BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027390
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VRQ|A Chain A, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
pdb|2VRQ|B Chain B, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
pdb|2VRQ|C Chain C, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
Length = 496
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 161 ERKAPPTFYFLIEMRERHYWVTHKTEKSVDMLLRGKTPLVEIRKRDDRFNVVVDRWKTY 219
E+K P T + E +WVT K +D L+ + ++++ D R +++VD W T+
Sbjct: 249 EKKGPATGFTTDE-----WWVTLKKALFMDRLVTKHSAIMDVYDPDKRIDLIVDEWGTW 302
>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From
Pyrococcus Abyssi
pdb|1YR7|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp-Gamma-S
Bound Form From Pyrococcus Abyssi
pdb|1YR8|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp Bound Form
From Pyrococcus Abyssi
pdb|1YR9|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Po4
Bound Form From Pyrococcus Abyssi
pdb|1YRA|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRA|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRB|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|1YRB|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|2OXR|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi (After Gtp Hydrolysis)
Length = 262
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 12 ILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 46
++FVG G GKTT+ E R L D ++ V +DT
Sbjct: 17 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51
>pdb|1SHK|A Chain A, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|A Chain A, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
pdb|1SHK|B Chain B, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|B Chain B, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
Length = 173
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 10 KSILFVGRPGVGKTTVMREIARVLSDEF 37
+ I VG G GKTTV RE+AR L EF
Sbjct: 3 EPIFMVGARGCGKTTVGRELARALGYEF 30
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 19/88 (21%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQ 68
K +L G PG GKT + R +A S F TS +G + + AR MQ
Sbjct: 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQ 113
Query: 69 VPEPSLQHKVMIEAVENHMPEVIIVDEI 96
P +I +DE+
Sbjct: 114 -------------------PSIIFIDEV 122
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 19/87 (21%)
Query: 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 69
K +L VG PGVGKT + R +A + RV + S G D +G AR
Sbjct: 65 KGVLLVGPPGVGKTHLARAVA------GEARVPFITAS---GSDFVEMFVGVGAAR---- 111
Query: 70 PEPSLQHKVMIEAVENHMPEVIIVDEI 96
+ + E + H P ++ +DEI
Sbjct: 112 ------VRDLFETAKRHAPCIVFIDEI 132
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 19/87 (21%)
Query: 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 69
K +L VG PGVGKT + R +A + RV + S G D +G AR
Sbjct: 74 KGVLLVGPPGVGKTHLARAVA------GEARVPFITAS---GSDFVEMFVGVGAAR---- 120
Query: 70 PEPSLQHKVMIEAVENHMPEVIIVDEI 96
+ + E + H P ++ +DEI
Sbjct: 121 ------VRDLFETAKRHAPCIVFIDEI 141
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 1 MVYDLLHYGKS-----ILFVGRPGVGKTTVMREIAR-VLSDEFQKRVVIVDTSNEIG 51
+V L HY K+ +LF G PGVGKTT +AR + + ++ + ++ S+E G
Sbjct: 33 IVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG 89
>pdb|1FNN|A Chain A, Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
pdb|1FNN|B Chain B, Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
Length = 389
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45
HY ++ L +GRPG GKT +R++ + D+ R V ++
Sbjct: 43 HYPRATL-LGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 19/87 (21%)
Query: 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 69
K +L VG PGVGKT + R +A + RV + S G D +G AR
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAG------EARVPFITAS---GSDFVEMFVGVGAAR---- 120
Query: 70 PEPSLQHKVMIEAVENHMPEVIIVDEI 96
+ + E + H P ++ +DEI
Sbjct: 121 ------VRDLFETAKRHAPCIVFIDEI 141
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 19/87 (21%)
Query: 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 69
K +L VG PGVGKT + R +A + RV + S G D +G AR
Sbjct: 50 KGVLLVGPPGVGKTHLARAVAG------EARVPFITAS---GSDFVEMFVGVGAAR---- 96
Query: 70 PEPSLQHKVMIEAVENHMPEVIIVDEI 96
+ + E + H P ++ +DEI
Sbjct: 97 ------VRDLFETAKRHAPCIVFIDEI 117
>pdb|2VRK|A Chain A, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
