12-17 (43)
69 3vkg_A Dynein heavy chain, cyt 22.1 9.1E+02 0.031 27.5 20.1 45 134-178 2052-2096(3245)
70 3ghg_A Fibrinogen alpha chain; 21.6 4.7E+02 0.016 24.1 9.1 70 8-93 113-187 (562)
71 1iij_A ERBB-2 receptor protein 21.5 99 0.0034 17.6 3.0 16 201-216 6-21 (35)
72 3fav_B ESAT-6, 6 kDa early sec 21.5 1.8E+02 0.0062 19.1 8.6 26 47-72 13-38 (94)
73 1zrt_D Cytochrome C1; cytochro 21.3 65 0.0022 26.9 3.1 13 21-33 23-35 (258)
74 2qjy_B Cytochrome C1; cytochro 21.1 60 0.002 27.3 2.9 11 23-33 27-37 (269)
75 3gwk_C SAG1039, putative uncha 21.0 1.9E+02 0.0065 19.1 10.1 58 45-102 21-85 (98)
76 3zbh_A ESXA; unknown function, 20.9 1.9E+02 0.0063 19.0 8.6 20 47-66 24-43 (99)
77 1q90_R Cytochrome B6-F complex 20.7 1.5E+02 0.0051 18.1 4.0 15 195-209 9-23 (49)
78 2zvf_A Alanyl-tRNA synthetase; 20.2 2.7E+02 0.0093 20.6 7.1 55 58-114 12-66 (171)
79 2dnx_A Syntaxin-12; snare, HAB 20.2 2.5E+02 0.0087 20.3 13.8 65 5-69 10-78 (130)
80 3oja_B Anopheles plasmodium-re 20.2 4.7E+02 0.016 23.3 12.7 21 9-29 460-480 (597)
No 1
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.14 E-value=1.4e-10 Score=82.24 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=64.8
Q ss_pred HHHHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhh
Q 027389 134 QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDT 203 (224)
Q Consensus 134 ~~ll~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~ 203 (224)
+.|-+-.++|++|.+.+.++.++|.+|+.+|+.||++|.++++++.+++..++.+.++|+.|.||..+||
T Consensus 12 ~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK 81 (81)
T 2nps_C 12 ERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR 81 (81)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence 5667778889999999999999999999999999999999999999999999999999999999998875
No 2
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=98.91 E-value=6.9e-09 Score=76.67 Aligned_cols=87 Identities=10% Similarity=0.102 Sum_probs=71.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Q 027389 5 SSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRH 84 (224)
Q Consensus 5 ~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~ 84 (224)
.-|+.+-.++..+-.+|..+|..+... .++++++....+|+..|+++.++|++|+.++++.|++. ...|
T Consensus 15 elFe~YE~df~~l~~~i~~kl~~i~~~-------~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~----R~~~ 83 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDLQGVPERLLGT-------AGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTF----RNPM 83 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH----HHHH
Confidence 478899999999999998888875321 13377888999999999999999999999999998643 4567
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027389 85 QEILQDLTQEFYRLRSSL 102 (224)
Q Consensus 85 r~~L~~~~~ef~rlk~~~ 102 (224)
..+|++|++|+.+++.++
T Consensus 84 ~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 84 MSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 778889998888887765
No 3
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=98.87 E-value=2e-09 Score=73.21 Aligned_cols=62 Identities=24% Similarity=0.268 Sum_probs=56.1
Q ss_pred HHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHh
Q 027389 136 LLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKR 197 (224)
Q Consensus 136 ll~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~r 197 (224)
|-+-.++|++|.+.+.++.++|.+|+.+|+.||++|.+++.++.+++..+..+.++|+.|.|
T Consensus 4 L~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R 65 (65)
T 1gl2_C 4 MNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR 65 (65)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence 34567899999999999999999999999999999999999999999999999999998864
No 4
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=98.80 E-value=2.4e-08 Score=73.78 Aligned_cols=88 Identities=15% Similarity=0.155 Sum_probs=70.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Q 027389 5 SSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRH 84 (224)
Q Consensus 5 ~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~ 84 (224)
.-|+.+-.++..+-.+|..+|..+..+ ++++++....+|+..|+++.++|++|+.++++.||+. ...|
T Consensus 5 elFe~YE~df~~l~~~i~~kl~~i~~~--------~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~----R~~~ 72 (102)
T 1vcs_A 5 SSGEGYEQDFAVLTAEITSKIARVPRL--------PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQS----RGMY 72 (102)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHGGGS--------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTT----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc--------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHh----HHHH
Confidence 467888889999999999998875432 3367888999999999999999999999999998653 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027389 85 QEILQDLTQEFYRLRSSLKA 104 (224)
Q Consensus 85 r~~L~~~~~ef~rlk~~~~~ 104 (224)
..+|++|+.|+.+++..++.
T Consensus 73 ~~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 73 SNRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66888888888887777654
No 5
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=98.77 E-value=1e-07 Score=69.76 Aligned_cols=88 Identities=9% Similarity=0.032 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhHHHHHH
Q 027389 6 SWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSG--GSEMVSHTLTR 83 (224)
Q Consensus 6 ~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~--~~~~~~~~l~r 83 (224)
-|+++-.++..+-.+|..+|..+.. .++++++....+|+..++++.++|++|+.++++. ||+. ...
T Consensus 2 lF~~YE~df~~~~~~i~~~l~~~~~--------~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~----R~~ 69 (97)
T 3onj_A 2 LLISYESDFKTTLEQAKASLAEAPS--------QPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASE----RAT 69 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGG--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhc--------cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH----HHH
Confidence 3777888888888888888876541 2447889999999999999999999999999999 6542 456
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHH
Q 027389 84 HQEILQDLTQEFYR-LRSSLKAK 105 (224)
Q Consensus 84 ~r~~L~~~~~ef~r-lk~~~~~~ 105 (224)
|..+|++|++|+.+ ++..++..
T Consensus 70 ~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 70 YKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 77788888888888 88777653
No 6
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=98.23 E-value=4.6e-06 Score=58.55 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=56.9
Q ss_pred HHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHH
Q 027389 136 LLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK 196 (224)
Q Consensus 136 ll~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~ 196 (224)
+-...+++++|.+.+.++.+.|.+|+.+|..||+.|.+++++|.++++.+..+.++|+.|.
