Query 027390
Match_columns 224
No_of_seqs 270 out of 2981
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 15:17:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rlf_A Maltose/maltodextrin im 100.0 2.6E-32 8.9E-37 241.8 14.6 158 3-163 23-233 (381)
2 3tui_C Methionine import ATP-b 100.0 2.6E-32 9E-37 240.5 13.6 150 3-155 48-255 (366)
3 3gfo_A Cobalt import ATP-bindi 100.0 3.9E-32 1.3E-36 231.8 12.5 148 3-153 28-233 (275)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 8.4E-32 2.9E-36 237.0 13.3 152 3-157 24-232 (359)
5 1z47_A CYSA, putative ABC-tran 100.0 2.1E-31 7.2E-36 234.3 14.1 151 3-156 35-238 (355)
6 2olj_A Amino acid ABC transpor 100.0 3.7E-31 1.2E-35 224.4 14.3 148 3-153 44-248 (263)
7 2it1_A 362AA long hypothetical 100.0 3.2E-31 1.1E-35 233.8 14.4 158 3-163 23-233 (362)
8 2yyz_A Sugar ABC transporter, 100.0 2.8E-31 9.5E-36 234.0 13.5 157 4-163 24-233 (359)
9 1vpl_A ABC transporter, ATP-bi 100.0 5.7E-31 1.9E-35 222.4 14.2 147 3-152 35-234 (256)
10 1g29_1 MALK, maltose transport 100.0 7.2E-31 2.5E-35 232.5 15.1 158 3-163 23-239 (372)
11 1oxx_K GLCV, glucose, ABC tran 100.0 4.4E-31 1.5E-35 232.4 13.3 151 3-156 25-233 (353)
12 1v43_A Sugar-binding transport 100.0 4.1E-31 1.4E-35 233.9 12.8 158 3-163 31-241 (372)
13 4g1u_C Hemin import ATP-bindin 100.0 8.2E-31 2.8E-35 222.6 14.1 147 3-152 31-236 (266)
14 3d31_A Sulfate/molybdate ABC t 100.0 9.8E-31 3.3E-35 229.7 14.6 163 3-168 20-233 (348)
15 3tif_A Uncharacterized ABC tra 100.0 5E-31 1.7E-35 220.1 12.0 142 3-148 25-229 (235)
16 1b0u_A Histidine permease; ABC 100.0 9.7E-31 3.3E-35 221.7 13.8 148 3-153 26-242 (262)
17 2pcj_A ABC transporter, lipopr 100.0 9.1E-31 3.1E-35 217.0 12.5 140 3-146 24-221 (224)
18 1ji0_A ABC transporter; ATP bi 100.0 1.7E-30 5.7E-35 217.5 13.4 147 3-152 26-227 (240)
19 1g6h_A High-affinity branched- 100.0 1.4E-30 4.9E-35 220.0 12.3 145 3-150 27-239 (257)
20 2nq2_C Hypothetical ABC transp 100.0 2.8E-30 9.5E-35 217.8 14.1 146 3-152 25-216 (253)
21 2onk_A Molybdate/tungstate ABC 100.0 5E-30 1.7E-34 214.7 13.5 147 3-153 19-216 (240)
22 2yz2_A Putative ABC transporte 100.0 9.6E-30 3.3E-34 216.0 13.3 147 3-152 27-226 (266)
23 2qi9_C Vitamin B12 import ATP- 100.0 1.1E-29 3.7E-34 213.8 12.4 146 3-152 20-221 (249)
24 2ihy_A ABC transporter, ATP-bi 100.0 4.9E-30 1.7E-34 219.2 8.9 147 3-152 41-251 (279)
25 2ff7_A Alpha-hemolysin translo 100.0 2E-29 6.9E-34 211.8 12.4 144 3-152 29-231 (247)
26 1mv5_A LMRA, multidrug resista 100.0 3.9E-29 1.3E-33 209.5 13.4 146 3-153 22-226 (243)
27 2pze_A Cystic fibrosis transme 100.0 6.7E-29 2.3E-33 206.4 14.6 145 3-152 28-217 (229)
28 2ixe_A Antigen peptide transpo 100.0 4.3E-29 1.5E-33 212.5 12.3 147 3-153 39-245 (271)
29 1sgw_A Putative ABC transporte 100.0 3.6E-29 1.2E-33 206.1 10.8 130 3-133 29-204 (214)
30 2d2e_A SUFC protein; ABC-ATPas 100.0 4.1E-29 1.4E-33 210.3 11.2 144 3-149 23-229 (250)
31 2cbz_A Multidrug resistance-as 100.0 1.7E-28 5.8E-33 205.0 14.5 147 3-153 25-217 (237)
32 3nh6_A ATP-binding cassette SU 100.0 9.4E-29 3.2E-33 213.7 11.8 145 3-153 74-277 (306)
33 2ghi_A Transport protein; mult 100.0 2.3E-28 7.8E-33 206.9 12.8 145 3-153 40-242 (260)
34 2bbs_A Cystic fibrosis transme 100.0 5.8E-28 2E-32 207.4 15.4 145 3-152 58-246 (290)
35 2zu0_C Probable ATP-dependent 100.0 1.4E-28 4.8E-33 208.9 11.4 146 3-151 40-252 (267)
36 3gd7_A Fusion complex of cysti 100.0 1.1E-28 3.6E-33 219.7 10.3 154 4-163 42-252 (390)
37 2pjz_A Hypothetical protein ST 99.9 1.4E-27 4.9E-32 202.3 12.8 144 4-152 26-214 (263)
38 3j16_B RLI1P; ribosome recycli 99.9 3.1E-27 1.1E-31 220.8 12.3 148 7-155 376-561 (608)
39 1yqt_A RNAse L inhibitor; ATP- 99.9 1.2E-26 4.1E-31 214.5 11.7 146 5-152 308-492 (538)
40 3ozx_A RNAse L inhibitor; ATP 99.9 1.1E-26 3.8E-31 214.6 11.5 129 5-134 290-458 (538)
41 3bk7_A ABC transporter ATP-bin 99.9 2.7E-26 9.3E-31 214.6 14.1 147 5-153 378-563 (607)
42 1yqt_A RNAse L inhibitor; ATP- 99.9 2.9E-26 1E-30 211.8 13.8 129 5-134 43-230 (538)
43 3qf4_B Uncharacterized ABC tra 99.9 3.9E-26 1.3E-30 213.4 13.7 144 4-153 376-578 (598)
44 4a82_A Cystic fibrosis transme 99.9 3E-26 1E-30 213.4 12.3 144 4-153 362-564 (578)
45 3b5x_A Lipid A export ATP-bind 99.9 7.4E-26 2.5E-30 210.9 14.5 146 3-153 363-567 (582)
46 3bk7_A ABC transporter ATP-bin 99.9 7.2E-26 2.5E-30 211.7 14.1 129 5-134 113-300 (607)
47 3qf4_A ABC transporter, ATP-bi 99.9 7E-26 2.4E-30 211.3 13.1 145 4-153 364-566 (587)
48 3b60_A Lipid A export ATP-bind 99.9 6.1E-26 2.1E-30 211.5 12.6 145 4-153 364-567 (582)
49 3ozx_A RNAse L inhibitor; ATP 99.9 6.5E-26 2.2E-30 209.4 10.4 128 5-134 21-209 (538)
50 2yl4_A ATP-binding cassette SU 99.9 5.6E-26 1.9E-30 212.2 9.9 144 4-152 365-569 (595)
51 3j16_B RLI1P; ribosome recycli 99.9 1E-25 3.5E-30 210.6 10.5 129 5-134 99-293 (608)
52 3ux8_A Excinuclease ABC, A sub 99.9 3.6E-24 1.2E-28 202.4 12.9 82 70-153 203-298 (670)
53 2iw3_A Elongation factor 3A; a 99.9 3.5E-23 1.2E-27 201.0 15.4 148 3-152 455-634 (986)
54 2iw3_A Elongation factor 3A; a 99.9 5.2E-24 1.8E-28 206.7 9.5 75 70-146 902-980 (986)
55 3g5u_A MCG1178, multidrug resi 99.9 8.5E-24 2.9E-28 211.9 11.1 147 3-153 1053-1258(1284)
56 3g5u_A MCG1178, multidrug resi 99.9 1.4E-23 4.9E-28 210.3 10.9 145 4-153 411-613 (1284)
57 3ux8_A Excinuclease ABC, A sub 99.9 2E-23 7E-28 197.3 10.5 81 70-152 544-639 (670)
58 4gp7_A Metallophosphoesterase; 99.9 2.4E-24 8E-29 170.9 3.4 116 3-128 3-165 (171)
59 4f4c_A Multidrug resistance pr 99.9 5.2E-23 1.8E-27 206.7 12.5 147 3-153 1099-1304(1321)
60 4f4c_A Multidrug resistance pr 99.9 2.1E-22 7E-27 202.4 12.6 145 4-152 439-640 (1321)
61 2npi_A Protein CLP1; CLP1-PCF1 99.9 6.4E-22 2.2E-26 179.6 8.4 145 4-151 133-336 (460)
62 3pih_A Uvrabc system protein A 99.9 5.2E-21 1.8E-25 185.2 14.8 82 70-153 806-902 (916)
63 3b85_A Phosphate starvation-in 99.8 1.2E-22 4.1E-27 166.4 0.6 118 4-126 17-162 (208)
64 2vf7_A UVRA2, excinuclease ABC 99.8 4.8E-21 1.6E-25 184.1 9.7 81 70-152 731-826 (842)
65 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 1.5E-20 5E-25 166.1 10.1 71 70-143 280-363 (365)
66 4aby_A DNA repair protein RECN 99.8 1.4E-20 4.7E-25 167.8 9.7 63 70-134 296-367 (415)
67 2pt7_A CAG-ALFA; ATPase, prote 99.8 9.3E-21 3.2E-25 165.2 8.2 122 3-134 165-286 (330)
68 2r6f_A Excinuclease ABC subuni 99.8 5.8E-20 2E-24 177.6 12.5 82 70-153 846-942 (972)
69 1ye8_A Protein THEP1, hypothet 99.8 1.8E-20 6.2E-25 149.8 7.4 121 11-131 2-152 (178)
70 2ygr_A Uvrabc system protein A 99.8 5.9E-20 2E-24 178.1 11.7 82 70-153 864-960 (993)
71 1tf7_A KAIC; homohexamer, hexa 99.8 4.4E-20 1.5E-24 170.0 6.8 168 3-183 275-481 (525)
72 2eyu_A Twitching motility prot 99.8 9.3E-19 3.2E-23 147.9 8.7 119 6-133 22-143 (261)
73 2ehv_A Hypothetical protein PH 99.8 9.8E-19 3.3E-23 144.6 8.6 130 4-134 25-204 (251)
74 3jvv_A Twitching mobility prot 99.7 1.3E-18 4.5E-23 153.1 8.1 121 5-134 119-242 (356)
75 4a74_A DNA repair and recombin 99.7 6.4E-18 2.2E-22 138.0 9.8 128 4-134 20-196 (231)
76 2w0m_A SSO2452; RECA, SSPF, un 99.7 5.5E-17 1.9E-21 132.3 11.1 129 5-134 19-188 (235)
77 1tq4_A IIGP1, interferon-induc 99.7 5.2E-19 1.8E-23 158.3 -1.3 125 11-136 71-251 (413)
78 1e69_A Chromosome segregation 99.7 1.8E-16 6.2E-21 137.3 12.1 72 70-144 220-304 (322)
79 3thx_A DNA mismatch repair pro 99.7 4.6E-17 1.6E-21 158.2 8.8 118 5-133 658-795 (934)
80 3b9q_A Chloroplast SRP recepto 99.7 7.8E-17 2.7E-21 138.8 9.2 115 5-121 96-256 (302)
81 1znw_A Guanylate kinase, GMP k 99.7 3E-19 1E-23 145.3 -5.8 52 83-134 137-200 (207)
82 2og2_A Putative signal recogni 99.7 3.1E-16 1.1E-20 138.0 10.3 115 5-121 153-313 (359)
83 1cr0_A DNA primase/helicase; R 99.6 4.7E-16 1.6E-20 132.7 10.3 129 5-134 31-231 (296)
84 2o8b_B DNA mismatch repair pro 99.6 1.6E-16 5.3E-21 156.0 6.8 121 8-133 788-923 (1022)
85 3qkt_A DNA double-strand break 99.6 6.6E-16 2.3E-20 134.7 9.9 64 70-134 249-325 (339)
86 1ewq_A DNA mismatch repair pro 99.6 3.2E-16 1.1E-20 149.7 6.8 114 9-126 576-702 (765)
87 3thx_B DNA mismatch repair pro 99.6 4.2E-16 1.4E-20 151.2 7.6 119 5-131 669-804 (918)
88 2ewv_A Twitching motility prot 99.6 5.7E-16 2E-20 137.0 6.7 120 5-133 132-254 (372)
89 2cvh_A DNA repair and recombin 99.6 8.6E-15 3E-19 118.6 13.1 121 5-134 16-181 (220)
90 1pzn_A RAD51, DNA repair and r 99.6 1.7E-14 5.9E-19 126.4 12.1 117 5-126 127-290 (349)
91 3aez_A Pantothenate kinase; tr 99.6 8.2E-17 2.8E-21 139.3 -3.4 119 5-124 86-230 (312)
92 1tf7_A KAIC; homohexamer, hexa 99.5 2.9E-14 9.8E-19 131.2 12.3 129 5-134 35-206 (525)
93 1wb9_A DNA mismatch repair pro 99.5 3.7E-15 1.3E-19 143.0 6.3 121 7-132 605-739 (800)
94 3sop_A Neuronal-specific septi 99.5 1.2E-15 4E-20 129.4 1.1 108 11-123 4-151 (270)
95 1z6g_A Guanylate kinase; struc 99.5 2.6E-16 9E-21 129.1 -3.3 126 3-133 17-205 (218)
96 1n0w_A DNA repair protein RAD5 99.5 1.5E-13 5.1E-18 112.9 12.3 118 4-126 19-178 (243)
97 1nlf_A Regulatory protein REPA 99.5 4.9E-14 1.7E-18 119.3 9.4 118 5-125 26-184 (279)
98 2v9p_A Replication protein E1; 99.5 4E-16 1.4E-20 134.4 -4.6 125 4-151 121-264 (305)
99 3ec2_A DNA replication protein 99.5 1.6E-14 5.3E-19 114.4 4.8 103 5-123 34-144 (180)
100 1rj9_A FTSY, signal recognitio 99.5 1.5E-13 5E-18 118.4 11.1 114 8-123 101-259 (304)
101 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 8.9E-14 3.1E-18 107.7 8.7 66 68-134 56-134 (148)
102 2i3b_A HCR-ntpase, human cance 99.5 2.4E-15 8.3E-20 121.1 -1.3 26 9-34 1-26 (189)
103 2kjq_A DNAA-related protein; s 99.5 8.9E-14 3E-18 107.7 6.9 83 8-121 35-124 (149)
104 2gza_A Type IV secretion syste 99.5 1.6E-13 5.6E-18 120.7 9.3 127 4-134 170-298 (361)
105 2jeo_A Uridine-cytidine kinase 99.4 1.1E-14 3.7E-19 121.2 0.7 115 3-122 19-165 (245)
106 2obl_A ESCN; ATPase, hydrolase 99.4 1.6E-14 5.5E-19 126.6 1.7 130 5-149 67-251 (347)
107 2dpy_A FLII, flagellum-specifi 99.4 1.7E-14 6E-19 130.0 0.8 129 5-148 153-339 (438)
108 3pih_A Uvrabc system protein A 99.4 2.4E-13 8.3E-18 131.8 7.5 82 70-153 465-560 (916)
109 3lda_A DNA repair protein RAD5 99.4 6.8E-12 2.3E-16 111.8 12.8 113 5-122 174-328 (400)
110 1s96_A Guanylate kinase, GMP k 99.3 2.8E-12 9.7E-17 105.4 8.9 116 5-127 12-145 (219)
111 2ygr_A Uvrabc system protein A 99.3 2.2E-12 7.6E-17 125.3 7.6 82 70-153 522-617 (993)
112 2r6f_A Excinuclease ABC subuni 99.3 2.4E-12 8.2E-17 124.7 7.1 80 71-152 506-599 (972)
113 1lw7_A Transcriptional regulat 99.3 3.7E-13 1.3E-17 118.3 1.2 128 2-132 161-338 (365)
114 3asz_A Uridine kinase; cytidin 99.3 3.4E-15 1.2E-19 120.9 -11.2 113 6-122 3-161 (211)
115 3szr_A Interferon-induced GTP- 99.3 1.5E-13 5.2E-18 128.5 -3.8 31 11-41 47-77 (608)
116 2vf7_A UVRA2, excinuclease ABC 99.2 5.7E-12 2E-16 121.3 6.7 80 71-152 381-474 (842)
117 2dr3_A UPF0273 protein PH0284; 99.2 1.2E-10 4.2E-15 95.4 12.9 130 4-134 18-193 (247)
118 3e70_C DPA, signal recognition 99.2 3.1E-11 1.1E-15 104.9 8.7 115 7-122 127-279 (328)
119 4ad8_A DNA repair protein RECN 99.2 2.7E-11 9.3E-16 111.1 6.9 62 71-134 399-469 (517)
120 1vma_A Cell division protein F 99.2 2.5E-11 8.5E-16 104.6 5.8 89 6-98 101-197 (306)
121 2oap_1 GSPE-2, type II secreti 99.1 9.1E-11 3.1E-15 107.6 9.3 115 3-123 254-368 (511)
122 2qnr_A Septin-2, protein NEDD5 99.1 1.6E-12 5.4E-17 111.7 -2.4 50 70-123 114-168 (301)
123 2px0_A Flagellar biosynthesis 99.1 1.4E-10 4.9E-15 99.3 8.8 120 7-133 103-237 (296)
124 1ls1_A Signal recognition part 99.1 1.6E-10 5.6E-15 98.8 8.6 97 8-108 97-202 (295)
125 2zr9_A Protein RECA, recombina 99.1 4.6E-10 1.6E-14 98.3 11.4 109 5-123 57-199 (349)
126 1p9r_A General secretion pathw 99.1 5.8E-10 2E-14 99.8 12.3 109 6-123 164-272 (418)
127 2qag_C Septin-7; cell cycle, c 99.0 3.5E-11 1.2E-15 107.7 1.4 49 73-122 122-177 (418)
128 2bdt_A BH3686; alpha-beta prot 99.0 9.5E-13 3.3E-17 104.7 -8.0 31 9-43 2-32 (189)
129 3hr8_A Protein RECA; alpha and 99.0 6.2E-10 2.1E-14 97.7 9.0 162 5-178 57-269 (356)
130 1htw_A HI0065; nucleotide-bind 99.0 9.8E-11 3.3E-15 91.4 3.0 36 5-42 29-64 (158)
131 2yhs_A FTSY, cell division pro 99.0 4.9E-10 1.7E-14 101.9 7.7 41 5-46 289-329 (503)
132 3kta_B Chromosome segregation 99.0 5.3E-10 1.8E-14 88.6 6.7 65 68-134 63-138 (173)
133 2o5v_A DNA replication and rep 99.0 3.8E-10 1.3E-14 99.1 6.1 74 71-150 267-353 (359)
134 1pui_A ENGB, probable GTP-bind 99.0 3.6E-10 1.2E-14 90.5 5.4 29 5-33 22-50 (210)
135 1sxj_E Activator 1 40 kDa subu 99.0 9.7E-10 3.3E-14 95.1 8.1 31 11-42 38-69 (354)
136 1nij_A Hypothetical protein YJ 98.8 5.9E-10 2E-14 96.2 1.4 53 71-128 143-195 (318)
137 3auy_A DNA double-strand break 98.8 7.7E-09 2.6E-13 90.9 7.7 63 71-134 282-357 (371)
138 1w1w_A Structural maintenance 98.8 4.9E-09 1.7E-13 93.9 6.2 64 70-134 334-408 (430)
139 3tr0_A Guanylate kinase, GMP k 98.8 2.8E-09 9.4E-14 85.1 3.8 30 5-34 3-32 (205)
140 2ce7_A Cell division protein F 98.8 1.7E-08 5.9E-13 91.7 9.4 95 11-124 51-166 (476)
141 1odf_A YGR205W, hypothetical 3 98.8 2.7E-10 9.3E-15 97.3 -2.7 30 7-36 29-58 (290)
142 1udx_A The GTP-binding protein 98.7 1.5E-08 5E-13 90.7 7.7 127 3-133 151-320 (416)
143 2r6a_A DNAB helicase, replicat 98.7 5E-08 1.7E-12 88.0 10.4 41 5-45 199-239 (454)
144 1zp6_A Hypothetical protein AT 98.7 9.4E-09 3.2E-13 81.2 4.9 36 5-43 5-40 (191)
145 3c8u_A Fructokinase; YP_612366 98.7 5.4E-09 1.8E-13 84.4 3.3 39 6-45 19-57 (208)
146 3lnc_A Guanylate kinase, GMP k 98.7 6.9E-09 2.3E-13 84.9 2.9 32 3-34 21-53 (231)
147 1fnn_A CDC6P, cell division co 98.7 1.3E-07 4.5E-12 82.2 10.8 115 11-132 46-179 (389)
148 1v5w_A DMC1, meiotic recombina 98.7 2.9E-07 9.9E-12 80.1 12.7 114 5-123 118-275 (343)
149 3euj_A Chromosome partition pr 98.6 8.2E-09 2.8E-13 93.8 2.3 38 5-44 26-63 (483)
150 2xau_A PRE-mRNA-splicing facto 98.6 2.6E-08 8.8E-13 95.5 5.8 127 4-130 104-260 (773)
151 1sq5_A Pantothenate kinase; P- 98.6 1.7E-08 5.8E-13 86.6 3.9 38 7-45 78-117 (308)
152 1lvg_A Guanylate kinase, GMP k 98.6 1.1E-08 3.7E-13 82.2 2.5 29 6-34 1-29 (198)
153 2qm8_A GTPase/ATPase; G protei 98.6 1.5E-08 5.3E-13 88.1 3.6 42 4-46 50-91 (337)
154 3b9p_A CG5977-PA, isoform A; A 98.6 3.5E-07 1.2E-11 77.2 11.8 73 8-99 53-125 (297)
155 2z43_A DNA repair and recombin 98.6 3.6E-07 1.2E-11 78.8 11.7 114 5-123 103-259 (324)
156 3a00_A Guanylate kinase, GMP k 98.6 1.6E-08 5.5E-13 80.2 2.9 28 9-36 1-28 (186)
157 4a1f_A DNAB helicase, replicat 98.6 3.1E-07 1.1E-11 79.9 10.8 109 5-121 42-165 (338)
158 3kl4_A SRP54, signal recogniti 98.6 4.8E-08 1.7E-12 87.7 5.9 94 8-105 96-200 (433)
159 2j41_A Guanylate kinase; GMP, 98.6 3.6E-08 1.2E-12 78.6 4.1 32 5-36 2-33 (207)
160 2b8t_A Thymidine kinase; deoxy 98.5 1.2E-07 4.2E-12 77.9 7.0 108 3-123 6-127 (223)
161 2x8a_A Nuclear valosin-contain 98.5 2E-07 6.8E-12 78.6 7.4 29 5-35 42-70 (274)
162 1u94_A RECA protein, recombina 98.5 7.9E-07 2.7E-11 77.9 11.3 109 5-123 59-201 (356)
163 1kgd_A CASK, peripheral plasma 98.5 6.2E-08 2.1E-12 76.4 3.8 29 7-35 3-31 (180)
164 2qby_A CDC6 homolog 1, cell di 98.5 6.9E-08 2.3E-12 83.5 4.3 120 8-132 44-183 (386)
165 3k1j_A LON protease, ATP-depen 98.5 8.4E-08 2.9E-12 89.5 4.9 39 4-42 55-93 (604)
166 3io5_A Recombination and repai 98.5 1.4E-06 4.8E-11 75.1 11.9 108 6-123 26-173 (333)
167 3bh0_A DNAB-like replicative h 98.5 4.7E-07 1.6E-11 77.8 8.9 114 5-122 64-191 (315)
168 1u0l_A Probable GTPase ENGC; p 98.5 8.2E-08 2.8E-12 82.1 3.7 37 6-43 166-202 (301)
169 4eun_A Thermoresistant glucoki 98.4 8.4E-08 2.9E-12 76.7 3.2 27 7-33 27-53 (200)
170 2z4s_A Chromosomal replication 98.4 7.8E-08 2.7E-12 86.5 3.2 99 9-122 130-237 (440)
171 3tau_A Guanylate kinase, GMP k 98.4 1.4E-07 4.7E-12 76.2 4.2 30 6-35 5-34 (208)
172 3bos_A Putative DNA replicatio 98.4 7.2E-07 2.4E-11 72.1 7.7 37 8-45 51-87 (242)
173 1rz3_A Hypothetical protein rb 98.4 1.3E-07 4.6E-12 75.8 3.1 39 6-45 19-57 (201)
174 3cf0_A Transitional endoplasmi 98.4 8.6E-07 2.9E-11 75.5 8.1 74 6-98 46-119 (301)
175 2bbw_A Adenylate kinase 4, AK4 98.4 1.9E-07 6.3E-12 77.1 3.8 30 7-36 25-57 (246)
176 2qag_B Septin-6, protein NEDD5 98.4 1.2E-07 4E-12 85.0 2.6 30 4-33 35-66 (427)
177 1zu4_A FTSY; GTPase, signal re 98.4 2.8E-07 9.5E-12 79.6 4.8 42 5-47 101-142 (320)
178 2rcn_A Probable GTPase ENGC; Y 98.4 2.3E-07 8E-12 81.3 4.4 35 7-42 213-248 (358)
179 1t9h_A YLOQ, probable GTPase E 98.4 7E-08 2.4E-12 83.0 0.8 38 5-43 169-206 (307)
180 3h4m_A Proteasome-activating n 98.3 2.8E-06 9.6E-11 71.0 10.2 74 6-98 48-121 (285)
181 3uie_A Adenylyl-sulfate kinase 98.3 2E-07 6.8E-12 74.5 2.9 29 6-34 22-50 (200)
182 3kta_A Chromosome segregation 98.3 3E-07 1E-11 72.0 3.8 30 6-36 24-53 (182)
183 1qhl_A Protein (cell division 98.3 2.2E-08 7.7E-13 82.5 -3.0 33 10-43 28-60 (227)
184 1kag_A SKI, shikimate kinase I 98.3 2.6E-07 9.1E-12 71.6 3.2 28 8-35 3-30 (173)
185 1xp8_A RECA protein, recombina 98.3 5.2E-06 1.8E-10 72.9 11.8 109 5-123 70-212 (366)
186 2yv5_A YJEQ protein; hydrolase 98.3 3.4E-07 1.2E-11 78.3 4.0 35 7-43 163-197 (302)
187 2vp4_A Deoxynucleoside kinase; 98.3 3.3E-07 1.1E-11 75.0 3.7 37 5-46 16-52 (230)
188 1ixz_A ATP-dependent metallopr 98.3 5.5E-07 1.9E-11 74.4 4.9 28 5-34 47-74 (254)
189 1ypw_A Transitional endoplasmi 98.3 1.4E-06 4.8E-11 83.8 8.4 74 5-97 234-307 (806)
190 1knq_A Gluconate kinase; ALFA/ 98.3 3E-07 1E-11 71.6 2.8 27 7-33 6-32 (175)
191 3cr8_A Sulfate adenylyltranfer 98.3 3.2E-07 1.1E-11 84.8 3.4 42 5-46 365-406 (552)
192 4e22_A Cytidylate kinase; P-lo 98.3 3.4E-07 1.2E-11 76.1 3.2 30 7-36 25-57 (252)
193 2ius_A DNA translocase FTSK; n 98.3 1.3E-06 4.5E-11 79.9 6.9 27 5-31 163-189 (512)
194 1iy2_A ATP-dependent metallopr 98.2 9.7E-07 3.3E-11 74.0 5.5 28 5-34 71-98 (278)
195 1l8q_A Chromosomal replication 98.2 3.9E-07 1.3E-11 78.0 3.1 96 9-121 37-140 (324)
196 2w58_A DNAI, primosome compone 98.2 1.2E-06 4E-11 69.8 5.1 34 10-44 55-88 (202)
197 2i1q_A DNA repair and recombin 98.2 8.6E-06 2.9E-10 69.8 10.6 28 5-32 94-121 (322)
198 4fcw_A Chaperone protein CLPB; 98.2 2.2E-06 7.4E-11 72.5 6.7 36 9-45 47-82 (311)
199 2r8r_A Sensor protein; KDPD, P 98.2 2.5E-06 8.5E-11 70.1 6.7 108 7-121 3-126 (228)
200 2orw_A Thymidine kinase; TMTK, 98.2 4.8E-06 1.6E-10 66.1 8.1 109 8-123 2-114 (184)
201 2qt1_A Nicotinamide riboside k 98.2 8.9E-07 3.1E-11 70.9 3.9 31 3-33 15-45 (207)
202 3m6a_A ATP-dependent protease 98.2 6.9E-07 2.4E-11 82.4 3.3 29 8-36 107-135 (543)
203 2qz4_A Paraplegin; AAA+, SPG7, 98.2 1E-05 3.5E-10 66.5 10.0 73 7-98 37-109 (262)
204 3tqc_A Pantothenate kinase; bi 98.1 1.1E-06 3.8E-11 75.9 3.9 35 11-46 94-130 (321)
205 3cmw_A Protein RECA, recombina 98.1 5.3E-06 1.8E-10 84.9 9.2 106 6-122 729-869 (1706)
206 3ney_A 55 kDa erythrocyte memb 98.1 1.2E-06 4.2E-11 70.5 3.7 28 7-34 17-44 (197)
207 1lv7_A FTSH; alpha/beta domain 98.1 7.3E-06 2.5E-10 67.7 8.5 68 10-96 46-113 (257)
208 3vaa_A Shikimate kinase, SK; s 98.1 1.1E-06 3.9E-11 70.0 3.2 31 4-34 20-50 (199)
209 2f1r_A Molybdopterin-guanine d 98.1 8.5E-07 2.9E-11 69.8 2.1 27 10-36 3-29 (171)
210 1j8m_F SRP54, signal recogniti 98.1 5.5E-06 1.9E-10 70.7 7.3 87 9-99 98-192 (297)
211 1xwi_A SKD1 protein; VPS4B, AA 98.1 1.3E-05 4.6E-10 68.8 9.3 75 6-98 42-116 (322)
212 2www_A Methylmalonic aciduria 98.1 2E-06 6.8E-11 75.0 4.0 38 8-46 73-110 (349)
213 3dm5_A SRP54, signal recogniti 98.1 1.6E-05 5.3E-10 71.5 9.7 87 8-98 99-193 (443)
214 2e87_A Hypothetical protein PH 98.1 9.2E-06 3.2E-10 70.8 8.1 26 8-33 166-191 (357)
215 2yvu_A Probable adenylyl-sulfa 98.1 2.3E-06 8E-11 67.2 3.8 40 5-45 9-48 (186)
216 2pez_A Bifunctional 3'-phospho 98.1 2.3E-06 7.8E-11 66.9 3.6 29 7-35 3-31 (179)
217 1w1w_A Structural maintenance 98.1 2E-06 6.9E-11 76.8 3.7 31 6-36 23-53 (430)
218 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 3E-06 1E-10 75.1 4.6 50 87-138 139-198 (392)
219 3d8b_A Fidgetin-like protein 1 98.0 1.5E-05 5.3E-10 69.3 8.9 71 7-96 115-185 (357)
220 4b4t_L 26S protease subunit RP 98.0 9.2E-06 3.2E-10 72.9 7.4 74 6-98 212-285 (437)
221 2dy1_A Elongation factor G; tr 98.0 1.8E-05 6.1E-10 74.6 9.6 119 4-125 4-139 (665)
222 4b4t_J 26S protease regulatory 98.0 8.1E-06 2.8E-10 72.5 6.7 73 7-98 180-252 (405)
223 1cke_A CK, MSSA, protein (cyti 98.0 2.9E-06 1E-10 68.5 3.2 26 8-33 4-29 (227)
224 1in4_A RUVB, holliday junction 98.0 1E-06 3.4E-11 76.2 0.4 25 10-34 52-76 (334)
225 2p67_A LAO/AO transport system 98.0 3E-06 1E-10 73.5 3.5 41 5-46 52-92 (341)
226 1svm_A Large T antigen; AAA+ f 98.0 2.7E-06 9.3E-11 75.0 3.1 29 5-33 165-193 (377)
227 2v1u_A Cell division control p 98.0 5.1E-06 1.7E-10 71.8 4.8 28 7-34 42-69 (387)
228 4b4t_M 26S protease regulatory 98.0 1.1E-05 3.6E-10 72.5 6.9 73 6-97 212-284 (434)
229 1xx6_A Thymidine kinase; NESG, 98.0 1.9E-05 6.6E-10 63.1 7.8 110 6-123 5-119 (191)
230 2wji_A Ferrous iron transport 98.0 3.3E-05 1.1E-09 59.1 8.8 24 11-34 5-28 (165)
231 2qgz_A Helicase loader, putati 98.0 7.4E-06 2.5E-10 70.1 5.5 35 9-44 152-187 (308)
232 3vfd_A Spastin; ATPase, microt 98.0 4.9E-05 1.7E-09 66.8 10.8 72 8-98 147-218 (389)
233 2zts_A Putative uncharacterize 98.0 3.1E-05 1.1E-09 62.9 8.9 39 6-45 27-66 (251)
234 3eie_A Vacuolar protein sortin 98.0 1.4E-05 4.6E-10 68.6 6.9 73 7-98 49-121 (322)
235 2zan_A Vacuolar protein sortin 97.9 3.5E-05 1.2E-09 69.2 9.7 74 7-98 165-238 (444)
236 1w4r_A Thymidine kinase; type 97.9 2.6E-05 8.7E-10 62.6 7.9 108 7-125 18-130 (195)
237 1jjv_A Dephospho-COA kinase; P 97.9 4.7E-06 1.6E-10 66.5 3.5 21 11-31 4-24 (206)
238 2qp9_X Vacuolar protein sortin 97.9 2.3E-05 7.8E-10 68.3 8.0 73 7-98 82-154 (355)
239 1oix_A RAS-related protein RAB 97.9 5.8E-06 2E-10 65.2 3.7 25 11-35 31-55 (191)
240 3nwj_A ATSK2; P loop, shikimat 97.9 2.5E-06 8.5E-11 71.1 1.6 31 5-35 41-74 (250)
241 2o5v_A DNA replication and rep 97.9 4.2E-06 1.4E-10 73.3 3.1 26 5-31 23-48 (359)
242 2dhr_A FTSH; AAA+ protein, hex 97.9 5.3E-06 1.8E-10 75.7 3.8 28 5-34 62-89 (499)
243 2ffh_A Protein (FFH); SRP54, s 97.9 2.5E-05 8.4E-10 69.9 8.1 39 8-47 97-135 (425)
244 2vhj_A Ntpase P4, P4; non- hyd 97.9 1.9E-05 6.5E-10 68.2 6.9 27 6-32 120-146 (331)
245 2qor_A Guanylate kinase; phosp 97.9 5.3E-06 1.8E-10 66.3 3.2 30 5-34 8-37 (204)
246 2j9r_A Thymidine kinase; TK1, 97.9 1.3E-05 4.6E-10 65.2 5.6 112 6-123 25-139 (214)
247 4b4t_H 26S protease regulatory 97.9 1.7E-05 6E-10 71.4 6.8 74 6-98 240-313 (467)
248 3syl_A Protein CBBX; photosynt 97.9 6.3E-05 2.2E-09 63.3 10.0 29 7-35 65-93 (309)
249 4b4t_K 26S protease regulatory 97.9 2.1E-05 7.1E-10 70.5 7.1 72 7-97 204-275 (428)
250 1m7g_A Adenylylsulfate kinase; 97.9 4.6E-06 1.6E-10 67.1 2.6 41 5-45 21-61 (211)
251 1jbk_A CLPB protein; beta barr 97.9 3.5E-05 1.2E-09 59.3 7.6 27 8-34 42-68 (195)
252 3cmw_A Protein RECA, recombina 97.9 8E-05 2.7E-09 76.4 12.0 106 6-122 380-520 (1706)
253 4b4t_I 26S protease regulatory 97.9 1.9E-05 6.4E-10 70.7 6.6 73 7-98 214-286 (437)
254 3cmu_A Protein RECA, recombina 97.9 8.2E-05 2.8E-09 77.3 11.9 82 5-97 1423-1515(2050)
255 2q6t_A DNAB replication FORK h 97.9 6.7E-05 2.3E-09 67.2 10.0 108 6-120 197-318 (444)
256 2if2_A Dephospho-COA kinase; a 97.8 8E-06 2.7E-10 64.9 3.3 21 11-31 3-23 (204)
257 2f9l_A RAB11B, member RAS onco 97.8 9.7E-06 3.3E-10 64.1 3.5 24 11-34 7-30 (199)
258 3cmu_A Protein RECA, recombina 97.8 0.00012 4.2E-09 76.0 11.8 108 6-123 380-521 (2050)
259 1f2t_A RAD50 ABC-ATPase; DNA d 97.8 1.3E-05 4.4E-10 61.4 3.5 24 10-33 24-47 (149)
260 3cm0_A Adenylate kinase; ATP-b 97.8 1.1E-05 3.7E-10 63.0 3.1 27 7-33 2-28 (186)
261 1d2n_A N-ethylmaleimide-sensit 97.8 4.2E-05 1.4E-09 63.6 6.9 26 8-33 63-88 (272)
262 2r62_A Cell division protease 97.8 4.2E-06 1.4E-10 69.4 0.4 25 10-34 45-69 (268)
263 4eaq_A DTMP kinase, thymidylat 97.7 2.7E-05 9.1E-10 63.8 4.8 37 5-43 22-58 (229)
264 3bgw_A DNAB-like replicative h 97.7 0.00012 4.1E-09 65.8 9.5 111 6-121 194-319 (444)
265 3e2i_A Thymidine kinase; Zn-bi 97.7 7E-05 2.4E-09 61.0 7.0 114 4-124 23-140 (219)
266 3t34_A Dynamin-related protein 97.7 0.00021 7.2E-09 62.1 10.5 22 11-32 36-57 (360)
267 2gj8_A MNME, tRNA modification 97.7 1.8E-05 6.2E-10 61.2 3.3 27 7-33 2-28 (172)
268 3t61_A Gluconokinase; PSI-biol 97.7 1.7E-05 5.8E-10 63.0 3.2 25 9-33 18-42 (202)
