BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027390
(224 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51281|YCF45_PORPU Uncharacterized protein ycf45 OS=Porphyra purpurea GN=ycf45 PE=3
SV=1
Length = 565
Score = 287 bits (735), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 138/214 (64%), Positives = 170/214 (79%), Gaps = 1/214 (0%)
Query: 1 MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSA 60
++ DLL G SIL +G+PGVGKTT +REIARVLSDE +KRVVI+DTSNEI GDGDIPH A
Sbjct: 115 IIRDLLEQGDSILLLGKPGVGKTTAVREIARVLSDEMEKRVVIIDTSNEIAGDGDIPHPA 174
Query: 61 IGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAH 120
IG ARRMQV +P LQH+VMIEAVENHMPEVII+DEIGTE EA A R+IAERGV L+GTAH
Sbjct: 175 IGRARRMQVAQPDLQHQVMIEAVENHMPEVIIIDEIGTELEALAARTIAERGVQLVGTAH 234
Query: 121 GEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYW 180
G +LE++IKNP L+DLIGG+ VTLGD+EA+ R QKSILERKA P F IE+ +R W
Sbjct: 235 GNYLESLIKNPTLADLIGGIQYVTLGDDEAKRRGTQKSILERKAAPAFQIAIEIHDRKAW 294
Query: 181 VTH-KTEKSVDMLLRGKTPLVEIRKRDDRFNVVV 213
+ H K E+++D +L+G P V+ R+ D +++
Sbjct: 295 IVHEKVEETIDQILQGHQPFVQKRQIQDNGRILI 328
>sp|P49540|YCF45_ODOSI Uncharacterized protein ycf45 OS=Odontella sinensis GN=ycf45 PE=3
SV=1
Length = 455
Score = 265 bits (676), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 129/204 (63%), Positives = 158/204 (77%), Gaps = 1/204 (0%)
Query: 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAI 61
V DLL +SIL +G+PGVGKTT++REIARVLSDE +KRVVIVDTSNEI GD DIPHSAI
Sbjct: 116 VRDLLESQQSILLLGKPGVGKTTIIREIARVLSDEMEKRVVIVDTSNEIAGDSDIPHSAI 175
Query: 62 GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHG 121
G ARRMQV LQH++MIEAVENHMP+VI++DEIGTE EA A R+IAE+GV L+GT HG
Sbjct: 176 GRARRMQVATTDLQHQIMIEAVENHMPQVIVIDEIGTELEALAARTIAEKGVQLVGTTHG 235
Query: 122 EWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWV 181
LEN+IKNP LSDLIGG+ +VTL D+EA+ R QKSI+ERKA P F IE+ + W
Sbjct: 236 NCLENLIKNPPLSDLIGGIQSVTLSDDEAKRRGTQKSIIERKAYPAFQIAIEINTENSWT 295
Query: 182 THK-TEKSVDMLLRGKTPLVEIRK 204
H+ + S+D+LLR ++R+
Sbjct: 296 IHEDIKSSIDLLLRKSFTGTQVRE 319
>sp|O19920|YCF45_CYACA Uncharacterized protein ycf45 OS=Cyanidium caldarium GN=ycf45 PE=3
SV=1
Length = 335
Score = 208 bits (529), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/204 (49%), Positives = 145/204 (71%), Gaps = 1/204 (0%)
Query: 1 MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSA 60
++ DL+ +S L +GRPG+GKT+ +REI+R+LS+E KRV+IVD++NEI G+G PH +
Sbjct: 115 IIRDLIESNQSTLLIGRPGIGKTSFIREISRILSNEIMKRVIIVDSANEISGEGCCPHIS 174
Query: 61 IGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAH 120
G ARRM+V + QH+VMIEA+ENH PE+II+DEIGTE E+ A SI++RG+ LIG+AH
Sbjct: 175 TGKARRMEVQSINSQHEVMIEAIENHTPEIIIIDEIGTEYESQAAISISQRGIRLIGSAH 234
Query: 121 GEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEM-RERHY 179