T Consensus 18 ~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~ 78 (79)
T 1n7s_C 18 ADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence 3345678999999999999999999999999999999999999999999999999999886
No 7
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=97.81 E-value=2.4e-05 Score=50.86 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHH
Q 027389 144 NRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI 195 (224)
Q Consensus 144 ~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I 195 (224)
++|.+.+.+..+.|..|+..|..||+.|.++.+.|.++++.+..+.++|+.|
T Consensus 3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m 54 (54)
T 1nhl_A 3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence 5788999999999999999999999999999999999999999999888753
No 8
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=96.29 E-value=0.014 Score=39.72 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=51.2
Q ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHh
Q 027389 141 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKR 197 (224)
Q Consensus 141 ~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~r 197 (224)
++-+++.+++.+..+.|..|+..|..|.+.|.++.+.|-.+...+..+..-+..|+.
T Consensus 12 ~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 12 ASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456777888889999999999999999999999999999999999999888887764
No 9
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=95.61 E-value=0.0069 Score=42.58 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=46.3
Q ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHH
Q 027389 141 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI 195 (224)
Q Consensus 141 ~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I 195 (224)
++.+++.+++.+.-..|..|+..|..|++.|.++.+.|-.+.+.+..+.+.|+.|
T Consensus 27 ~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L 81 (83)
T 1l4a_C 27 ESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGM 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777778888899999999999999999999999999998887776665544
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=94.98 E-value=0.18 Score=35.70 Aligned_cols=80 Identities=13% Similarity=0.278 Sum_probs=43.1
Q ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhcc---CC-cHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 027389 141 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSR---LP-SVNQILSSIKRKKSMDTIILALVASVCTFL 216 (224)
Q Consensus 141 ~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~---l~-~s~~ll~~I~rR~~rd~~Il~~vi~~~i~~ 216 (224)
+.|......+||+-++-..-.+.+-+-.+.|....+|-.++... |- .+..+=+.|-.+..+=++|++++++ ++++
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~-~il~ 83 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICA-IILI 83 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 45666666666666666666666666666666555554444432 22 2233444555555555566665553 3334
Q ss_pred HHHHH
Q 027389 217 IFIYW 221 (224)
Q Consensus 217 ~~~~~ 221 (224)
+++.|
T Consensus 84 ii~~~ 88 (91)
T 3hd7_A 84 IIIVY 88 (91)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 34433
No 11
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=94.39 E-value=0.8 Score=34.56 Aligned_cols=96 Identities=5% Similarity=0.094 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHh---cCCchhh---H
Q 027389 5 SSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVS---SGGSEMV---S 78 (224)
Q Consensus 5 ~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~---~~~~~~~---~ 78 (224)
-+|-..+.++.+.=+.++..+.+|..+....+++ +..+...+..|+...|..+...++.++.-|. +.| .+. .
T Consensus 27 DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~-s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np-~kF~l~~ 104 (130)
T 4dnd_A 27 DPFFVVRGEVQKAVNTARGLYQRWCELLQESAAV-GREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANP-GKFKLPA 104 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHCCCH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH-HhcCCCH
Confidence 4899999999888888888888888776543222 2345566777778888777777777776554 222 211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 79 HTLTRHQEILQDLTQEFYRLRSSL 102 (224)
Q Consensus 79 ~~l~r~r~~L~~~~~ef~rlk~~~ 102 (224)
..+.+.|.-+.+.+.+.+.++..+
T Consensus 105 ~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 105 GDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458888888888888888887654
No 12
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=91.29 E-value=3 Score=30.25 Aligned_cols=56 Identities=5% Similarity=-0.060 Sum_probs=40.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhh
Q 027389 143 INRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRK 198 (224)
Q Consensus 143 L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR 198 (224)
+.+=.+.+-++-++-...-.-...|.+.+.++-.-+.++...+...+.=+.+-.+.
T Consensus 23 I~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~y 78 (109)
T 3hd7_B 23 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555667899999999999999999999888877655433
No 13
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=89.28 E-value=0.14 Score=38.26 Aligned_cols=75 Identities=9% Similarity=0.224 Sum_probs=46.8
Q ss_pred HhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHH----HHHHHHhhhhhhhHHHHHHHHHH
Q 027389 139 EHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQ----ILSSIKRKKSMDTIILALVASVC 213 (224)
Q Consensus 139 e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~----ll~~I~rR~~rd~~Il~~vi~~~ 213 (224)
+.+.|......+|++-++-..-.+.+-+-.+.|....+|-.++...-..-.+ +-+++-.+..+=.+|++++++++
T Consensus 31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~ii 109 (119)
T 2kog_A 31 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAII 109 (119)
T ss_dssp SCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888889999999988888888888777777666665554443333333 33334444444444555454333
No 14
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=88.53 E-value=7.6 Score=30.42 Aligned_cols=102 Identities=11% Similarity=-0.000 Sum_probs=59.2
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhH-------HhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027389 1 MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAE-------NDLESGIDWLLKQLQQVNIQMQDWVSSGG 73 (224)
Q Consensus 1 ~~~~~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~-------~~l~~eI~~~L~~~~~~~~~m~~~v~~~~ 73 (224)
|+.|+.|-..=.+....=..|..++..+.++-....++....+. ..+..+|..+...+...+..|.......
T Consensus 1 ~~~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~~- 79 (196)
T 1fio_A 1 MHDFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHD- 79 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-
Confidence 44466788877888888888888888888886553322122221 2244555556666666666666543221
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 74 SEMVSHTLTRHQEILQDLTQEFYRLRSSLKA 104 (224)
Q Consensus 74 ~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~ 104 (224)
...+.....+...|.+.-.+|+.+...+..
T Consensus 80 -r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~ 109 (196)
T 1fio_A 80 -TNKQAQAENSRQRFLKLIQDYRIVDSNYKE 109 (196)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112233455556666666677666666544
No 15
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=88.46 E-value=12 Score=32.52 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 47 LESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKA 104 (224)
Q Consensus 47 l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~ 104 (224)
+....-..++++.+-++.++..+.+.+.... + ..+..+++++-+++..+..