269 1qhx_A CPT, protein (chloramph 97.7 2.5E-05 8.5E-10 60.5 3.8 27 8-34 2-28 (178)
270 2chg_A Replication factor C sm 97.7 0.00014 4.7E-09 57.3 8.1 23 11-33 40-62 (226)
271 1y63_A LMAJ004144AAA protein; 97.7 2.7E-05 9.1E-10 61.2 3.8 28 5-32 6-33 (184)
272 3hu3_A Transitional endoplasmi 97.7 0.00012 4.2E-09 66.5 8.6 72 6-96 235-306 (489)
273 3kb2_A SPBC2 prophage-derived 97.7 2.1E-05 7.2E-10 60.3 2.9 24 11-34 3-26 (173)
274 1np6_A Molybdopterin-guanine d 97.7 2.7E-05 9.3E-10 61.3 3.6 33 10-43 7-39 (174)
275 3pvs_A Replication-associated 97.7 9.8E-05 3.3E-09 66.4 7.7 31 5-35 44-76 (447)
276 2qby_B CDC6 homolog 3, cell di 97.6 5E-05 1.7E-09 65.7 5.3 25 9-33 45-69 (384)
277 2orv_A Thymidine kinase; TP4A 97.6 0.00021 7.1E-09 58.8 8.7 108 7-122 17-126 (234)
278 2rhm_A Putative kinase; P-loop 97.6 2.9E-05 9.9E-10 60.7 3.3 28 6-33 2-29 (193)
279 1sxj_C Activator 1 40 kDa subu 97.6 1.3E-05 4.3E-10 69.1 1.3 33 4-36 39-73 (340)
280 2v3c_C SRP54, signal recogniti 97.6 6E-05 2E-09 67.6 5.7 37 10-47 100-136 (432)
281 1kht_A Adenylate kinase; phosp 97.6 3.5E-05 1.2E-09 60.1 3.6 27 8-34 2-28 (192)
282 3t15_A Ribulose bisphosphate c 97.6 3E-05 1E-09 65.7 3.4 28 7-34 34-61 (293)
283 1q3t_A Cytidylate kinase; nucl 97.6 3.6E-05 1.2E-09 62.9 3.7 27 7-33 14-40 (236)
284 1ypw_A Transitional endoplasmi 97.6 1.4E-05 4.6E-10 77.0 1.2 74 5-97 507-580 (806)
285 3cf2_A TER ATPase, transitiona 97.6 6.4E-05 2.2E-09 72.2 5.6 73 7-98 236-308 (806)
286 2v54_A DTMP kinase, thymidylat 97.6 4.8E-05 1.6E-09 60.1 4.0 27 7-33 2-28 (204)
287 2p5t_B PEZT; postsegregational 97.5 2.8E-05 9.4E-10 64.4 2.3 30 5-34 28-57 (253)
288 3lw7_A Adenylate kinase relate 97.5 4.4E-05 1.5E-09 58.2 3.2 19 11-29 3-21 (179)
289 2c95_A Adenylate kinase 1; tra 97.5 3.7E-05 1.3E-09 60.3 2.9 29 5-33 5-33 (196)
290 3qks_A DNA double-strand break 97.5 4.7E-05 1.6E-09 61.1 3.4 24 10-33 24-47 (203)
291 4dcu_A GTP-binding protein ENG 97.5 0.00014 4.7E-09 65.4 6.7 104 11-123 25-142 (456)
292 2wwf_A Thymidilate kinase, put 97.5 6.2E-05 2.1E-09 59.8 3.9 30 5-34 6-35 (212)
293 3iij_A Coilin-interacting nucl 97.5 4.9E-05 1.7E-09 59.1 3.1 29 5-33 7-35 (180)
294 3trf_A Shikimate kinase, SK; a 97.5 5.8E-05 2E-09 58.8 3.5 27 8-34 4-30 (185)
295 3umf_A Adenylate kinase; rossm 97.5 5.5E-05 1.9E-09 61.7 3.4 31 3-33 23-53 (217)
296 1ly1_A Polynucleotide kinase; 97.5 5.8E-05 2E-09 58.2 3.4 22 10-31 3-24 (181)
297 2ga8_A Hypothetical 39.9 kDa p 97.5 3E-05 1E-09 67.8 1.9 32 4-35 17-50 (359)
298 1xjc_A MOBB protein homolog; s 97.5 7.3E-05 2.5E-09 58.6 3.9 35 10-45 5-39 (169)
299 1via_A Shikimate kinase; struc 97.5 4.1E-05 1.4E-09 59.3 2.4 24 11-34 6-29 (175)
300 1q57_A DNA primase/helicase; d 97.5 0.00068 2.3E-08 61.5 10.8 40 6-45 239-278 (503)
301 2plr_A DTMP kinase, probable t 97.5 6.4E-05 2.2E-09 59.5 3.5 28 8-35 3-30 (213)
302 2jaq_A Deoxyguanosine kinase; 97.5 5.4E-05 1.8E-09 59.6 3.0 24 11-34 2-25 (205)
303 1vht_A Dephospho-COA kinase; s 97.5 6.8E-05 2.3E-09 60.2 3.6 24 8-31 3-26 (218)
304 2wjg_A FEOB, ferrous iron tran 97.5 6.9E-05 2.4E-09 58.0 3.4 22 11-32 9-30 (188)
305 2ze6_A Isopentenyl transferase 97.4 6.5E-05 2.2E-09 62.3 3.3 25 10-34 2-26 (253)
306 1ega_A Protein (GTP-binding pr 97.4 5.8E-05 2E-09 64.2 2.9 27 6-33 6-32 (301)
307 1tev_A UMP-CMP kinase; ploop, 97.4 7.8E-05 2.7E-09 58.1 3.4 26 8-33 2-27 (196)
308 1nn5_A Similar to deoxythymidy 97.4 8E-05 2.8E-09 59.2 3.5 28 7-34 7-34 (215)
309 3e1s_A Exodeoxyribonuclease V, 97.4 0.00039 1.3E-08 64.4 8.4 36 8-44 203-238 (574)
310 2bwj_A Adenylate kinase 5; pho 97.4 6.6E-05 2.3E-09 58.9 2.8 29 6-34 9-37 (199)
311 3u61_B DNA polymerase accessor 97.4 0.0011 3.6E-08 56.3 10.4 25 10-34 49-73 (324)
312 2c9o_A RUVB-like 1; hexameric 97.4 0.00012 4.1E-09 65.7 4.7 28 8-35 62-89 (456)
313 1aky_A Adenylate kinase; ATP:A 97.4 9.8E-05 3.4E-09 59.4 3.7 28 7-34 2-29 (220)
314 4ag6_A VIRB4 ATPase, type IV s 97.4 9.8E-05 3.4E-09 64.8 4.0 37 8-45 34-70 (392)
315 1gtv_A TMK, thymidylate kinase 97.4 3.4E-05 1.2E-09 61.4 0.9 33 11-44 2-34 (214)
316 2zej_A Dardarin, leucine-rich 97.4 7.5E-05 2.6E-09 58.1 2.8 23 11-33 4-26 (184)
317 3te6_A Regulatory protein SIR3 97.4 0.00029 9.9E-09 60.6 6.6 27 8-34 44-70 (318)
318 3r20_A Cytidylate kinase; stru 97.4 7.6E-05 2.6E-09 61.5 2.9 27 8-34 8-34 (233)
319 2vli_A Antibiotic resistance p 97.4 7E-05 2.4E-09 58.1 2.4 27 8-34 4-30 (183)
320 3pfi_A Holliday junction ATP-d 97.4 0.00082 2.8E-08 57.3 9.4 25 10-34 56-80 (338)
321 1nks_A Adenylate kinase; therm 97.4 0.0001 3.5E-09 57.4 3.3 33 11-44 3-35 (194)
322 1uf9_A TT1252 protein; P-loop, 97.4 0.00011 3.8E-09 57.8 3.5 25 8-32 7-31 (203)
323 1sxj_A Activator 1 95 kDa subu 97.4 0.00078 2.7E-08 61.4 9.6 25 9-33 77-101 (516)
324 1gvn_B Zeta; postsegregational 97.3 9.1E-05 3.1E-09 62.7 3.0 27 7-33 31-57 (287)
325 2cdn_A Adenylate kinase; phosp 97.3 0.00014 4.7E-09 57.6 3.7 27 7-33 18-44 (201)
326 1zd8_A GTP:AMP phosphotransfer 97.3 0.00012 4.2E-09 59.1 3.5 28 6-33 4-31 (227)
327 1zuh_A Shikimate kinase; alpha 97.3 0.00013 4.6E-09 55.9 3.5 26 9-34 7-32 (168)
328 3ake_A Cytidylate kinase; CMP 97.3 0.00013 4.4E-09 57.6 2.9 24 11-34 4-27 (208)
329 3fb4_A Adenylate kinase; psych 97.3 0.00015 5.3E-09 57.8 3.3 23 11-33 2-24 (216)
330 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00017 5.7E-09 59.9 3.5 28 7-34 2-29 (260)
331 2z0h_A DTMP kinase, thymidylat 97.2 0.00017 5.7E-09 56.5 3.3 25 11-35 2-26 (197)
332 3pxi_A Negative regulator of g 97.2 0.0011 3.8E-08 63.1 9.4 34 11-45 523-556 (758)
333 2ohf_A Protein OLA1, GTP-bindi 97.2 0.00015 5.1E-09 64.2 3.2 29 4-32 17-45 (396)
334 1g5t_A COB(I)alamin adenosyltr 97.2 0.00053 1.8E-08 54.9 6.1 124 7-134 27-176 (196)
335 3dl0_A Adenylate kinase; phosp 97.2 0.00017 6E-09 57.6 3.3 23 11-33 2-24 (216)
336 4ad8_A DNA repair protein RECN 97.2 6.4E-05 2.2E-09 68.6 0.8 27 6-33 58-84 (517)
337 1zak_A Adenylate kinase; ATP:A 97.2 0.00015 5.3E-09 58.3 3.0 27 8-34 4-30 (222)
338 2pbr_A DTMP kinase, thymidylat 97.2 0.00018 6.3E-09 56.0 3.3 24 11-34 2-25 (195)
339 2iyv_A Shikimate kinase, SK; t 97.2 0.00015 5.1E-09 56.5 2.7 25 10-34 3-27 (184)
340 3lxx_A GTPase IMAP family memb 97.2 0.00019 6.4E-09 58.4 3.4 26 11-36 31-56 (239)
341 1njg_A DNA polymerase III subu 97.2 0.00012 4.2E-09 58.2 2.2 25 11-35 47-71 (250)
342 3k53_A Ferrous iron transport 97.2 0.00017 6E-09 60.0 3.2 24 11-34 5-28 (271)
343 1qf9_A UMP/CMP kinase, protein 97.2 0.00019 6.4E-09 55.8 3.2 25 9-33 6-30 (194)
344 1sxj_B Activator 1 37 kDa subu 97.2 0.0005 1.7E-08 57.8 6.1 22 12-33 45-66 (323)
345 1e6c_A Shikimate kinase; phosp 97.2 0.00017 5.9E-09 55.3 2.9 25 10-34 3-27 (173)
346 1ukz_A Uridylate kinase; trans 97.2 0.0002 6.9E-09 56.6 3.3 25 9-33 15-39 (203)
347 1ex7_A Guanylate kinase; subst 97.2 0.0002 6.7E-09 57.0 3.2 24 11-34 3-26 (186)
348 2pt5_A Shikimate kinase, SK; a 97.2 0.00022 7.6E-09 54.5 3.4 24 11-34 2-25 (168)
349 3auy_A DNA double-strand break 97.2 0.00018 6.2E-09 62.9 3.2 22 10-31 26-47 (371)
350 3be4_A Adenylate kinase; malar 97.2 0.00023 7.8E-09 57.3 3.5 26 8-33 4-29 (217)
351 3ice_A Transcription terminati 97.2 0.00024 8.2E-09 62.9 3.8 31 5-35 170-200 (422)
352 1qvr_A CLPB protein; coiled co 97.2 0.00081 2.8E-08 65.0 7.9 35 10-45 589-623 (854)
353 3sr0_A Adenylate kinase; phosp 97.2 0.00023 7.8E-09 57.4 3.3 23 11-33 2-24 (206)
354 3tlx_A Adenylate kinase 2; str 97.2 0.00023 8E-09 58.4 3.5 27 7-33 27-53 (243)
355 3llm_A ATP-dependent RNA helic 97.1 0.00015 5.1E-09 59.1 2.2 28 4-31 71-98 (235)
356 1ojl_A Transcriptional regulat 97.1 0.0025 8.4E-08 54.1 9.6 29 7-35 23-51 (304)
357 2xb4_A Adenylate kinase; ATP-b 97.1 0.0003 1E-08 56.9 3.4 23 11-33 2-24 (223)
358 3cf2_A TER ATPase, transitiona 97.1 0.00037 1.3E-08 66.9 4.5 73 7-98 509-581 (806)
359 1mky_A Probable GTP-binding pr 97.1 0.00028 9.7E-09 63.0 3.5 24 11-34 182-205 (439)
360 2qtf_A Protein HFLX, GTP-bindi 97.1 0.00025 8.6E-09 62.0 3.1 24 11-34 181-204 (364)
361 2ged_A SR-beta, signal recogni 97.1 0.00034 1.2E-08 54.3 3.4 24 10-33 49-72 (193)
362 1z2a_A RAS-related protein RAB 97.1 0.00032 1.1E-08 52.8 3.1 23 11-33 7-29 (168)
363 1ak2_A Adenylate kinase isoenz 97.0 0.00038 1.3E-08 56.5 3.7 28 7-34 14-41 (233)
364 1e4v_A Adenylate kinase; trans 97.0 0.00033 1.1E-08 56.1 3.2 23 11-33 2-24 (214)
365 1kao_A RAP2A; GTP-binding prot 97.0 0.00035 1.2E-08 52.3 3.2 23 11-33 5-27 (167)
366 1uj2_A Uridine-cytidine kinase 97.0 0.00035 1.2E-08 57.5 3.4 25 10-34 23-47 (252)
367 2nzj_A GTP-binding protein REM 97.0 0.00034 1.2E-08 53.1 3.1 23 11-33 6-28 (175)
368 2dyk_A GTP-binding protein; GT 97.0 0.00041 1.4E-08 51.9 3.4 23 11-33 3-25 (161)
369 2erx_A GTP-binding protein DI- 97.0 0.00037 1.3E-08 52.6 3.2 22 11-32 5-26 (172)
370 2ce2_X GTPase HRAS; signaling 97.0 0.00039 1.3E-08 51.9 3.3 23 11-33 5-27 (166)
371 1sxj_D Activator 1 41 kDa subu 97.0 0.00023 7.9E-09 60.8 2.2 30 5-34 52-83 (353)
372 2grj_A Dephospho-COA kinase; T 97.0 0.00038 1.3E-08 55.4 3.3 25 9-33 12-36 (192)
373 1u8z_A RAS-related protein RAL 97.0 0.00038 1.3E-08 52.2 3.1 23 11-33 6-28 (168)
374 2p65_A Hypothetical protein PF 97.0 0.00035 1.2E-08 53.5 3.0 28 8-35 42-69 (187)
375 2lkc_A Translation initiation 97.0 0.00053 1.8E-08 52.3 4.0 28 6-33 5-32 (178)
376 3iev_A GTP-binding protein ERA 97.0 0.00035 1.2E-08 59.5 3.2 23 11-33 12-34 (308)
377 3q72_A GTP-binding protein RAD 97.0 0.00029 9.8E-09 53.1 2.4 23 11-33 4-26 (166)
378 1z0j_A RAB-22, RAS-related pro 97.0 0.00041 1.4E-08 52.3 3.2 23 11-33 8-30 (170)
379 2j37_W Signal recognition part 97.0 0.0012 4.1E-08 60.2 6.8 38 8-46 100-137 (504)
380 3q85_A GTP-binding protein REM 97.0 0.00039 1.4E-08 52.5 3.0 23 11-33 4-26 (169)
381 1z08_A RAS-related protein RAB 97.0 0.00043 1.5E-08 52.3 3.2 23 11-33 8-30 (170)
382 1g16_A RAS-related protein SEC 97.0 0.00041 1.4E-08 52.3 3.0 23 11-33 5-27 (170)
383 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.00044 1.5E-08 52.7 3.2 23 11-33 9-31 (177)
384 1ek0_A Protein (GTP-binding pr 97.0 0.00044 1.5E-08 52.1 3.1 23 11-33 5-27 (170)
385 3b1v_A Ferrous iron uptake tra 97.0 0.00042 1.5E-08 58.1 3.3 23 11-33 5-27 (272)
386 1c1y_A RAS-related protein RAP 97.0 0.00045 1.5E-08 51.9 3.1 23 11-33 5-27 (167)
387 1ky3_A GTP-binding protein YPT 96.9 0.00046 1.6E-08 52.6 3.2 23 11-33 10-32 (182)
388 3tw8_B RAS-related protein RAB 96.9 0.00039 1.4E-08 53.0 2.6 23 11-33 11-33 (181)
389 3n70_A Transport activator; si 96.9 0.00066 2.3E-08 51.1 3.8 29 7-35 22-50 (145)
390 2xxa_A Signal recognition part 96.9 0.0031 1.1E-07 56.4 8.8 40 9-48 100-139 (433)
391 2fn4_A P23, RAS-related protei 96.9 0.00048 1.7E-08 52.5 3.1 23 11-33 11-33 (181)
392 1svi_A GTP-binding protein YSX 96.9 0.00048 1.6E-08 53.5 3.0 24 10-33 24-47 (195)
393 1r2q_A RAS-related protein RAB 96.9 0.00052 1.8E-08 51.6 3.1 22 11-32 8-29 (170)
394 4edh_A DTMP kinase, thymidylat 96.9 0.00068 2.3E-08 54.8 4.0 37 7-44 4-40 (213)
395 3p32_A Probable GTPase RV1496/ 96.9 0.00056 1.9E-08 59.4 3.8 39 8-47 78-116 (355)
396 1fzq_A ADP-ribosylation factor 96.9 0.00037 1.3E-08 54.0 2.4 23 10-32 17-39 (181)
397 3clv_A RAB5 protein, putative; 96.9 0.00054 1.8E-08 53.0 3.2 23 11-33 9-31 (208)
398 3t1o_A Gliding protein MGLA; G 96.9 0.00063 2.1E-08 52.6 3.6 26 11-36 16-41 (198)
399 1m2o_B GTP-binding protein SAR 96.9 0.00055 1.9E-08 53.5 3.3 23 10-32 24-46 (190)
400 2f6r_A COA synthase, bifunctio 96.9 0.00051 1.7E-08 57.7 3.3 23 9-31 75-97 (281)
401 4dsu_A GTPase KRAS, isoform 2B 96.9 0.00054 1.9E-08 52.6 3.2 23 11-33 6-28 (189)
402 1ltq_A Polynucleotide kinase; 96.9 0.00055 1.9E-08 57.5 3.4 23 10-32 3-25 (301)
403 3bc1_A RAS-related protein RAB 96.9 0.00055 1.9E-08 52.7 3.1 23 11-33 13-35 (195)
404 2hxs_A RAB-26, RAS-related pro 96.9 0.0006 2.1E-08 51.9 3.3 23 11-33 8-30 (178)
405 3pqc_A Probable GTP-binding pr 96.9 0.00054 1.8E-08 52.9 3.0 23 11-33 25-47 (195)
406 2cxx_A Probable GTP-binding pr 96.9 0.00048 1.6E-08 53.1 2.7 23 11-33 3-25 (190)
407 2oil_A CATX-8, RAS-related pro 96.9 0.00057 2E-08 53.1 3.1 23 11-33 27-49 (193)
408 1f6b_A SAR1; gtpases, N-termin 96.8 0.00037 1.3E-08 54.9 2.0 24 7-31 24-47 (198)
409 3lxw_A GTPase IMAP family memb 96.8 0.00062 2.1E-08 56.0 3.4 24 11-34 23-46 (247)
410 1qvr_A CLPB protein; coiled co 96.8 0.0014 4.8E-08 63.3 6.3 25 10-34 192-216 (854)
411 1z0f_A RAB14, member RAS oncog 96.8 0.00064 2.2E-08 51.7 3.1 23 11-33 17-39 (179)
412 2y8e_A RAB-protein 6, GH09086P 96.8 0.00061 2.1E-08 51.8 3.0 23 11-33 16-38 (179)
413 1r8s_A ADP-ribosylation factor 96.8 0.00066 2.3E-08 51.0 3.1 23 11-33 2-24 (164)
414 2a9k_A RAS-related protein RAL 96.8 0.00065 2.2E-08 52.0 3.1 23 11-33 20-42 (187)
415 1nrj_B SR-beta, signal recogni 96.8 0.00071 2.4E-08 53.7 3.4 24 10-33 13-36 (218)
416 1r6b_X CLPA protein; AAA+, N-t 96.8 0.004 1.4E-07 59.1 9.1 23 11-33 490-512 (758)
417 3v9p_A DTMP kinase, thymidylat 96.8 0.00054 1.8E-08 56.1 2.7 30 6-35 22-51 (227)
418 3con_A GTPase NRAS; structural 96.8 0.00068 2.3E-08 52.4 3.1 23 11-33 23-45 (190)
419 2g6b_A RAS-related protein RAB 96.8 0.0007 2.4E-08 51.7 3.1 24 11-34 12-35 (180)
420 2efe_B Small GTP-binding prote 96.8 0.00072 2.5E-08 51.6 3.2 23 11-33 14-36 (181)
421 1wf3_A GTP-binding protein; GT 96.8 0.0007 2.4E-08 57.6 3.4 27 6-33 5-31 (301)
422 1upt_A ARL1, ADP-ribosylation 96.8 0.00086 3E-08 50.6 3.6 27 7-33 5-31 (171)
423 2wsm_A Hydrogenase expression/ 96.8 0.00073 2.5E-08 53.8 3.3 34 10-45 31-64 (221)
424 2bme_A RAB4A, RAS-related prot 96.8 0.00068 2.3E-08 52.1 3.0 23 11-33 12-34 (186)
425 1moz_A ARL1, ADP-ribosylation 96.8 0.0004 1.4E-08 53.3 1.6 24 8-31 17-40 (183)
426 3iby_A Ferrous iron transport 96.8 0.00071 2.4E-08 56.1 3.2 23 11-33 3-25 (256)
427 1a5t_A Delta prime, HOLB; zinc 96.8 0.0059 2E-07 52.3 9.2 29 6-34 18-49 (334)
428 2h92_A Cytidylate kinase; ross 96.8 0.00067 2.3E-08 54.2 2.9 26 9-34 3-28 (219)
429 3zvl_A Bifunctional polynucleo 96.8 0.00078 2.7E-08 59.8 3.5 26 8-33 257-282 (416)
430 1yrb_A ATP(GTP)binding protein 96.7 0.0013 4.4E-08 53.8 4.6 39 8-48 13-51 (262)
431 1vg8_A RAS-related protein RAB 96.7 0.00079 2.7E-08 52.7 3.2 23 11-33 10-32 (207)
432 1m7b_A RND3/RHOE small GTP-bin 96.7 0.00075 2.6E-08 52.1 3.0 23 11-33 9-31 (184)
433 2bov_A RAla, RAS-related prote 96.7 0.00079 2.7E-08 52.6 3.1 23 11-33 16-38 (206)
434 3tkl_A RAS-related protein RAB 96.7 0.00082 2.8E-08 52.1 3.1 23 11-33 18-40 (196)
435 2gf9_A RAS-related protein RAB 96.7 0.00082 2.8E-08 52.1 3.1 23 11-33 24-46 (189)
436 2xtp_A GTPase IMAP family memb 96.7 0.00083 2.8E-08 55.2 3.3 23 11-33 24-46 (260)
437 3a8t_A Adenylate isopentenyltr 96.7 0.00098 3.3E-08 57.8 3.9 27 8-34 39-65 (339)
438 2gf0_A GTP-binding protein DI- 96.7 0.0008 2.7E-08 52.3 3.1 23 11-33 10-32 (199)
439 3ihw_A Centg3; RAS, centaurin, 96.7 0.00085 2.9E-08 52.2 3.2 22 11-32 22-43 (184)
440 2fg5_A RAB-22B, RAS-related pr 96.7 0.00082 2.8E-08 52.4 3.1 23 11-33 25-47 (192)
441 3tmk_A Thymidylate kinase; pho 96.7 0.00085 2.9E-08 54.5 3.2 29 7-35 3-31 (216)
442 3kkq_A RAS-related protein M-R 96.7 0.00096 3.3E-08 51.2 3.4 23 11-33 20-42 (183)
443 2dby_A GTP-binding protein; GD 96.7 0.0008 2.7E-08 59.0 3.1 23 11-33 3-25 (368)
444 1mh1_A RAC1; GTP-binding, GTPa 96.7 0.0009 3.1E-08 51.2 3.1 23 11-33 7-29 (186)
445 1ksh_A ARF-like protein 2; sma 96.7 0.00079 2.7E-08 51.9 2.8 26 8-33 17-42 (186)
446 2bjv_A PSP operon transcriptio 96.7 0.0011 3.8E-08 54.6 3.9 38 7-45 27-64 (265)
447 2qag_A Septin-2, protein NEDD5 96.7 0.0006 2E-08 59.5 2.3 23 12-34 40-62 (361)
448 1a7j_A Phosphoribulokinase; tr 96.7 0.00043 1.5E-08 58.6 1.3 27 8-34 4-30 (290)
449 2cjw_A GTP-binding protein GEM 96.7 0.00092 3.2E-08 52.4 3.1 22 11-32 8-29 (192)
450 3lv8_A DTMP kinase, thymidylat 96.7 0.001 3.5E-08 54.7 3.5 30 7-36 25-54 (236)
451 3t5g_A GTP-binding protein RHE 96.7 0.00091 3.1E-08 51.2 3.0 22 11-32 8-29 (181)
452 1jal_A YCHF protein; nucleotid 96.7 0.001 3.5E-08 58.2 3.6 24 9-32 2-25 (363)
453 3oes_A GTPase rhebl1; small GT 96.7 0.00089 3.1E-08 52.6 3.0 23 11-33 26-48 (201)
454 3a1s_A Iron(II) transport prot 96.7 0.001 3.4E-08 55.2 3.4 23 11-33 7-29 (258)
455 1zbd_A Rabphilin-3A; G protein 96.7 0.00096 3.3E-08 52.2 3.1 23 11-33 10-32 (203)
456 3uk6_A RUVB-like 2; hexameric 96.7 0.00086 2.9E-08 57.7 3.1 28 8-35 69-96 (368)
457 1z06_A RAS-related protein RAB 96.7 0.001 3.5E-08 51.6 3.2 23 11-33 22-44 (189)
458 3dz8_A RAS-related protein RAB 96.7 0.00094 3.2E-08 51.9 3.0 23 11-33 25-47 (191)
459 3d3q_A TRNA delta(2)-isopenten 96.7 0.00098 3.4E-08 57.8 3.4 25 10-34 8-32 (340)
460 3cbq_A GTP-binding protein REM 96.6 0.00064 2.2E-08 53.5 2.0 22 11-32 25-46 (195)
461 1x3s_A RAS-related protein RAB 96.6 0.001 3.5E-08 51.4 3.1 23 11-33 17-39 (195)
462 2a5j_A RAS-related protein RAB 96.6 0.001 3.5E-08 51.7 3.1 23 11-33 23-45 (191)
463 3bwd_D RAC-like GTP-binding pr 96.6 0.0011 3.6E-08 50.7 3.1 23 11-33 10-32 (182)
464 2ocp_A DGK, deoxyguanosine kin 96.6 0.0011 3.6E-08 54.1 3.3 27 8-34 1-27 (241)
465 1tue_A Replication protein E1; 96.6 0.00078 2.7E-08 54.5 2.4 28 6-33 55-82 (212)
466 1zd9_A ADP-ribosylation factor 96.6 0.0011 3.6E-08 51.6 3.1 24 10-33 23-46 (188)
467 3crm_A TRNA delta(2)-isopenten 96.6 0.0011 3.7E-08 57.1 3.5 25 10-34 6-30 (323)
468 2atv_A RERG, RAS-like estrogen 96.6 0.0011 3.7E-08 51.8 3.2 24 10-33 29-52 (196)
469 2bcg_Y Protein YP2, GTP-bindin 96.6 0.001 3.4E-08 52.3 3.0 23 11-33 10-32 (206)
470 1ofh_A ATP-dependent HSL prote 96.6 0.00082 2.8E-08 56.2 2.6 26 9-34 50-75 (310)
471 4tmk_A Protein (thymidylate ki 96.6 0.0012 4.2E-08 53.3 3.6 29 8-36 2-30 (213)
472 3i8s_A Ferrous iron transport 96.6 0.0011 3.7E-08 55.4 3.3 23 11-33 5-27 (274)
473 3reg_A RHO-like small GTPase; 96.6 0.0011 3.8E-08 51.5 3.1 23 11-33 25-47 (194)
474 2p5s_A RAS and EF-hand domain 96.6 0.0011 3.8E-08 51.9 3.1 23 11-33 30-52 (199)
475 1p5z_B DCK, deoxycytidine kina 96.6 0.00071 2.4E-08 56.0 2.1 28 6-33 21-48 (263)
476 2qmh_A HPR kinase/phosphorylas 96.6 0.0011 3.6E-08 53.4 3.0 27 7-33 32-58 (205)
477 3cph_A RAS-related protein SEC 96.6 0.0011 3.9E-08 52.1 3.1 24 10-33 21-44 (213)
478 2ew1_A RAS-related protein RAB 96.6 0.0011 3.7E-08 52.6 3.0 23 11-33 28-50 (201)
479 1zj6_A ADP-ribosylation factor 96.6 0.0012 4.1E-08 51.0 3.2 24 9-32 16-39 (187)
480 1jwy_B Dynamin A GTPase domain 96.6 0.0011 3.8E-08 55.9 3.2 23 11-33 26-48 (315)
481 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0027 9.2E-08 60.3 6.2 27 8-34 206-232 (758)
482 2iwr_A Centaurin gamma 1; ANK 96.6 0.0009 3.1E-08 51.1 2.4 23 11-33 9-31 (178)
483 2o52_A RAS-related protein RAB 96.6 0.0011 3.6E-08 52.2 2.9 23 11-33 27-49 (200)
484 3hws_A ATP-dependent CLP prote 96.6 0.001 3.5E-08 57.6 3.1 27 8-34 50-76 (363)
485 2r44_A Uncharacterized protein 96.6 0.00052 1.8E-08 58.5 1.1 30 6-35 43-72 (331)
486 2il1_A RAB12; G-protein, GDP, 96.6 0.00099 3.4E-08 52.0 2.5 23 11-33 28-50 (192)
487 3c5c_A RAS-like protein 12; GD 96.5 0.0013 4.5E-08 51.1 3.2 23 11-33 23-45 (187)
488 1gwn_A RHO-related GTP-binding 96.5 0.0012 4.2E-08 52.4 3.0 23 11-33 30-52 (205)
489 2h17_A ADP-ribosylation factor 96.5 0.0012 3.9E-08 50.9 2.8 24 10-33 22-45 (181)
490 2f7s_A C25KG, RAS-related prot 96.5 0.0013 4.3E-08 52.2 3.1 23 11-33 27-49 (217)
491 4dhe_A Probable GTP-binding pr 96.5 0.00072 2.5E-08 53.8 1.6 24 10-33 30-53 (223)
492 2fv8_A H6, RHO-related GTP-bin 96.5 0.0013 4.4E-08 51.9 3.1 23 11-33 27-49 (207)
493 2gno_A DNA polymerase III, gam 96.5 0.015 5.1E-07 49.4 9.9 23 10-32 19-41 (305)
494 2hf9_A Probable hydrogenase ni 96.5 0.0014 4.8E-08 52.3 3.3 26 10-35 39-64 (226)
495 2h57_A ADP-ribosylation factor 96.5 0.00095 3.3E-08 51.8 2.2 24 10-33 22-45 (190)
496 4bas_A ADP-ribosylation factor 96.5 0.0011 3.8E-08 51.4 2.6 24 10-33 18-41 (199)
497 3t5d_A Septin-7; GTP-binding p 96.5 0.0012 4E-08 55.0 2.7 23 11-33 10-32 (274)
498 3ld9_A DTMP kinase, thymidylat 96.5 0.0016 5.6E-08 53.1 3.5 29 7-35 19-47 (223)
499 2qu8_A Putative nucleolar GTP- 96.5 0.0014 4.8E-08 52.7 3.1 24 10-33 30-53 (228)
500 2q3h_A RAS homolog gene family 96.5 0.0014 4.8E-08 51.2 3.0 24 10-33 21-44 (201)
No 1
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.98 E-value=2.6e-32 Score=241.83 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=118.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-----------------EcCCCcccCCCCcccchh----
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-----------------VDTSNEIGGDGDIPHSAI---- 61 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-----------------~~~~~~~~~~~~~~~~~~---- 61 (224)
+-.|++||+++|+||||||||||+|+|+|+++|+ .|.|.+ +.|...+.....+.++..
T Consensus 23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~-~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~ 101 (381)
T 3rlf_A 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT-SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK 101 (381)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHH
T ss_pred EEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC-CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHH
Confidence 3478999999999999999999999999999987 566554 333222211111111110
Q ss_pred --------------hHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------HHHHHH-
Q 027390 62 --------------GTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIA- 109 (224)
Q Consensus 62 --------------~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~~~~~~- 109 (224)
...+.+++ .|+||+||++||+||+.+|++|||||||++||.. .++++.
T Consensus 102 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~ 181 (381)
T 3rlf_A 102 LAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (381)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH
Confidence 01122332 3799999999999999999999999999999954 344554
Q ss_pred HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027390 110 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 110 ~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
+.|.|+|++||+++++..+||+++ ++++|+++..++++.++..+.......|
T Consensus 182 ~~g~tii~vTHd~~ea~~~aDri~--vl~~G~i~~~g~~~~l~~~p~~~~v~~~ 233 (381)
T 3rlf_A 182 RLGRTMIYVTHDQVEAMTLADKIV--VLDAGRVAQVGKPLELYHYPADRFVAGF 233 (381)
T ss_dssp HHCCEEEEECSCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHCCSBHHHHHH
T ss_pred hCCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEEeCHHHHHhCCccHHHHHh
Confidence 449999999999999999999997 6677889999999998876655555544
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.98 E-value=2.6e-32 Score=240.53 Aligned_cols=150 Identities=12% Similarity=0.118 Sum_probs=112.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE----------------------cCCCcccCCCCcccch
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV----------------------DTSNEIGGDGDIPHSA 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~----------------------~~~~~~~~~~~~~~~~ 60 (224)
+-.|++||+++|+||||||||||+|+|+|+++|+ .|.|.+. .|...+.....+.++.
T Consensus 48 sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~-~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env 126 (366)
T 3tui_C 48 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNV 126 (366)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHH
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHH
Confidence 3468999999999999999999999999999987 5665543 2222111111111110
Q ss_pred h------------------hHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------HH
Q 027390 61 I------------------GTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------AC 105 (224)
Q Consensus 61 ~------------------~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~~ 105 (224)
. ...+.+++ .|+||+||++||+||+.+|++|||||||++||+. .+
T Consensus 127 ~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL 206 (366)
T 3tui_C 127 ALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206 (366)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 0 01122222 3799999999999999999999999999999964 34
Q ss_pred HHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHh
Q 027390 106 RSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 155 (224)
Q Consensus 106 ~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~ 155 (224)