pdb|2VRK|B Chain B, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
pdb|2VRK|C Chain C, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
Length = 496
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 161 ERKAPPTFYFLIEMRERHYWVTHKTEKSVDMLLRGKTPLVEIRKRDDRFNVVVDRWKTY 219
E+K P T + E +WVT K D L+ + + ++ D R +++VD W T+
Sbjct: 249 EKKGPATGFTTDE-----WWVTLKKALFXDRLVTKHSAIXDVYDPDKRIDLIVDEWGTW 302
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 31.2 bits (69), Expect = 0.52, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 1 MVYDLLHYGKSILFVGRPGVGKTTVMREIAR 31
+ YDLL+ + I+ G PG GKT +M R
Sbjct: 1259 IFYDLLNSKRGIILCGPPGSGKTMIMNNALR 1289
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 31.2 bits (69), Expect = 0.52, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 1 MVYDLLHYGKSILFVGRPGVGKTTVMREIAR 31
+ YDLL+ + I+ G PG GKT +M R
Sbjct: 1040 IFYDLLNSKRGIILCGPPGSGKTMIMNNALR 1070
>pdb|2P5T|B Chain B, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human
Pathogen Streptococcus Pneumoniae
pdb|2P5T|D Chain D, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human
Pathogen Streptococcus Pneumoniae
pdb|2P5T|F Chain F, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human
Pathogen Streptococcus Pneumoniae
pdb|2P5T|H Chain H, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human
Pathogen Streptococcus Pneumoniae
Length = 253
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 11 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45
+IL G+ G GKTT I R+ EFQ +VI+D
Sbjct: 34 AILLGGQSGAGKTT----IHRIKQKEFQGNIVIID 64
>pdb|3ADB|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 1)
pdb|3ADB|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 1)
pdb|3ADC|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 2)
pdb|3ADC|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 2)
pdb|3ADD|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 3)
pdb|3ADD|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 3)
Length = 259
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 12 ILFVGRPGVGKTTVMREIARVLS 34
I+ G PGVGK+T + +A++LS
Sbjct: 14 IILTGLPGVGKSTFSKNLAKILS 36
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 31/174 (17%)
Query: 7 HYGKSILF----VGRPGVGKTTVMREIARVLSDEFQK-RVVIVDTSNEIGGDGDIPHSAI 61
+ GK + F G PG GK+T + ++L++ K V+ VD S+ G S +
Sbjct: 68 NKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGG-----SLL 122
Query: 62 GTARRMQV----------PEPSLQ-----HKVMIEAV---ENHMPEVIIVDEIGTEAEAH 103
G RM P P+ + EA+ E ++I+++ +G
Sbjct: 123 GDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVGQSEF 182
Query: 104 ACRSIAERGVMLIGTAHGEWLENIIKNPI-LSDLIGGVDTVTLGDEEARARRCQ 156
A + + V+L+ A G+ L+ I + I ++DL+ T + GD ARR Q
Sbjct: 183 AVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLV--AVTKSDGDLIVPARRIQ 234
>pdb|3A4L|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4L|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3AM1|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Anticodon-StemLOOP TRUNCATED TRNA(SEC)
Length = 260
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 12 ILFVGRPGVGKTTVMREIARVLS 34
I+ G PGVGK+T + +A++LS
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILS 29
>pdb|1E6C|A Chain A, K15m Mutant Of Shikimate Kinase From Erwinia
Chrysanthemi
pdb|1E6C|B Chain B, K15m Mutant Of Shikimate Kinase From Erwinia
Chrysanthemi
Length = 173
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 10 KSILFVGRPGVGKTTVMREIARVLSDEF 37
+ I VG G G TTV RE+AR L EF
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYEF 30
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 6 LHYGKSILFVGRPGVGKTTVMREIA 30
+H G+ ++FVG G GK+T++R IA
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIA 50
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 6 LHYGKSILFVGRPGVGKTTVMREIA 30
+H G+ ++FVG G GK+T++R IA
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIA 50
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter
(Malk) In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter
(Malk) In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 6 LHYGKSILFVGRPGVGKTTVMREIA 30
+H G+ ++FVG G GK+T++R IA
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIA 50
>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae:
A Putative P-Loop Containing Kinase With A Circular
Permutation.