T Consensus 189 ivd~y~~~l~~l~~~id~lE~~v~~~~~~~~---l----~~l~~lrr~l~~lrr~l~p 239 (363)
T 2iub_A 189 LVDDYFVLLEKIDDEIDVLEEEVLERPEKET---V----QRTHQLKRNLVELRKTIWP 239 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCCHHH---H----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHH---H----HHHHHHHHHHHHHHHHHHH
Confidence 3344455566777777777777665543211 2 2566677777666666644
No 16
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=88.02 E-value=0.59 Score=26.81 Aligned_cols=21 Identities=10% Similarity=0.352 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 027389 204 IILALVASVCTFLIFIYWVTK 224 (224)
Q Consensus 204 ~Il~~vi~~~i~~~~~~~~~k 224 (224)
+|+|-++++.++.+++|||+|
T Consensus 12 IVvgdi~~t~~i~~~vy~~~r 32 (33)
T 2l34_A 12 IVVGDLVLTVLIALAVYFLGR 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred EeHHHHHHHHHHHHHHhheec
Confidence 466777777777778888876
No 17
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=82.24 E-value=23 Score=30.28 Aligned_cols=50 Identities=20% Similarity=0.239 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 48 ESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKA 104 (224)
Q Consensus 48 ~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~ 104 (224)
.......++++++-++.++..+.+.+.... + ..+.++++++-.++..+..
T Consensus 166 vd~~~~~l~~l~~~i~~lE~~l~~~~~~~~---l----~~l~~lrr~l~~lrr~l~~ 215 (339)
T 4ev6_A 166 TRSYSRILMNLEDELEELEDKLLAGYDREV---M----EKILGLRKTLVYFHKSLIA 215 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCCCHHH---H----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhH---H----HHHHHHHHHHHHHHHHhhh
Confidence 334445556666666666665554443221 2 2455666666666665544
No 18
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=75.52 E-value=0.49 Score=26.43 Aligned_cols=19 Identities=42% Similarity=0.908 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027389 205 ILALVASVCTFLIFIYWVT 223 (224)
Q Consensus 205 Il~~vi~~~i~~~~~~~~~ 223 (224)
|++-+|..|++-++-||+.
T Consensus 7 iia~visGcivalF~hWL~ 25 (30)
T 4b19_A 7 IIAPVISGCAIAFFSYWLS 25 (30)
T ss_dssp STTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4466788899999999984
No 19
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.01 E-value=19 Score=26.64 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=44.1
Q ss_pred CCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 39 KVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSL 102 (224)
Q Consensus 39 ~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~ 102 (224)
....+...+...|...|-.++..+..|...+...+++ ......|+.|++.......+-+..
T Consensus 7 ~d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~---kDt~~LR~kl~~~~~~t~~l~k~t 67 (130)
T 2dnx_A 7 GQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTK---QDSSKLQENLQQLQHSTNQLAKET 67 (130)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS---SCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999999998877643 234556677777765555554444
No 20
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=69.89 E-value=6.1 Score=29.15 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhc---cCCcHHHHHHHHHhhhhhh
Q 027389 146 STGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSS---RLPSVNQILSSIKRKKSMD 202 (224)
Q Consensus 146 S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~---~l~~s~~ll~~I~rR~~rd 202 (224)
+...+..+-++-.++..-+...-+.+-.=..||.++.+ .|........+=.++.++.
T Consensus 31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rk 90 (119)
T 2kog_A 31 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 90 (119)
T ss_dssp SCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444444444444432 3444444444433333333
No 21
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=69.77 E-value=10 Score=24.46 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=41.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHH
Q 027389 142 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILS 193 (224)
Q Consensus 142 ~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~ 193 (224)
.|+.=+..+..+=.+|..|-+++..|+..|......+-.+...+...++=+.
T Consensus 10 ~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~ 61 (65)
T 1gl2_D 10 GLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVT 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677778888899999999999999999999988888777665554443
No 22
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=68.25 E-value=15 Score=23.70 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=43.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHH
Q 027389 142 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSS 194 (224)
Q Consensus 142 ~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~ 194 (224)
.|+.=+..+..+=.+|..+-.+|..|...|..+..++-.+...+...++=+.+
T Consensus 11 ~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 11 NLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45666667777788999999999999999999999998888887776655443
No 23
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=67.53 E-value=19 Score=24.35 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=48.9
Q ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhh
Q 027389 141 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRK 198 (224)
Q Consensus 141 ~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR 198 (224)
+.|+.=+..+..+=.+|..|-++|..|+..|......+-.+...+...++=+..+.++
T Consensus 19 ~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~ 76 (82)
T 2nps_D 19 EQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHM 76 (82)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777888888899999999999999999999999999998888777766666554
No 24
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=67.14 E-value=4.1 Score=24.79 Aligned_cols=16 Identities=0% Similarity=0.034 Sum_probs=6.7
Q ss_pred HHHHHHHHHHH-HHHHH
Q 027389 207 ALVASVCTFLI-FIYWV 222 (224)
Q Consensus 207 ~~vi~~~i~~~-~~~~~ 222 (224)
+|+.+++++++ +||++
T Consensus 19 gGv~~~~ii~~~~~~~~ 35 (44)
T 2ks1_B 19 GALLLLLVVALGIGLFM 35 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444444444 33443
No 25
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=66.94 E-value=30 Score=24.28 Aligned_cols=84 Identities=12% Similarity=0.279 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHh---cCCchhhHHHH
Q 027389 5 SSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVS---SGGSEMVSHTL 81 (224)
Q Consensus 5 ~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~---~~~~~~~~~~l 81 (224)
-+|..+..++...=+.+...+.+.+. .++ .....|++..++++.+.++.++.-+. +.++.- +
T Consensus 6 DPF~~V~~D~~~ql~~l~~~~~~~~~----~~~-------~~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~E----I 70 (95)
T 2c5k_T 6 DPFQQVVKDTKEQLNRINNYITRHNT----AGD-------DDQEEEIQDILKDVEETIVDLDRSIIVMKRDENED----V 70 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCC----C---------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCC----C
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHccC----CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH----H
Confidence 57888888888877777777665322 111 12333444444444444444443222 112221 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027389 82 TRHQEILQDLTQEFYRLRSSLK 103 (224)
Q Consensus 82 ~r~r~~L~~~~~ef~rlk~~~~ 103 (224)
++=+..+.+++.++..++..+.