+++++ .|.|||++||+++++..+||+++ ++.+|+++..++++..+..+
T Consensus 207 ~~l~~~~g~Tii~vTHdl~~~~~~aDrv~--vl~~G~iv~~g~~~ev~~~p 255 (366)
T 3tui_C 207 KDINRRLGLTILLITHEMDVVKRICDCVA--VISNGELIEQDTVSEVFSHP 255 (366)
T ss_dssp HHHHHHSCCEEEEEESCHHHHHHHCSEEE--EEETTEEEECCBHHHHHSSC
T ss_pred HHHHHhCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCC
Confidence 45554 49999999999999999999997 56678899999988876543
No 3
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.97 E-value=3.9e-32 Score=231.76 Aligned_cols=148 Identities=16% Similarity=0.219 Sum_probs=110.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc---------------------CCCcc-cCCCCcccch
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD---------------------TSNEI-GGDGDIPHSA 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~---------------------~~~~~-~~~~~~~~~~ 60 (224)
+-.|++||+++|+||||||||||+|+|+|+++|+ .|.|.+.+ |.... .+...+.++.
T Consensus 28 sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~-~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l 106 (275)
T 3gfo_A 28 NMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS-SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDV 106 (275)
T ss_dssp EEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHH
Confidence 3478999999999999999999999999999987 56665432 22110 0000000000
Q ss_pred ------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027390 61 ------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 61 ------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
....+.+++ .|+||+||++||+||+.+|++|||||||++||+.. +
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l 186 (275)
T 3gfo_A 107 SFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186 (275)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 001122332 37999999999999999999999999999999543 4
Q ss_pred HHHH-HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027390 106 RSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 106 ~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
++++ ++|.|||++||+++++..+||+++ ++.+|+++..++++..+.
T Consensus 187 ~~l~~~~g~tvi~vtHdl~~~~~~~drv~--~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 187 VEMQKELGITIIIATHDIDIVPLYCDNVF--VMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHHHCCEEEEEESCCSSGGGGCSEEE--EEETTEEEEEECHHHHTH
T ss_pred HHHHhhCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEECCHHHHhc
Confidence 5555 559999999999999999999997 556688899998887654
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.97 E-value=8.4e-32 Score=237.02 Aligned_cols=152 Identities=13% Similarity=0.116 Sum_probs=112.6
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc---------------------CCCcccCCCCcccch-
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD---------------------TSNEIGGDGDIPHSA- 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~---------------------~~~~~~~~~~~~~~~- 60 (224)
+-.|++||+++|+||||||||||+|+|+|+++|+ .|.|.+.+ |...+.....+.++.
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~-~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~ 102 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIA 102 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS-EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHH
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC-CcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHH
Confidence 3478999999999999999999999999999987 56665422 111111100000000
Q ss_pred -----------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027390 61 -----------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 61 -----------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
....+.+++ .|+|||||++||+||+.+|++|||||||++||... +.
T Consensus 103 ~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~ 182 (359)
T 3fvq_A 103 YGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMI 182 (359)
T ss_dssp TTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 001122222 37999999999999999999999999999999643 22
Q ss_pred HH-HHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhH
Q 027390 107 SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQK 157 (224)
Q Consensus 107 ~~-~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~ 157 (224)
++ ++.|.|+|++||+++++..+||+++ ++++|+++..++++.++..+..
T Consensus 183 ~~~~~~g~tvi~vTHd~~ea~~~aDri~--vl~~G~i~~~g~~~el~~~p~~ 232 (359)
T 3fvq_A 183 AALRANGKSAVFVSHDREEALQYADRIA--VMKQGRILQTASPHELYRQPAD 232 (359)
T ss_dssp HHHHHTTCEEEEECCCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHSCSC
T ss_pred HHHHhCCCEEEEEeCCHHHHHHHCCEEE--EEECCEEEEEeCHHHHHhCccc
Confidence 33 3569999999999999999999997 5667889999999988765543
No 5
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.97 E-value=2.1e-31 Score=234.33 Aligned_cols=151 Identities=18% Similarity=0.196 Sum_probs=112.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------CCCcccCCCCcccch-----
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------TSNEIGGDGDIPHSA----- 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------~~~~~~~~~~~~~~~----- 60 (224)
+-.+++||+++|+||||||||||||+|+|+++|+ .|.|.+.+ |...+.....+.++.
T Consensus 35 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~ 113 (355)
T 1z47_A 35 SFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT-KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLR 113 (355)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHH
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 3468999999999999999999999999999987 56665422 211111110110110
Q ss_pred -------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH
Q 027390 61 -------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE 110 (224)
Q Consensus 61 -------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~ 110 (224)
....+.+++ .|+||+||++||+||+.+|++|||||||++||... ++++.+
T Consensus 114 ~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 193 (355)
T 1z47_A 114 EKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD 193 (355)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 001222333 37999999999999999999999999999999643 344543
Q ss_pred -cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhh
Q 027390 111 -RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 156 (224)
Q Consensus 111 -~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~ 156 (224)
.|.|+|++||+.+++..+||+++ ++++|+++..++++.++..+.
T Consensus 194 ~~g~tvi~vTHd~~~a~~~adri~--vl~~G~i~~~g~~~~l~~~p~ 238 (355)
T 1z47_A 194 EMGVTSVFVTHDQEEALEVADRVL--VLHEGNVEQFGTPEEVYEKPG 238 (355)
T ss_dssp HHTCEEEEECSCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHSCS
T ss_pred hcCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCcc
Confidence 48999999999999999999997 556688889999988876543
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.97 E-value=3.7e-31 Score=224.40 Aligned_cols=148 Identities=14% Similarity=0.238 Sum_probs=108.9
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc---------------------CCCcccCCCCcccch-
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD---------------------TSNEIGGDGDIPHSA- 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~---------------------~~~~~~~~~~~~~~~- 60 (224)
+-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+.+ |...+.....+.++.
T Consensus 44 sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~-~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~ 122 (263)
T 2olj_A 44 NVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD-EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNIT 122 (263)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHH
T ss_pred EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC-CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHH
Confidence 3468999999999999999999999999999987 56665432 211111000000000
Q ss_pred ------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------HH
Q 027390 61 ------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------AC 105 (224)
Q Consensus 61 ------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~~ 105 (224)
....+.+++ .|+||+||++||+|++.+|++|||||||++||+. .+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l 202 (263)
T 2olj_A 123 LAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVM 202 (263)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 001122332 3799999999999999999999999999999954 34
Q ss_pred HHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027390 106 RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 106 ~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
++++++|.|||++||+++++..+||+++ ++.+|+++..++++....
T Consensus 203 ~~l~~~g~tvi~vtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 203 KQLANEGMTMVVVTHEMGFAREVGDRVL--FMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHCSEEE--EEETTEEEEEECHHHHHH
T ss_pred HHHHhCCCEEEEEcCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHh
Confidence 4555668999999999999999999997 456678888888876653
No 7
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=3.2e-31 Score=233.79 Aligned_cols=158 Identities=15% Similarity=0.179 Sum_probs=115.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-----------------cCCCcccCCCCcccch-----
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-----------------DTSNEIGGDGDIPHSA----- 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~~----- 60 (224)
+-.+++|++++|+||||||||||||+|+|+++|+ .|.|.+. .|...+.....+.++.
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 101 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT-SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLE 101 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 3468999999999999999999999999999987 5666542 2222111111111110
Q ss_pred -------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH
Q 027390 61 -------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE 110 (224)
Q Consensus 61 -------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~ 110 (224)
....+.+++ .|+||+||++||+||+.+|++|||||||++||... ++++.+
T Consensus 102 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (362)
T 2it1_A 102 LRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK 181 (362)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH
Confidence 011233333 37999999999999999999999999999999643 344543
Q ss_pred -cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027390 111 -RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 111 -~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
.|.|+|++||+.+++..+||+++ ++++|+++..++++.++..+.......|
T Consensus 182 ~~g~tvi~vTHd~~~a~~~adri~--vl~~G~i~~~g~~~~~~~~p~~~~~~~~ 233 (362)
T 2it1_A 182 ELGITTVYVTHDQAEALAMADRIA--VIREGEILQVGTPDEVYYKPKYKFVGGF 233 (362)
T ss_dssp HHTCEEEEEESCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHSCSBHHHHHH
T ss_pred hCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCccchHHHHH
Confidence 48999999999999999999997 5566888999999988765543333343
No 8
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.97 E-value=2.8e-31 Score=233.98 Aligned_cols=157 Identities=15% Similarity=0.192 Sum_probs=115.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-----------------EcCCCcccCCCCcccch------
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-----------------VDTSNEIGGDGDIPHSA------ 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-----------------~~~~~~~~~~~~~~~~~------ 60 (224)
-.+++|++++|+||||||||||||+|+|+++|+ .|.|.+ +.|...+.....+.++.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~ 102 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT-SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRA 102 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC-ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHh
Confidence 468999999999999999999999999999987 466554 22222111110000000
Q ss_pred ------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-
Q 027390 61 ------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE- 110 (224)
Q Consensus 61 ------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~- 110 (224)
....+.+++ .|+||+||++||+||+.+|++|||||||++||... ++++.+
T Consensus 103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 182 (359)
T 2yyz_A 103 RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE 182 (359)
T ss_dssp SCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 011223333 37999999999999999999999999999999643 344443
Q ss_pred cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027390 111 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 111 ~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
.|.|+|++||+.+++..+||+++ ++++|+++..++++.++..+.......|
T Consensus 183 ~g~tvi~vTHd~~~~~~~adri~--vl~~G~i~~~g~~~~l~~~p~~~~~~~~ 233 (359)
T 2yyz_A 183 LGITSVYVTHDQAEAMTMASRIA--VFNQGKLVQYGTPDEVYDSPKNMFVASF 233 (359)
T ss_dssp HCCEEEEEESCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHSCSBHHHHHH
T ss_pred cCCEEEEEcCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhCcccHHHHHH
Confidence 48999999999999999999997 5566888999999988765543433444
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=5.7e-31 Score=222.42 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=108.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE------------------cCCCcccCCCCcccch----
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV------------------DTSNEIGGDGDIPHSA---- 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~------------------~~~~~~~~~~~~~~~~---- 60 (224)
+-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+. .|...+.....+.++.
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~-~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~ 113 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS-SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVA 113 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHH
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHH
Confidence 3468999999999999999999999999999987 4665542 2222111110000000
Q ss_pred --------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH
Q 027390 61 --------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA 109 (224)
Q Consensus 61 --------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~ 109 (224)
....+.+++ .|+||+||++||+|++.+|++|||||||++||+.. +.+++
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 114 GFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 001122232 47999999999999999999999999999999543 44555
Q ss_pred HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027390 110 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 110 ~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++|.|||++||+++++..+||+++ ++.+|+++..++++...
T Consensus 194 ~~g~tiiivtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 194 QEGLTILVSSHNMLEVEFLCDRIA--LIHNGTIVETGTVEELK 234 (256)
T ss_dssp HTTCEEEEEECCHHHHTTTCSEEE--EEETTEEEEEEEHHHHH
T ss_pred hCCCEEEEEcCCHHHHHHHCCEEE--EEECCEEEEecCHHHHH
Confidence 668999999999998999999997 45567788777776654
No 10
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.97 E-value=7.2e-31 Score=232.47 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=114.7
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-----------------------cCCCcccCCCCcccc
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-----------------------DTSNEIGGDGDIPHS 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-----------------------~~~~~~~~~~~~~~~ 59 (224)
+-.+++|++++|+||||||||||||+|+|+++|+ .|.|.+. .|...+.....+.++
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~en 101 (372)
T 1g29_1 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS-RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDN 101 (372)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS-EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHH
T ss_pred EEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC-ccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHH
Confidence 3468999999999999999999999999999987 5666542 111111111011011
Q ss_pred hh------------------hHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------
Q 027390 60 AI------------------GTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------- 104 (224)
Q Consensus 60 ~~------------------~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------- 104 (224)
.. ...+.+++ .|+||+||++||+||+.+|++|||||||++||...
T Consensus 102 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 181 (372)
T 1g29_1 102 IAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE 181 (372)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHH
Confidence 00 01122222 37999999999999999999999999999999643
Q ss_pred HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027390 105 CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 105 ~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
++++.+ .|.|+|++||+.+++..+||+++ ++++|+++..++++.++..+.......|
T Consensus 182 l~~l~~~~g~tvi~vTHd~~~a~~~adri~--vl~~G~i~~~g~~~~l~~~p~~~~~~~~ 239 (372)
T 1g29_1 182 LKKLQRQLGVTTIYVTHDQVEAMTMGDRIA--VMNRGVLQQVGSPDEVYDKPANTFVAGF 239 (372)
T ss_dssp HHHHHHHHTCEEEEEESCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHSCSBHHHHHH
T ss_pred HHHHHHhcCCEEEEECCCHHHHHHhCCEEE--EEeCCEEEEeCCHHHHHhCcccHHHHHH
Confidence 344543 48999999999999999999997 5566888999999988765543333343
No 11
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.97 E-value=4.4e-31 Score=232.45 Aligned_cols=151 Identities=17% Similarity=0.141 Sum_probs=111.6
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE----------------------cCCCcccCCCCcccch
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV----------------------DTSNEIGGDGDIPHSA 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~----------------------~~~~~~~~~~~~~~~~ 60 (224)
+-.+++|++++|+||||||||||||+|+|+++|+ .|.|.+. .|...+.....+.++.
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 103 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENI 103 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS-EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHH
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHH
Confidence 3468999999999999999999999999999987 4655442 2221111110000000
Q ss_pred ------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------HH
Q 027390 61 ------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------AC 105 (224)
Q Consensus 61 ------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~~ 105 (224)
....+.+++ .|+||+||++||+||+.+|++|||||||++||.. .+
T Consensus 104 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 183 (353)
T 1oxx_K 104 AFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183 (353)
T ss_dssp HGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 011223333 3799999999999999999999999999999943 34
Q ss_pred HHHH-HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhh
Q 027390 106 RSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 156 (224)
Q Consensus 106 ~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~ 156 (224)
+++. +.|.|+|++||+.+++..+||+++ ++++|+++..++++..+..+.
T Consensus 184 ~~l~~~~g~tvi~vTHd~~~~~~~adri~--vl~~G~i~~~g~~~~l~~~p~ 233 (353)
T 1oxx_K 184 KEVQSRLGVTLLVVSHDPADIFAIADRVG--VLVKGKLVQVGKPEDLYDNPV 233 (353)
T ss_dssp HHHHHHHCCEEEEEESCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHSCS
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCcc
Confidence 4554 348999999999999999999997 556688899999988876543
No 12
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=4.1e-31 Score=233.92 Aligned_cols=158 Identities=17% Similarity=0.195 Sum_probs=114.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-----------------EcCCCcccCCCCcccc------
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-----------------VDTSNEIGGDGDIPHS------ 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-----------------~~~~~~~~~~~~~~~~------ 59 (224)
+-.+++|++++|+||||||||||||+|+|+++|+ .|.|.+ +.|...++....+.++
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 109 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT-EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLK 109 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 3468999999999999999999999999999987 466554 2222211111000000
Q ss_pred ------------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH
Q 027390 60 ------------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE 110 (224)
Q Consensus 60 ------------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~ 110 (224)
.....+.+++ .|+||+||++||+||+.+|++|||||||++||... ++++.+
T Consensus 110 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 189 (372)
T 1v43_A 110 IKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 189 (372)
T ss_dssp --CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 0011222332 47999999999999999999999999999999643 344543
Q ss_pred -cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027390 111 -RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 111 -~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
.|.|+|++||+.+++..+||+++ ++++|+++..++++.++..+.......|
T Consensus 190 ~~g~tvi~vTHd~~~a~~~adri~--vl~~G~i~~~g~~~~l~~~p~~~~~a~~ 241 (372)
T 1v43_A 190 KLKVTTIYVTHDQVEAMTMGDRIA--VMNRGQLLQIGSPTEVYLRPNSVFVATF 241 (372)
T ss_dssp HHTCEEEEEESCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHCCSBHHHHHH
T ss_pred hCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhCcccHHHHHH
Confidence 48999999999999999999997 5566888999999988765544444444
No 13
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.97 E-value=8.2e-31 Score=222.59 Aligned_cols=147 Identities=16% Similarity=0.210 Sum_probs=109.7
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCCCCcccc----
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGDGDIPHS---- 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~~~~~~~---- 59 (224)
+-.+++||+++|+||||||||||+|+|+|+++|+ .|.|.+.+ |...+.+...+.++
T Consensus 31 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (266)
T 4g1u_C 31 SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS-HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMG 109 (266)
T ss_dssp EEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS-SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGG
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhh
Confidence 3468999999999999999999999999999998 67776532 11111111000000
Q ss_pred ------------hhhHHhHcCC----------CCccHHHHHHHHHHHhc------CCCEEEEeCCCChHhHHH-------
Q 027390 60 ------------AIGTARRMQV----------PEPSLQHKVMIEAVENH------MPEVIIVDEIGTEAEAHA------- 104 (224)
Q Consensus 60 ------------~~~~~~~~~~----------~~~g~~qr~~la~al~~------~p~llilDEp~~~lD~~~------- 104 (224)
.....+.+++ .|+||+||++||+||+. +|++|||||||++||+..
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~ 189 (266)
T 4g1u_C 110 RAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRL 189 (266)
T ss_dssp GTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHH
Confidence 0011222332 37999999999999999 999999999999999543
Q ss_pred HHHHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027390 105 CRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 ~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+++++++ ++|||++||+++++..+||+++ ++++|+++..++++...
T Consensus 190 l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~--vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 190 LRQLTRQEPLAVCCVLHDLNLAALYADRIM--LLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHHHHHHSSEEEEEECSCHHHHHHHCSEEE--EEETTEEEEEECHHHHC
T ss_pred HHHHHHcCCCEEEEEEcCHHHHHHhCCEEE--EEECCEEEEEcCHHHHh
Confidence 4455554 5799999999999999999997 55668889888888764
No 14
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.97 E-value=9.8e-31 Score=229.69 Aligned_cols=163 Identities=13% Similarity=0.202 Sum_probs=117.9
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------CCCcccCCCCcccch-----
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------TSNEIGGDGDIPHSA----- 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------~~~~~~~~~~~~~~~----- 60 (224)
+-.+++|++++|+||||||||||||+|+|+++|+ .|.|.+.+ |...++....+.++.