L N+ KNP L L+GG+++VTL D +A R+ +K+ILERK F IE+ ++R
Sbjct: 235 SSDLFNLAKNPTLCKLVGGIESVTLSDTQAILRKTKKTILERKGCSCFNATIEINKKRTV 294
Query: 180 WVTHKTEKSVDMLLRGKTPLVEIR 203
V E+S+D +L G+ +IR
Sbjct: 295 KVYTSVEQSIDAILEGRVNNSQIR 318
>sp|Q01367|SP3AA_BACSU Stage III sporulation protein AA OS=Bacillus subtilis (strain 168)
GN=spoIIIAA PE=4 SV=1
Length = 307
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 9/132 (6%)
Query: 11 SILFVGRPGVGKTTVMREIARVLSDEFQKRVV-----IVDTSNEIGGD-GDIPHSAIGTA 64
+ L +G P GKTT++R++AR LS +K ++ IVD +EI G IP G
Sbjct: 138 NTLIIGPPQTGKTTLLRDLAR-LSSTGKKNMLPVKTGIVDERSEIAGCLRGIPQHQFG-- 194
Query: 65 RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWL 124
+R+ V + + + ++ + + PEV+IVDEIG + A GV +I +AHG +
Sbjct: 195 QRIDVLDACPKAEGLMMMIRSMSPEVMIVDEIGRMEDTDALLEALHAGVSVIVSAHGWSI 254
Query: 125 ENIIKNPILSDL 136
+++K P L L
Sbjct: 255 SDLMKRPSLKRL 266
>sp|P53034|RFC2_DROME Replication factor C subunit 2 OS=Drosophila melanogaster GN=RfC4
PE=2 SV=1
Length = 331
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 11 SILFVGRPGVGKTTVMREIARV-LSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 69
+I+ G PGVGKTT ++ +AR+ L D +++ V+ ++ SNE G D+ + I + +V
Sbjct: 51 NIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERG--IDVVRNKIKMFAQQKV 108
Query: 70 PEPSLQHKVMIEAVENHMPE 89
P +HK++I + M E
Sbjct: 109 TLPRGRHKIVILDEADSMTE 128
>sp|Q550C8|LONM2_DICDI Lon protease homolog, mitochondrial 2 OS=Dictyostelium discoideum
GN=DDB_0217928 PE=3 SV=1
Length = 836
Score = 40.8 bits (94), Expect = 0.008, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 15/90 (16%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQ 68
GK IL VG PG GKT+V + IA L +F + +GG D+ S I RR
Sbjct: 384 GKVILLVGPPGTGKTSVGKSIANALGRQFHRI--------SVGGLSDV--SEIKGHRRTY 433
Query: 69 VPEPSLQHKVM--IEAVENHMPEVIIVDEI 96
V S+ K++ ++ V+ P VI++DEI
Sbjct: 434 V--ASMPGKIIQALKTVKTSNP-VILIDEI 460
>sp|Q6CNR9|LONM_KLULA Lon protease homolog, mitochondrial OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=PIM1 PE=3 SV=1
Length = 1111
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--IVDTSNEIGGD-----GDIPHSAI 61
GK I FVG PGVGKT++ + IAR L+ +F + V + D + EI G G +P I
Sbjct: 595 GKIICFVGPPGVGKTSIGKSIARSLNRQFFRFSVGGMTDVA-EIKGHRRTYIGALPGRVI 653
Query: 62 GTARRMQVPEP 72
++ Q P
Sbjct: 654 QALKKCQTQNP 664
>sp|P36775|LONM_YEAST Lon protease homolog, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PIM1 PE=1 SV=2
Length = 1133
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--IVDTSNEIGGD-----GDIPHSAI 61
GK I FVG PGVGKT++ + IAR L+ +F + V + D + EI G G +P +
Sbjct: 625 GKIICFVGPPGVGKTSIGKSIARALNRKFFRFSVGGMTDVA-EIKGHRRTYIGALPGRVV 683
Query: 62 GTARRMQVPEP 72
++ Q P
Sbjct: 684 QALKKCQTQNP 694
>sp|Q5PQY6|LONP2_DANRE Lon protease homolog 2, peroxisomal OS=Danio rerio GN=lonp2 PE=2
SV=1
Length = 840