pdb|2GAA|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae:
A Putative P-Loop Containing Kinase With A Circular
Permutation
Length = 359
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQ 38
+Y ++ VG PG GK+T+ E+ +++++++
Sbjct: 22 NYRVCVILVGSPGSGKSTIAEELXQIINEKYH 53
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 13/89 (14%)
Query: 12 ILFVGRPGVGKTTVMREIARVL--SDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 69
+LF G PG GKT+ + + + L D + R++ ++ S+E G I + R+ V
Sbjct: 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG--ISIVREKVKNFARLTV 118
Query: 70 PEPSLQHKVMIEAVENH-MP--EVIIVDE 95
+PS +H +EN+ P ++II+DE
Sbjct: 119 SKPS-KHD-----LENYPCPPYKIIILDE 141
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 11 SILFVGRPGVGKTTVMREIA 30
+IL G PGVGKTT+ +E+A
Sbjct: 6 NILLTGTPGVGKTTLGKELA 25
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 11 SILFVGRPGVGKTTVMREIA 30
+IL G PGVGKTT+ +E+A
Sbjct: 13 NILLTGTPGVGKTTLGKELA 32
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 23/101 (22%)
Query: 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTAR--RM 67
K +L VG PG GKT + + +A G+ +P ++G + M
Sbjct: 45 KGVLLVGPPGTGKTLLAKAVA---------------------GEAHVPFFSMGGSSFIEM 83
Query: 68 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI 108
V + + + + E + P +I +DEI ++ A +
Sbjct: 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV 124
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 19/87 (21%)
Query: 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 69
K ++ G PG GKT + + +A S F R+V + + GDG
Sbjct: 217 KGVILYGAPGTGKTLLAKAVANQTSATFL-RIVGSELIQKYLGDG--------------- 260
Query: 70 PEPSLQHKVMIEAVENHMPEVIIVDEI 96
P L ++ A EN P ++ +DEI
Sbjct: 261 --PRLCRQIFKVAGEN-APSIVFIDEI 284
>pdb|2VL7|A Chain A, Structure Of S. Tokodaii Xpd4
Length = 540
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 43
L +GK++L +PG+GKT VL + +K+V+I
Sbjct: 23 LKHGKTLLLNAKPGLGKTV----FVEVLGMQLKKKVLI 56
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEF 37
G + G PGVGKT++ + IA+ L +F
Sbjct: 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKF 136
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 18/103 (17%)
Query: 12 ILFVGRPGVGKTTVMREIAR-VLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP 70
+LF G PG GKT+ + +AR + + V+ ++ S++ G D R Q+
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGID----------VVRNQIK 98
Query: 71 EPSLQHKVMIEAVENHMPEVIIVDEIG--TEAEAHACRSIAER 111
+ + ++ + ++II+DE T A +A R + ER
Sbjct: 99 DFASTRQIFSKGF-----KLIILDEADAMTNAAQNALRRVIER 136
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 5 LLHYG----KSILFVGRPGVGKTTVMREIARVLSDEF 37
L +G K +LF G PG GKT + + IA F
Sbjct: 41 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 77
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate
Kinase I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate
Kinase I (Arok)
Length = 173
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 10 KSILFVGRPGVGKTTVMREIARVLSDEF 37
++I VG G GK+T+ R++A+ L+ EF
Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEF 32
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 5 LLHYG----KSILFVGRPGVGKTTVMREIARVLSDEF 37
L +G K +LF G PG GKT + + IA F
Sbjct: 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539
>pdb|3KJE|A Chain A, Empty State Of Cooc1
pdb|3KJG|A Chain A, Adp-Bound State Of Cooc1
pdb|3KJG|B Chain B, Adp-Bound State Of Cooc1
pdb|3KJH|A Chain A, Zn-Bound State Of Cooc1
pdb|3KJI|A Chain A, Zn And Adp Bound State Of Cooc1
pdb|3KJI|B Chain B, Zn And Adp Bound State Of Cooc1
Length = 254
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 16 GRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE 71
G+ GVGKTTV + ++++ ++ K + DGD P S +G + + E
Sbjct: 7 GKGGVGKTTVAAGLIKIMASDYDKIYAV---------DGD-PDSCLGQTLGLSIEE 52
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 5 LLHYG----KSILFVGRPGVGKTTVMREIARVLSDEF 37
L +G K +LF G PG GKT + + IA F
Sbjct: 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 24/122 (19%)
Query: 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDI--PHSAIGT 63