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~ 98 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMR 98 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS-EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC-CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 3468999999999999999999999999999987 56665532 221111110111110
Q ss_pred ----------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-cC
Q 027390 61 ----------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RG 112 (224)
Q Consensus 61 ----------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~-~g 112 (224)
....+.+++ .|+||+||++||+||+.+|++|||||||++||... ++++.+ .|
T Consensus 99 ~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g 178 (348)
T 3d31_A 99 MKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK 178 (348)
T ss_dssp HHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcC
Confidence 011223333 37999999999999999999999999999999643 344543 48
Q ss_pred CEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc-CCCce
Q 027390 113 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK-APPTF 168 (224)
Q Consensus 113 ~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~ 168 (224)
.|+|++||+.+++..+||+++ ++++|+++..++++..+..+.......| +..++
T Consensus 179 ~tii~vTHd~~~~~~~adri~--vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g~~n~ 233 (348)
T 3d31_A 179 LTVLHITHDQTEARIMADRIA--VVMDGKLIQVGKPEEIFEKPVEGRVASFVGFENV 233 (348)
T ss_dssp CEEEEEESCHHHHHHHCSEEE--EESSSCEEEEECHHHHHSSCCTTHHHHHHCSCEE
T ss_pred CEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhCcccHHHHHhcCCcee
Confidence 999999999999999999997 5667888999999888765433333333 55554
No 15
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.97 E-value=5e-31 Score=220.06 Aligned_cols=142 Identities=14% Similarity=0.135 Sum_probs=101.4
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-----------------------EcCCCcccCCCCcccc
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-----------------------VDTSNEIGGDGDIPHS 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-----------------------~~~~~~~~~~~~~~~~ 59 (224)
+-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+ +.|...+.....+.++
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~en 103 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT-EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALEN 103 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHH
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHH
Confidence 3468999999999999999999999999999987 455543 3333222111010000
Q ss_pred h---------------------hhHHhHcC-----------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---
Q 027390 60 A---------------------IGTARRMQ-----------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 104 (224)
Q Consensus 60 ~---------------------~~~~~~~~-----------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~--- 104 (224)
. ....+.++ -.|+||+||++||+|++.+|++|||||||++||+..
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~ 183 (235)
T 3tif_A 104 VELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183 (235)
T ss_dssp HHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 0 00111222 237999999999999999999999999999999543
Q ss_pred ----HHHHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCH
Q 027390 105 ----CRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 148 (224)
Q Consensus 105 ----~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~ 148 (224)
+++++++ |.|||++||+++.+ .+||+++ ++++|+++..++.
T Consensus 184 i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~--~l~~G~i~~~~~~ 229 (235)
T 3tif_A 184 IMQLLKKLNEEDGKTVVVVTHDINVA-RFGERII--YLKDGEVEREEKL 229 (235)
T ss_dssp HHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEE--EEETTEEEEEEEC
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEE--EEECCEEEEEcCh
Confidence 4455544 99999999999854 7899997 4555677665443
No 16
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=9.7e-31 Score=221.65 Aligned_cols=148 Identities=16% Similarity=0.207 Sum_probs=108.6
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE--------------------------------cCCCcc
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV--------------------------------DTSNEI 50 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~--------------------------------~~~~~~ 50 (224)
+-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+. .|...+
T Consensus 26 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 104 (262)
T 1b0u_A 26 SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS-EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 104 (262)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCccc
Confidence 3468999999999999999999999999999987 5666542 221111
Q ss_pred cCCCCcccch-------------------hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChH
Q 027390 51 GGDGDIPHSA-------------------IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 100 (224)
Q Consensus 51 ~~~~~~~~~~-------------------~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~l 100 (224)
.....+.++. ....+.+++ .|+||+||++||+|++.+|++|||||||++|
T Consensus 105 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~L 184 (262)
T 1b0u_A 105 WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 184 (262)
T ss_dssp CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTS
T ss_pred CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 1000000000 001122222 4799999999999999999999999999999
Q ss_pred hHH-------HHHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027390 101 EAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 101 D~~-------~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
|+. .+++++++|.|||++||+++++..+||+++ ++.+|+++..++++....
T Consensus 185 D~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 185 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI--FLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEE--EEETTEEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHh
Confidence 964 344555668999999999999999999997 456678888888876653
No 17
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.97 E-value=9.1e-31 Score=216.99 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=100.8
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-----------------------cCCCcccCCCCcccc
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-----------------------DTSNEIGGDGDIPHS 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-----------------------~~~~~~~~~~~~~~~ 59 (224)
+-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+. .|...+.....+.++
T Consensus 24 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~ 102 (224)
T 2pcj_A 24 SLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT-EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALEN 102 (224)
T ss_dssp EEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS-EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHH
Confidence 3468999999999999999999999999999987 4665542 222111110000000
Q ss_pred h------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------H
Q 027390 60 A------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------A 104 (224)
Q Consensus 60 ~------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~ 104 (224)
. ....+.+++ .|+||+||++||+|++.+|++|||||||++||+. .
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~ 182 (224)
T 2pcj_A 103 VIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182 (224)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 0 001223333 3699999999999999999999999999999964 3
Q ss_pred HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcC
Q 027390 105 CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 146 (224)
Q Consensus 105 ~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~ 146 (224)
+.+++++|.|||++||+.+++ .+||+++ ++.+|+++..+
T Consensus 183 l~~l~~~g~tvi~vtHd~~~~-~~~d~v~--~l~~G~i~~~g 221 (224)
T 2pcj_A 183 FLKINEGGTSIVMVTHERELA-ELTHRTL--EMKDGKVVGEI 221 (224)
T ss_dssp HHHHHHTTCEEEEECSCHHHH-TTSSEEE--EEETTEEEEEE
T ss_pred HHHHHHCCCEEEEEcCCHHHH-HhCCEEE--EEECCEEEEEe
Confidence 445555689999999999877 7899997 44556666543
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=1.7e-30 Score=217.51 Aligned_cols=147 Identities=14% Similarity=0.133 Sum_probs=106.9
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE--------------------EcCCCcccCCCCc------
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--------------------VDTSNEIGGDGDI------ 56 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~--------------------~~~~~~~~~~~~~------ 56 (224)
+-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+ +.|...+.....+
T Consensus 26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~ 104 (240)
T 1ji0_A 26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ-KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMM 104 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHG
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHH
Confidence 3468999999999999999999999999999887 455443 3332211110000
Q ss_pred ------cc-ch----hhHHhHc-----------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHH
Q 027390 57 ------PH-SA----IGTARRM-----------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRS 107 (224)
Q Consensus 57 ------~~-~~----~~~~~~~-----------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~ 107 (224)
.. .. ....+.+ .-.|+||+||++||+|++.+|++|||||||++||+.. +++
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 184 (240)
T 1ji0_A 105 GAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK 184 (240)
T ss_dssp GGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 00 00 0011112 1247999999999999999999999999999999643 445
Q ss_pred HHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027390 108 IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 108 ~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++++|.|||++||+++++..+||+++ ++.+|+++..++++...
T Consensus 185 ~~~~g~tvi~vtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 185 INQEGTTILLVEQNALGALKVAHYGY--VLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHTTCCEEEEESCHHHHHHHCSEEE--EEETTEEEEEEEHHHHH
T ss_pred HHHCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEEcCHHHHh
Confidence 55578999999999988889999997 44567788777776654
No 19
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.97 E-value=1.4e-30 Score=220.00 Aligned_cols=145 Identities=16% Similarity=0.156 Sum_probs=106.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE--------------------cCCCcccCC---------
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV--------------------DTSNEIGGD--------- 53 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~--------------------~~~~~~~~~--------- 53 (224)
+-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+. .|...+...
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 105 (257)
T 1g6h_A 27 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLI 105 (257)
T ss_dssp CCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHG
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHH
Confidence 4478999999999999999999999999999987 4665542 222111100
Q ss_pred C-Cc----------------ccc-----hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHh
Q 027390 54 G-DI----------------PHS-----AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 101 (224)
Q Consensus 54 ~-~~----------------~~~-----~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD 101 (224)
. .. ... .....+.+++ .|+||+||++||+|++.+|++|||||||++||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD 185 (257)
T 1g6h_A 106 GEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 185 (257)
T ss_dssp GGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCC
T ss_pred HHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 0 00 000 0001222332 36999999999999999999999999999999
Q ss_pred HHH-------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHH
Q 027390 102 AHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 150 (224)
Q Consensus 102 ~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~ 150 (224)
+.. +++++++|.|||++||+++++..+||+++ ++.+|+++..++++.
T Consensus 186 ~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 186 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLY--VMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEE--EEETTEEEEEEESHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEEeCHHH
Confidence 643 44555668999999999998989999997 445577777776665
No 20
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.97 E-value=2.8e-30 Score=217.83 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=108.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCe------EEEEcCCCcccCCCCcc-----------------cc
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR------VVIVDTSNEIGGDGDIP-----------------HS 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~------i~~~~~~~~~~~~~~~~-----------------~~ 59 (224)
+-.|++|++++|+||||||||||+|+|+|+++|+ .|. +.|+.|...+.....+. ..
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 103 (253)
T 2nq2_C 25 NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI-QGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKS 103 (253)
T ss_dssp EEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS-EEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCH
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCH
Confidence 3468999999999999999999999999999987 454 45666654332211100 00
Q ss_pred -----hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHc-CCEEE
Q 027390 60 -----AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAER-GVMLI 116 (224)
Q Consensus 60 -----~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~-g~tvi 116 (224)
.....+.+++ .|+||+||++||+|++.+|++|||||||++||+.. +.+++++ |.|||
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi 183 (253)
T 2nq2_C 104 HDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183 (253)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEE
T ss_pred HHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 0011223332 37999999999999999999999999999999643 3445555 89999
Q ss_pred EEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027390 117 GTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 117 ~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++||+.+++..+||+++. + .+|+ +..++++...
T Consensus 184 ~vtHd~~~~~~~~d~v~~-l-~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 184 FTTHQPNQVVAIANKTLL-L-NKQN-FKFGETRNIL 216 (253)
T ss_dssp EEESCHHHHHHHCSEEEE-E-ETTE-EEEEEHHHHC
T ss_pred EEecCHHHHHHhCCEEEE-E-eCCe-EecCCHHHHh
Confidence 999999989899999974 4 4456 7777766543
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.97 E-value=5e-30 Score=214.71 Aligned_cols=147 Identities=14% Similarity=0.199 Sum_probs=107.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC--------CcccCCCC----ccc-----c------
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS--------NEIGGDGD----IPH-----S------ 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~--------~~~~~~~~----~~~-----~------ 59 (224)
+-.+++ ++++|+||||||||||+|+|+|+++|+ .|.|.+.+.+ ..+++... ++. +
T Consensus 19 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~ 96 (240)
T 2onk_A 19 DFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR 96 (240)
T ss_dssp EEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCT
T ss_pred EEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHH
Confidence 346889 999999999999999999999999987 5777653211 01111100 000 0
Q ss_pred ----------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-c
Q 027390 60 ----------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-R 111 (224)
Q Consensus 60 ----------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~-~ 111 (224)
.....+.+++ .|+||+||++||+|++.+|++|||||||++||+.. +.++++ .
T Consensus 97 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~ 176 (240)
T 2onk_A 97 NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF 176 (240)
T ss_dssp TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 0001222333 36999999999999999999999999999999643 344543 4
Q ss_pred CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027390 112 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 112 g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
|.|||++||+++++..+||+++ ++++|+++..++++....
T Consensus 177 g~tvi~vtHd~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 177 DVPILHVTHDLIEAAMLADEVA--VMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp TCCEEEEESCHHHHHHHCSEEE--EEETTEEEEEECHHHHHH
T ss_pred CCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHh
Confidence 8999999999998899999997 455677888888776553
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.96 E-value=9.6e-30 Score=215.96 Aligned_cols=147 Identities=16% Similarity=0.167 Sum_probs=107.4
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE----------------EEcCCC-cccCCC-----------
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV----------------IVDTSN-EIGGDG----------- 54 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~----------------~~~~~~-~~~~~~----------- 54 (224)
+-.+++|++++|+||||||||||+|+|+|+++|+ .|.|. |+.|.. ......
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~-~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 105 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT-SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVK 105 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTT
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHH
Confidence 3468999999999999999999999999999887 45543 444432 111100
Q ss_pred C-ccc-c----hhhHHhHcCC------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH
Q 027390 55 D-IPH-S----AIGTARRMQV------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA 109 (224)
Q Consensus 55 ~-~~~-~----~~~~~~~~~~------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~ 109 (224)
. ... . .....+.+++ .|+||+||++||+||+.+|++|||||||++||+.. +++++
T Consensus 106 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 185 (266)
T 2yz2_A 106 NFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185 (266)
T ss_dssp TTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 0 010 0 0111222332 36999999999999999999999999999999643 44555
Q ss_pred HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027390 110 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 110 ~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++|.|||++||+++++..+||+++ ++++|+++..++++...
T Consensus 186 ~~g~tii~vtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~ 226 (266)
T 2yz2_A 186 TLGKTVILISHDIETVINHVDRVV--VLEKGKKVFDGTRMEFL 226 (266)
T ss_dssp HTTCEEEEECSCCTTTGGGCSEEE--EEETTEEEEEEEHHHHH
T ss_pred HcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHh
Confidence 568999999999998888999997 44557777777776654
No 23
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.96 E-value=1.1e-29 Score=213.77 Aligned_cols=146 Identities=15% Similarity=0.189 Sum_probs=107.4
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCCCCccc-----
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGDGDIPH----- 58 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~~~~~~----- 58 (224)
+-.+++|++++|+||||||||||+|+|+|+++|+ |.|.+ +.|...+.....+.+
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 97 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK--GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLH 97 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHh
Confidence 3468999999999999999999999999999886 55543 333222111100000
Q ss_pred --------chhhHHhHcCC----------CCccHHHHHHHHHHHhcCCC-------EEEEeCCCChHhHHH-------HH
Q 027390 59 --------SAIGTARRMQV----------PEPSLQHKVMIEAVENHMPE-------VIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 59 --------~~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~-------llilDEp~~~lD~~~-------~~ 106 (224)
......+.+++ .|+||+||++||+|++.+|+ +|||||||++||... ++
T Consensus 98 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~ 177 (249)
T 2qi9_C 98 QHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILS 177 (249)
T ss_dssp CSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHH
T ss_pred hccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHH
Confidence 00111223333 47999999999999999999 999999999999643 44
Q ss_pred HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027390 107 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 107 ~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++.++|.|||++||+.+++..+||+++ ++++|+++..++++...
T Consensus 178 ~l~~~g~tviivtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 178 ALSQQGLAIVMSSHDLNHTLRHAHRAW--LLKGGKMLASGRREEVL 221 (249)
T ss_dssp HHHHTTCEEEEECSCHHHHHHHCSEEE--EEETTEEEEEEEHHHHS
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHh
Confidence 555568999999999998889999997 44567788777776654
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.96 E-value=4.9e-30 Score=219.21 Aligned_cols=147 Identities=20% Similarity=0.157 Sum_probs=107.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC------------cccC---------CC--Ccccc
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN------------EIGG---------DG--DIPHS 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~------------~~~~---------~~--~~~~~ 59 (224)
+-.|++|++++|+||||||||||+|+|+|+++|+ .|.|.+.+..- .+++ .. .+.++
T Consensus 41 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~en 119 (279)
T 2ihy_A 41 SWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT-SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDV 119 (279)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHH
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHH
Confidence 3468999999999999999999999999999987 56665532110 0100 00 00000
Q ss_pred ----------------------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---
Q 027390 60 ----------------------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 104 (224)
Q Consensus 60 ----------------------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~--- 104 (224)
.....+.+++ .|+||+||++||+|++.+|++|||||||++||...
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~ 199 (279)
T 2ihy_A 120 VISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARES 199 (279)
T ss_dssp HHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHH
T ss_pred HHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHH
Confidence 0011222333 37999999999999999999999999999999543
Q ss_pred ----HHHHHHcCCEE--EEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027390 105 ----CRSIAERGVML--IGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 ----~~~~~~~g~tv--i~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+++++++|.|| |++||+++++..+||+++ ++.+|+++..++++...
T Consensus 200 l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 200 LLSILDSLSDSYPTLAMIYVTHFIEEITANFSKIL--LLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp HHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEE--EEETTEEEEEEEHHHHC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEE--EEECCEEEEECCHHHHh
Confidence 44555558999 999999998888999997 45667788877776543
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.96 E-value=2e-29 Score=211.83 Aligned_cols=144 Identities=22% Similarity=0.224 Sum_probs=104.7
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCCCCcccc----
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGDGDIPHS---- 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~~~~~~~---- 59 (224)
+-.|++|++++|+||||||||||+|+|+|+++|+ .|.|.+ +.|...+.. ..+.++
T Consensus 29 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~ 106 (247)
T 2ff7_A 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLA 106 (247)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhcc
Confidence 3468999999999999999999999999999987 455544 333221111 000000
Q ss_pred --------hhh---------HHhH------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH------
Q 027390 60 --------AIG---------TARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------ 104 (224)
Q Consensus 60 --------~~~---------~~~~------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------ 104 (224)
... ...+ ..-.|+||+||++||+|++.+|++|||||||++||...
T Consensus 107 ~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~ 186 (247)
T 2ff7_A 107 NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186 (247)
T ss_dssp CTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 000 0111 13458999999999999999999999999999999643
Q ss_pred -HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027390 105 -CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 -~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++++ .+|.|||++||+++.+. .||+++ ++.+|+++..++++...
T Consensus 187 ~l~~~-~~g~tviivtH~~~~~~-~~d~v~--~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 187 NMHKI-CKGRTVIIIAHRLSTVK-NADRII--VMEKGKIVEQGKHKELL 231 (247)
T ss_dssp HHHHH-HTTSEEEEECSSGGGGT-TSSEEE--EEETTEEEEEECHHHHH
T ss_pred HHHHH-cCCCEEEEEeCCHHHHH-hCCEEE--EEECCEEEEECCHHHHH
Confidence 3344 35899999999998776 499997 45567788888777654
No 26
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.96 E-value=3.9e-29 Score=209.52 Aligned_cols=146 Identities=15% Similarity=0.113 Sum_probs=105.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCC-----CCc--
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGD-----GDI-- 56 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~-----~~~-- 56 (224)
+-.|++|++++|+||||||||||+|+|+|+++|+ .|.|.+.+ |...+... ..+
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~ 100 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT-AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGL 100 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS-BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhc
Confidence 3468999999999999999999999999999987 57776532 11111000 000
Q ss_pred -c---cc-hhhHHhH---------------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhH-------H
Q 027390 57 -P---HS-AIGTARR---------------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------H 103 (224)
Q Consensus 57 -~---~~-~~~~~~~---------------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~-------~ 103 (224)
. .. .....+. ..-.|+||+||++||+|++.+|++|||||||++||. +
T Consensus 101 ~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~ 180 (243)
T 1mv5_A 101 EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180 (243)
T ss_dssp TSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHH
T ss_pred cCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence 0 00 0000001 123579999999999999999999999999999993 3
Q ss_pred HHHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027390 104 ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 104 ~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
.+.++. +|.|||++||+.+.+. .||+++ ++++|+++..++++....
T Consensus 181 ~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~--~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 181 ALDSLM-KGRTTLVIAHRLSTIV-DADKIY--FIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HHHHHH-TTSEEEEECCSHHHHH-HCSEEE--EEETTEECCCSCHHHHHH
T ss_pred HHHHhc-CCCEEEEEeCChHHHH-hCCEEE--EEECCEEEEeCCHHHHHh
Confidence 455555 5899999999998775 599997 445677777788776553
No 27
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.96 E-value=6.7e-29 Score=206.37 Aligned_cols=145 Identities=11% Similarity=0.042 Sum_probs=105.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeE------EEEcCCCcccCCCCcccc-----------hh----
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV------VIVDTSNEIGGDGDIPHS-----------AI---- 61 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i------~~~~~~~~~~~~~~~~~~-----------~~---- 61 (224)
+-.+++|++++|+||||||||||+|+|+|+++|+ .|.| .|+.|...+... .+.++ ..
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~ 105 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS-EGKIKHSGRISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIK 105 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEECSCEEEECSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC-ccEEEECCEEEEEecCCcccCC-CHHHHhhccCCcChHHHHHHHH
Confidence 3468999999999999999999999999999987 4544 455554433211 10000 00
Q ss_pred --h---HHhH------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHHHH-------HcCCEEEE
Q 027390 62 --G---TARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA-------ERGVMLIG 117 (224)
Q Consensus 62 --~---~~~~------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~~~-------~~g~tvi~ 117 (224)
. .... ..-.|+||+||++||+|++.+|++|||||||++||+.....+. ..+.|||+
T Consensus 106 ~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~ 185 (229)
T 2pze_A 106 ACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 185 (229)
T ss_dssp HTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEE
T ss_pred HhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 0 0001 1345899999999999999999999999999999976433221 23789999
Q ss_pred EEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027390 118 TAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 118 ~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+||+.+++. .||+++ ++.+|+++..++++...
T Consensus 186 vtH~~~~~~-~~d~v~--~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 186 VTSKMEHLK-KADKIL--ILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp ECCCHHHHH-HCSEEE--EEETTEEEEEECHHHHH
T ss_pred EcCChHHHH-hCCEEE--EEECCEEEEECCHHHHH
Confidence 999998775 599997 44557788887776654
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.96 E-value=4.3e-29 Score=212.53 Aligned_cols=147 Identities=16% Similarity=0.124 Sum_probs=104.9
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC----------
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD---------- 53 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~---------- 53 (224)
+-.|++|++++|+||||||||||+|+|+|+++|+ .|.|.+ +.|...+...
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~-~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~ 117 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT-GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL 117 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhc
Confidence 3468999999999999999999999999999987 455543 3332222110
Q ss_pred CCccc-c-hh---------hHHhH------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH------
Q 027390 54 GDIPH-S-AI---------GTARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------ 104 (224)
Q Consensus 54 ~~~~~-~-~~---------~~~~~------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------ 104 (224)
..... . .. ...+. ..-.|+||+||++||+||+.+|++|||||||++||...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~ 197 (271)
T 2ixe_A 118 TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197 (271)
T ss_dssp SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence 00000 0 00 00111 12357999999999999999999999999999999653
Q ss_pred -HHHHH-HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027390 105 -CRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 -~~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+.++. +.|.|||++||+++++. .||+++ ++.+|+++..++++....
T Consensus 198 ~l~~~~~~~g~tviivtHd~~~~~-~~d~v~--~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 198 LLYESPEWASRTVLLITQQLSLAE-RAHHIL--FLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp HHHHCTTTTTSEEEEECSCHHHHT-TCSEEE--EEETTEEEEEECHHHHHH
T ss_pred HHHHHHhhcCCEEEEEeCCHHHHH-hCCEEE--EEECCEEEEECCHHHHHh
Confidence 23333 24899999999998776 499997 455677888888776653
No 29
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.96 E-value=3.6e-29 Score=206.14 Aligned_cols=130 Identities=13% Similarity=0.173 Sum_probs=96.8
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE--------------EcCCCcccCCCCcccc---------
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--------------VDTSNEIGGDGDIPHS--------- 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~--------------~~~~~~~~~~~~~~~~--------- 59 (224)
+-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+ +.|...+.....+.++
T Consensus 29 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~-~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 107 (214)
T 1sgw_A 29 TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL-KGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG 107 (214)
T ss_dssp EEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC
Confidence 3468999999999999999999999999999987 455543 3333222111000000
Q ss_pred -------hhhHHhHcCC---------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhH-------HHHHHHHHcCCEEE
Q 027390 60 -------AIGTARRMQV---------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLI 116 (224)
Q Consensus 60 -------~~~~~~~~~~---------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~-------~~~~~~~~~g~tvi 116 (224)
.....+.+++ .|+||+||++||+|++.+|++|||||||++||+ +.+.+++++|.|||
T Consensus 108 ~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tii 187 (214)
T 1sgw_A 108 VKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187 (214)
T ss_dssp CCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEE
T ss_pred CchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 0111233333 379999999999999999999999999999994 33455555689999
Q ss_pred EEEeCcchHHhhcccee
Q 027390 117 GTAHGEWLENIIKNPIL 133 (224)
Q Consensus 117 ~~tH~~~~~~~~~d~v~ 133 (224)
++||+.+++..+||+++
T Consensus 188 ivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 188 ISSREELSYCDVNENLH 204 (214)
T ss_dssp EEESSCCTTSSEEEEGG
T ss_pred EEeCCHHHHHHhCCEEE
Confidence 99999998999999985
No 30
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.96 E-value=4.1e-29 Score=210.27 Aligned_cols=144 Identities=14% Similarity=0.135 Sum_probs=100.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhc--CCccCCCeEEEEcCC-----------CcccCCC----Ccc-----cch
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARV--LSDEFQKRVVIVDTS-----------NEIGGDG----DIP-----HSA 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~--l~~~~~~~i~~~~~~-----------~~~~~~~----~~~-----~~~ 60 (224)
+-.+++|++++|+||||||||||+|+|+|+ ++|+ .|.|.+.+.+ ..+++.. .++ ++.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~-~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 101 (250)
T 2d2e_A 23 NLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE-RGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFL 101 (250)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE-EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-ceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHH
Confidence 346899999999999999999999999998 6676 5776653211 0011100 000 000
Q ss_pred ---------------------hhHHhHc-----------CC-CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---
Q 027390 61 ---------------------IGTARRM-----------QV-PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 104 (224)
Q Consensus 61 ---------------------~~~~~~~-----------~~-~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~--- 104 (224)
....+.+ .- .|+||+||++||+||+.+|++|||||||++||...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~ 181 (250)
T 2d2e_A 102 RLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKV 181 (250)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHH
T ss_pred HHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHH
Confidence 0001111 22 57999999999999999999999999999999643
Q ss_pred ----HHHHHHcCCEEEEEEeCcchHHhh-ccceeeeccCCeeEEEcCCHH
Q 027390 105 ----CRSIAERGVMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEE 149 (224)
Q Consensus 105 ----~~~~~~~g~tvi~~tH~~~~~~~~-~d~v~~~l~~~~~~v~~~~~~ 149 (224)
+++++++|.|||++||+.+++..+ ||+++ ++++|+++..++++
T Consensus 182 l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~--~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 182 VARGVNAMRGPNFGALVITHYQRILNYIQPDKVH--VMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEE--EEETTEEEEEESHH
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEE--EEECCEEEEEeCHH
Confidence 344445689999999999988888 59997 45567788887776
No 31
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.96 E-value=1.7e-28 Score=204.96 Aligned_cols=147 Identities=13% Similarity=0.152 Sum_probs=105.8
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeE------EEEcCCCcccCC---------CCcccchh----h-
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV------VIVDTSNEIGGD---------GDIPHSAI----G- 62 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i------~~~~~~~~~~~~---------~~~~~~~~----~- 62 (224)
+-.|++|++++|+||||||||||+|+|+|+++|+ .|.| .|+.|...+... ........ .
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 103 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQA 103 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE-EEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHH
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHH
Confidence 3468999999999999999999999999999987 4554 455554332110 00000000 0
Q ss_pred --HH---------------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----HHH-----HcCCEEE
Q 027390 63 --TA---------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIA-----ERGVMLI 116 (224)
Q Consensus 63 --~~---------------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~~~-----~~g~tvi 116 (224)
.. +...-.|+||+||++||+|++.+|++|||||||++||+.... .+. .+|.|||
T Consensus 104 ~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tvi 183 (237)
T 2cbz_A 104 CALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRI 183 (237)
T ss_dssp TTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEE
T ss_pred HhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEE
Confidence 00 111235799999999999999999999999999999975422 221 2478999
Q ss_pred EEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027390 117 GTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 117 ~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
++||+.+++. .||+++ ++.+|+++..++++....
T Consensus 184 ivtH~~~~~~-~~d~v~--~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 184 LVTHSMSYLP-QVDVII--VMSGGKISEMGSYQELLA 217 (237)
T ss_dssp EECSCSTTGG-GSSEEE--EEETTEEEEEECHHHHHH
T ss_pred EEecChHHHH-hCCEEE--EEeCCEEEEeCCHHHHhh
Confidence 9999998775 699997 445677888888776543
No 32
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.96 E-value=9.4e-29 Score=213.67 Aligned_cols=145 Identities=19% Similarity=0.187 Sum_probs=106.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCCCCcccc----
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGDGDIPHS---- 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~~~~~~~---- 59 (224)
+-.|++|++++|+||||||||||+++|+|++.|+ .|.|.+ +.|...++. ..+.++
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~-~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~ 151 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS-SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYG 151 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS-EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTT
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC-CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhh
Confidence 3468999999999999999999999999999987 465544 333322211 000000
Q ss_pred --------hhhH---------HhHc------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH------
Q 027390 60 --------AIGT---------ARRM------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------ 104 (224)
Q Consensus 60 --------~~~~---------~~~~------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------ 104 (224)
.... ...+ .-.|+||+||++|||||+.+|++|||||||++||...
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~ 231 (306)
T 3nh6_A 152 RVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA 231 (306)
T ss_dssp STTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 0000 0111 2358999999999999999999999999999999643
Q ss_pred -HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027390 105 -CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 -~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+.++. .+.|+|++||+++.+.. ||+++ ++.+|+++..|+.+.+..
T Consensus 232 ~l~~l~-~~~Tvi~itH~l~~~~~-aD~i~--vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 232 SLAKVC-ANRTTIVVAHRLSTVVN-ADQIL--VIKDGCIVERGRHEALLS 277 (306)
T ss_dssp HHHHHH-TTSEEEEECCSHHHHHT-CSEEE--EEETTEEEEEECHHHHHH
T ss_pred HHHHHc-CCCEEEEEEcChHHHHc-CCEEE--EEECCEEEEECCHHHHHh
Confidence 23332 47899999999998865 99997 556688999999887664
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.95 E-value=2.3e-28 Score=206.86 Aligned_cols=145 Identities=17% Similarity=0.253 Sum_probs=103.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC--------CC
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD--------GD 55 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~--------~~ 55 (224)
+-.|++|++++|+||||||||||+|+|+|++++ .|.|.+ +.|...+... ..
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~ 117 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA--EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGK 117 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccC
Confidence 346899999999999999999999999999975 355544 3222211100 00
Q ss_pred --ccc-chhhHHh---------------------HcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------
Q 027390 56 --IPH-SAIGTAR---------------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------- 104 (224)
Q Consensus 56 --~~~-~~~~~~~---------------------~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------- 104 (224)
... ......+ +..-.|+||+||++||+|++.+|++|||||||++||+..
T Consensus 118 ~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ 197 (260)
T 2ghi_A 118 LDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA 197 (260)
T ss_dssp TTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH
Confidence 000 0000000 012358999999999999999999999999999999643
Q ss_pred HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027390 105 CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 ~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+.+++ ++.|||++||+++++. .||+++ ++++|+++..++++....