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 39
G + FVG PGVGKT+V R IAR L EF +
Sbjct: 368 GPILCFVGPPGVGKTSVGRSIARTLGREFHR 398
>sp|Q6FPE6|LONM_CANGA Lon protease homolog, mitochondrial OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=PIM1 PE=3 SV=1
Length = 1026
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--IVDTSNEIGGD-----GDIPHSAI 61
GK I FVG PGVGKT++ + I+R L+ +F + V + D + EI G G +P I
Sbjct: 490 GKIICFVGPPGVGKTSIGKSISRALNRQFFRFSVGGMTDVA-EIKGHRRTYIGALPGRII 548
Query: 62 GTARRMQVPEP 72
++ Q P
Sbjct: 549 QALKKCQTQNP 559
>sp|Q6MTF4|LON_MYCMS Lon protease OS=Mycoplasma mycoides subsp. mycoides SC (strain PG1)
GN=lon PE=3 SV=1
Length = 796
Score = 38.1 bits (87), Expect = 0.044, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQK-RVVIVDTSNEIGGD-----GDIPHSAIG 62
G I FVG PGVGKT++ R IA L +F K + V +EI G G +P I
Sbjct: 369 GPIITFVGPPGVGKTSLARSIAEALGKKFVKVSLGGVKDESEIRGHRKTYVGSMPGRIIQ 428
Query: 63 TARRMQVPEP 72
+R +V P
Sbjct: 429 ALKRAKVKNP 438
>sp|P36776|LONM_HUMAN Lon protease homolog, mitochondrial OS=Homo sapiens GN=LONP1 PE=1
SV=2
Length = 959
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEF 37
GK + F G PGVGKT++ R IAR L+ E+
Sbjct: 516 GKILCFYGPPGVGKTSIARSIARALNREY 544
>sp|Q59HJ6|LONM_BOVIN Lon protease homolog, mitochondrial OS=Bos taurus GN=LONP1 PE=1
SV=1
Length = 961
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEF 37
GK + F G PGVGKT++ R IAR L+ E+
Sbjct: 517 GKILCFYGPPGVGKTSIARSIARALNREY 545
>sp|Q54YV4|LONM1_DICDI Lon protease homolog, mitochondrial 1 OS=Dictyostelium discoideum
GN=DDB_G0278063 PE=3 SV=3
Length = 956
Score = 38.1 bits (87), Expect = 0.055, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 25/95 (26%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--IVDTSNEIGGD-----GDIPHSAI 61
GK + F+G PG GKT++ + IA+ L EF + V + D S EI G G +P I
Sbjct: 504 GKILCFIGPPGTGKTSIAKSIAKALKKEFFRFSVGGLFDES-EIKGHRRTYVGSMPGKII 562
Query: 62 GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 96
+ Q P VI++DEI
Sbjct: 563 QALKITQTSNP-----------------VILIDEI 580
>sp|Q2TAF8|LONP2_XENLA Lon protease homolog 2, peroxisomal OS=Xenopus laevis GN=lonp2 PE=2
SV=1
Length = 856
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 39
G + FVG PGVGKT+V R IA+ L EF +
Sbjct: 372 GPILCFVGPPGVGKTSVGRSIAKTLGREFHR 402
>sp|F4IAE9|Y1591_ARATH ATPase family AAA domain-containing protein At1g05910
OS=Arabidopsis thaliana GN=At1g05910 PE=2 SV=1
Length = 1210
Score = 37.7 bits (86), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 29/133 (21%)
Query: 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 69
+ +L G PG GKT + R +A S QK S + D+ +G A R
Sbjct: 416 RGVLLCGPPGTGKTLIARALACAASKAGQK------VSFYMRKGADVLSKWVGEAER--- 466
Query: 70 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIK 129
Q K++ E + + P +I DEI G+ + ++ E + N I