T Consensus 71 ~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 71 SGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3335567777777777766653
No 26
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=65.34 E-value=14 Score=25.39 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=47.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHH
Q 027389 142 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK 196 (224)
Q Consensus 142 ~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~ 196 (224)
.|+.=...+..+=.+|..+=.+|..|...|..+..++-.+...+...++=+.++.
T Consensus 30 ~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll 84 (87)
T 1sfc_D 30 NLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 4777778888888999999999999999999999999999888887776665554
No 27
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=65.00 E-value=13 Score=25.77 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=47.5
Q ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHH
Q 027389 141 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI 195 (224)
Q Consensus 141 ~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I 195 (224)
..|+.=...+..+=.+|..+-.+|..|+..|..+..++-.+...+...++=+.++
T Consensus 30 ~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl 84 (87)
T 1l4a_D 30 NNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL 84 (87)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777888888899999999999999999999999999999988887766554
No 28
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=65.00 E-value=4.8 Score=24.50 Aligned_cols=6 Identities=0% Similarity=-0.014 Sum_probs=2.4
Q ss_pred HHHHHH
Q 027389 212 VCTFLI 217 (224)
Q Consensus 212 ~~i~~~ 217 (224)
++++++
T Consensus 23 v~ii~~ 28 (44)
T 2l2t_A 23 LVIVGL 28 (44)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334444
No 29
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=63.13 E-value=27 Score=22.44 Aligned_cols=57 Identities=9% Similarity=0.156 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 47 LESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEH 108 (224)
Q Consensus 47 l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~~~~R 108 (224)
++.+++..|+++...+..+-..+...+ .-+..+...|+++..++.+....+..+..|
T Consensus 4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig-----~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~r 60 (66)
T 1n7s_D 4 RENEMDENLEQVSGIIGNLRHMALDMG-----NEIDTQNRQIDRIMEKADSNKTRIDEANQR 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 556666666666666666655443322 225555666677766666666666554444
No 30
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=61.17 E-value=18 Score=23.52 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=40.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHH
Q 027389 142 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQIL 192 (224)
Q Consensus 142 ~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll 192 (224)
-|..-...+-.+=.+|.++-..+-.|+..|..+..+.-.+...+..-+.=|
T Consensus 11 nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl 61 (64)
T 3b5n_D 11 NLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRL 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666677777789999999999999999999999988887766555433
No 31
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=60.93 E-value=44 Score=24.12 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=34.1
Q ss_pred HHhHHHHHHH-----HHHHHHHHHHHHHHHHhcCC---chhhHHHHHHHHHHHHHHHHHHHHH
Q 027389 44 ENDLESGIDW-----LLKQLQQVNIQMQDWVSSGG---SEMVSHTLTRHQEILQDLTQEFYRL 98 (224)
Q Consensus 44 ~~~l~~eI~~-----~L~~~~~~~~~m~~~v~~~~---~~~~~~~l~r~r~~L~~~~~ef~rl 98 (224)
...++..|+. .|+++..-|..|..+|.+.. |+ +.+..|++.+..++..+..+
T Consensus 44 ~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~fLp~---YD~R~~q~~i~~L~~~l~e~ 103 (111)
T 2l3l_A 44 RAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLAA---YDLRQGQEALARLQAALAER 103 (111)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTTSCH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhhccH---HHHHHHHHHHHHHHHHHHHH
Confidence 3445555443 37777778888888888764 33 66777777777777555544
No 32
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=60.72 E-value=68 Score=26.22 Aligned_cols=52 Identities=17% Similarity=0.076 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHH
Q 027389 7 WDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQL 58 (224)
Q Consensus 7 w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~ 58 (224)
.+++.++.+++|++|+..-+...++-....+..+..+...+..+|+..=.+.
T Consensus 55 l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i 106 (256)
T 3na7_A 55 KLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERS 106 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776655555554332111112234455555555433333
No 33
>2l35_A DAP12-NKG2C_TM; immunoreceptor, transmembrane assembly, DAP12-NKG2C complex; NMR {Homo sapiens}
Probab=53.50 E-value=14 Score=24.09 Aligned_cols=21 Identities=10% Similarity=0.352 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 027389 204 IILALVASVCTFLIFIYWVTK 224 (224)
Q Consensus 204 ~Il~~vi~~~i~~~~~~~~~k 224 (224)
+|++-+++++++.+..|+|+|
T Consensus 12 IIv~DIi~TllLal~VY~~A~ 32 (63)
T 2l35_A 12 IVVGDLVLTVLIALAVYFLGR 32 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhhcc
Confidence 567777788888888888875
No 34
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=51.48 E-value=13 Score=20.18 Aligned_cols=17 Identities=35% Similarity=0.817 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027389 205 ILALVASVCTFLIFIYW 221 (224)
Q Consensus 205 Il~~vi~~~i~~~~~~~ 221 (224)
+++|.++.+.++-+-+|
T Consensus 8 viaglvalltflafgfw 24 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFW 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555444444
No 35
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=50.79 E-value=28 Score=24.58 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027389 50 GIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLR 99 (224)
Q Consensus 50 eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk 99 (224)
|.+.+|++++--+..+. ....+.+..++..|+..|..++.+|++++
T Consensus 49 EA~ell~qMelE~r~~p----~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 49 EARELLEQMDLEVREIP----PQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHTTSC----TTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHhCC----HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443333322 22223455566667777777776666654
No 36
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=49.65 E-value=59 Score=22.16 Aligned_cols=64 Identities=9% Similarity=0.166 Sum_probs=49.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027389 43 AENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASL 111 (224)