T Consensus 198 l~~l~-~~~tviivtH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 198 VEDLR-KNRTLIIIAHRLSTIS-SAESII--LLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp HHHHT-TTSEEEEECSSGGGST-TCSEEE--EEETTEEEEEECHHHHHH
T ss_pred HHHhc-CCCEEEEEcCCHHHHH-hCCEEE--EEECCEEEEECCHHHHHh
Confidence 33443 3789999999998775 599997 455678888888776653
No 34
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.95 E-value=5.8e-28 Score=207.37 Aligned_cols=145 Identities=11% Similarity=0.054 Sum_probs=106.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCe------EEEEcCCCcccCCCCcccch----------h-----
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR------VVIVDTSNEIGGDGDIPHSA----------I----- 61 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~------i~~~~~~~~~~~~~~~~~~~----------~----- 61 (224)
+-.|++|++++|+||||||||||+|+|+|+++|+ .|. +.|+.|...+... .+.++. .
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~-~G~I~~~g~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~ 135 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS-EGKIKHSGRISFCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIKA 135 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE-EEEEECCSCEEEECSSCCCCSS-BHHHHHHTTCCCHHHHHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCEEEEEeCCCccCcc-cHHHHhhCcccchHHHHHHHHH
Confidence 3468999999999999999999999999999987 444 4566665433211 110000 0
Q ss_pred -h---HHhH------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHHHH-------HcCCEEEEE
Q 027390 62 -G---TARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA-------ERGVMLIGT 118 (224)
Q Consensus 62 -~---~~~~------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~~~-------~~g~tvi~~ 118 (224)
+ .... ..-.|+||+||++||+|++.+|++|||||||++||......+. ..+.|||++
T Consensus 136 ~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviiv 215 (290)
T 2bbs_A 136 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 215 (290)
T ss_dssp TTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEE
T ss_pred hChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 0 0011 1346899999999999999999999999999999976543321 237899999
Q ss_pred EeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027390 119 AHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 119 tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
||+++++. .||+++ ++.+|+++..++++...
T Consensus 216 tHd~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 216 TSKMEHLK-KADKIL--ILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp CCCHHHHH-HSSEEE--EEETTEEEEEECHHHHH
T ss_pred ecCHHHHH-cCCEEE--EEECCeEEEeCCHHHHh
Confidence 99998775 599997 44567788888887654
No 35
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.95 E-value=1.4e-28 Score=208.88 Aligned_cols=146 Identities=16% Similarity=0.050 Sum_probs=102.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcC--CccCCCeEEE--------------------EcCCCcccCCCC-----
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQKRVVI--------------------VDTSNEIGGDGD----- 55 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l--~~~~~~~i~~--------------------~~~~~~~~~~~~----- 55 (224)
+-.|++|++++|+||||||||||+|+|+|++ +|+ .|.|.+ +.|...+.....
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~-~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~ 118 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT-GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFL 118 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE-EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-CeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHH
Confidence 3468999999999999999999999999994 455 455543 333221110000
Q ss_pred -c--------------cc-c----hhhHHhHc-----------C-CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH
Q 027390 56 -I--------------PH-S----AIGTARRM-----------Q-VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 103 (224)
Q Consensus 56 -~--------------~~-~----~~~~~~~~-----------~-~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~ 103 (224)
. .. . .....+.+ . -.|+||+||++||+||+.+|++|||||||++||..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~ 198 (267)
T 2zu0_C 119 QTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDID 198 (267)
T ss_dssp HHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHH
T ss_pred HHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Confidence 0 00 0 00001111 1 15799999999999999999999999999999965
Q ss_pred HH-------HHHHHcCCEEEEEEeCcchHHhh-ccceeeeccCCeeEEEcCCHHHH
Q 027390 104 AC-------RSIAERGVMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEEAR 151 (224)
Q Consensus 104 ~~-------~~~~~~g~tvi~~tH~~~~~~~~-~d~v~~~l~~~~~~v~~~~~~~~ 151 (224)
.. ++++++|.|||++||+++++..+ ||+++ ++.+|+++..++++..
T Consensus 199 ~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~ 252 (267)
T 2zu0_C 199 ALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVH--VLYQGRIVKSGDFTLV 252 (267)
T ss_dssp HHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEE--EEETTEEEEEECTTHH
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEE--EEECCEEEEEcCHHHH
Confidence 43 23334589999999999888776 89997 4456778887776654
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.95 E-value=1.1e-28 Score=219.69 Aligned_cols=154 Identities=11% Similarity=0.072 Sum_probs=111.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCCCCcccc-----
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGDGDIPHS----- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~~~~~~~----- 59 (224)
-.|++||+++|+||||||||||||+|+|+++ + .|.|.+.+ |...++.. .+.++
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~-~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~-tv~enl~~~~ 118 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSG-TFRKNLDPNA 118 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E-EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSE-EHHHHHCTTC
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C-CeEEEECCEECCcCChHHHhCCEEEEcCCcccCcc-CHHHHhhhcc
Confidence 4689999999999999999999999999987 4 46665533 22111100 00000
Q ss_pred ------hhhHHhHcC----------C-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHH----H
Q 027390 60 ------AIGTARRMQ----------V-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----I 108 (224)
Q Consensus 60 ------~~~~~~~~~----------~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~----~ 108 (224)
.....+.++ - .|+||+||++|||||+.+|++|||||||++||.....+ +
T Consensus 119 ~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l 198 (390)
T 3gd7_A 119 AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTL 198 (390)
T ss_dssp CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 000111111 1 58999999999999999999999999999999754332 2
Q ss_pred H--HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027390 109 A--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 109 ~--~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
+ ..+.|+|++||+++.. ..||+++ ++++|+++..+++..++..+.......|
T Consensus 199 ~~~~~~~tvi~vtHd~e~~-~~aDri~--vl~~G~i~~~g~~~el~~~p~~~~va~f 252 (390)
T 3gd7_A 199 KQAFADCTVILCEARIEAM-LECDQFL--VIEENKVRQYDSILELYHYPADRFVAGF 252 (390)
T ss_dssp HTTTTTSCEEEECSSSGGG-TTCSEEE--EEETTEEEEESSHHHHHHCCSBHHHHHH
T ss_pred HHHhCCCEEEEEEcCHHHH-HhCCEEE--EEECCEEEEECCHHHHHhCCCchHHHhh
Confidence 2 2478999999998644 5699997 6677889999999999877665555555
No 37
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=1.4e-27 Score=202.30 Aligned_cols=144 Identities=17% Similarity=0.149 Sum_probs=103.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC-------Cccc-CCC-------Ccccc---------
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-------NEIG-GDG-------DIPHS--------- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~-------~~~~-~~~-------~~~~~--------- 59 (224)
-.++ |++++|+||||||||||+|+|+|++ |+ .|.|.+.+.. ..++ +.. ...++
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~-~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~ 102 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY-SGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKG 102 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC-EEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTC
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC-CcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcc
Confidence 3688 9999999999999999999999999 87 5666553210 1122 110 00000
Q ss_pred -----hhhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHH----HHHcCCEEEEEE
Q 027390 60 -----AIGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTA 119 (224)
Q Consensus 60 -----~~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~----~~~~g~tvi~~t 119 (224)
.....+.+++ .|+||+||++||+|++.+|++|||||||++||...... +++...|||++|
T Consensus 103 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivt 182 (263)
T 2pjz_A 103 LDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVT 182 (263)
T ss_dssp CCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEE
T ss_pred hHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEE
Confidence 0011223333 36999999999999999999999999999999754332 333222999999
Q ss_pred eCcchHHhhcc-ceeeeccCCeeEEEcCCHHHHH
Q 027390 120 HGEWLENIIKN-PILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 120 H~~~~~~~~~d-~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
|+++++..+|| +++ ++++|+++..++++...
T Consensus 183 Hd~~~~~~~~d~~i~--~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 183 HELDMLNLYKEYKAY--FLVGNRLQGPISVSELL 214 (263)
T ss_dssp SCGGGGGGCTTSEEE--EEETTEEEEEEEHHHHH
T ss_pred cCHHHHHHhcCceEE--EEECCEEEEecCHHHHH
Confidence 99998888999 987 44557788887776654
No 38
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.1e-27 Score=220.83 Aligned_cols=148 Identities=14% Similarity=0.174 Sum_probs=107.8
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCC-----eEEEEcCCCcccCCCCcccch--------------hhHHhHc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDGDIPHSA--------------IGTARRM 67 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~-----~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 67 (224)
.+||+++|+||||||||||+|+|+|+++|+.+. .+.++.+.....+...+.+.. ....+.+
T Consensus 376 ~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l 455 (608)
T 3j16_B 376 SDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL 455 (608)
T ss_dssp CTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHH
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHc
Confidence 455999999999999999999999999988321 366665542211111100000 0011222
Q ss_pred ----------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------HHHHHH-HcCCEEEEEEeCcchHHhhc
Q 027390 68 ----------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIA-ERGVMLIGTAHGEWLENIIK 129 (224)
Q Consensus 68 ----------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~~~~~~-~~g~tvi~~tH~~~~~~~~~ 129 (224)
.-.||||+||++||++|+.+|++|||||||++||.. .++++. +.|.|||++||+++++..+|
T Consensus 456 ~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~a 535 (608)
T 3j16_B 456 RIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLA 535 (608)
T ss_dssp TSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred CChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 234799999999999999999999999999999954 344554 56999999999999999999
Q ss_pred cceeeeccC-CeeEEEcCCHHHHHHHh
Q 027390 130 NPILSDLIG-GVDTVTLGDEEARARRC 155 (224)
Q Consensus 130 d~v~~~l~~-~~~~v~~~~~~~~~~~~ 155 (224)
|+++. +.+ .++++..++|...+...
T Consensus 536 Drviv-l~~~~g~~~~~g~p~~~~~~~ 561 (608)
T 3j16_B 536 DKVIV-FEGIPSKNAHARAPESLLTGC 561 (608)
T ss_dssp SEEEE-CEEETTTEEECCCCEEHHHHH
T ss_pred CEEEE-EeCCCCeEEecCChHHHhhhh
Confidence 99975 443 25678888888777553
No 39
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.94 E-value=1.2e-26 Score=214.47 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=106.8
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCC------eEEEEcCCCcccCCCCcccchh--------------hHH
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------RVVIVDTSNEIGGDGDIPHSAI--------------GTA 64 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~------~i~~~~~~~~~~~~~~~~~~~~--------------~~~ 64 (224)
.|++||+++|+||||||||||+|+|+|+++|+ .| .+.|+.|.........+..... ...
T Consensus 308 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~-~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l 386 (538)
T 1yqt_A 308 EIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELL 386 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTSSCCS-BCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHH
Confidence 46899999999999999999999999999987 34 4567766543321111111000 001
Q ss_pred hHcC----------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH-HcCCEEEEEEeCcchHH
Q 027390 65 RRMQ----------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWLEN 126 (224)
Q Consensus 65 ~~~~----------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~-~~g~tvi~~tH~~~~~~ 126 (224)
+.++ -.|+||+||++||++|+.+|++|||||||++||... ++++. +.|.|||++||+++++.
T Consensus 387 ~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~ 466 (538)
T 1yqt_A 387 KPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID 466 (538)
T ss_dssp TTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHH
T ss_pred HHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 1122 247999999999999999999999999999999643 34444 45899999999999999
Q ss_pred hhccceeeeccC-CeeEEEcCCHHHHH
Q 027390 127 IIKNPILSDLIG-GVDTVTLGDEEARA 152 (224)
Q Consensus 127 ~~~d~v~~~l~~-~~~~v~~~~~~~~~ 152 (224)
.+||+++. +.+ .+.++..++++...
T Consensus 467 ~~~drv~v-l~~~~~~~~~~g~~~~~~ 492 (538)
T 1yqt_A 467 YVSDRLMV-FEGEPGKYGRALPPMGMR 492 (538)
T ss_dssp HHCSEEEE-EEEETTTEEEECCCEEHH
T ss_pred HhCCEEEE-EeCCcceEeecCCHHHHH
Confidence 99999975 443 14566677776654
No 40
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=1.1e-26 Score=214.57 Aligned_cols=129 Identities=17% Similarity=0.212 Sum_probs=95.0
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE-------EEcCCCcccCCCCcccch---------------hh
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------IVDTSNEIGGDGDIPHSA---------------IG 62 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~-------~~~~~~~~~~~~~~~~~~---------------~~ 62 (224)
.|++||+++|+||||||||||+|+|+|+++|+ .|.|. ++.+.........+.+.. ..
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~ 368 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEITAD-EGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEE 368 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCS-BCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHH
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHH
Confidence 47899999999999999999999999999998 46553 343321111100000000 00
Q ss_pred HHhH----------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH-HcCCEEEEEEeCcch
Q 027390 63 TARR----------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWL 124 (224)
Q Consensus 63 ~~~~----------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~-~~g~tvi~~tH~~~~ 124 (224)
..+. ..-.||||+||++||++|+.+|++|||||||++||... ++++. +.|.|||++||++++
T Consensus 369 ~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~ 448 (538)
T 3ozx_A 369 VTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI 448 (538)
T ss_dssp TTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 0111 12247999999999999999999999999999999643 44554 458999999999999
Q ss_pred HHhhccceee
Q 027390 125 ENIIKNPILS 134 (224)
Q Consensus 125 ~~~~~d~v~~ 134 (224)
+..+||+++.
T Consensus 449 ~~~~aDri~v 458 (538)
T 3ozx_A 449 HDYIADRIIV 458 (538)
T ss_dssp HHHHCSEEEE
T ss_pred HHHhCCEEEE
Confidence 9999999974
No 41
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.94 E-value=2.7e-26 Score=214.58 Aligned_cols=147 Identities=14% Similarity=0.143 Sum_probs=107.4
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCC------eEEEEcCCCcccCCCCcccch--------------hhHH
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------RVVIVDTSNEIGGDGDIPHSA--------------IGTA 64 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~------~i~~~~~~~~~~~~~~~~~~~--------------~~~~ 64 (224)
.|.+||+++|+||||||||||+|+|+|+++|+ .| .+.|+.|.........+.... ....
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~-~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l 456 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELL 456 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTSSCCS-BSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHH
Confidence 37899999999999999999999999999987 34 356676654332211111100 0011
Q ss_pred hHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH-HcCCEEEEEEeCcchHH
Q 027390 65 RRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWLEN 126 (224)
Q Consensus 65 ~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~-~~g~tvi~~tH~~~~~~ 126 (224)
+.+++ .|+||+||++||++|+.+|++|||||||++||... ++++. +.|.|||++||+++++.
T Consensus 457 ~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~ 536 (607)
T 3bk7_A 457 KPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID 536 (607)
T ss_dssp HHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred HHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22222 47999999999999999999999999999999643 34444 45899999999999999
Q ss_pred hhccceeeeccC-CeeEEEcCCHHHHHH
Q 027390 127 IIKNPILSDLIG-GVDTVTLGDEEARAR 153 (224)
Q Consensus 127 ~~~d~v~~~l~~-~~~~v~~~~~~~~~~ 153 (224)
.+||+++. +.+ .+..+..++++....
T Consensus 537 ~~adrv~v-l~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 537 YVSDRLIV-FEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHCSEEEE-EEEETTTEEEECCCEEHHH
T ss_pred HhCCEEEE-EcCCcceEEecCCHHHHHh
Confidence 99999974 432 144566677766553
No 42
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.94 E-value=2.9e-26 Score=211.85 Aligned_cols=129 Identities=17% Similarity=0.160 Sum_probs=93.8
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE--------EEcCC-------------CcccCC----CCccc-
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------IVDTS-------------NEIGGD----GDIPH- 58 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~--------~~~~~-------------~~~~~~----~~~~~- 58 (224)
.|++||+++|+||||||||||+|+|+|+++|+. |.+. .+... ..+... ...+.
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~-G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 121 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL-CGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKA 121 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT-TTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGG
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchh
Confidence 589999999999999999999999999998873 4420 00000 000000 00000
Q ss_pred ----------------chhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------HH
Q 027390 59 ----------------SAIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------AC 105 (224)
Q Consensus 59 ----------------~~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~~ 105 (224)
......+.+++ .|+||+||++||+||+.+|++|||||||++||+. .+
T Consensus 122 ~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L 201 (538)
T 1yqt_A 122 VKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAI 201 (538)
T ss_dssp CCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred hhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 00111223333 3799999999999999999999999999999965 34
Q ss_pred HHHHHcCCEEEEEEeCcchHHhhccceee
Q 027390 106 RSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 106 ~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
+++++.|.|||++||+++++..+||+++.
T Consensus 202 ~~l~~~g~tvi~vsHd~~~~~~~~dri~v 230 (538)
T 1yqt_A 202 RRLSEEGKSVLVVEHDLAVLDYLSDIIHV 230 (538)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 55666799999999999999999999974
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.93 E-value=3.9e-26 Score=213.41 Aligned_cols=144 Identities=15% Similarity=0.218 Sum_probs=106.4
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCCCCcccc-----
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGDGDIPHS----- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~~~~~~~----- 59 (224)
-.+++||+++|+||||||||||+++|+|+++|+ .|.|.+ +.|+..+... .+.++
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~-~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~ 453 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD-RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGN 453 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS-EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC-CeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCC
Confidence 368999999999999999999999999999987 455543 4443322210 11000
Q ss_pred -------hhhH---------HhH------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------
Q 027390 60 -------AIGT---------ARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------- 104 (224)
Q Consensus 60 -------~~~~---------~~~------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------- 104 (224)
.... ... -.-.|+||+||++||||++.+|++|||||||++||...
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~ 533 (598)
T 3qf4_B 454 PGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAA 533 (598)
T ss_dssp TTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 0000 011 12348999999999999999999999999999999643
Q ss_pred HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027390 105 CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 ~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+.++ .+|+|+|++||+++.... ||+++ ++++|+++..|++++...
T Consensus 534 l~~~-~~~~t~i~itH~l~~~~~-~d~i~--~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 534 MWKL-MEGKTSIIIAHRLNTIKN-ADLII--VLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHHH-HTTSEEEEESCCTTHHHH-CSEEE--EECSSSEEECSCHHHHHH
T ss_pred HHHH-cCCCEEEEEecCHHHHHc-CCEEE--EEECCEEEEECCHHHHHh
Confidence 2333 258999999999997764 99997 556788999999887654
No 44
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.93 E-value=3e-26 Score=213.42 Aligned_cols=144 Identities=19% Similarity=0.243 Sum_probs=105.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCCCCcccch----
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGDGDIPHSA---- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~~~~~~~~---- 60 (224)
-.+++||+++|+||||||||||+++|+|+++|+ .|.|.+ +.|+..+... .+.++.
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~ 439 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT-SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR 439 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS-EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCCCCC-CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC
Confidence 368999999999999999999999999999987 455543 3333322211 111110
Q ss_pred --------hhHH---------h------------HcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH------
Q 027390 61 --------IGTA---------R------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC------ 105 (224)
Q Consensus 61 --------~~~~---------~------------~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~------ 105 (224)
.... . +-.-.||||+||++||||++.+|++|||||||++||...-
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~ 519 (578)
T 4a82_A 440 PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 519 (578)
T ss_dssp SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH
Confidence 0000 0 1123479999999999999999999999999999996532
Q ss_pred -HHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027390 106 -RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 106 -~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+++ .+++|+|++||+++... .||+++ ++++|+++..|++++...
T Consensus 520 l~~~-~~~~t~i~itH~l~~~~-~~d~i~--~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 520 LDVL-SKDRTTLIVAHRLSTIT-HADKIV--VIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHH-TTTSEEEEECSSGGGTT-TCSEEE--EEETTEEEEEECHHHHHH
T ss_pred HHHH-cCCCEEEEEecCHHHHH-cCCEEE--EEECCEEEEECCHHHHHh
Confidence 222 34789999999998775 599997 556688999999887654
No 45
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.93 E-value=7.4e-26 Score=210.93 Aligned_cols=146 Identities=17% Similarity=0.224 Sum_probs=105.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC--------CC
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD--------GD 55 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~--------~~ 55 (224)
+-.+++||+++|+||||||||||+|+|+|+++|+ .|.|.+ +.|+..+... +.
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~ 441 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD-SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAA 441 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccC
Confidence 3468999999999999999999999999999987 566554 2222211110 00
Q ss_pred ---cccc-hhhHH---------hHc------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH------
Q 027390 56 ---IPHS-AIGTA---------RRM------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------ 104 (224)
Q Consensus 56 ---~~~~-~~~~~---------~~~------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------ 104 (224)
.... ..... +++ .-.|+||+||++||||++.+|++|||||||++||...
T Consensus 442 ~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~ 521 (582)
T 3b5x_A 442 EGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQA 521 (582)
T ss_pred CCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 0000 00001 111 2347999999999999999999999999999999653
Q ss_pred -HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027390 105 -CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 -~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
++++. +|+|+|++||+.+... .||+++ ++++|+++..|+.++...
T Consensus 522 ~l~~~~-~~~tvi~itH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 522 ALDELQ-KNKTVLVIAHRLSTIE-QADEIL--VVDEGEIIERGRHADLLA 567 (582)
T ss_pred HHHHHc-CCCEEEEEecCHHHHH-hCCEEE--EEECCEEEEECCHHHHHh
Confidence 23333 3899999999998775 699997 556678888888877653
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.93 E-value=7.2e-26 Score=211.71 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=93.8
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE--------EEcCCC-------------ccc----CCCCcc--
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------IVDTSN-------------EIG----GDGDIP-- 57 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~--------~~~~~~-------------~~~----~~~~~~-- 57 (224)
.+++||+++|+||||||||||+|+|+|+++|+. |.+. .+.... .+. .....+
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~-G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 191 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL-CEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKA 191 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCT-TTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCC-CccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhh
Confidence 589999999999999999999999999999873 4420 000000 000 000000
Q ss_pred ---------------cchhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------HH
Q 027390 58 ---------------HSAIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------AC 105 (224)
Q Consensus 58 ---------------~~~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~~ 105 (224)
.......+.+++ .|+||+||++||+||+.+|++|||||||++||.. .+
T Consensus 192 ~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L 271 (607)
T 3bk7_A 192 VKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI 271 (607)
T ss_dssp CCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred ccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 000111223333 3799999999999999999999999999999965 34
Q ss_pred HHHHHcCCEEEEEEeCcchHHhhccceee
Q 027390 106 RSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 106 ~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
+++++.|.|||++||+++++..+||+++.
T Consensus 272 ~~l~~~g~tvIivsHdl~~~~~~adri~v 300 (607)
T 3bk7_A 272 RRLANEGKAVLVVEHDLAVLDYLSDVIHV 300 (607)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred HHHHhcCCEEEEEecChHHHHhhCCEEEE
Confidence 55666699999999999999999999964
No 47
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.93 E-value=7e-26 Score=211.33 Aligned_cols=145 Identities=18% Similarity=0.249 Sum_probs=106.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC--------C--
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD--------G-- 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~--------~-- 54 (224)
-.+++||+++|+||||||||||+++|+|+++|+ .|.|.+ +.|+..+... +
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~-~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~ 442 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE-RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE 442 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS-EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC-CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCC
Confidence 368999999999999999999999999999987 566554 3333222110 0
Q ss_pred Cccc-chhhHH---------------------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH-------
Q 027390 55 DIPH-SAIGTA---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC------- 105 (224)
Q Consensus 55 ~~~~-~~~~~~---------------------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~------- 105 (224)
.... ...... ++..-.|+||+||++||||++.+|++|||||||++||...-
T Consensus 443 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l 522 (587)
T 3qf4_A 443 DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGL 522 (587)
T ss_dssp SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0000 000000 01112479999999999999999999999999999996532
Q ss_pred HHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027390 106 RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 106 ~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+++ .+++|+|++||+++... .||+++ ++++|+++..|+.++...
T Consensus 523 ~~~-~~~~tvi~itH~l~~~~-~~d~i~--vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 523 KRY-TKGCTTFIITQKIPTAL-LADKIL--VLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHH-STTCEEEEEESCHHHHT-TSSEEE--EEETTEEEEEECHHHHHH
T ss_pred HHh-CCCCEEEEEecChHHHH-hCCEEE--EEECCEEEEECCHHHHHh
Confidence 222 34899999999998765 899997 556688999999987664
No 48
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.93 E-value=6.1e-26 Score=211.49 Aligned_cols=145 Identities=16% Similarity=0.206 Sum_probs=105.1
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC--------CC-
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD--------GD- 55 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~--------~~- 55 (224)
-.+++||+++|+||||||||||+++|+|+++|+ .|.|.+ +.|+..+... ..
T Consensus 364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~ 442 (582)
T 3b60_A 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYDID-EGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART 442 (582)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS-EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC-CCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCC
Confidence 468999999999999999999999999999987 455543 3333222110 00
Q ss_pred --cccc-hhhHH---------hH------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------
Q 027390 56 --IPHS-AIGTA---------RR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------- 104 (224)
Q Consensus 56 --~~~~-~~~~~---------~~------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------- 104 (224)
.... ..... ++ ..-.|+||+||++||||++.+|++|||||||++||...
T Consensus 443 ~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~ 522 (582)
T 3b60_A 443 EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA 522 (582)
T ss_dssp SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHH
Confidence 0000 00000 11 12357999999999999999999999999999999643
Q ss_pred HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027390 105 CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 ~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
++++. +|+|+|++||+++... .||+++ ++++|+++..|++++...
T Consensus 523 l~~~~-~~~tvi~itH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 523 LDELQ-KNRTSLVIAHRLSTIE-QADEIV--VVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHHHH-TTSEEEEECSCGGGTT-TCSEEE--EEETTEEEEEECHHHHHH
T ss_pred HHHHh-CCCEEEEEeccHHHHH-hCCEEE--EEECCEEEEecCHHHHHH
Confidence 33333 3899999999998765 699997 456678888888877653
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.93 E-value=6.5e-26 Score=209.39 Aligned_cols=128 Identities=15% Similarity=0.123 Sum_probs=92.1
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE----------EEcCCC-----------c------ccCCCCcc
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV----------IVDTSN-----------E------IGGDGDIP 57 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~----------~~~~~~-----------~------~~~~~~~~ 57 (224)
.+++||+++|+||||||||||+|+|+|++.|+ .|.+. .+.... . ..+....+
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~-~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPN-FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSSCCC-TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 56799999999999999999999999999988 45541 000000 0 00000000
Q ss_pred c-----------------chhhHHhHcC----------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH------
Q 027390 58 H-----------------SAIGTARRMQ----------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------ 104 (224)
Q Consensus 58 ~-----------------~~~~~~~~~~----------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------ 104 (224)
. ......+.++ -.|+||+||++||+||+.+|++|||||||++||+..
T Consensus 100 ~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~ 179 (538)
T 3ozx_A 100 KFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK 179 (538)
T ss_dssp TTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred hhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 0 0001112222 247999999999999999999999999999999653
Q ss_pred -HHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027390 105 -CRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 105 -~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
++++++ |.|||++||+++++..+||+++.
T Consensus 180 ~l~~l~~-g~tii~vsHdl~~~~~~~d~i~v 209 (538)
T 3ozx_A 180 AIRELLK-NKYVIVVDHDLIVLDYLTDLIHI 209 (538)
T ss_dssp HHHHHCT-TSEEEEECSCHHHHHHHCSEEEE
T ss_pred HHHHHhC-CCEEEEEEeChHHHHhhCCEEEE
Confidence 344544 89999999999999999999963
No 50
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.93 E-value=5.6e-26 Score=212.23 Aligned_cols=144 Identities=16% Similarity=0.202 Sum_probs=102.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC----------C
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD----------G 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~----------~ 54 (224)
-.+++||+++|+||||||||||+++|+|+++|+ .|.|.+ +.|+..+... .
T Consensus 365 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~-~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~ 443 (595)
T 2yl4_A 365 LSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA-SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGAD 443 (595)
T ss_dssp EEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS-EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCC
Confidence 368999999999999999999999999999987 455543 3333222110 0
Q ss_pred C---cccc-hhhHHhHc---------------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-----
Q 027390 55 D---IPHS-AIGTARRM---------------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----- 104 (224)
Q Consensus 55 ~---~~~~-~~~~~~~~---------------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~----- 104 (224)
. .... .....+.. .-.|+||+||++||||++.+|++|||||||++||...
T Consensus 444 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~ 523 (595)
T 2yl4_A 444 DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQ 523 (595)
T ss_dssp STTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHH
T ss_pred CccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHH
Confidence 0 0000 00011111 2357999999999999999999999999999999653
Q ss_pred --HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027390 105 --CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 --~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++++.+ ++|+|++||+++... .||+++ ++++|+++..|++++..
T Consensus 524 ~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 524 EALDRLMD-GRTVLVIAHRLSTIK-NANMVA--VLDQGKITEYGKHEELL 569 (595)
T ss_dssp HHHHHHHT-TSEEEEECCCHHHHH-HSSEEE--EEETTEEEEEECSCC--
T ss_pred HHHHHHhc-CCEEEEEecCHHHHH-cCCEEE--EEECCEEEEECCHHHHH
Confidence 233333 799999999998775 599997 45667788877766543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1e-25 Score=210.57 Aligned_cols=129 Identities=16% Similarity=0.168 Sum_probs=93.8
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE----------EEcCCC-----------cc------cCCCCcc
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV----------IVDTSN-----------EI------GGDGDIP 57 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~----------~~~~~~-----------~~------~~~~~~~ 57 (224)
.+++|++++|+||||||||||+|+|+|+++|+ .|.+. ++.... .+ .+....+
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~-~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN-LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIP 177 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC-TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC-CceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhh
Confidence 57899999999999999999999999999998 46541 000000 00 0000000
Q ss_pred ----------------------cchhhHHhHc----------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027390 58 ----------------------HSAIGTARRM----------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 58 ----------------------~~~~~~~~~~----------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
.......+.+ .-.|+||+||++||+||+.+|++|||||||++||+..
T Consensus 178 ~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~ 257 (608)
T 3j16_B 178 RAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQR 257 (608)
T ss_dssp HHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHH
T ss_pred hhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHH
Confidence 0000011222 2347999999999999999999999999999999653
Q ss_pred ------HHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027390 105 ------CRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 105 ------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
+++++++|.|||++||+++++..+||+++.
T Consensus 258 ~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~v 293 (608)
T 3j16_B 258 LNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCI 293 (608)
T ss_dssp HHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 344556789999999999999999999974
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.91 E-value=3.6e-24 Score=202.45 Aligned_cols=82 Identities=16% Similarity=0.172 Sum_probs=68.8
Q ss_pred CCccHHHHHHHHHHHhcCCC--EEEEeCCCChHhH-------HHHHHHHHcCCEEEEEEeCcchHHhhccceeeec----
Q 027390 70 PEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL---- 136 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~~p~--llilDEp~~~lD~-------~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l---- 136 (224)
.|+||+||++||+||+.+|+ +|||||||++||+ +.+++++++|.|||++||+++++. .||+++. |
T Consensus 203 LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii~-l~~g~ 280 (670)
T 3ux8_A 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLID-IGPGA 280 (670)
T ss_dssp SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEEE-ECSSS
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEE-ecccc
Confidence 47999999999999999998 9999999999994 345566777999999999998765 5999974 4
Q ss_pred -cCCeeEEEcCCHHHHHH
Q 027390 137 -IGGVDTVTLGDEEARAR 153 (224)
Q Consensus 137 -~~~~~~v~~~~~~~~~~ 153 (224)
+++|+++..++++....