Sbjct: 467 -----QLKLLFEEAQRNQPSIIFFDEID--------------GLAPVRSSKQEQIHNSIV 507
Query: 130 NPILSDLIGGVDT 142
+ +L+ L+ G+D+
Sbjct: 508 STLLA-LMDGLDS 519
>sp|A9B5N1|LON1_HERA2 Lon protease 1 OS=Herpetosiphon aurantiacus (strain ATCC 23779 /
DSM 785) GN=lon1 PE=3 SV=1
Length = 815
Score = 37.7 bits (86), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-IVDTSNEIGGD-----GDIPHSAIG 62
G + FVG PGVGKT++ R IA+ ++ EF + + V EI G G +P S I
Sbjct: 363 GAILCFVGPPGVGKTSLGRSIAKAMNREFVRLSLGGVHDEAEIRGHRRTYIGAMPGSLIQ 422
Query: 63 TARRMQVPEP 72
RR V P
Sbjct: 423 AIRRSGVNNP 432
>sp|P93648|LONM_MAIZE Lon protease homolog, mitochondrial OS=Zea mays GN=LON2 PE=1 SV=1
Length = 964
Score = 37.4 bits (85), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQ 68
GK I G PGVGKT++ R IAR L+ +F + V GG D+ + I RR
Sbjct: 448 GKIICLSGPPGVGKTSIGRSIARALNRQFYRFSV--------GGLADV--AEIKGHRRTY 497
Query: 69 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104
V + +++V P ++++DEI + H+
Sbjct: 498 VGAMPGKMVQCLKSVGTANP-LVLIDEIDKLGKGHS 532
>sp|B0TFI9|LON_HELMI Lon protease OS=Heliobacterium modesticaldum (strain ATCC 51547 /
Ice1) GN=lon PE=3 SV=1
Length = 813
Score = 37.4 bits (85), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEF 37
G I FVG PGVGKT++ R IAR L +F
Sbjct: 352 GPIICFVGPPGVGKTSLARSIARALERKF 380
>sp|Q3MIB4|LONP2_RAT Lon protease homolog 2, peroxisomal OS=Rattus norvegicus GN=Lonp2
PE=1 SV=2
Length = 852
Score = 37.4 bits (85), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 39
G + FVG PGVGKT+V R +A+ L EF +
Sbjct: 368 GPILCFVGPPGVGKTSVGRSVAKTLGREFHR 398
>sp|Q7S8C4|LONM_NEUCR Lon protease homolog, mitochondrial OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=pim1 PE=3 SV=1
Length = 1107
Score = 37.4 bits (85), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 19/143 (13%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQ 68
GK + FVG PGVGKT++ + IAR L ++ + V GG D+ + I RR
Sbjct: 587 GKILCFVGPPGVGKTSIGKSIARALGRQYYRFSV--------GGLTDV--AEIKGHRRTY 636
Query: 69 VPEPSLQHKVM--IEAVENHMPEVII--VDEIGTEAEAHACRSIAERGVMLIGTAHGEWL 124
V +L +V+ ++ + P ++I +D+IG + ++ E +L +G +L
Sbjct: 637 V--GALPGRVIQALKKCKTENPLILIDEIDKIGRGYQGDPSSALLE---LLDPEQNGSFL 691
Query: 125 ENIIKNPILSDLIGGVDTVTLGD 147
++ + P+ + V T L D
Sbjct: 692 DHYLDVPVDLSKVLFVCTANLTD 714
>sp|Q3SX23|LONP2_BOVIN Lon protease homolog 2, peroxisomal OS=Bos taurus GN=LONP2 PE=2
SV=1
Length = 852
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 39
G + FVG PGVGKT+V R +A+ L EF +
Sbjct: 368 GPILCFVGPPGVGKTSVGRSVAKTLGREFHR 398
>sp|Q9DBN5|LONP2_MOUSE Lon protease homolog 2, peroxisomal OS=Mus musculus GN=Lonp2 PE=2
SV=1
Length = 852
Score = 37.4 bits (85), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 39
G + FVG PGVGKT+V R +A+ L EF +
Sbjct: 368 GPILCFVGPPGVGKTSVGRSVAKTLGREFHR 398
>sp|Q86WA8|LONP2_HUMAN Lon protease homolog 2, peroxisomal OS=Homo sapiens GN=LONP2 PE=1