Q Consensus 43 ~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~~~~R~eL 111 (224)
....++.+++..|+++...+..+...+-..+ .-+..+...|+++..++.+....+..+..|-.-
T Consensus 19 ~~d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig-----~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 19 TNDARENEMDENLEQVSGIIGNLRHMALDMG-----NEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3466888999999999998888887664433 347778889999999999988888776666443
No 37
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=48.40 E-value=60 Score=21.89 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=31.4
Q ss_pred HHHHHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHH
Q 027389 133 EQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQIL 192 (224)
Q Consensus 133 ~~~ll~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll 192 (224)
.++||...++|++|...+.+...++.++=+==..==+-|..-+..|..+-.++..++.-+
T Consensus 4 R~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l 63 (81)
T 2nps_C 4 RAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANL 63 (81)
T ss_dssp TTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHH
Confidence 356667777777777777776666666522111112344444555555444444444433
No 38
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=48.20 E-value=34 Score=20.74 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027389 85 QEILQDLTQEFYRLRSSLKAKQEHASL 111 (224)
Q Consensus 85 r~~L~~~~~ef~rlk~~~~~~~~R~eL 111 (224)
+++|.++++|+++.|..+-.+. |.+|
T Consensus 14 qEIL~E~RkElqK~K~EIIeAi-~~El 39 (45)
T 1use_A 14 QELLEEVKKELQKVKEEIIEAF-VQEL 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 5789999999999998886653 4444
No 39
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=48.05 E-value=53 Score=21.19 Aligned_cols=23 Identities=35% Similarity=0.435 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027389 47 LESGIDWLLKQLQQVNIQMQDWV 69 (224)
Q Consensus 47 l~~eI~~~L~~~~~~~~~m~~~v 69 (224)
++.+++..|+++...+..+...+
T Consensus 4 ~E~e~D~nLd~l~~~~~rlk~ma 26 (64)
T 3b5n_D 4 MELEIDRNLDQIQQVSNRLKKMA 26 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Confidence 45566666666666666555544
No 40
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=47.60 E-value=51 Score=22.99 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHhcCCchhhHHHHHHHHHHHHH-HHHHHHHHH
Q 027389 48 ESGIDWLLKQLQQVNIQM--QDWVSSGGSEMVSHTLTRHQEILQD-LTQEFYRLR 99 (224)
Q Consensus 48 ~~eI~~~L~~~~~~~~~m--~~~v~~~~~~~~~~~l~r~r~~L~~-~~~ef~rlk 99 (224)
..|.+.+|++++--+..+ ..-.+ +++..++..|+..|.. ++++|+++.
T Consensus 43 ldEA~ell~qMelE~~~~~~p~~~R----~~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 43 QDELFDLLDQMDVEVNNSIGDASER----ATYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHH----HHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666666555555 32222 3466778899999999 999888874
No 41
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=40.52 E-value=67 Score=21.96 Aligned_cols=59 Identities=8% Similarity=0.152 Sum_probs=42.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 45 NDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEH 108 (224)
Q Consensus 45 ~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~~~~R 108 (224)
...+.+++..|+++...+..+-..+...+ .-+.++...|+++..+..+....+..+..|
T Consensus 22 d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg-----~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r 80 (87)
T 1l4a_D 22 DAREDDMENNMKEVSSMIGNLRNMAIDMG-----NEIGSQNRQVDRIQQKAESNESRIDEANKK 80 (87)
T ss_dssp SHHHHHHHHHHHHHHTTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTHHHHTHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778888899988888888877665433 337777778888887777777766555444
No 42
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=40.39 E-value=34 Score=19.61 Aligned_cols=18 Identities=33% Similarity=0.659 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH-HHHH
Q 027389 204 IILALVASVCTFLI-FIYW 221 (224)
Q Consensus 204 ~Il~~vi~~~i~~~-~~~~ 221 (224)
+|.|.+++++++-- ++||
T Consensus 12 ~i~gl~vif~~lg~tflyw 30 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTFLYW 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCceeEEE
Confidence 34455544444433 4555
No 43
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=38.80 E-value=74 Score=20.19 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 50 GIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEH 108 (224)
Q Consensus 50 eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~~~~R 108 (224)
+.+..|+.+...+..+-..+...+ .-+..+...|+++..++.+....+..+..|
T Consensus 6 eqD~~Ld~L~~~v~~lk~~a~~Ig-----~El~~Qn~lLd~l~~~~d~~~~~l~~~~~r 59 (65)
T 1gl2_D 6 EQDAGLDALSSIISRQKQMGQEIG-----NELDEQNEIIDDLANLVENTDEKLRTEARR 59 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555444332221 235555667777777777776666655544
No 44
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=34.99 E-value=30 Score=21.84 Aligned_cols=10 Identities=20% Similarity=-0.037 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 027389 204 IILALVASVC 213 (224)
Q Consensus 204 ~Il~~vi~~~ 213 (224)
+|+.++++.+
T Consensus 14 iIi~svl~GL 23 (54)
T 2knc_A 14 WVLVGVLGGL 23 (54)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 45
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=33.23 E-value=33 Score=21.63 Aligned_cols=10 Identities=20% Similarity=0.066 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 027389 204 IILALVASVC 213 (224)
Q Consensus 204 ~Il~~vi~~~ 213 (224)
+|+.++++.+
T Consensus 11 iIi~svl~GL 20 (54)
T 2l8s_A 11 VILLSAFAGL 20 (54)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 46
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=33.01 E-value=74 Score=21.60 Aligned_cols=33 Identities=9% Similarity=0.404 Sum_probs=22.8
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027389 190 QILSSIKRKKSMDTIILALVASVCTFLIFIYWV 222 (224)
Q Consensus 190 ~ll~~I~rR~~rd~~Il~~vi~~~i~~~~~~~~ 222 (224)
..+...-....|.-++.|.-++.|+++++..|+
T Consensus 9 ~~ld~~~~~~~~~~I~~G~~iGAs~llliil~l 41 (80)
T 2k9p_A 9 DELQGLVNSTVTQAILFGVRSGAAALTLIVVWI 41 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666677778888888888877755554
No 47
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=32.95 E-value=2e+02 Score=23.50 Aligned_cols=100 Identities=9% Similarity=0.070 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCch------hHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Q 027389 5 SSWDALRKQARKLEAQLDEQMHSYRKLVSSK-GSTKVDA------AENDLESGIDWLLKQLQQVNIQMQDWVSSG----- 72 (224)
Q Consensus 5 ~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~-~~~~~~~------~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~----- 72 (224)
+.|-..=.+....=..|..++..+.++.... +++..+. +-..+..+|...+..+...|..|...+...