T Consensus 281 ~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 281 GIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp GGGCCSEEEEECHHHHHT
T ss_pred cccCCEEEEecCHHHHhc
Confidence 26678899988887654
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.90 E-value=3.5e-23 Score=200.98 Aligned_cols=148 Identities=16% Similarity=0.180 Sum_probs=102.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHh-cCC---ccCCCeEEEEcCCC-cccCCCCc-----------ccchhhHHhH
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIAR-VLS---DEFQKRVVIVDTSN-EIGGDGDI-----------PHSAIGTARR 66 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g-~l~---~~~~~~i~~~~~~~-~~~~~~~~-----------~~~~~~~~~~ 66 (224)
+-.+++|++++|+||||||||||+|+|+| .+. .....++.++.+.. ........ ........+.
T Consensus 455 sl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~ 534 (986)
T 2iw3_A 455 QLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIE 534 (986)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHH
Confidence 34689999999999999999999999994 221 10112355555432 11110000 0111111233
Q ss_pred cCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----HHHHcCCEEEEEEeCcchHHhhccc
Q 027390 67 MQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNP 131 (224)
Q Consensus 67 ~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~~~~~g~tvi~~tH~~~~~~~~~d~ 131 (224)
+++ .|+||+||++||++++.+|++|||||||++||..... .+.+.|.|+|++||++++...+||+
T Consensus 535 lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adr 614 (986)
T 2iw3_A 535 FGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEY 614 (986)
T ss_dssp TTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSE
T ss_pred cCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCE
Confidence 333 4799999999999999999999999999999975433 2344689999999999999999999
Q ss_pred eeeeccCCeeEE-EcCCHHHHH
Q 027390 132 ILSDLIGGVDTV-TLGDEEARA 152 (224)
Q Consensus 132 v~~~l~~~~~~v-~~~~~~~~~ 152 (224)
++. | .+|+++ ..|+.....
T Consensus 615 ii~-L-~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 615 IIN-Y-EGLKLRKYKGNFTEFV 634 (986)
T ss_dssp EEE-E-ETTEEEEEESCHHHHH
T ss_pred EEE-E-ECCeeecCCCCHHHHH
Confidence 974 4 456665 467776654
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.90 E-value=5.2e-24 Score=206.72 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=61.6
Q ss_pred CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHH----HHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEc
Q 027390 70 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 145 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~----~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~ 145 (224)
.||||+||++||++++.+|++|||||||++||...... +++.+.|||++||+++++..+||+++ ++.+|+++..
T Consensus 902 LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVi--vL~~G~Iv~~ 979 (986)
T 2iw3_A 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVW--AVKDGRMTPS 979 (986)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEE--CCBTTBCCC-
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEe
Confidence 57999999999999999999999999999999765433 34557899999999999999999997 4455665544
Q ss_pred C
Q 027390 146 G 146 (224)
Q Consensus 146 ~ 146 (224)
|
T Consensus 980 G 980 (986)
T 2iw3_A 980 G 980 (986)
T ss_dssp -
T ss_pred C
Confidence 3
No 55
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.90 E-value=8.5e-24 Score=211.92 Aligned_cols=147 Identities=18% Similarity=0.233 Sum_probs=106.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE-------------------EEcCCCcccCC--------CC
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IVDTSNEIGGD--------GD 55 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~-------------------~~~~~~~~~~~--------~~ 55 (224)
+-.|++||+++|+||||||||||+++|+|+++|+ .|.|. +++|+..+... +.
T Consensus 1053 sl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~ 1131 (1284)
T 3g5u_A 1053 SLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM-AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGD 1131 (1284)
T ss_dssp CEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS-EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCC
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccC
Confidence 3468999999999999999999999999999987 45544 34343322110 00
Q ss_pred ----ccc-chhhHH---------h------------HcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH---H
Q 027390 56 ----IPH-SAIGTA---------R------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC---R 106 (224)
Q Consensus 56 ----~~~-~~~~~~---------~------------~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~---~ 106 (224)
... ...... . +-.-.|||||||++||||++.+|++|||||||++||...- .
T Consensus 1132 ~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~ 1211 (1284)
T 3g5u_A 1132 NSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQ 1211 (1284)
T ss_dssp SSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 000 000000 0 0112479999999999999999999999999999996532 2
Q ss_pred H-H--HHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027390 107 S-I--AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 107 ~-~--~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+ + ...|+|+|++||+++.+. .||+++ ++++|+++..|+++....
T Consensus 1212 ~~l~~~~~~~tvi~isH~l~~i~-~~dri~--vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1212 EALDKAREGRTCIVIAHRLSTIQ-NADLIV--VIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHHHHSSSSCEEEECSCTTGGG-SCSEEE--EEETBEEEEEECHHHHHH
T ss_pred HHHHHhCCCCEEEEEecCHHHHH-cCCEEE--EEECCEEEEECCHHHHHh
Confidence 1 1 234889999999998775 599997 556788999999887654
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.89 E-value=1.4e-23 Score=210.28 Aligned_cols=145 Identities=17% Similarity=0.232 Sum_probs=106.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE-------------------EEcCCCcccCCCCcccch----
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IVDTSNEIGGDGDIPHSA---- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~-------------------~~~~~~~~~~~~~~~~~~---- 60 (224)
-.+++||+++|+||||||||||+++|+|++.|+ .|.|. ++.|+..+... .+.++.
T Consensus 411 l~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~-~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~ 488 (1284)
T 3g5u_A 411 LKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL-DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGR 488 (1284)
T ss_dssp EEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS-EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCC
Confidence 368999999999999999999999999999987 45544 44444333211 111110
Q ss_pred --------hhH---------HhHc------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH---HH-
Q 027390 61 --------IGT---------ARRM------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC---RS- 107 (224)
Q Consensus 61 --------~~~---------~~~~------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~---~~- 107 (224)
... ...+ .-.|||||||++||||+..+|++|||||||++||.+.- .+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~ 568 (1284)
T 3g5u_A 489 EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA 568 (1284)
T ss_dssp SSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 000 0111 12479999999999999999999999999999996532 11
Q ss_pred H--HHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027390 108 I--AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 108 ~--~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+ ..+|+|+|++||+++.... ||+++ ++++|+++..|+.++...
T Consensus 569 l~~~~~~~t~i~itH~l~~i~~-~d~i~--vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 569 LDKAREGRTTIVIAHRLSTVRN-ADVIA--GFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp HHHHHTTSEEEEECSCHHHHTT-CSEEE--ECSSSCCCCEECHHHHHH
T ss_pred HHHHcCCCEEEEEecCHHHHHc-CCEEE--EEECCEEEEECCHHHHHh
Confidence 1 2358999999999987764 99997 556678888888877654
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.89 E-value=2e-23 Score=197.30 Aligned_cols=81 Identities=19% Similarity=0.170 Sum_probs=67.5
Q ss_pred CCccHHHHHHHHHHHhcCC---CEEEEeCCCChHhHH-------HHHHHHHcCCEEEEEEeCcchHHhhccceeeecc--
Q 027390 70 PEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI-- 137 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~~p---~llilDEp~~~lD~~-------~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~-- 137 (224)
.|+||+||++||+||+.+| ++|||||||++||+. .++++++.|.|||++||+++++ ..||+++. |.
T Consensus 544 LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~i~~-l~~~ 621 (670)
T 3ux8_A 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIID-LGPE 621 (670)
T ss_dssp CCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEE-EESS
T ss_pred CCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH-HhCCEEEE-ecCC
Confidence 4799999999999999886 599999999999954 3456667799999999999876 46999973 31
Q ss_pred ---CCeeEEEcCCHHHHH
Q 027390 138 ---GGVDTVTLGDEEARA 152 (224)
Q Consensus 138 ---~~~~~v~~~~~~~~~ 152 (224)
++|+++..|+++.+.
T Consensus 622 ~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 622 GGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp SGGGCCEEEEEECHHHHH
T ss_pred cCCCCCEEEEecCHHHHH
Confidence 568899999988764
No 58
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.89 E-value=2.4e-24 Score=170.88 Aligned_cols=116 Identities=9% Similarity=0.113 Sum_probs=80.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHH------------HHHhcCCccCCCeEEEEcCCCcccCCCCcccch---hhH----
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMR------------EIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSA---IGT---- 63 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~------------~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~---- 63 (224)
+-.+++|++++|+||||||||||+| .+.|++.++. +...+.. ...... ...
T Consensus 3 sl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~ 72 (171)
T 4gp7_A 3 KLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDE-NDQTVTG---------AAFDVLHYIVSKRLQL 72 (171)
T ss_dssp EEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSST-TCGGGHH---------HHHHHHHHHHHHHHHT
T ss_pred cccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcc-cchhhHH---------HHHHHHHHHHHHHHhC
Confidence 4478999999999999999999999 5666555431 1100000 000000 000
Q ss_pred -----HhHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH----------------H-------HHHHHHcCCEE
Q 027390 64 -----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH----------------A-------CRSIAERGVML 115 (224)
Q Consensus 64 -----~~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~----------------~-------~~~~~~~g~tv 115 (224)
.......++|++||+++|+++..+|++|+|||||++||.. . +.+++++|.|+
T Consensus 73 g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tv 152 (171)
T 4gp7_A 73 GKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRY 152 (171)
T ss_dssp TCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSE
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcE
Confidence 0112234689999999999999999999999999999965 2 12245569999
Q ss_pred EEEEeCcchHHhh
Q 027390 116 IGTAHGEWLENII 128 (224)
Q Consensus 116 i~~tH~~~~~~~~ 128 (224)
|++||+++++..+
T Consensus 153 i~vtH~~~~~~~~ 165 (171)
T 4gp7_A 153 VYILNSPEEVEEV 165 (171)
T ss_dssp EEEECSHHHHHHE
T ss_pred EEEeCCHHHhhhh
Confidence 9999999877643
No 59
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.89 E-value=5.2e-23 Score=206.75 Aligned_cols=147 Identities=16% Similarity=0.220 Sum_probs=107.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC--------C-
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD--------G- 54 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~--------~- 54 (224)
+-.|++||.++|+||+|||||||+++|.|++.|+ .|.|.+ ++|++.++.. +
T Consensus 1099 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gl 1177 (1321)
T 4f4c_A 1099 SFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL-GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGL 1177 (1321)
T ss_dssp EEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS-SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSS
T ss_pred eEEECCCCEEEEECCCCChHHHHHHHHhcCccCC-CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccC
Confidence 3468999999999999999999999999999987 566654 3343322210 0
Q ss_pred ---Cccc-chhhHHhHc---------------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---HH
Q 027390 55 ---DIPH-SAIGTARRM---------------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CR 106 (224)
Q Consensus 55 ---~~~~-~~~~~~~~~---------------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~---~~ 106 (224)
.... +....++.. .-.|+|||||++||||++.+|++|||||||++||.+. ++
T Consensus 1178 d~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq 1257 (1321)
T 4f4c_A 1178 DPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQ 1257 (1321)
T ss_dssp CTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHH
Confidence 0000 111111111 1136999999999999999999999999999999543 33
Q ss_pred H-HHH--cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027390 107 S-IAE--RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 107 ~-~~~--~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+ +.+ +++|+|+++|.++-+ ..||+|+ ++++|++++.|+++++..
T Consensus 1258 ~~l~~~~~~~TvI~IAHRLsTi-~~aD~I~--Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1258 EALDRAREGRTCIVIAHRLNTV-MNADCIA--VVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HHHTTTSSSSEEEEECSSSSTT-TTCSEEE--EESSSSEEEEECHHHHHH
T ss_pred HHHHHHcCCCEEEEeccCHHHH-HhCCEEE--EEECCEEEEECCHHHHHh
Confidence 3 332 478999999998754 4699998 667789999999998764
No 60
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.87 E-value=2.1e-22 Score=202.40 Aligned_cols=145 Identities=17% Similarity=0.251 Sum_probs=105.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeE-------------------EEEcCCCcccCC----------C
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV-------------------VIVDTSNEIGGD----------G 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i-------------------~~~~~~~~~~~~----------~ 54 (224)
-.+++|+.++|+||+|||||||++.|.|++.|+ .|.| .|+.|.+.++.. .
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~-~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~ 517 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL-KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE 517 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS-EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhccccccc-cCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc
Confidence 368999999999999999999999999999987 4554 445554433210 0
Q ss_pred Cccc-chhhHH---------hHc------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH---HHHH-H
Q 027390 55 DIPH-SAIGTA---------RRM------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH---ACRS-I 108 (224)
Q Consensus 55 ~~~~-~~~~~~---------~~~------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~---~~~~-~ 108 (224)
.... ...... ..+ .-.|||||||++||||+..+|++|||||||++||.+ .+.+ +
T Consensus 518 ~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l 597 (1321)
T 4f4c_A 518 GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQAL 597 (1321)
T ss_dssp TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHH
T ss_pred cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHH
Confidence 0111 111111 111 123799999999999999999999999999999943 1221 2
Q ss_pred H--HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027390 109 A--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 109 ~--~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
. .+++|+|++||..+.. ..||+++ ++++|+++..|+.+++.
T Consensus 598 ~~~~~~~T~iiiaHrls~i-~~aD~Ii--vl~~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 598 DKAAKGRTTIIIAHRLSTI-RNADLII--SCKNGQVVEVGDHRALM 640 (1321)
T ss_dssp HHHHTTSEEEEECSCTTTT-TTCSEEE--EEETTEEEEEECHHHHH
T ss_pred HHHhCCCEEEEEcccHHHH-HhCCEEE--EeeCCeeeccCCHHHHH
Confidence 1 2489999999999855 5799997 55678899998887754
No 61
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.85 E-value=6.4e-22 Score=179.56 Aligned_cols=145 Identities=14% Similarity=0.048 Sum_probs=101.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCC-e-EEEEcC-CCcccCCC------------Ccccchh-------
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-R-VVIVDT-SNEIGGDG------------DIPHSAI------- 61 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~-~-i~~~~~-~~~~~~~~------------~~~~~~~------- 61 (224)
-.+++|++++|+||||||||||+|+|+|++.|+ +| . +.+... ...+++.. ....+.+
T Consensus 133 l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~-~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~ 211 (460)
T 2npi_A 133 MSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF-NAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSG 211 (460)
T ss_dssp HHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH-HCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSS
T ss_pred eEeCCCCEEEEECCCCCCHHHHHHHHhCccccc-CCceeEEEcCCccCCeeeeccchhhcccccccchhhhhcccccccC
Confidence 357899999999999999999999999999887 56 6 554321 11111000 0000000
Q ss_pred --------hHHhHcCC--------CCccHHHHHHHHHH--HhcCCCE----EEEeC-CCChHhHH--HHHHH-HHcCCEE
Q 027390 62 --------GTARRMQV--------PEPSLQHKVMIEAV--ENHMPEV----IIVDE-IGTEAEAH--ACRSI-AERGVML 115 (224)
Q Consensus 62 --------~~~~~~~~--------~~~g~~qr~~la~a--l~~~p~l----lilDE-p~~~lD~~--~~~~~-~~~g~tv 115 (224)
...+.+++ .|+||+||+++|++ |+.+|++ ||||| ||++||.. .+.++ .+.+.|+
T Consensus 212 ~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tv 291 (460)
T 2npi_A 212 ATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNI 291 (460)
T ss_dssp CCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCE
T ss_pred cchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhCCCE
Confidence 00111122 25899999999999 9999999 99999 99999953 34444 3458899
Q ss_pred EEEEeCcc------hHHhhccc-----eeeeccCCeeEEEcCCHHHH
Q 027390 116 IGTAHGEW------LENIIKNP-----ILSDLIGGVDTVTLGDEEAR 151 (224)
Q Consensus 116 i~~tH~~~------~~~~~~d~-----v~~~l~~~~~~v~~~~~~~~ 151 (224)
|+++|+.+ ++..+||+ ++. |..+|+++ .+++..+
T Consensus 292 iiVth~~~~~l~~~~~~~~~dr~~~~~vi~-l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 292 MLVLCSETDPLWEKVKKTFGPELGNNNIFF-IPKLDGVS-AVDDVYK 336 (460)
T ss_dssp EEEECCSSCTHHHHHHHHHHHHHCGGGEEE-ECCCTTCC-CCCHHHH
T ss_pred EEEEccCchhhhHHHHHHhcccccCCEEEE-EeCCCcEE-ECCHHHH
Confidence 99999987 77789999 764 54256667 7777655
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=5.2e-21 Score=185.22 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=68.8
Q ss_pred CCccHHHHHHHHHHHhcCC---CEEEEeCCCChHhHH-------HHHHHHHcCCEEEEEEeCcchHHhhccceeeecc--
Q 027390 70 PEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI-- 137 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~~p---~llilDEp~~~lD~~-------~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~-- 137 (224)
.||||+||++||++|+.+| ++|||||||++||+. .++++.++|.|||+++|+++++. .||+++. |-
T Consensus 806 LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~-~ADrIiv-Lgp~ 883 (916)
T 3pih_A 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIK-NADHIID-LGPE 883 (916)
T ss_dssp CCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEE-EESS
T ss_pred CCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEE-ecCC
Confidence 4799999999999999875 799999999999954 34556677999999999998775 5999974 41
Q ss_pred ---CCeeEEEcCCHHHHHH
Q 027390 138 ---GGVDTVTLGDEEARAR 153 (224)
Q Consensus 138 ---~~~~~v~~~~~~~~~~ 153 (224)
++|+++..|+++.+..
T Consensus 884 gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 884 GGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp SGGGCCEEEEEESHHHHHS
T ss_pred CCCCCCEEEEEcCHHHHHh
Confidence 6789999999998764
No 63
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.84 E-value=1.2e-22 Score=166.38 Aligned_cols=118 Identities=13% Similarity=0.076 Sum_probs=74.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE--c-C----CCcccCCCCcc-cch--hh-----H-----
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV--D-T----SNEIGGDGDIP-HSA--IG-----T----- 63 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~--~-~----~~~~~~~~~~~-~~~--~~-----~----- 63 (224)
+-+++|++++|+||||||||||+++|+|+ +|+ .|.|... . . ...+++....+ ++. .. .
T Consensus 17 ~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~-~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~ 94 (208)
T 3b85_A 17 DAIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ-SKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMV 94 (208)
T ss_dssp HHHHHCSEEEEECCTTSSTTHHHHHHHHH-HHH-TTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTS
T ss_pred HhccCCCEEEEECCCCCCHHHHHHHHhcC-CCc-CCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhc
Confidence 34689999999999999999999999999 887 5655321 0 0 11122111100 000 00 0
Q ss_pred -----HhHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHHH-H--HcCCEEEEEEeCcchHH
Q 027390 64 -----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI-A--ERGVMLIGTAHGEWLEN 126 (224)
Q Consensus 64 -----~~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~~-~--~~g~tvi~~tH~~~~~~ 126 (224)
.+.+.. ..||+||++||++++.+|++|||||||++ -...+.++ . ++|.||| +||++++++
T Consensus 95 ~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~l~~l~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 95 EPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMFLTRLGFGSKMV-VTGDITQVD 162 (208)
T ss_dssp CTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHHHTTBCTTCEEE-EEEC-----
T ss_pred cHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHHHHHhcCCCEEE-EECCHHHHh
Confidence 000111 23999999999999999999999999999 43333332 2 3578999 999988654
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.83 E-value=4.8e-21 Score=184.15 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=67.8
Q ss_pred CCccHHHHHHHHHHHhcC---CCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceeeecc--
Q 027390 70 PEPSLQHKVMIEAVENHM---PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLI-- 137 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~~---p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~-- 137 (224)
.|+||+||++||++|+.+ |++|||||||++||... ++++.+.|.|||++||+++++ ..||+++. |-
T Consensus 731 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~-L~p~ 808 (842)
T 2vf7_A 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLD-IGPG 808 (842)
T ss_dssp CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEE-ECSS
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEE-ECCC
Confidence 379999999999999996 79999999999999543 445667799999999999988 68999974 42
Q ss_pred ---CCeeEEEcCCHHHHH
Q 027390 138 ---GGVDTVTLGDEEARA 152 (224)
Q Consensus 138 ---~~~~~v~~~~~~~~~ 152 (224)
++|+++..++++...
T Consensus 809 ~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 809 AGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp SGGGCCSEEEEECHHHHT
T ss_pred CCCCCCEEEEEcCHHHHH
Confidence 467888888887654
No 65
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.83 E-value=1.5e-20 Score=166.05 Aligned_cols=71 Identities=10% Similarity=0.056 Sum_probs=57.6
Q ss_pred CCccHHHHHHHHHHHh------cCCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceeeec
Q 027390 70 PEPSLQHKVMIEAVEN------HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDL 136 (224)
Q Consensus 70 ~~~g~~qr~~la~al~------~~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l 136 (224)
.|+||+||++||+|++ .+|++|||||||++||+.. +.++.+.|.|||++||++++ ...||+++. +
T Consensus 280 LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~~~~-l 357 (365)
T 3qf7_A 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDRKLR-I 357 (365)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSCEEE-E
T ss_pred CCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCEEEE-E
Confidence 5799999999999999 7999999999999999654 33445668999999999987 567899873 4
Q ss_pred cCCeeEE
Q 027390 137 IGGVDTV 143 (224)
Q Consensus 137 ~~~~~~v 143 (224)
.+|+++
T Consensus 358 -~~G~i~ 363 (365)
T 3qf7_A 358 -TGGVVV 363 (365)
T ss_dssp -ETTEEC
T ss_pred -ECCEEE
Confidence 445443
No 66
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.82 E-value=1.4e-20 Score=167.78 Aligned_cols=63 Identities=11% Similarity=0.082 Sum_probs=53.8
Q ss_pred CCccHHHHHHHHHHHhcCC--CEEEEeCCCChHhHHHH-------HHHHHcCCEEEEEEeCcchHHhhccceee
Q 027390 70 PEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~~p--~llilDEp~~~lD~~~~-------~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
.|+||+||++||++++.+| ++|||||||++||.... +++. +|.+||++||+++++ ..||+++.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~-~~~d~i~~ 367 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIA-ARAHHHYK 367 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHH-TTCSEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH-hhcCeEEE
Confidence 5899999999999999999 99999999999996543 3333 479999999999776 47999974
No 67
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.82 E-value=9.3e-21 Score=165.24 Aligned_cols=122 Identities=18% Similarity=0.195 Sum_probs=90.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHH
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEA 82 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~ 82 (224)
+-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+-+.. ++... ..... ... +..+|++||+++++
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~-e~~~~-~~~~~-i~~-----~~ggg~~~r~~la~ 235 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTE-EIVFK-HHKNY-TQL-----FFGGNITSADCLKS 235 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSC-CCCCS-SCSSE-EEE-----ECBTTBCHHHHHHH
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCee-ccccc-cchhE-EEE-----EeCCChhHHHHHHH
Confidence 3467899999999999999999999999999987 6777765432 22110 01111 000 00178999999999
Q ss_pred HHhcCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027390 83 VENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 83 al~~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
+|..+|++|++|||++..-.+.++.+...+.|+|+|+|+.+ +...||+++.
T Consensus 236 aL~~~p~ilildE~~~~e~~~~l~~~~~g~~tvi~t~H~~~-~~~~~dri~~ 286 (330)
T 2pt7_A 236 CLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGS-SEEAFIRLAN 286 (330)
T ss_dssp HTTSCCSEEEECCCCSTHHHHHHHHHHTTCCCEEEEEECSS-HHHHHHHHHH
T ss_pred HhhhCCCEEEEcCCChHHHHHHHHHHhcCCCEEEEEEcccH-HHHHhhhhee
Confidence 99999999999999985434455555443458999999998 7778999864
No 68
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.82 E-value=5.8e-20 Score=177.59 Aligned_cols=82 Identities=18% Similarity=0.168 Sum_probs=67.5
Q ss_pred CCccHHHHHHHHHHHhcCC---CEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceeeecc--
Q 027390 70 PEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLI-- 137 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~~p---~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~-- 137 (224)
.|+||+||++||++|+.+| ++|||||||++||... ++++.+.|.|||++||+++++ ..||+++. |-
T Consensus 846 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIiv-L~p~ 923 (972)
T 2r6f_A 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIID-LGPE 923 (972)
T ss_dssp CCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEE-ECSS
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEE-EcCC
Confidence 3699999999999999865 9999999999999543 445667799999999999876 47999974 42
Q ss_pred ---CCeeEEEcCCHHHHHH
Q 027390 138 ---GGVDTVTLGDEEARAR 153 (224)
Q Consensus 138 ---~~~~~v~~~~~~~~~~ 153 (224)
++|+++..++++.+..
T Consensus 924 gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 924 GGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp STTSCCSEEEEESHHHHHT
T ss_pred CCCCCCEEEEecCHHHHHh
Confidence 4678888888877653
No 69
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.81 E-value=1.8e-20 Score=149.81 Aligned_cols=121 Identities=20% Similarity=0.134 Sum_probs=76.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE-EEc--C-CCcccCCC---Ccccchhh---------HHhHcCCCCccH
Q 027390 11 SILFVGRPGVGKTTVMREIARVLSDEFQKRVV-IVD--T-SNEIGGDG---DIPHSAIG---------TARRMQVPEPSL 74 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~-~~~--~-~~~~~~~~---~~~~~~~~---------~~~~~~~~~~g~ 74 (224)
+++|+||||||||||+|+|+|++.....+... -.. . ...+++.. ........ ..+...-.|+||
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 68999999999999999999998532111100 000 0 00011000 00000000 001112246899
Q ss_pred HHHHHHHHH-----HhcCCCEEEEeC--CCChHhHHHHH---HH-HHcCCEEEEEEe---CcchHHhhccc
Q 027390 75 QHKVMIEAV-----ENHMPEVIIVDE--IGTEAEAHACR---SI-AERGVMLIGTAH---GEWLENIIKNP 131 (224)
Q Consensus 75 ~qr~~la~a-----l~~~p~llilDE--p~~~lD~~~~~---~~-~~~g~tvi~~tH---~~~~~~~~~d~ 131 (224)
+||+++|++ ++.+|++||||| |++++|....+ ++ .+.+.|+|+++| +.+++..+|++
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 999999996 999999999999 99999965433 33 344667888885 78888888887
No 70
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.81 E-value=5.9e-20 Score=178.07 Aligned_cols=82 Identities=21% Similarity=0.183 Sum_probs=68.0
Q ss_pred CCccHHHHHHHHHHHhcCC---CEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceeeecc--
Q 027390 70 PEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLI-- 137 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~~p---~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~-- 137 (224)
.|+||+||++||++|+.+| ++|||||||++||... ++++++.|.|||++||+++++ ..||+++. |-
T Consensus 864 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIiv-L~p~ 941 (993)
T 2ygr_A 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWIID-LGPE 941 (993)
T ss_dssp SCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEE-EESS
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEE-ECCC
Confidence 3799999999999999865 9999999999999543 445567799999999999877 57999974 42
Q ss_pred ---CCeeEEEcCCHHHHHH
Q 027390 138 ---GGVDTVTLGDEEARAR 153 (224)
Q Consensus 138 ---~~~~~v~~~~~~~~~~ 153 (224)
++|+++..++++....
T Consensus 942 gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 942 GGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp STTSCSEEEEEECHHHHHH
T ss_pred cCCCCCEEEEecCHHHHHh
Confidence 5688888888887654
No 71
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=4.4e-20 Score=170.00 Aligned_cols=168 Identities=12% Similarity=0.081 Sum_probs=114.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-cCCCcccC-----CCCcccchhhHHhHc---C-----
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-DTSNEIGG-----DGDIPHSAIGTARRM---Q----- 68 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-~~~~~~~~-----~~~~~~~~~~~~~~~---~----- 68 (224)
...+++|++++|+||||||||||+++++|...+. +.++.++ .+...... ...+. ....... .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~~~l~~~~~~~g~~---~~~~~~~g~~~~~~~~ 350 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESRAQLLRNAYSWGMD---FEEMERQNLLKIVCAY 350 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCHHHHHHHHHTTSCC---HHHHHHTTSEEECCCC
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHHHHHHHHHcCCC---HHHHHhCCCEEEEEec
Confidence 3468999999999999999999999999998875 4555443 33221000 00000 0000011 1
Q ss_pred --CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-----H-------HHHHHHcCCEEEEEEeCc----------ch
Q 027390 69 --VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-----A-------CRSIAERGVMLIGTAHGE----------WL 124 (224)
Q Consensus 69 --~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-----~-------~~~~~~~g~tvi~~tH~~----------~~ 124 (224)
-.|+|++||+++|+++..+|++||+| |+++||.. . ++.+++.|.|+|+++|+. ..
T Consensus 351 p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~ 429 (525)
T 1tf7_A 351 PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSH 429 (525)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSC
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcc
Confidence 13789999999999999999999999 99999954 2 344567799999999998 66
Q ss_pred HHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhcCCC-ceeEEEEEecceeEEec
Q 027390 125 ENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERKAPP-TFYFLIEMRERHYWVTH 183 (224)
Q Consensus 125 ~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 183 (224)
...+||+++. | ..++ .+.. ..+...-.|+|+++. .....|++.+.|..+..