+ G++++F+G PG GK T +A+ L F+K GDI H A GT
Sbjct: 1 MDVGQAVIFLGPPGAGKGTQASRLAQELG--FKKLST-----------GDILRDHVARGT 47
Query: 64 ARRMQVPEPSLQH------KVMIEAVENHMPEVIIVDEIG-TEAEAHAC-RSIAERGVML 115
+V P ++ +++E + + E +I D T A+A A R ++E G L
Sbjct: 48 PLGERV-RPIMERGDLVPDDLILELIREELAERVIFDGFPRTLAQAEALDRLLSETGTRL 106
Query: 116 IG 117
+G
Sbjct: 107 LG 108
>pdb|4BC5|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
Length = 538
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 12/54 (22%)
Query: 20 VGKTTVMREIARVLSDEFQKRVVIVDTSNE------------IGGDGDIPHSAI 61
G + REI +VL+D F V ++DT+N + G D+P S +
Sbjct: 441 TGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHGLAGGTDVPFSEV 494
>pdb|3EC2|A Chain A, Crystal Structure Of The Dnac Helicase Loader
Length = 180
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI 50
GK + FVG PGVGKT + + + ++ R DT + I
Sbjct: 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79
>pdb|3ECC|A Chain A, Crystal Structure Of The Dnac Helicase Loader In Complex
With Adp-Bef3
Length = 185
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI 50
GK + FVG PGVGKT + + + ++ R DT + I
Sbjct: 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79
>pdb|4BC2|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC3|A Chain A, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|B Chain B, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|C Chain C, Crystal Structure Of Human D-xylulokinase
pdb|4BC4|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
Length = 538
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 12/54 (22%)
Query: 20 VGKTTVMREIARVLSDEFQKRVVIVDTSNE------------IGGDGDIPHSAI 61
G + REI +VL+D F V ++DT+N + G D+P S +
Sbjct: 441 TGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHGLAGGTDVPFSEV 494
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 7 HYGKSIL-FVGRPGVGKTTVMREIA 30
H GK ++ VGRP VGK+T+ IA
Sbjct: 20 HMGKPVVAIVGRPNVGKSTIFNRIA 44
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVL 33
G+++L G+PG GKT + +A+ L
Sbjct: 70 GRAVLIAGQPGTGKTAIAMGMAQAL 94
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 10 KSILFVGRPGVGKTTVMREIA 30
K IL VG PG GKT + R +A
Sbjct: 50 KGILLVGPPGTGKTLLARAVA 70
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEF 37
G+S+ VG G GKTTV + +AR L F
Sbjct: 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTF 76
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1NLY|A Chain A, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLY|B Chain B, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLZ|A Chain A, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|B Chain B, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|C Chain C, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|D Chain D, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|E Chain E, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|F Chain F, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1OPX|A Chain A, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
pdb|1OPX|B Chain B, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
Length = 330
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI 50
+ D + GK+++ G G GKTT ++ I + E +R++ ++ + EI
Sbjct: 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIXEFIPKE--ERIISIEDTEEI 210
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 12 ILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP- 70
I+FVG G GKTT ++A + K +I + G + +A + ++P
Sbjct: 104 IMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNAT----KARIPF 159
Query: 71 -------EPSLQHKVMIEAVENHMPEVIIVDEIG 97
+P + +E +N E+IIVD G
Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSG 193
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI 50
+ D + GK+++ G G GKTT ++ I + E +R++ ++ + EI
Sbjct: 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTEEI 210
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 31/181 (17%)
Query: 14 FVGRPGVGKTTVMREIARVLSDEFQKRVVI-VD-TSNEIGGDGDIPHSAIGTARRMQ--- 68
G PGVGK+T + + +L+ K V+ VD +S GG S +G RM