T Consensus 44 ~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~ 123 (279)
T 2xhe_B 44 ADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGT 123 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 5688888888888888899999999887543 2222111 123355667777777777888887765432
Q ss_pred ---C-ch---h-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 73 ---G-SE---M-VSHTLTRHQEILQDLTQEFYRLRSSLKA 104 (224)
Q Consensus 73 ---~-~~---~-~~~~l~r~r~~L~~~~~ef~rlk~~~~~ 104 (224)
+ ++ . .+.....+...|.+.-.+|+.....+..
T Consensus 124 ~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e 163 (279)
T 2xhe_B 124 FEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKR 163 (279)
T ss_dssp CSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 1 1233455566667777777776666543
No 48
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=32.09 E-value=96 Score=19.51 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Q 027389 81 LTRHQEILQDLTQEFYRLRSSLKAK-QEHASL 111 (224)
Q Consensus 81 l~r~r~~L~~~~~ef~rlk~~~~~~-~~R~eL 111 (224)
+=..++.+.++++|+++++..+.++ +.|-+|
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~L 43 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDL 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446788999999999999887553 334444
No 49
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=31.18 E-value=60 Score=22.85 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=10.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 027389 44 ENDLESGIDWLLKQLQQVNIQM 65 (224)
Q Consensus 44 ~~~l~~eI~~~L~~~~~~~~~m 65 (224)
....+.+-..+..++...|.++
T Consensus 17 Fe~YE~df~~l~~~i~~kl~~i 38 (102)
T 2qyw_A 17 FEKLHEIFRGLLEDLQGVPERL 38 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444443
No 50
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=30.25 E-value=65 Score=17.04 Aligned_cols=9 Identities=22% Similarity=0.737 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 027389 214 TFLIFIYWV 222 (224)
Q Consensus 214 i~~~~~~~~ 222 (224)
-..++|.||
T Consensus 17 aaVllylW~ 25 (26)
T 3j1r_A 17 AAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 334445555
No 51
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=30.16 E-value=43 Score=19.95 Aligned_cols=10 Identities=20% Similarity=-0.037 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 027389 204 IILALVASVC 213 (224)
Q Consensus 204 ~Il~~vi~~~ 213 (224)
+|+.++++.+
T Consensus 12 iIi~s~l~GL 21 (42)
T 2k1a_A 12 WVLVGVLGGL 21 (42)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 52
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=29.76 E-value=52 Score=21.67 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 027389 204 IILALVASVCTFLIF 218 (224)
Q Consensus 204 ~Il~~vi~~~i~~~~ 218 (224)
+++||++++++++-+
T Consensus 12 ivlGg~~~lll~~gl 26 (70)
T 2klu_A 12 IVLGGVAGLLLFIGL 26 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 356766655444433
No 53
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=28.12 E-value=63 Score=19.33 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027389 5 SSWDALRKQARKLEAQLDEQMHSYRKL 31 (224)
Q Consensus 5 ~~w~~lr~~ar~lE~~i~~kl~~~s~~ 31 (224)
+.=++|-++...||..++.....++.+
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L~~~l~aL 42 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETLIGSIHAL 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345677888888888888877777654
No 54
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=26.77 E-value=71 Score=19.22 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHH
Q 027389 203 TIILALVASVCT 214 (224)
Q Consensus 203 ~~Il~~vi~~~i 214 (224)
..|.++|+++++
T Consensus 12 ~~Ia~~vVGvll 23 (44)
T 2jwa_A 12 TSIISAVVGILL 23 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 346666665433
No 55
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=26.69 E-value=1.5e+02 Score=20.03 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027389 9 ALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSG 72 (224)
Q Consensus 9 ~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~ 72 (224)
.|..+.+.||.+++.--..=...- .+-..+...++..|.++.++-+.|..++.+.
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~~~---------~Elk~l~e~Ld~KI~eL~elRqgLakL~~~~ 78 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERERAR---------AEVGRAAQLLDVSLFELSELREGLARLAEAA 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHHHHHHHHHHHHHhcccC
Confidence 345555555555544333222221 1224455555666666666666666655544
No 56
>1ydi_B Alpha-actinin 4; cell adhesion, structural protein; 1.80A {Homo sapiens}
Probab=25.76 E-value=82 Score=16.68 Aligned_cols=20 Identities=15% Similarity=0.473 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 027389 6 SWDALRKQARKLEAQLDEQM 25 (224)
Q Consensus 6 ~w~~lr~~ar~lE~~i~~kl 25 (224)
.||.|..-+-+-.++|+..+
T Consensus 2 ~WeqL~t~~~r~~neiEnqI 21 (26)
T 1ydi_B 2 GWEQLLTTIARTINEVENQI 21 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 59998888888777777665
No 57
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=25.59 E-value=85 Score=16.81 Aligned_cols=17 Identities=41% Similarity=0.847 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 027389 6 SWDALRKQARKLEAQLD 22 (224)
Q Consensus 6 ~w~~lr~~ar~lE~~i~ 22 (224)
.|+.|.+..-.||+.+.