T Consensus 430 l~~~~D~vi~-L-~~ge---~~~~---~~R~l~v~K~R~~~~~~~~~~f~i~~~Gi~v~~ 481 (525)
T 1tf7_A 430 ISTITDTIIL-L-QYVE---IRGE---MSRAINVFKMRGSWHDKAIREFMISDKGPDIKD 481 (525)
T ss_dssp CTTTCSEEEE-E-EEEE---ETTE---EEEEEEEEEESSSCCCCBCEEEEECSSCEEEEE
T ss_pred cceeeeEEEE-E-EEEE---eCCE---EEEEEEEEECCCCCCCCCEEEEEEcCCCEEEec
Confidence 7788999863 3 2221 1111 113344456777776 55788999988866543
No 72
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.76 E-value=9.3e-19 Score=147.91 Aligned_cols=119 Identities=19% Similarity=0.228 Sum_probs=83.7
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHh
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 85 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~ 85 (224)
+++|++++|+||||||||||+++|+|++.|+..|.|.+.+..-+....... .... ...+++.. ...++++++++.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~--~~v~-q~~~gl~~--~~l~~~la~aL~ 96 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK--SIVN-QREVGEDT--KSFADALRAALR 96 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS--SEEE-EEEBTTTB--SCHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcc--eeee-HHHhCCCH--HHHHHHHHHHHh
Confidence 789999999999999999999999999987535888776543222111000 0000 01222221 234899999999
Q ss_pred cCCCEEEEeCCCChHhHHHHH---HHHHcCCEEEEEEeCcchHHhhcccee
Q 027390 86 HMPEVIIVDEIGTEAEAHACR---SIAERGVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 86 ~~p~llilDEp~~~lD~~~~~---~~~~~g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
.+|++|++|||+ |.+.+. +..+.|.+|++++|+.+ +...|++++
T Consensus 97 ~~p~illlDEp~---D~~~~~~~l~~~~~g~~vl~t~H~~~-~~~~~dri~ 143 (261)
T 2eyu_A 97 EDPDVIFVGEMR---DLETVETALRAAETGHLVFGTLHTNT-AIDTIHRIV 143 (261)
T ss_dssp HCCSEEEESCCC---SHHHHHHHHHHHHTTCEEEEEECCSS-HHHHHHHHH
T ss_pred hCCCEEEeCCCC---CHHHHHHHHHHHccCCEEEEEeCcch-HHHHHHHHh
Confidence 999999999999 544332 23456899999999987 566788875
No 73
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.76 E-value=9.8e-19 Score=144.63 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=75.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHH--hcCCccCCCeEEEEcCCCc------ccCCCCcccchh-----------hHH
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIA--RVLSDEFQKRVVIVDTSNE------IGGDGDIPHSAI-----------GTA 64 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~--g~l~~~~~~~i~~~~~~~~------~~~~~~~~~~~~-----------~~~ 64 (224)
.-|++|++++|+||||||||||+++|+ +++.+. ++.+.+...... ....+..++... ...
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 103 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG-EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSV 103 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC-CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-----
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccc
Confidence 368999999999999999999999999 654443 344333322110 000001111000 000
Q ss_pred ------h---HcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHh-----H-------HHHHHHHHcCCEEEEEEeCcc
Q 027390 65 ------R---RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE-----A-------HACRSIAERGVMLIGTAHGEW 123 (224)
Q Consensus 65 ------~---~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD-----~-------~~~~~~~~~g~tvi~~tH~~~ 123 (224)
. .+...+..+............+|+++++|||++++| . +.++.+++.|+|||++||+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~ 183 (251)
T 2ehv_A 104 VGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD 183 (251)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-
T ss_pred cccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 0 000011122233334444458999999999999997 2 123456677999999999988
Q ss_pred hH---------Hhhc-cceee
Q 027390 124 LE---------NIIK-NPILS 134 (224)
Q Consensus 124 ~~---------~~~~-d~v~~ 134 (224)
.+ +.+| |+++.
T Consensus 184 ~~~~~~~~~~i~~~~aD~vi~ 204 (251)
T 2ehv_A 184 PQHGKLSRYGIEEFIARGVIV 204 (251)
T ss_dssp ---CCSSSSSCGGGGCSEEEE
T ss_pred CCcccccccChhhEeeeEEEE
Confidence 76 5677 99864
No 74
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.75 E-value=1.3e-18 Score=153.05 Aligned_cols=121 Identities=16% Similarity=0.232 Sum_probs=86.7
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCC---CcccchhhHHhHcCCCCccHHHHHHHH
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG---DIPHSAIGTARRMQVPEPSLQHKVMIE 81 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~qr~~la 81 (224)
.+.+|++++|+||||||||||+++|+|+++++.++.+..+....+..... .+.+. ..+. ......-+|+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~------~~~~--~~~~~~~~La 190 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQR------EVHR--DTLGFSEALR 190 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEE------EBTT--TBSCHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeee------eecc--ccCCHHHHHH
Confidence 45678899999999999999999999999886457777665443332111 01110 0111 1122233899
Q ss_pred HHHhcCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027390 82 AVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 82 ~al~~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
++|..+|++|++|||+.....+.+.++.+.|.++++|+|+.+.. ..++|++.
T Consensus 191 ~aL~~~PdvillDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~~~-~~~dRli~ 242 (356)
T 3jvv_A 191 SALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAA-KTIDRVVD 242 (356)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSSHH-HHHHHHHH
T ss_pred HHhhhCcCEEecCCCCCHHHHHHHHHHHhcCCEEEEEEccChHH-HHHHHHhh
Confidence 99999999999999996444555566778899999999999866 67888853
No 75
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.74 E-value=6.4e-18 Score=138.02 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=73.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc-----CCCeEEEEcCCCcccC---------CCCcccchhhHHhHcC-
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-----FQKRVVIVDTSNEIGG---------DGDIPHSAIGTARRMQ- 68 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~-----~~~~i~~~~~~~~~~~---------~~~~~~~~~~~~~~~~- 68 (224)
--+++|++++|+||||||||||+++|+|.+.+. ..+.+.+++....... ....+. ...+++.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~ 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD---EVLKHIYV 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHH---HHHHTEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHH---HHhhcEEE
Confidence 368999999999999999999999999965542 1344555543221100 000000 0011111
Q ss_pred --CCCccH-HHHHHHHHHH-------hcCCCEEEEeCCCChHhHH----------------HH---HHH-HHcCCEEEEE
Q 027390 69 --VPEPSL-QHKVMIEAVE-------NHMPEVIIVDEIGTEAEAH----------------AC---RSI-AERGVMLIGT 118 (224)
Q Consensus 69 --~~~~g~-~qr~~la~al-------~~~p~llilDEp~~~lD~~----------------~~---~~~-~~~g~tvi~~ 118 (224)
..+... .+.+..+..+ ..+|++|++|||++.+|.. .+ .++ ++.|+|||++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~v 176 (231)
T 4a74_A 97 ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVT 176 (231)
T ss_dssp EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 112222 2223333333 3499999999999998752 22 223 3559999999
Q ss_pred EeCcch----HHhhccceee
Q 027390 119 AHGEWL----ENIIKNPILS 134 (224)
Q Consensus 119 tH~~~~----~~~~~d~v~~ 134 (224)
||..+. ...+||.++.
T Consensus 177 tH~~~~~g~~~~~~~d~~l~ 196 (231)
T 4a74_A 177 NQVQANGGHILAHSATLRVY 196 (231)
T ss_dssp EECC---------CCSEEEE
T ss_pred eecccCcchhhHhhceEEEE
Confidence 995543 6777888754
No 76
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.71 E-value=5.5e-17 Score=132.28 Aligned_cols=129 Identities=14% Similarity=0.071 Sum_probs=82.9
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCccc-------CCCCcccchh----hHH--------h
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-------GDGDIPHSAI----GTA--------R 65 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~----~~~--------~ 65 (224)
-+++|++++|+||||||||||++.+++...+. ++.+.++....... .......... ... .
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCc
Confidence 58899999999999999999999999888766 57777765322100 0000000000 000 0
Q ss_pred Hc--CCCCccHHHHHHHHHHHhcCCC--EEEEeCCCChH--hH-------HHHHHHH-HcCCEEEEEEeCc--------c
Q 027390 66 RM--QVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEA--EA-------HACRSIA-ERGVMLIGTAHGE--------W 123 (224)
Q Consensus 66 ~~--~~~~~g~~qr~~la~al~~~p~--llilDEp~~~l--D~-------~~~~~~~-~~g~tvi~~tH~~--------~ 123 (224)
.. .-.+.++.++...+.+...+|+ +|++|||++.+ |. ..+.++. +.+.|||+++|+. .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~ 177 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGF 177 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccc
Confidence 00 1114456666666666677999 99999999876 63 2334443 5589999999998 4
Q ss_pred hHHhhccceee
Q 027390 124 LENIIKNPILS 134 (224)
Q Consensus 124 ~~~~~~d~v~~ 134 (224)
.++.+||+++.
T Consensus 178 ~~~~~~d~vi~ 188 (235)
T 2w0m_A 178 GVEHVADGIIR 188 (235)
T ss_dssp CHHHHCSEEEE
T ss_pred chheeeeEEEE
Confidence 47788999864
No 77
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.70 E-value=5.2e-19 Score=158.28 Aligned_cols=125 Identities=14% Similarity=0.192 Sum_probs=82.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE----------EcCCCcccC-----CCCc--c-cchhhHHhHcCC---
Q 027390 11 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVI----------VDTSNEIGG-----DGDI--P-HSAIGTARRMQV--- 69 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~----------~~~~~~~~~-----~~~~--~-~~~~~~~~~~~~--- 69 (224)
+++|+||||||||||+|+|+|+++|+ .|.+.+ +.+...... ...+ . .......+.+++
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~-~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEE-EGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTS-TTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCcc-CceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999877 343322 111111000 0000 0 001111122222
Q ss_pred -----CCcc--HHHHHHHHHHHhc----------CCCEEEEeCCCChHhH-------HHHHHHH-----HcC----CEEE
Q 027390 70 -----PEPS--LQHKVMIEAVENH----------MPEVIIVDEIGTEAEA-------HACRSIA-----ERG----VMLI 116 (224)
Q Consensus 70 -----~~~g--~~qr~~la~al~~----------~p~llilDEp~~~lD~-------~~~~~~~-----~~g----~tvi 116 (224)
.|+| |+||+.+|+++.. +|+++++||||++||+ +.++++. +.| .+++
T Consensus 150 ~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iil 229 (413)
T 1tq4_A 150 DFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFL 229 (413)
T ss_dssp SEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEE
T ss_pred CCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 2466 9999999999999 9999999999999993 2334442 322 5688
Q ss_pred EEEeCcch--HHhhccceeeec
Q 027390 117 GTAHGEWL--ENIIKNPILSDL 136 (224)
Q Consensus 117 ~~tH~~~~--~~~~~d~v~~~l 136 (224)
+|+|..+. .+.+|+++...+
T Consensus 230 iSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 230 LSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp CCTTCTTSTTHHHHHHHHHHHS
T ss_pred EecCcCCccCHHHHHHHHHHhC
Confidence 89999776 788999986534
No 78
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.68 E-value=1.8e-16 Score=137.34 Aligned_cols=72 Identities=10% Similarity=0.156 Sum_probs=54.2
Q ss_pred CCccHHHHHHHHHHHh----cCCCEEEEeCCCChHhHHHH-------HHHHHcCCEEEEEEeCcchHHhhccce--eeec
Q 027390 70 PEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPI--LSDL 136 (224)
Q Consensus 70 ~~~g~~qr~~la~al~----~~p~llilDEp~~~lD~~~~-------~~~~~~g~tvi~~tH~~~~~~~~~d~v--~~~l 136 (224)
.|+||+||++||++++ .+|++|||||||++||.... .++ ..+.++|++||+.+ ...+||++ +. +
T Consensus 220 lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~vi~~tH~~~-~~~~~d~~~~v~-~ 296 (322)
T 1e69_A 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-SKHTQFIVITHNKI-VMEAADLLHGVT-M 296 (322)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-TTTSEEEEECCCTT-GGGGCSEEEEEE-E
T ss_pred CCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHH-HHhhCceEEEEE-E
Confidence 3689999999999997 57899999999999996532 233 24789999999975 45678976 33 4
Q ss_pred cCCeeEEE
Q 027390 137 IGGVDTVT 144 (224)
Q Consensus 137 ~~~~~~v~ 144 (224)
.+|...+.
T Consensus 297 ~~g~s~~~ 304 (322)
T 1e69_A 297 VNGVSAIV 304 (322)
T ss_dssp SSSCEEEE
T ss_pred eCCEEEEE
Confidence 45444333
No 79
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.68 E-value=4.6e-17 Score=158.19 Aligned_cols=118 Identities=19% Similarity=0.183 Sum_probs=76.7
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHH--------HhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHh-HcCCCCccHH
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREI--------ARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTAR-RMQVPEPSLQ 75 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i--------~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~ 75 (224)
.+++|++++|+||||||||||||++ .|...|.....+..++ .+. ..++... ...-.|.++.
T Consensus 658 ~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d---~i~-------~~ig~~d~l~~~lStf~~ 727 (934)
T 3thx_A 658 EKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVD---CIL-------ARVGAGDSQLKGVSTFMA 727 (934)
T ss_dssp ETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCS---EEE-------EECC---------CHHHH
T ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHH---HHH-------HhcCchhhHHHhHhhhHH
Confidence 3567999999999999999999999 5554443111111110 110 0000000 1122356677
Q ss_pred HHHHHHHHH--hcCCCEEEEeCCCChHhHH--------HHHHHHH-cCCEEEEEEeCcchHHhhcccee
Q 027390 76 HKVMIEAVE--NHMPEVIIVDEIGTEAEAH--------ACRSIAE-RGVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 76 qr~~la~al--~~~p~llilDEp~~~lD~~--------~~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
++..+++++ +.+|+++|||||++|+|+. .++.+.+ .|.++|++||+.++. .+|+++.
T Consensus 728 e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~ 795 (934)
T 3thx_A 728 EMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIP 795 (934)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCT
T ss_pred HHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccc
Confidence 777777777 8999999999999999953 2344555 489999999998755 5788864
No 80
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.68 E-value=7.8e-17 Score=138.81 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=79.2
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc----------------ccCCC-----Ccccc----
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE----------------IGGDG-----DIPHS---- 59 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~----------------~~~~~-----~~~~~---- 59 (224)
.+++|++++|+||||||||||++.|+|++.++ +|+|.+.+.+.. +++.. ..+..
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e 174 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSK 174 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHH
Confidence 36799999999999999999999999999887 788887654311 11100 01100
Q ss_pred hhhHH----------hHcCCCCc-----c--HHHHHHHHHHHhcCCC--EEEEeCCCChHhHH-HHHHHHH-cCCEEEEE
Q 027390 60 AIGTA----------RRMQVPEP-----S--LQHKVMIEAVENHMPE--VIIVDEIGTEAEAH-ACRSIAE-RGVMLIGT 118 (224)
Q Consensus 60 ~~~~~----------~~~~~~~~-----g--~~qr~~la~al~~~p~--llilDEp~~~lD~~-~~~~~~~-~g~tvi~~ 118 (224)
..... +.++.... + -+||+++|+++..+|+ +|+|| ||+++|.. .++.+.+ .|.|+|++
T Consensus 175 ~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~iii 253 (302)
T 3b9q_A 175 AVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLIL 253 (302)
T ss_dssp HHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEEEE
Confidence 00000 01111110 0 1689999999999999 99999 99999954 3455654 58999999
Q ss_pred EeC
Q 027390 119 AHG 121 (224)
Q Consensus 119 tH~ 121 (224)
||.
T Consensus 254 Thl 256 (302)
T 3b9q_A 254 TKL 256 (302)
T ss_dssp ECC
T ss_pred eCC
Confidence 993
No 81
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.68 E-value=3e-19 Score=145.25 Aligned_cols=52 Identities=10% Similarity=-0.190 Sum_probs=40.8
Q ss_pred HHhcCCCEEEEeCCCChH----hHH-------HHHHHH-HcCCEEEEEEeCcchHHhhccceee
Q 027390 83 VENHMPEVIIVDEIGTEA----EAH-------ACRSIA-ERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 83 al~~~p~llilDEp~~~l----D~~-------~~~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
+++.+|++++||||++++ |.. .+.++. +.|.|+|++||+++++..+||+++.
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~ 200 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLV 200 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHH
Confidence 566789999999999887 432 234454 4589999999999999999999963
No 82
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.65 E-value=3.1e-16 Score=138.00 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=79.2
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc----------------ccCCC-----Cccc----c
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE----------------IGGDG-----DIPH----S 59 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~----------------~~~~~-----~~~~----~ 59 (224)
.+++|++++|+||||||||||++.|+|++.++ +++|.+...+.. +++.. ..+. .
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e 231 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSK 231 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHH
Confidence 46789999999999999999999999999887 788887654311 11100 0110 0
Q ss_pred hhhHH----------hHcCCCCc-------cHHHHHHHHHHHhcCCC--EEEEeCCCChHhHH-HHHHHHH-cCCEEEEE
Q 027390 60 AIGTA----------RRMQVPEP-------SLQHKVMIEAVENHMPE--VIIVDEIGTEAEAH-ACRSIAE-RGVMLIGT 118 (224)
Q Consensus 60 ~~~~~----------~~~~~~~~-------g~~qr~~la~al~~~p~--llilDEp~~~lD~~-~~~~~~~-~g~tvi~~ 118 (224)
..... +.++.... =-+||+++|+++..+|+ +|+|| ||+++|.. .++.+.+ .+.|+|++
T Consensus 232 ~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~t~iii 310 (359)
T 2og2_A 232 AVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLIL 310 (359)
T ss_dssp HHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCCeEEEE
Confidence 00000 01111110 01689999999999999 99999 99999954 3455654 58999999
Q ss_pred EeC
Q 027390 119 AHG 121 (224)
Q Consensus 119 tH~ 121 (224)
||.
T Consensus 311 Thl 313 (359)
T 2og2_A 311 TKL 313 (359)
T ss_dssp ESC
T ss_pred ecC
Confidence 994
No 83
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.65 E-value=4.7e-16 Score=132.69 Aligned_cols=129 Identities=18% Similarity=0.203 Sum_probs=80.6
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc---cc-----CCCCcccch---h-----------h
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE---IG-----GDGDIPHSA---I-----------G 62 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~---~~-----~~~~~~~~~---~-----------~ 62 (224)
.+++|++++|+||||||||||++.|++.+.++.+..+.++..... +. ......... . .
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 110 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQ 110 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHH
Confidence 588999999999999999999999999998763337777643210 00 000000000 0 0
Q ss_pred HH----h--HcCC------CCccH-HHHHHHHHHHhcCCCEEEEeCCCC---h---HhH-H-------HHHHHH-HcCCE
Q 027390 63 TA----R--RMQV------PEPSL-QHKVMIEAVENHMPEVIIVDEIGT---E---AEA-H-------ACRSIA-ERGVM 114 (224)
Q Consensus 63 ~~----~--~~~~------~~~g~-~qr~~la~al~~~p~llilDEp~~---~---lD~-~-------~~~~~~-~~g~t 114 (224)
.. . .+.+ .+.++ ++++. ++++..+|++||+|||++ + +|. . .++.++ +.++|
T Consensus 111 ~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~ 189 (296)
T 1cr0_A 111 WFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVV 189 (296)
T ss_dssp HHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCE
T ss_pred HHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCe
Confidence 00 0 0101 12334 55655 888999999999999999 4 342 2 133444 45999
Q ss_pred EEEEEeCc--c--------------------hHHhhccceee
Q 027390 115 LIGTAHGE--W--------------------LENIIKNPILS 134 (224)
Q Consensus 115 vi~~tH~~--~--------------------~~~~~~d~v~~ 134 (224)
||+++|+. + .++.+||+++.
T Consensus 190 vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~ 231 (296)
T 1cr0_A 190 LVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIA 231 (296)
T ss_dssp EEEEEECC-----------------CCC---CHHHHCSEEEE
T ss_pred EEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEE
Confidence 99999995 3 56778999864
No 84
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.64 E-value=1.6e-16 Score=156.00 Aligned_cols=121 Identities=16% Similarity=0.170 Sum_probs=79.1
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE-EEcCCCc-ccCCCCcccchhhHHhHc--C--CCCccHHHHHHHH
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-IVDTSNE-IGGDGDIPHSAIGTARRM--Q--VPEPSLQHKVMIE 81 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~-~~~~~~~-~~~~~~~~~~~~~~~~~~--~--~~~~g~~qr~~la 81 (224)
+|++++|+||||||||||||++ |++.+- ..+. ++++... +.....+ ...++..... + -.+.+ .++++++
T Consensus 788 ~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--aqiG~~Vpq~~~~l~v~d~I-~~rig~~d~~~~~~stf~~e-m~~~a~a 862 (1022)
T 2o8b_B 788 KAYCVLVTGPNMGGKSTLMRQA-GLLAVM--AQMGCYVPAEVCRLTPIDRV-FTRLGASDRIMSGESTFFVE-LSETASI 862 (1022)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH-HHHHHH--HTTTCCEESSEEEECCCSBE-EEECC---------CHHHHH-HHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHH-HHHHHH--hheeEEeccCcCCCCHHHHH-HHHcCCHHHHhhchhhhHHH-HHHHHHH
Confidence 3899999999999999999999 887643 1111 3333211 1000000 0000100000 0 01133 4458999
Q ss_pred HHHhcCCCEEEEeCCCChHhHH--------HHHHHHHc-CCEEEEEEeCcchHHhhcccee
Q 027390 82 AVENHMPEVIIVDEIGTEAEAH--------ACRSIAER-GVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 82 ~al~~~p~llilDEp~~~lD~~--------~~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
++++.+|+++|||||++|+|.. .++.+.+. |.++|++||+.++...+++++.
T Consensus 863 l~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~ 923 (1022)
T 2o8b_B 863 LMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVA 923 (1022)
T ss_dssp HHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSS
T ss_pred HHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcce
Confidence 9999999999999999998842 24456665 8999999999999998999885
No 85
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.63 E-value=6.6e-16 Score=134.73 Aligned_cols=64 Identities=9% Similarity=0.023 Sum_probs=51.5
Q ss_pred CCccHHH------HHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027390 70 PEPSLQH------KVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 70 ~~~g~~q------r~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
.|+||+| |+++|++++.+|++|||||||++||+.. +.++.+.+.+||++||+.+ ....||+++.
T Consensus 249 lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d~~~~ 325 (339)
T 3qkt_A 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADHVIR 325 (339)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCCEEEE
Confidence 4689999 6677788888999999999999999654 3344456789999999976 4568999853
No 86
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.62 E-value=3.2e-16 Score=149.72 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=75.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcCC-ccCCCeEEEEcCC-CcccCCCCcccchhhHHhHc-CCCCccHHHHHHHHHHH-
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVLS-DEFQKRVVIVDTS-NEIGGDGDIPHSAIGTARRM-QVPEPSLQHKVMIEAVE- 84 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l~-~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~g~~qr~~la~al- 84 (224)
|++++|+||||||||||+|+|+|+.. +. .|.+. +.. ..++....+. ...+..+.+ .-.|.++++++.+++++
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~-~G~~v--pa~~~~i~~v~~i~-~~~~~~d~l~~g~S~~~~e~~~la~il~ 651 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQ-VGSFV--PAEEAHLPLFDGIY-TRIGASDDLAGGKSTFMVEMEEVALILK 651 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHT-TTCCB--SSSEEEECCCSEEE-EECCC------CCSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcc-cCcee--ehhccceeeHHHhh-ccCCHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999864 33 23211 110 0111110000 000111111 12357889999999999
Q ss_pred -hcCCCEEEEeCC---CChHhHHH-----HHHHHHcCCEEEEEEeCcchHH
Q 027390 85 -NHMPEVIIVDEI---GTEAEAHA-----CRSIAERGVMLIGTAHGEWLEN 126 (224)
Q Consensus 85 -~~~p~llilDEp---~~~lD~~~-----~~~~~~~g~tvi~~tH~~~~~~ 126 (224)
+.+|+++||||| |+++|... +..+.+.|.++|++||+.++..
T Consensus 652 ~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 652 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred hccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 899999999999 89999543 3345567899999999987653
No 87
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.62 E-value=4.2e-16 Score=151.17 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=74.0
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCC--------ccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHH
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLS--------DEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQH 76 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~--------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~q 76 (224)
.+++|++++|+||||||||||||+++++.. |.....+.++ ..+.......+.. .....-.+++|++
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~---d~i~~~ig~~d~l---~~~~stfs~em~~ 742 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIV---DGIFTRMGAADNI---YKGRSTFMEELTD 742 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECC---SEEEEEC-------------CCHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHH---HHHHHhCChHHHH---HHhHHHhhHHHHH
Confidence 457899999999999999999999986532 1100111110 0010000000000 0111222468888
Q ss_pred HHHHHHHHhcCCCEEEEeCCCChHhHH--------HHHHHHH-cCCEEEEEEeCcchHHhhccc
Q 027390 77 KVMIEAVENHMPEVIIVDEIGTEAEAH--------ACRSIAE-RGVMLIGTAHGEWLENIIKNP 131 (224)
Q Consensus 77 r~~la~al~~~p~llilDEp~~~lD~~--------~~~~~~~-~g~tvi~~tH~~~~~~~~~d~ 131 (224)
+..++++ +.+|+++|||||++|+|+. .++.+.+ .|.++|++||+.++.. ++++
T Consensus 743 ~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~-l~~~ 804 (918)
T 3thx_B 743 TAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE-LEKN 804 (918)
T ss_dssp HHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHH
T ss_pred HHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH-HHhh
Confidence 8888877 7999999999999999953 2334544 5899999999987553 4543
No 88
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.61 E-value=5.7e-16 Score=136.98 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=82.5
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCC---CcccchhhHHhHcCCCCccHHHHHHHH
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG---DIPHSAIGTARRMQVPEPSLQHKVMIE 81 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~qr~~la 81 (224)
.+++|++++|+||||||||||+++|+|++.++..+.|.+.+...+..... .+++. .++... ..-+..++
T Consensus 132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~------~~g~~~--~~~~~~l~ 203 (372)
T 2ewv_A 132 CHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR------EVGEDT--KSFADALR 203 (372)
T ss_dssp TTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE------EBTTTB--SCSHHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee------ecCCCH--HHHHHHHH
Confidence 36899999999999999999999999999875358887766433321100 01110 111111 11256899
Q ss_pred HHHhcCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcchHHhhcccee
Q 027390 82 AVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 82 ~al~~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
.++..+|++|++|||+.......+.+..+.|.+++.|+|+.+ +...+++++
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~-~~~~~~rl~ 254 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNT-AIDTIHRIV 254 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCS-HHHHHHHHH
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcch-HHHHHHHHH
Confidence 999999999999999944333322233456899999999977 666778874
No 89
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.60 E-value=8.6e-15 Score=118.58 Aligned_cols=121 Identities=19% Similarity=0.143 Sum_probs=80.9
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhh-----------HHhHcCC--CC
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIG-----------TARRMQV--PE 71 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~--~~ 71 (224)
-+++|++++|+||||||||||++.+++ .. ++.+.|++...... +..... ..+++.+ .+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~---~~-~~~v~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL---LS-GKKVAYVDTEGGFS-----PERLVQMAETRGLNPEEALSRFILFTPS 86 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH---HH-CSEEEEEESSCCCC-----HHHHHHHHHTTTCCHHHHHHHEEEECCT
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH---Hc-CCcEEEEECCCCCC-----HHHHHHHHHhcCCChHHHhhcEEEEecC
Confidence 588999999999999999999999999 33 57788776433111 000000 0111111 12
Q ss_pred cc--HHHHHHHHHHHhcC-CCEEEEeCCCChHhH--------H----H---HHHHH-HcCCEEEEEEeCcc---------
Q 027390 72 PS--LQHKVMIEAVENHM-PEVIIVDEIGTEAEA--------H----A---CRSIA-ERGVMLIGTAHGEW--------- 123 (224)
Q Consensus 72 ~g--~~qr~~la~al~~~-p~llilDEp~~~lD~--------~----~---~~~~~-~~g~tvi~~tH~~~--------- 123 (224)
.+ +++++..+++++.+ |+++|+|||++.+|. . . +..+. +.+.++|+++|...
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p 166 (220)
T 2cvh_A 87 DFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKP 166 (220)
T ss_dssp TTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCS
T ss_pred CHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcccc
Confidence 23 35567777788875 999999999998763 1 1 23333 45899999999865
Q ss_pred ----hHHhhccceee
Q 027390 124 ----LENIIKNPILS 134 (224)
Q Consensus 124 ----~~~~~~d~v~~ 134 (224)
..+.+||.++.
T Consensus 167 ~~~~~~~~~~d~vi~ 181 (220)
T 2cvh_A 167 VAEQTLGYRCKDILR 181 (220)
T ss_dssp CCCHHHHHTSSEEEE
T ss_pred CCCcceeecCcEEEE
Confidence 35677888753
No 90
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.56 E-value=1.7e-14 Score=126.43 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=78.0
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcC--CccC---CCeEEEEcCCCcccCCCCcccchhhH-----------HhHcC
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVL--SDEF---QKRVVIVDTSNEIGGDGDIPHSAIGT-----------ARRMQ 68 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l--~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 68 (224)
-+++|++++|+||||||||||++.+++.. +|+. ++.+.|++...... +...... .+++.
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~-----~~~i~~i~q~~~~~~~~v~~ni~ 201 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----PERIREIAQNRGLDPDEVLKHIY 201 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC-----HHHHHHHHHTTTCCHHHHGGGEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC-----HHHHHHHHHHcCCCHHHHhhCEE
Confidence 58999999999999999999999999998 5553 26766665432210 0100000 01111
Q ss_pred ----CCCccHHHHHHHHHHHh-------cCCCEEEEeCCCChHhHHH------------H-------HHHH-HcCCEEEE
Q 027390 69 ----VPEPSLQHKVMIEAVEN-------HMPEVIIVDEIGTEAEAHA------------C-------RSIA-ERGVMLIG 117 (224)
Q Consensus 69 ----~~~~g~~qr~~la~al~-------~~p~llilDEp~~~lD~~~------------~-------~~~~-~~g~tvi~ 117 (224)
..+.++.+++.++..++ .+|++||+|||++.+|... + ..+. +.++|||+
T Consensus 202 ~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii 281 (349)
T 1pzn_A 202 VARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFV 281 (349)
T ss_dssp EEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 12356778888888888 6899999999999998631 1 1222 35899999
Q ss_pred EEeCcchHH
Q 027390 118 TAHGEWLEN 126 (224)
Q Consensus 118 ~tH~~~~~~ 126 (224)
++|......
T Consensus 282 ~~h~~~~~~ 290 (349)
T 1pzn_A 282 TNQVQARPD 290 (349)
T ss_dssp EEECC----
T ss_pred Ecccccccc
Confidence 999876443
No 91
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.56 E-value=8.2e-17 Score=139.26 Aligned_cols=119 Identities=14% Similarity=0.025 Sum_probs=77.6
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCC-CeEEEEcCCCcccC---------C--CCcccc-----hhhHHhHc
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-KRVVIVDTSNEIGG---------D--GDIPHS-----AIGTARRM 67 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~-~~i~~~~~~~~~~~---------~--~~~~~~-----~~~~~~~~ 67 (224)
.+++|++++|+||||||||||+++|+|++.+..+ ..+.++.++..+.. . ...+.. .....+.+
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l 165 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSV 165 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 3789999999999999999999999999987622 35777765432211 0 011110 00011111
Q ss_pred ---------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcch
Q 027390 68 ---------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWL 124 (224)
Q Consensus 68 ---------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~ 124 (224)
...|+||+||+++|++++.+|++||+|||+..+|... ..+.+.--..|+++|+.+.