Sbjct: 60 ITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGG------SILGDKTRMARLA 113
Query: 69 -------VPEPSLQHKVMIEA--------VENHMPEVIIVDEIGTEAEAHACRSIAERGV 113
P PS + A E +VI+V+ +G A + + +
Sbjct: 114 IDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFL 173
Query: 114 MLIGTAHGEWLENIIKNPI-LSDLIGGVDTVTLGDEEARARRCQ---KSILERKAPPTFY 169
+L+ G+ L+ I K L+D+I V+ GD E RA ++ L PP+
Sbjct: 174 VLMLPGAGDELQGIKKGIFELADMI-AVNKADDGDGERRASAAASEYRAALHILTPPSAT 232
Query: 170 F 170
+
Sbjct: 233 W 233
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVL 33
G+++L G+PG GKT + A+ L
Sbjct: 85 GRAVLIAGQPGTGKTAIAXGXAQAL 109
>pdb|2AM1|A Chain A, Sp Protein Ligand 1
pdb|2AM2|A Chain A, Sp Protein Ligand 2
Length = 454
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 21/106 (19%)
Query: 21 GKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMI 80
GKTT +A +LS ++ + +NEIG +P++ + PE + K+++
Sbjct: 110 GKTTTKDXLAHLLSTRYKTYKTQGNYNNEIG----LPYTV------LHXPEGT--EKLVL 157
Query: 81 EAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLEN 126
E ++H+ ++ ++ E+ A V L+G AH + ++
Sbjct: 158 EXGQDHLGDIHLLSELARPKTAI---------VTLVGEAHLAFFKD 194
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDE 36
G+++L G PG GKT + IA+ L +
Sbjct: 77 GRAVLLAGPPGTGKTALALAIAQELGSK 104
>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 433
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 12 ILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 44
+L G G GKTT + ++ + L ++ +K+V++V
Sbjct: 103 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135
>pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|B Chain B, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|C Chain C, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|D Chain D, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|E Chain E, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|F Chain F, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|G Chain G, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|H Chain H, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX3|A Chain A, Crystal Structure Of Flhf Complexed With GtpMG(2+)
pdb|3SYN|A Chain A, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|B Chain B, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|C Chain C, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|D Chain D, Crystal Structure Of Flhf In Complex With Its Activator
Length = 296
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 46
+ K I+ G G GKTT + ++A + E K++ + T
Sbjct: 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142
>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
Length = 430
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 12 ILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 44
+L G G GKTT + ++ + L ++ +K+V++V
Sbjct: 102 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 134
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDE 36
G+++L G PG GKT + IA+ L +
Sbjct: 63 GRAVLLAGPPGTGKTALALAIAQELGSK 90
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45
Y + G + G PG GKTT+ +A +L E RV ++D
Sbjct: 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKE-GYRVEVLD 48
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 6/41 (14%)
Query: 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45
LL+ G ++ VG+P VGK+T++ R+L+++ R ++ D
Sbjct: 239 LLNRGLRMVIVGKPNVGKSTLLN---RLLNED---RAIVTD 273
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 11 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI 50
S++ G PG GKTT+ IAR + + ++ + EI
Sbjct: 52 SMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEI 91
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 11 SILFVGRPGVGKTTVMREIAR 31
++L VGRP VGK+T+ ++ +
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVK 23
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,651,657
Number of Sequences: 62578
Number of extensions: 251159
Number of successful extensions: 1078
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1022
Number of HSP's gapped (non-prelim): 91
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)