T Consensus 2 ewealekkcaalesklq 18 (31)
T 3ljm_A 2 EWEALEKKCAALESKLQ 18 (31)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 49999999888887654
No 58
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=25.14 E-value=45 Score=27.94 Aligned_cols=17 Identities=12% Similarity=0.215 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027389 207 ALVASVCTFLIFIYWVT 223 (224)
Q Consensus 207 ~~vi~~~i~~~~~~~~~ 223 (224)
.+++++++++++.|+++
T Consensus 233 ~vl~fL~il~~l~y~~k 249 (263)
T 2yiu_B 233 VSVIFLIVLAALLYLTN 249 (263)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333445444
No 59
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.05 E-value=2.3e+02 Score=21.59 Aligned_cols=104 Identities=17% Similarity=0.077 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC--C-chhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHH
Q 027389 6 SWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTK--V-DAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLT 82 (224)
Q Consensus 6 ~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~--~-~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~ 82 (224)
+.|.+--+..+.-..++..++.+.+.+++.+++- | ..........++..+..+..-|.+++.++..- ...++
T Consensus 25 ~md~~l~~rL~~Rd~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK-----~K~~e 99 (152)
T 3a7p_A 25 SMDDLLIRRLTDRNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALK-----NKNTE 99 (152)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 3444433334444566777777766665443210 0 12233355566666666666666666555321 13355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcc
Q 027389 83 RHQEILQDLTQEFYRLRSSLKAK-QEHASLLED 114 (224)
Q Consensus 83 r~r~~L~~~~~ef~rlk~~~~~~-~~R~eLl~~ 114 (224)
..++.+..++-+|.-+....+.. .+-.+|+.+
T Consensus 100 ~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 100 RLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665555442 234455543
No 60
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=24.16 E-value=93 Score=16.77 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 027389 10 LRKQARKLEAQLDEQMHSYRKLV 32 (224)
Q Consensus 10 lr~~ar~lE~~i~~kl~~~s~~~ 32 (224)
||+..|+.-+.|..||-...+-.
T Consensus 2 lrkrlrkfrnkikeklkkigqki 24 (32)
T 1lyp_A 2 LRKRLRKFRNKIKEKLKKIGQKI 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999998887766543
No 61
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=23.45 E-value=55 Score=27.13 Aligned_cols=9 Identities=22% Similarity=0.615 Sum_probs=4.2
Q ss_pred HHHHHHhhh
Q 027389 25 MHSYRKLVS 33 (224)
Q Consensus 25 l~~~s~~~~ 33 (224)
..-|..+|+
T Consensus 33 ~qvy~~~Ca 41 (248)
T 3cx5_D 33 YQVYREVCA 41 (248)
T ss_dssp HHHHHHTGG
T ss_pred HHHHHHhhh
Confidence 334555544
No 62
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=23.39 E-value=1e+02 Score=18.64 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 027389 203 TIILALVASVCTFLIFI 219 (224)
Q Consensus 203 ~~Il~~vi~~~i~~~~~ 219 (224)
-++=.+.|.+|++++.+
T Consensus 31 lfvnfclilicllli~i 47 (52)
T 1fjk_A 31 LFINFCLILIFLLLICI 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445666666655543
No 63
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=23.03 E-value=1.6e+02 Score=19.57 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027389 50 GIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLL 112 (224)
Q Consensus 50 eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~~~~R~eLl 112 (224)
+-+..|+.+...+..+-..+...+ .-+..+...|+++..++.+....+..+..|-.-+
T Consensus 16 eQD~~Ld~L~~~v~~LK~~a~~Ig-----~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~ 73 (82)
T 2nps_D 16 MQDEQLELVSGSIGVLKNMSQRIG-----GELEEQAVMLEDFSHELESTQSRLDNVMKKLAKV 73 (82)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555554444443332221 2356666778888888877777777666654444
No 64
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.90 E-value=2.2e+02 Score=20.58 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcc
Q 027389 79 HTLTRHQEILQDLTQEFYRLRSSLKA-KQEHASLLED 114 (224)
Q Consensus 79 ~~l~r~r~~L~~~~~ef~rlk~~~~~-~~~R~eLl~~ 114 (224)
..+..|+..+.++..++.+++..+.. .++-.+||.-
T Consensus 75 ~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Llnv 111 (129)
T 3tnu_B 75 LALKDARNKLAELEEALQKAKQDMARLLREYQELMNT 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44777888888888888888887644 4567778753
No 65
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=22.62 E-value=59 Score=26.83 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=4.7
Q ss_pred HHHHHHHhhh
Q 027389 24 QMHSYRKLVS 33 (224)
Q Consensus 24 kl~~~s~~~~ 33 (224)
-..-|...|+
T Consensus 29 G~qvy~~~Ca 38 (241)
T 1pp9_D 29 GFQVYKQVCS 38 (241)
T ss_dssp HHHHHHHTGG
T ss_pred hHHHHHHhhh
Confidence 3334555554
No 66
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=22.53 E-value=1.9e+02 Score=19.72 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhh
Q 027389 149 QMDSVISQAQATLGALVFQRSTFGGINSKLSNVS 182 (224)
Q Consensus 149 ~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~ 182 (224)
.+..+-++-.++..-+...=+.+-.=..|+..+.
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~ 39 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELD 39 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 3344444444444444444444444444444443
No 67
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=22.14 E-value=1.2e+02 Score=17.54 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHH
Q 027389 203 TIILALVASVCTFLI 217 (224)
Q Consensus 203 ~~Il~~vi~~~i~~~ 217 (224)
|+.++.|+++.+.++
T Consensus 5 Ki~Vy~vV~ffvsLF 19 (38)
T 3arc_I 5 KITVYIVVTFFVLLF 19 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred EeeehhHHHHHHHHH
Confidence 455555554444333
No 68
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=22.14 E-value=96 Score=18.33 Aligned_cols=6 Identities=33% Similarity=0.362 Sum_probs=2.4
Q ss_pred HHHHHH
Q 027389 205 ILALVA 210 (224)
Q Consensus 205 Il~~vi 210 (224)
|++|++
T Consensus 12 Iv~gvi 17 (43)
T 2k9j_B 12 VLLSVM 17 (43)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 333444
No 69
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=22.08 E-value=9.1e+02 Score=27.49 Aligned_cols=45 Identities=16% Similarity=0.309 Sum_probs=25.4
Q ss_pred HHHHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Q 027389 134 QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKL 178 (224)
Q Consensus 134 ~~ll~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl 178 (224)
+....|...|+.-......-++.|....+.|..-+..=...-..+
T Consensus 2052 ~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l 2096 (3245)
T 3vkg_A 2052 ATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENF 2096 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence 344455556666555666666666666666666665444443333
No 70
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.63 E-value=4.7e+02 Score=24.05 Aligned_cols=70 Identities=14% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHh--cCC---chhhHHHHH
Q 027389 8 DALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVS--SGG---SEMVSHTLT 82 (224)
Q Consensus 8 ~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~--~~~---~~~~~~~l~ 82 (224)
++||++.-.|+..|+..++.+.. |+.-|+.++.+++.|=-..++-++ +.| ...++-.+.