SV=1
Length = 852
Score = 37.4 bits (85), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 39
G + FVG PGVGKT+V R +A+ L EF +
Sbjct: 368 GPILCFVGPPGVGKTSVGRSVAKTLGREFHR 398
>sp|P40340|TBP7_YEAST Tat-binding homolog 7 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YTA7 PE=1 SV=2
Length = 1379
Score = 37.4 bits (85), Expect = 0.092, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 69
+ +LF G PG GKT + R +A S + +K + DI +G A R
Sbjct: 448 RGVLFHGPPGTGKTLMARALAASCSSDERKITFFMRKG------ADILSKWVGEAER--- 498
Query: 70 PEPSLQHKVMIEAVENHMPEVIIVDEI 96
Q +++ E + H P +I DEI
Sbjct: 499 -----QLRLLFEEAKKHQPSIIFFDEI 520
>sp|Q22111|MMAA1_CAEEL Methylmalonic aciduria type A homolog, mitochondrial
OS=Caenorhabditis elegans GN=mmaa-1 PE=3 SV=2
Length = 399
Score = 37.0 bits (84), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 34/165 (20%)
Query: 16 GRPGVGKTTVMREIARVLSDEFQKRVVIVD---TSNEIGGDGDIPHSAIGTARRMQVPEP 72
G PGVGK++ + + L++ K+V ++ TS GG S +G RMQ E
Sbjct: 131 GSPGVGKSSFIEALGAELTENRGKKVAVLTIDPTSAMTGG------SVLGDLTRMQ--EL 182
Query: 73 SLQHKVMI-----------------EAV---ENHMPEVIIVDEIGTEAEAHACRSIAERG 112
S K I EAV E +++I++ +G + + +
Sbjct: 183 SRNPKAYIRQSPTSGSLGGVTRGIHEAVILCEGAGYDIVIIETVGVGQSETSVSDMCDMM 242
Query: 113 VMLIGTAHGEWLENIIKNPI-LSDLIGGVDTVTLGDEEARARRCQ 156
+L+ AHG+ L+ + + + +SDL+ V T GD +A+A+ Q
Sbjct: 243 CLLLSPAHGDELQGVKRGIMEMSDLL--VVTKDDGDLKAKAKMTQ 285
>sp|A8XGZ9|MMAA1_CAEBR Methylmalonic aciduria type A homolog, mitochondrial
OS=Caenorhabditis briggsae GN=mmaa-1 PE=3 SV=2
Length = 412
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 39/178 (21%)
Query: 8 YGK-SILF----VGRPGVGKTTVMREIARVLSDEFQKRVVIVD---TSNEIGGDGDIPHS 59
YG+ S++F G PGVGK++ + + L++ K+V ++ TS GG S
Sbjct: 119 YGRDSMIFRVGISGSPGVGKSSFIEALGAELTENRGKKVAVLTIDPTSAMTGG------S 172
Query: 60 AIGTARRMQVPEPSLQHKVMI-----------------EAV---ENHMPEVIIVDEIGTE 99
+G RMQ E S + I EAV E +++I++ +G
Sbjct: 173 VLGDLTRMQ--ELSRNPRAYIRQSPTSGSLGGVTRGIHEAVILCEGAGYDIVIIETVGVG 230
Query: 100 AEAHACRSIAERGVMLIGTAHGEWLENIIKNPI-LSDLIGGVDTVTLGDEEARARRCQ 156
+ + + +L+ AHG+ L+ + + + +SDL+ V T GD +A+A+ Q
Sbjct: 231 QSETSVSDMCDMMCLLLSPAHGDELQGVKRGIMEMSDLL--VVTKDDGDLQAKAKMTQ 286
>sp|P93655|LONM1_ARATH Lon protease homolog 1, mitochondrial OS=Arabidopsis thaliana
GN=LON1 PE=1 SV=2
Length = 940
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQ 68
GK I G PGVGKT++ R IAR L+ +F + V GG D+ + I RR
Sbjct: 457 GKIICLSGPPGVGKTSIGRSIARALNRKFFRFSV--------GGLADV--AEIKGHRRTY 506
Query: 69 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104
V + +++V P ++++DEI HA
Sbjct: 507 VGAMPGKMVQCLKSVGTANP-LVLIDEIDKLGRGHA 541
>sp|B8J198|LON_DESDA Lon protease OS=Desulfovibrio desulfuricans (strain ATCC 27774 /
DSM 6949) GN=lon PE=3 SV=1
Length = 880
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 39
G + F G PGVGKT++ R +AR L +FQ+
Sbjct: 397 GPILCFAGPPGVGKTSLGRSVARALGRKFQR 427
>sp|Q09769|LONM_SCHPO Lon protease homolog, mitochondrial OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pim1 PE=3 SV=1
Length = 1067
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 25/102 (24%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--IVDTSNEIGGD-----GDIPHSAI 61
GK + VG PGVGKT+V + IA L+ EF + V + D + EI G G +P +
Sbjct: 571 GKIMCLVGPPGVGKTSVGKSIASALNREFFRFSVGGLTDVA-EIKGHRRTYIGAMPGKIV 629
Query: 62 GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 103
+++Q P +I++DEI ++H
Sbjct: 630 QALKKVQTENP-----------------LILIDEIDKVGKSH 654
>sp|Q6C0B5|LONM_YARLI Lon protease homolog, mitochondrial OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=PIM1 PE=3 SV=1
Length = 1177
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQK-RVVIVDTSNEIGGD-----GDIPHSAIG 62
GK +L G PGVGKT++ + IA+ L+ +F + V + ++E+ G G IP +
Sbjct: 650 GKILLLQGPPGVGKTSIGKSIAKALNRQFYRFSVGGTNDASEVKGHRRTYVGAIPGRLVQ 709
Query: 63 TARRMQVPEP 72
++ Q P
Sbjct: 710 ALKQTQTENP 719
>sp|Q8CGK3|LONM_MOUSE Lon protease homolog, mitochondrial OS=Mus musculus GN=Lonp1 PE=1
SV=2
Length = 949
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEF 37
GK + F G PGVGKT++ R IAR L E+
Sbjct: 505 GKILCFHGPPGVGKTSIARSIARALGREY 533
>sp|Q924S5|LONM_RAT Lon protease homolog, mitochondrial OS=Rattus norvegicus GN=Lonp1
PE=2 SV=1
Length = 950
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEF 37
GK + F G PGVGKT++ R IAR L E+
Sbjct: 506 GKILCFHGPPGVGKTSIARSIARALGREY 534
>sp|Q69UZ3|LONM_ORYSJ Lon protease homolog, mitochondrial OS=Oryza sativa subsp. japonica
GN=Os07g0689300 PE=2 SV=1
Length = 1002
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQ 68
GK I G PGVGKT++ R IAR L+ +F + V GG D+ + I RR
Sbjct: 461 GKIICLSGPPGVGKTSIGRSIARALNRKFYRFSV--------GGLADV--AEIKGHRRTY 510
Query: 69 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104
V + +++V P ++++DEI H+
Sbjct: 511 VGAMPGKMVQCLKSVGTANP-LVLIDEIDKLGRGHS 545
>sp|A2YQ56|LONM_ORYSI Lon protease homolog, mitochondrial OS=Oryza sativa subsp. indica
GN=OsI_27415 PE=2 SV=1
Length = 1002
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQ 68
GK I G PGVGKT++ R IAR L+ +F + V GG D+ + I RR
Sbjct: 461 GKIICLSGPPGVGKTSIGRSIARALNRKFYRFSV--------GGLADV--AEIKGHRRTY 510
Query: 69 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104
V + +++V P ++++DEI H+
Sbjct: 511 VGAMPGKMVQCLKSVGTANP-LVLIDEIDKLGRGHS 545
>sp|Q9WXP3|NTPTH_THEMA Nucleoside-triphosphatase THEP1 OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_0036 PE=3
SV=1
Length = 174
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 12 ILFVGRPGVGKTTVMREIARVLSD----------EFQKR----VVIVDTSNEIGGDGDIP 57
IL GRPGVGKTT++++++R+L + E +KR ++ +D I D+P
Sbjct: 3 ILITGRPGVGKTTLIKKLSRLLQNAGGFYTEEMREGEKRIGFKIITLDGEEGILARTDLP 62