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrv----------------LQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~ 176 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQL----------------LQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLK 176 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchH
Q ss_pred HHHHHHHHHHH
Q 027389 83 RHQEILQDLTQ 93 (224)
Q Consensus 83 r~r~~L~~~~~ 93 (224)
-|.+.-.++.+
T Consensus 177 sY~~~QKQLeQ 187 (562)
T 3ghg_A 177 DYEDQQKQLEQ 187 (562)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 71
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=21.54 E-value=99 Score=17.62 Aligned_cols=16 Identities=44% Similarity=0.451 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHHHHHH
Q 027389 201 MDTIILALVASVCTFL 216 (224)
Q Consensus 201 rd~~Il~~vi~~~i~~ 216 (224)
+-..|.++|++.++++
T Consensus 6 ~~~sIaagVvglll~v 21 (35)
T 1iij_A 6 PVTFIIATVVGVLLFL 21 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CCcEeHHHHHHHHHHH
Confidence 3445667777643333
No 72
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=21.53 E-value=1.8e+02 Score=19.10 Aligned_cols=26 Identities=8% Similarity=-0.036 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027389 47 LESGIDWLLKQLQQVNIQMQDWVSSG 72 (224)
Q Consensus 47 l~~eI~~~L~~~~~~~~~m~~~v~~~ 72 (224)
...+|...-.+++..+++|...+...
T Consensus 13 ~a~~~~~~~~~i~~~l~~l~~~v~~l 38 (94)
T 3fav_B 13 AASAIQGNVTSIHSLLDEGKQSLTKL 38 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555443
No 73
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=21.27 E-value=65 Score=26.88 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhhh
Q 027389 21 LDEQMHSYRKLVS 33 (224)
Q Consensus 21 i~~kl~~~s~~~~ 33 (224)
|..=..-|...|+
T Consensus 23 LqRG~qvy~evCa 35 (258)
T 1zrt_D 23 LRRGFQVYNEVCS 35 (258)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHh
Confidence 3333444555554
No 74
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=21.12 E-value=60 Score=27.26 Aligned_cols=11 Identities=9% Similarity=0.428 Sum_probs=5.1
Q ss_pred HHHHHHHHhhh
Q 027389 23 EQMHSYRKLVS 33 (224)
Q Consensus 23 ~kl~~~s~~~~ 33 (224)
.=..-|...|+
T Consensus 27 RG~qVy~evCa 37 (269)
T 2qjy_B 27 RGLQVYTEVCA 37 (269)
T ss_dssp HHHHHHHHTGG
T ss_pred HHHHHHHHHHh
Confidence 33344555554
No 75
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=20.95 E-value=1.9e+02 Score=19.14 Aligned_cols=58 Identities=12% Similarity=0.206 Sum_probs=27.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 45 NDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVS-------HTLTRHQEILQDLTQEFYRLRSSL 102 (224)
Q Consensus 45 ~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~-------~~l~r~r~~L~~~~~ef~rlk~~~ 102 (224)
.....+|+..|..+...++.|...-......+.. ....++.+.|.++...+++.-..+
T Consensus 21 ~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~ 85 (98)
T 3gwk_C 21 TAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADII 85 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666776666665433222222211 334444444444444444444444
No 76
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=20.91 E-value=1.9e+02 Score=19.02 Aligned_cols=20 Identities=25% Similarity=0.337 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027389 47 LESGIDWLLKQLQQVNIQMQ 66 (224)
Q Consensus 47 l~~eI~~~L~~~~~~~~~m~ 66 (224)
...+|+..+..+...++.|.
T Consensus 24 ~~~~i~~~l~~L~~~v~~L~ 43 (99)
T 3zbh_A 24 ESSNVTELIARLDQMSHTLQ 43 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554
No 77
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=20.72 E-value=1.5e+02 Score=18.12 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=11.8
Q ss_pred HHhhhhhhhHHHHHH
Q 027389 195 IKRKKSMDTIILALV 209 (224)
Q Consensus 195 I~rR~~rd~~Il~~v 209 (224)
|+||..-+.+.++.+
T Consensus 9 m~RRqfln~l~~G~~ 23 (49)
T 1q90_R 9 MNKRNIMNLILAGGA 23 (49)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 789999998887443
No 78
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=20.24 E-value=2.7e+02 Score=20.64 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027389 58 LQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLED 114 (224)
Q Consensus 58 ~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~~~~R~eLl~~ 114 (224)
..+++.++...+.. +|+....++.++.+.+.+++++...++..+-... =.+|+..
T Consensus 12 ~~~~l~~~a~~Lk~-~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~-~~~l~~~ 66 (171)
T 2zvf_A 12 MERLLREASSILRV-EPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW-ADILMER 66 (171)
T ss_dssp HHHHHHHHHHTTTC-CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTT
T ss_pred HHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 34444444444432 3334446688888899999999988888765532 2446544
No 79
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.20 E-value=2.5e+02 Score=20.30 Aligned_cols=65 Identities=9% Similarity=0.172 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCch----hHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 027389 5 SSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDA----AENDLESGIDWLLKQLQQVNIQMQDWV 69 (224)
Q Consensus 5 ~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~----~~~~l~~eI~~~L~~~~~~~~~m~~~v 69 (224)
+.|+.|-...-..=-.|...++.|.++....+++.... .-..+...+..++.+....+.++..+.
T Consensus 10 ~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~ 78 (130)
T 2dnx_A 10 RDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLP 78 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56888777777777788888888888877665543221 224455566666666666676666543
No 80
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.16 E-value=4.7e+02 Score=23.35 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027389 9 ALRKQARKLEAQLDEQMHSYR 29 (224)
Q Consensus 9 ~lr~~ar~lE~~i~~kl~~~s 29 (224)
+++.+..+++.++...-..+.
T Consensus 460 ~~~~~i~~l~~~~~~~~~~l~ 480 (597)
T 3oja_B 460 ELRAEVQQLTNEQIQQEQLLQ 480 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444333333
Done!