Query: 58 HSAIGTARRMQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGT-EAEAHACRSIAER 111
+ V L+ + + ++E E +IIVDEIG E + R + E+
Sbjct: 63 SPY--RVGKYYVNLKDLEE-IGVRSLERAFQEKDLIIVDEIGKMELLSRKFREVVEK 116
>sp|Q6C0L7|LONP2_YARLI Lon protease homolog 2, peroxisomal OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=YALI0F23595g PE=3 SV=1
Length = 952
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 12 ILFVGRPGVGKTTVMREIARVLSDEFQK 39
+L VG PGVGKT++ + +AR L +FQ+
Sbjct: 489 LLLVGPPGVGKTSLAKSVARALGRKFQR 516
>sp|Q5R6M5|LONP2_PONAB Lon protease homolog 2, peroxisomal OS=Pongo abelii GN=LONP2 PE=2
SV=1
Length = 852
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 39
G + FVG PGVGKT+V R +A+ L EF +
Sbjct: 368 GPILCFVGPPGVGKTSVGRLVAKTLGREFHR 398
>sp|Q7KUT2|LONM_DROME Lon protease homolog, mitochondrial OS=Drosophila melanogaster
GN=CG8798 PE=2 SV=1
Length = 1024
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEF 37
GK + F G PGVGKT++ + IAR L+ E+
Sbjct: 557 GKILCFHGPPGVGKTSIAKSIARALNREY 585
>sp|Q754Q9|LONM_ASHGO Lon protease homolog, mitochondrial OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PIM1
PE=3 SV=2
Length = 1058
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--IVDTSNEIGGD-----GDIPHSAI 61
GK I VG PGVGKT++ + I+R L+ F + V + D S EI G G +P I
Sbjct: 557 GKIICLVGPPGVGKTSIGQSISRALNRTFFRFSVGGMSDVS-EIKGHRRTYIGALPGRLI 615
Query: 62 GTARRMQVPEP 72
+R Q P
Sbjct: 616 HALKRCQTENP 626
>sp|Q4A6N6|RUVB_MYCS5 Holliday junction ATP-dependent DNA helicase RuvB OS=Mycoplasma
synoviae (strain 53) GN=ruvB PE=3 SV=2
Length = 316
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 12 ILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIGGDGDIPHSAIGTARRMQVP 70
ILF G PG+GKT+ +A ++++E + ++ + SN E D S I + +
Sbjct: 39 ILFYGMPGMGKTS----LAGIIANETKNKIHFIQGSNLEKKSDLINILSVINENDIVFID 94
Query: 71 EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR 106
E +K +IE + + M + + IGTE+ A A R
Sbjct: 95 EIHSINKNIIEFLYSAMEDFVFDLIIGTESNAKALR 130
>sp|Q54PJ1|PRS10_DICDI 26S protease regulatory subunit 10B OS=Dictyostelium discoideum
GN=psmC6 PE=1 SV=1
Length = 393
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 40/111 (36%), Gaps = 29/111 (26%)
Query: 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 69
K +L G PG GKT + R IA L F K V IG + G AR
Sbjct: 172 KGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYAR---- 227
Query: 70 PEPSLQHKVMIEAVENHMPEVIIVDEI----------GTEAEAHACRSIAE 110
+H P VI +DEI GT A+ R++ E
Sbjct: 228 ---------------DHQPCVIFMDEIDAIGGRRFSEGTSADREIQRTLME 263
>sp|Q1MS21|LON_LAWIP Lon protease OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=lon
PE=3 SV=1
Length = 830
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 39
G + F G PGVGKT++ R IA+ L +FQ+
Sbjct: 390 GPILCFAGPPGVGKTSLGRSIAKSLGRKFQR 420
>sp|Q5AZT7|LONM_EMENI Lon protease homolog, mitochondrial OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=pim1 PE=3 SV=1
Length = 1104
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--IVDTSNEIGGD-----GDIPHSAI 61
GK + VG PGVGKT++ + IAR L+ ++ + V + D + EI G G +P I
Sbjct: 597 GKILCLVGPPGVGKTSIGKSIARALNRQYYRFSVGGLTDVA-EIKGHRRTYVGALPGRII 655
Query: 62 GTARRMQVPEP 72
++ Q P
Sbjct: 656 QALKKCQTENP 666
>sp|Q6CWS4|LONP2_KLULA Lon protease homolog 2, peroxisomal OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=KLLA0B01892g PE=3 SV=1
Length = 1003
Score = 35.4 bits (80), Expect = 0.31, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 12 ILFVGRPGVGKTTVMREIARVLSDEFQK 39
+L VG PGVGKT++ + +A VL +FQ+
Sbjct: 516 LLLVGPPGVGKTSIAKSVADVLGRKFQR 543
>sp|A2QCJ2|LONM_ASPNC Lon protease homolog, mitochondrial OS=Aspergillus niger (strain
CBS 513.88 / FGSC A1513) GN=pim1 PE=3 SV=1
Length = 1113
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--IVDTSNEIGGD-----GDIPHSAI 61
GK + VG PGVGKT++ + IAR L+ ++ + V + D + EI G G +P I
Sbjct: 602 GKILCLVGPPGVGKTSIGKSIARALNRQYYRFSVGGLTDVA-EIKGHRRTYVGALPGRII 660
Query: 62 GTARRMQVPEP 72
++ Q P
Sbjct: 661 QALKKCQTENP 671
>sp|Q3A334|LON2_PELCD Lon protease 2 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd
1) GN=lon2 PE=3 SV=1
Length = 796
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEF 37
G + FVG PGVGKT++ R IAR L +F
Sbjct: 349 GPILCFVGPPGVGKTSLGRSIARSLGRKF 377
>sp|Q72JM6|LON2_THET2 Lon protease 2 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163
/ DSM 7039) GN=lon2 PE=3 SV=1
Length = 804
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF 37
D ++ G +LFVG PGVGKT++ + IA L ++
Sbjct: 350 DEVNKGPILLFVGPPGVGKTSIAKSIAEALGRKY 383
>sp|Q755E4|LONP2_ASHGO Lon protease homolog 2, peroxisomal OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=AFL121W
PE=3 SV=2
Length = 1004
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 12 ILFVGRPGVGKTTVMREIARVLSDEFQK 39
+L VG PGVGKT+V + +A VL FQ+
Sbjct: 515 LLLVGPPGVGKTSVAKSVADVLGRRFQR 542
>sp|B3E7K2|LON_GEOLS Lon protease OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278
/ SZ) GN=lon PE=3 SV=1
Length = 816
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 9 GKSILFVGRPGVGKTTVMREIARVLSDEF 37
G + FVG PGVGKT++ + IAR L+ +F
Sbjct: 365 GPILCFVGPPGVGKTSLGKSIARALNRKF 393
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,080,641
Number of Sequences: 539616
Number of extensions: 3377481
Number of successful extensions: 19829
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 19549
Number of HSP's gapped (non-prelim): 447
length of query: 224
length of database: 191,569,459
effective HSP length: 113
effective length of query: 111
effective length of database: 130,592,851
effective search space: 14495806461
effective search space used: 14495806461
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)