T Consensus 166 ~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~l~~~~D~~I~V~a~~~~ 230 (312)
T 3aez_A 166 KSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LMVSDLFDFSLYVDARIED 230 (312)
T ss_dssp HTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CCGGGGCSEEEEEEECHHH
T ss_pred CCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-HHHHHhcCcEEEEECCHHH
Confidence 1136899999999999999999999999999876311 1122222245666666543
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.55 E-value=2.9e-14 Score=131.18 Aligned_cols=129 Identities=15% Similarity=0.098 Sum_probs=80.5
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHH--HHhcCCccCCCeEEEEcCCCcc------cCCCCcccchhhH--HhHcC------
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMRE--IARVLSDEFQKRVVIVDTSNEI------GGDGDIPHSAIGT--ARRMQ------ 68 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~--i~g~l~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~--~~~~~------ 68 (224)
.+++|++++|+||||||||||+++ ++|+++|+ .+.+.+....... ...+..++..... ...+.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~-~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~ 113 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD-EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPE 113 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC-CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSS
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccc
Confidence 689999999999999999999999 78999876 5776665432100 0001111110000 00000
Q ss_pred ----CCCccH-HHHHHHHHHHh-cCCCEEEEeCCCCh-----HhHH-------HHHHHHHcCCEEEEEEeCcch------
Q 027390 69 ----VPEPSL-QHKVMIEAVEN-HMPEVIIVDEIGTE-----AEAH-------ACRSIAERGVMLIGTAHGEWL------ 124 (224)
Q Consensus 69 ----~~~~g~-~qr~~la~al~-~~p~llilDEp~~~-----lD~~-------~~~~~~~~g~tvi~~tH~~~~------ 124 (224)
+..-+. .+...+...+. .+|++++||||++. +|.. .++.+++.|+|+|+++|++++
T Consensus 114 ~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~ 193 (525)
T 1tf7_A 114 GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIAR 193 (525)
T ss_dssp CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSST
T ss_pred hhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCcccccc
Confidence 011111 12223444453 78999999999874 4643 344566779999999999886
Q ss_pred ---HHhhccceee
Q 027390 125 ---ENIIKNPILS 134 (224)
Q Consensus 125 ---~~~~~d~v~~ 134 (224)
.+.+||+++.
T Consensus 194 ~~i~~~laD~vi~ 206 (525)
T 1tf7_A 194 YGVEEFVSDNVVI 206 (525)
T ss_dssp TSCHHHHCSEEEE
T ss_pred ccceeeeeeEEEE
Confidence 3566999974
No 93
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.54 E-value=3.7e-15 Score=143.05 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=70.7
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC-CcccCCCCcccchhhHHhH----cCCCCccHHHHHHHH
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-NEIGGDGDIPHSAIGTARR----MQVPEPSLQHKVMIE 81 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~g~~qr~~la 81 (224)
++|++++|+||||||||||||+|+|+......|. +++.. ..++....+. ...+..+. ....+.+++ ++..+
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~--~vpa~~~~i~~~~~i~-~~~~~~d~l~~~~stf~~e~~-~~~~i 680 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS--YVPAQKVEIGPIDRIF-TRVGAADDLASGRSTFMVEMT-ETANI 680 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC--CBSSSEEEECCCCEEE-EEEC-----------CHHHHH-HHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc--ccchhcccceeHHHHH-hhCCHHHHHHhhhhhhhHHHH-HHHHH
Confidence 5899999999999999999999999753210110 11110 0111000000 00000000 111123443 44444
Q ss_pred HHHhcCCCEEEEeCCCChHh---H-----HHHHHHHH-cCCEEEEEEeCcchHHhhccce
Q 027390 82 AVENHMPEVIIVDEIGTEAE---A-----HACRSIAE-RGVMLIGTAHGEWLENIIKNPI 132 (224)
Q Consensus 82 ~al~~~p~llilDEp~~~lD---~-----~~~~~~~~-~g~tvi~~tH~~~~~~~~~d~v 132 (224)
...+.+|+++|||||++|+| . ..++.+.+ .|.++|++||+.++.. +|++.
T Consensus 681 l~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~ 739 (800)
T 1wb9_A 681 LHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ-LPEKM 739 (800)
T ss_dssp HHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHS
T ss_pred HHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-Hhhhh
Confidence 55688999999999977766 2 23455666 4899999999987654 77765
No 94
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.52 E-value=1.2e-15 Score=129.43 Aligned_cols=108 Identities=12% Similarity=0.125 Sum_probs=64.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE----------------cCCCcccC----------CCCcc-cc---h
Q 027390 11 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV----------------DTSNEIGG----------DGDIP-HS---A 60 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~----------------~~~~~~~~----------~~~~~-~~---~ 60 (224)
.++|+||||||||||+|+|+|+..|+ .|.+.+. .+...+.. ..... .. .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~-~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR-KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC-CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 58999999999999999999999887 4544332 22111000 00000 00 0
Q ss_pred h-hH------HhHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHh---HHHHHHHHHcCCEEEEEEeCcc
Q 027390 61 I-GT------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE---AHACRSIAERGVMLIGTAHGEW 123 (224)
Q Consensus 61 ~-~~------~~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD---~~~~~~~~~~g~tvi~~tH~~~ 123 (224)
. .. .....-.|+||+||+++|++++. ++++|||+.++| .+.++.+.+. .++|++.|..+
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGG
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccc
Confidence 0 00 01112247899999999998765 999999988776 4556677666 88888877643
No 95
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.52 E-value=2.6e-16 Score=129.11 Aligned_cols=126 Identities=11% Similarity=0.002 Sum_probs=75.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC-----------CcccCCCC-------------cc-
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-----------NEIGGDGD-------------IP- 57 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~-----------~~~~~~~~-------------~~- 57 (224)
+-.+++|++++|+||||||||||+++|+|++ | |.+.+ ... ..+.+... +.
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p---G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 91 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P---NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLE 91 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHS-T---TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C---CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhh
Confidence 3468999999999999999999999999988 4 33433 110 00000000 00
Q ss_pred -----cchhh--------HHhHcC--C----CCccHHHHHHH-----HHHHhcCCCEEEEeCCCChHhH---HH----HH
Q 027390 58 -----HSAIG--------TARRMQ--V----PEPSLQHKVMI-----EAVENHMPEVIIVDEIGTEAEA---HA----CR 106 (224)
Q Consensus 58 -----~~~~~--------~~~~~~--~----~~~g~~qr~~l-----a~al~~~p~llilDEp~~~lD~---~~----~~ 106 (224)
.+..+ ..+... + .++|++||+++ +++++..|++++||||++++|. .. +.
T Consensus 92 ~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~ 171 (218)
T 1z6g_A 92 YDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRME 171 (218)
T ss_dssp EEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred hhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 00000 001111 1 15899999999 7888889999999999999883 12 22
Q ss_pred HHHH-------cCCEEEEEEeCcchHHhhcccee
Q 027390 107 SIAE-------RGVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 107 ~~~~-------~g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
.+.+ .....|+++|+.+++...+++++
T Consensus 172 ~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 172 QLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 2211 34667777887766666665553
No 96
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.51 E-value=1.5e-13 Score=112.87 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=64.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHh--cCCcc---CCCeEEEEcCCCcccCCCCcccchhhHHhHcCC---------
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIAR--VLSDE---FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV--------- 69 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g--~l~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 69 (224)
--+++|++++|+||||||||||++.+++ .+++. ..+.+.+++...... +.......+.+++
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~ 93 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFR-----PERLLAVAERYGLSGSDVLDNV 93 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC-----HHHHHHHHHHTTCCHHHHHHTE
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcC-----HHHHHHHHHHcCCCHHHHhhCe
Confidence 3589999999999999999999999999 45441 135566664332110 0000001111111
Q ss_pred -----CCccHHHH-HH--HHHHHhcCCCEEEEeCCCChHhHH-------H-----H-------HHH-HHcCCEEEEEEeC
Q 027390 70 -----PEPSLQHK-VM--IEAVENHMPEVIIVDEIGTEAEAH-------A-----C-------RSI-AERGVMLIGTAHG 121 (224)
Q Consensus 70 -----~~~g~~qr-~~--la~al~~~p~llilDEp~~~lD~~-------~-----~-------~~~-~~~g~tvi~~tH~ 121 (224)
.+..+... +. ...+...+|+++++|||++.+|.. . + ..+ ++.++|||+++|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~ 173 (243)
T 1n0w_A 94 AYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQV 173 (243)
T ss_dssp EEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--
T ss_pred EEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeee
Confidence 11222111 11 122223689999999999987642 1 1 122 3458999999998
Q ss_pred cchHH
Q 027390 122 EWLEN 126 (224)
Q Consensus 122 ~~~~~ 126 (224)
....+
T Consensus 174 ~~~~~ 178 (243)
T 1n0w_A 174 VAQVD 178 (243)
T ss_dssp -----
T ss_pred eecCC
Confidence 65443
No 97
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.50 E-value=4.9e-14 Score=119.27 Aligned_cols=118 Identities=13% Similarity=0.137 Sum_probs=71.6
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc---------CCCeEEEEcCCCcccC--------CCCcccch-hhHHhH
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDE---------FQKRVVIVDTSNEIGG--------DGDIPHSA-IGTARR 66 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~---------~~~~i~~~~~~~~~~~--------~~~~~~~~-~~~~~~ 66 (224)
-+++|++++|+||||||||||++.+++.+... ..+.+.|+........ ...+.... ....+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~ 105 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADG 105 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCc
Confidence 58899999999999999999999999866431 0245666543221100 00000000 000111
Q ss_pred ----------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCC--hHhH------H----HHHHHH-HcCCEEEEEEeCcc
Q 027390 67 ----------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT--EAEA------H----ACRSIA-ERGVMLIGTAHGEW 123 (224)
Q Consensus 67 ----------~~~~~~g~~qr~~la~al~~~p~llilDEp~~--~lD~------~----~~~~~~-~~g~tvi~~tH~~~ 123 (224)
....++|+.++ +++++.+|++||+|||++ ++|. . .+..+. +.|+|||+++|...
T Consensus 106 l~l~~~~~~~~~~ls~g~~~~---i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 106 LLIQPLIGSLPNIMAPEWFDG---LKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp EEECCCTTSCCCTTSHHHHHH---HHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred eEEeecCCCCcccCCHHHHHH---HHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 12235676554 356778999999999999 7763 1 233443 56999999999986
Q ss_pred hH
Q 027390 124 LE 125 (224)
Q Consensus 124 ~~ 125 (224)
..
T Consensus 183 ~~ 184 (279)
T 1nlf_A 183 GA 184 (279)
T ss_dssp --
T ss_pred cc
Confidence 54
No 98
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.49 E-value=4e-16 Score=134.42 Aligned_cols=125 Identities=11% Similarity=0.083 Sum_probs=82.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-EcCCCcccCCCCccc-----------chhhHHhH-----
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-VDTSNEIGGDGDIPH-----------SAIGTARR----- 66 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-~~~~~~~~~~~~~~~-----------~~~~~~~~----- 66 (224)
-.|++|++++|+||||||||||+++|+|++ .|.|.. +.+...+... .+.. ......+.
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~v~q~~~lf~~-ti~~~ni~~~~~~~~~~~~~i~~~L~~g 195 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSFANHKSHFWLA-SLADTRAALVDDATHACWRYFDTYLRNA 195 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEECGGGTTSGGGGG-GGTTCSCEEEEEECHHHHHHHHHTTTGG
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEEEecCccccccc-cHHHHhhccCccccHHHHHHHHHHhHcc
Confidence 468999999999999999999999999998 366653 3443322110 0000 00001111
Q ss_pred --cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEE
Q 027390 67 --MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 144 (224)
Q Consensus 67 --~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~ 144 (224)
..-.|+||+|| |||++.+|++|| |++||...-..+.. .+|+.... ..||++ . + .+|+++.
T Consensus 196 ldg~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-------ltH~~~~~-~~aD~i-v-l-~~G~iv~ 257 (305)
T 2v9p_A 196 LDGYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-------LHSRVQTF-RFEQPC-T-D-ESGEQPF 257 (305)
T ss_dssp GGTCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-------GTTTEEEE-ECCCCC-C-C-C---CCC
T ss_pred CCccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-------HhCCHHHH-HhCCEE-E-E-eCCEEEE
Confidence 12247899999 999999999999 99999654333321 28887744 579998 4 5 5577788
Q ss_pred cCCHHHH
Q 027390 145 LGDEEAR 151 (224)
Q Consensus 145 ~~~~~~~ 151 (224)
.++.+..
T Consensus 258 ~g~~~el 264 (305)
T 2v9p_A 258 NITDADW 264 (305)
T ss_dssp CCCHHHH
T ss_pred eCCHHHH
Confidence 8887765
No 99
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.49 E-value=1.6e-14 Score=114.36 Aligned_cols=103 Identities=18% Similarity=0.137 Sum_probs=63.5
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHH
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 84 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al 84 (224)
.+++|+.++|+||||+|||||++++++.+.+..+..+.++..... ............ .+ -....
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~------~~---~~~~~ 97 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL-------IFRLKHLMDEGK------DT---KFLKT 97 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH-------HHHHHHHHHHTC------CS---HHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH-------HHHHHHHhcCch------HH---HHHHH
Confidence 356799999999999999999999999997553334433321100 000000011100 00 11122
Q ss_pred hcCCCEEEEeCCCC-hHhHH-------HHHHHHHcCCEEEEEEeCcc
Q 027390 85 NHMPEVIIVDEIGT-EAEAH-------ACRSIAERGVMLIGTAHGEW 123 (224)
Q Consensus 85 ~~~p~llilDEp~~-~lD~~-------~~~~~~~~g~tvi~~tH~~~ 123 (224)
..+|++|+||||++ ++|.. .+....+.++++|++||...
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 35899999999985 67643 23344567899999999853
No 100
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.49 E-value=1.5e-13 Score=118.41 Aligned_cols=114 Identities=21% Similarity=0.227 Sum_probs=76.1
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcc-c------------CCCCcccc-------h----hh-
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI-G------------GDGDIPHS-------A----IG- 62 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~-~------------~~~~~~~~-------~----~~- 62 (224)
+|++++|+||||||||||+++|+|++.|+ +++|.+.+.+..- . ....+.+. . ..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999987 7888887543110 0 00011110 0 00
Q ss_pred -HHhH--------cCCC-------CccHHHHHHHHHHHhcCCC--EEEEeCCCChHh-HHHHHHHHH-cCCEEEEEEeCc
Q 027390 63 -TARR--------MQVP-------EPSLQHKVMIEAVENHMPE--VIIVDEIGTEAE-AHACRSIAE-RGVMLIGTAHGE 122 (224)
Q Consensus 63 -~~~~--------~~~~-------~~g~~qr~~la~al~~~p~--llilDEp~~~lD-~~~~~~~~~-~g~tvi~~tH~~ 122 (224)
.... .+.. +...+||+++|+++..+|+ ++.|| |+++.+ .+.+..+.+ .+.|+|++||+.
T Consensus 180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 180 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 0000 1111 1234789999999999999 77888 555544 455666654 489999999985
Q ss_pred c
Q 027390 123 W 123 (224)
Q Consensus 123 ~ 123 (224)
.
T Consensus 259 ~ 259 (304)
T 1rj9_A 259 G 259 (304)
T ss_dssp S
T ss_pred c
Confidence 4
No 101
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.48 E-value=8.9e-14 Score=107.74 Aligned_cols=66 Identities=9% Similarity=-0.013 Sum_probs=53.9
Q ss_pred CCCCccHHHHHHHH------HHHhcCCCEEEEeCCCChHhHHHH-------HHHHHcCCEEEEEEeCcchHHhhccceee
Q 027390 68 QVPEPSLQHKVMIE------AVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 68 ~~~~~g~~qr~~la------~al~~~p~llilDEp~~~lD~~~~-------~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
.-.|+||+||++|| ++++.+|+++||||||++||.... .++.+.|.|||++||+.+ ...+||+++.
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d~ii~ 134 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADHVIR 134 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSEEEE
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCCEEEE
Confidence 34589999999876 889999999999999999996543 333455889999999985 5678999864
No 102
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.47 E-value=2.4e-15 Score=121.12 Aligned_cols=26 Identities=38% Similarity=0.801 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
|++++|+||||||||||+++|+|++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 78999999999999999999999986
No 103
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.46 E-value=8.9e-14 Score=107.69 Aligned_cols=83 Identities=16% Similarity=0.184 Sum_probs=59.7
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhcC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 87 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~~ 87 (224)
+|+.++|+||||+|||||++++++.+.+. +.++.+++...... . ++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~~~~~~~~~~~~-------~-----------------------~~~~~ 83 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKNAAYIDAASMPL-------T-----------------------DAAFE 83 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCCEEEEETTTSCC-------C-----------------------GGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCcEEEEcHHHhhH-------H-----------------------HHHhC
Confidence 79999999999999999999999998764 44455554322110 0 22467
Q ss_pred CCEEEEeCCCChHhH------HHHHHHHHcCCE-EEEEEeC
Q 027390 88 PEVIIVDEIGTEAEA------HACRSIAERGVM-LIGTAHG 121 (224)
Q Consensus 88 p~llilDEp~~~lD~------~~~~~~~~~g~t-vi~~tH~ 121 (224)
|++|++|||++..+. ..+..+.++|.+ +|++||.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 999999999884331 234455677887 8888885
No 104
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.45 E-value=1.6e-13 Score=120.69 Aligned_cols=127 Identities=16% Similarity=0.171 Sum_probs=83.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHH-hHcCCC-CccHHHHHHHH
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTA-RRMQVP-EPSLQHKVMIE 81 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~g~~qr~~la 81 (224)
-.+++|++++|+||||||||||+++|+|+++++ .|.+.+-+. .++... .......... ...... ..+..++..++
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie~~-~e~~~~-~~~~~v~~v~~q~~~~~~~~~~t~~~~i~ 246 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIEDV-PELFLP-DHPNHVHLFYPSEAKEEENAPVTAATLLR 246 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEESS-SCCCCT-TCSSEEEEECC----------CCHHHHHH
T ss_pred HHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEECCc-cccCcc-ccCCEEEEeecCccccccccccCHHHHHH
Confidence 367899999999999999999999999999987 577766543 222110 0111100000 000000 13456778899
Q ss_pred HHHhcCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027390 82 AVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 82 ~al~~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
.++..+|+.+++||+....-.+.++.+.....|++.++|..+ +...++|+..
T Consensus 247 ~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~ 298 (361)
T 2gza_A 247 SCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGS-CELTFERLAL 298 (361)
T ss_dssp HHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSS-HHHHHHHHHH
T ss_pred HHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHH
Confidence 999999999999999875333445555433457899999987 7778888853
No 105
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.44 E-value=1.1e-14 Score=121.21 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=71.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc----CCCeEEEEcCCCcccCCC-------------Cc--ccc----
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVIVDTSNEIGGDG-------------DI--PHS---- 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~----~~~~i~~~~~~~~~~~~~-------------~~--~~~---- 59 (224)
+-.+++|++++|+||||||||||+++|+|++... ....+.+++++. +.... .+ +..
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDHPDAFDND 97 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTSGGGBCHH
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc-CccccCHhHhhhhhccCCCCCCcccccHH
Confidence 3468899999999999999999999999976421 123455665542 11100 00 000
Q ss_pred -hhhHHhHc--------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCc
Q 027390 60 -AIGTARRM--------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGE 122 (224)
Q Consensus 60 -~~~~~~~~--------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~ 122 (224)
.....+.+ ...|+|++||+.+ ++++.+|+++|+|||....+... ..+ .+.+|++++|+.
T Consensus 98 ~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l-~~~--~~~~i~v~th~~ 165 (245)
T 2jeo_A 98 LMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEI-RDM--FHLRLFVDTDSD 165 (245)
T ss_dssp HHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHH-HTT--CSEEEEEECCHH
T ss_pred HHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHH-HHh--cCeEEEEECCHH
Confidence 00111111 1235778888766 46678899999999987766442 222 378999999973
No 106
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.44 E-value=1.6e-14 Score=126.56 Aligned_cols=130 Identities=16% Similarity=0.142 Sum_probs=84.9
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-cc----cC--------------CCCcc-cc-h---
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EI----GG--------------DGDIP-HS-A--- 60 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-~~----~~--------------~~~~~-~~-~--- 60 (224)
.|.+|++++|+||||||||||+++|+|+..++ .+.+.+.+++. ++ .. ....+ .. .
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~-~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~ 145 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGASAD-IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAA 145 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHSCCS-EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHH
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCCCCC-EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHH
Confidence 58899999999999999999999999999987 45666654431 10 00 00000 00 0
Q ss_pred ---hhHHhHcCC--------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHH-------HH--HcCC-
Q 027390 61 ---IGTARRMQV--------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS-------IA--ERGV- 113 (224)
Q Consensus 61 ---~~~~~~~~~--------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~-------~~--~~g~- 113 (224)
....+.+.- .++|| |++++| +.+|++ |+|+|+..... +. +.|.
T Consensus 146 ~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~Gsi 215 (347)
T 2obl_A 146 FTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSI 215 (347)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEE
T ss_pred HHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCe
Confidence 011111100 13677 788888 578877 89999765433 22 2366
Q ss_pred ----EEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHH
Q 027390 114 ----MLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEE 149 (224)
Q Consensus 114 ----tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~ 149 (224)
||+++||+++ +.+||+++ .+.+|++++.++..
T Consensus 216 T~~~tVl~~thdl~--~~i~d~v~--~i~dG~Ivl~~~l~ 251 (347)
T 2obl_A 216 TAIYTVLLESDNVN--DPIGDEVR--SILDGHIVLTRELA 251 (347)
T ss_dssp EEEEEEECCSSCCC--CHHHHHHH--HHCSEEEEBCHHHH
T ss_pred eeEEEEEEeCCCCC--ChhhhheE--EeeCcEEEEeCCHH
Confidence 8999999998 67899986 55667887764433
No 107
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.42 E-value=1.7e-14 Score=130.00 Aligned_cols=129 Identities=13% Similarity=0.122 Sum_probs=83.7
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-cc-----------------cCC--CCcc---c---
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EI-----------------GGD--GDIP---H--- 58 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-~~-----------------~~~--~~~~---~--- 58 (224)
.+.+|++++|+||||||||||+++|+|+..++ .+.+.+.+++. ++ .+. ...+ .
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~-~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v 231 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD-VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQG 231 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS-EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHH
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccCCC-eEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHH
Confidence 58899999999999999999999999999887 46666655420 00 000 0000 0
Q ss_pred --chhhHHhHcCC--------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH---H----HHH---c-
Q 027390 59 --SAIGTARRMQV--------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S----IAE---R- 111 (224)
Q Consensus 59 --~~~~~~~~~~~--------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~---~----~~~---~- 111 (224)
.....++.+.. .++|+ ||+++| +.+|++ |+++|+.... + +.+ .
T Consensus 232 ~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~ 301 (438)
T 2dpy_A 232 AAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGG 301 (438)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTS
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCC
Confidence 00000111100 13677 899888 688888 9999954322 2 222 2
Q ss_pred CC-----EEEEEEeCcchHHhhccceeeeccCCeeEEEcCCH
Q 027390 112 GV-----MLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 148 (224)
Q Consensus 112 g~-----tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~ 148 (224)
|. ||+++||+++ ..+||+++ .+.+|++++.++.
T Consensus 302 GsiT~~~tVlv~tHdl~--~~iad~v~--~l~dG~Ivl~~~~ 339 (438)
T 2dpy_A 302 GSITAFYTVLTEGDDQQ--DPIADSAR--AILDGHIVLSRRL 339 (438)
T ss_dssp CEEEEEEEEECSSSCSC--CHHHHHHH--HHSSEEEEECHHH
T ss_pred CcccceeEEEEeCCCcc--chhhceEE--EEeCcEEEEeCCH
Confidence 53 8999999998 57899986 4566777776444
No 108
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.40 E-value=2.4e-13 Score=131.81 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=68.4
Q ss_pred CCccHHHHHHHHHHHhcCCC--EEEEeCCCChHhHH-------HHHHHHHcCCEEEEEEeCcchHHhhccceeeec----
Q 027390 70 PEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDL---- 136 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~~p~--llilDEp~~~lD~~-------~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l---- 136 (224)
.|+||+||++||++|+.+|+ +|||||||++||+. .++++++.|.|||+++|+++++. .||+++. |
T Consensus 465 LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~-~aD~ii~-lgpga 542 (916)
T 3pih_A 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIR-NADHIID-IGPGG 542 (916)
T ss_dssp CCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHH-TCSEEEE-EESSS
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEE-EcCCc
Confidence 37999999999999999877 99999999999943 34556677999999999998776 4999974 4
Q ss_pred -cCCeeEEEcCCHHHHHH
Q 027390 137 -IGGVDTVTLGDEEARAR 153 (224)
Q Consensus 137 -~~~~~~v~~~~~~~~~~ 153 (224)
.++|+++..|+++....
T Consensus 543 g~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 543 GTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp GGGCSEEEEEECHHHHHH
T ss_pred ccCCCEEEEeechhhhhc
Confidence 16788999999987654
No 109
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.35 E-value=6.8e-12 Score=111.79 Aligned_cols=113 Identities=15% Similarity=0.220 Sum_probs=66.2
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHH--HhcCCccC---CCeEEEEcCCCcccCCCCcccchhhHHhHcCCC---------
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREI--ARVLSDEF---QKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP--------- 70 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i--~g~l~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 70 (224)
-|++|++++|+||||||||||++.+ +++++++. ++.+.|++....+. +.......+++++.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~-----~~rl~~~a~~~gl~~~~vleni~ 248 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR-----PVRLVSIAQRFGLDPDDALNNVA 248 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC-----HHHHHHHHHHTTCCHHHHHHTEE
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC-----HHHHHHHHHHcCCChHhHhhcEE
Confidence 4789999999999999999999954 56665532 35677765432210 11111111222221
Q ss_pred ----CccHHHHHHH----HHHHhcCCCEEEEeCCCChHhHH-------------------HHHHHH-HcCCEEEEEEeCc
Q 027390 71 ----EPSLQHKVMI----EAVENHMPEVIIVDEIGTEAEAH-------------------ACRSIA-ERGVMLIGTAHGE 122 (224)
Q Consensus 71 ----~~g~~qr~~l----a~al~~~p~llilDEp~~~lD~~-------------------~~~~~~-~~g~tvi~~tH~~ 122 (224)
.....+...+ ..+...+|+++++|||++.++.+ .+..+. +.++|||+++|..
T Consensus 249 ~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 249 YARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred EeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 1122222222 22223679999999998876521 123343 4599999999983
No 110
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.34 E-value=2.8e-12 Score=105.36 Aligned_cols=116 Identities=9% Similarity=0.043 Sum_probs=66.0
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCc-cCCCeEEEEcCCCc---ccCCCCcccch--hhH-------HhHcCCC-
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSD-EFQKRVVIVDTSNE---IGGDGDIPHSA--IGT-------ARRMQVP- 70 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~-~~~~~i~~~~~~~~---~~~~~~~~~~~--~~~-------~~~~~~~- 70 (224)
..++|++++|+||||||||||+++|+|+.+| ...+.+.+...... .....+++... +.. .+...+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~ 91 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG 91 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence 3689999999999999999999999999975 22344444322111 01111111110 000 0111110
Q ss_pred -CccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHHHH---HcCCEEEEEEeCcchHHh
Q 027390 71 -EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA---ERGVMLIGTAHGEWLENI 127 (224)
Q Consensus 71 -~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~~~---~~g~tvi~~tH~~~~~~~ 127 (224)
..|.... . +...+..++++||| +|+.....+. ..+.+|++++|++++...
T Consensus 92 ~~yg~~~~-~-v~~~l~~G~illLD-----LD~~~~~~i~~~l~~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 92 NYYGTSRE-A-IEQVLATGVDVFLD-----IDWQGAQQIRQKMPHARSIFILPPSKIELDR 145 (219)
T ss_dssp EEEEEEHH-H-HHHHHTTTCEEEEE-----CCHHHHHHHHHHCTTCEEEEEECSSHHHHHH
T ss_pred ccCCCCHH-H-HHHHHhcCCeEEEE-----ECHHHHHHHHHHccCCEEEEEECCCHHHHHH
Confidence 1122211 1 23344678999999 8877655543 357899999999876554
No 111
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.31 E-value=2.2e-12 Score=125.34 Aligned_cols=82 Identities=15% Similarity=0.089 Sum_probs=68.7
Q ss_pred CCccHHHHHHHHHHHhcC--CCEEEEeCCCChHhHH-------HHHHHHHcCCEEEEEEeCcchHHhhccceeeecc---
Q 027390 70 PEPSLQHKVMIEAVENHM--PEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI--- 137 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~~--p~llilDEp~~~lD~~-------~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~--- 137 (224)
.|+||+||++||++|..+ |++|||||||++||+. .++++++.|.|||+++|++++.. .||+++. |-
T Consensus 522 LSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~-Lgp~a 599 (993)
T 2ygr_A 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADWIVD-IGPGA 599 (993)
T ss_dssp CCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSEEEE-ECSSS
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCEEEE-ecCcc
Confidence 379999999999999998 5999999999999954 34567788999999999998765 7999974 52
Q ss_pred --CCeeEEEcCCHHHHHH
Q 027390 138 --GGVDTVTLGDEEARAR 153 (224)
Q Consensus 138 --~~~~~v~~~~~~~~~~ 153 (224)
++|+++..++++....
T Consensus 600 G~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 600 GEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp GGGCCSCCEEECHHHHHH
T ss_pred ccCCCEEEEeeCHHHhhh
Confidence 5788888888887654
No 112
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.30 E-value=2.4e-12 Score=124.73 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=66.9
Q ss_pred CccHHHHHHHHHHHhcCC--CEEEEeCCCChHhH-------HHHHHHHHcCCEEEEEEeCcchHHhhccceeeecc----
Q 027390 71 EPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI---- 137 (224)
Q Consensus 71 ~~g~~qr~~la~al~~~p--~llilDEp~~~lD~-------~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~---- 137 (224)
|+||+||++||++|..+| ++|||||||++||+ +.++++++.|.|||+++|++++.. .||+++. |-
T Consensus 506 SGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~-LgpgaG 583 (972)
T 2r6f_A 506 SGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLID-IGPGAG 583 (972)
T ss_dssp CHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEE-ECSSSG
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEE-eCCCcc
Confidence 699999999999999984 99999999999994 345667788999999999998765 6999974 42
Q ss_pred -CCeeEEEcCCHHHHH
Q 027390 138 -GGVDTVTLGDEEARA 152 (224)
Q Consensus 138 -~~~~~v~~~~~~~~~ 152 (224)
++|+++..++++...
T Consensus 584 ~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 584 IHGGEVVAAGTPEEVM 599 (972)
T ss_dssp GGCCSEEEEECTTTTT
T ss_pred CCCCEEEEecCHHHHH
Confidence 578888888776543
No 113
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.29 E-value=3.7e-13 Score=118.29 Aligned_cols=128 Identities=10% Similarity=0.103 Sum_probs=72.1
Q ss_pred cccceec--CcEEEEEcCCCCcHHHHHHHHHhcCCccCC----CeEEEEcC--CCcccC-CCCcccchhh--------H-
Q 027390 2 VYDLLHY--GKSILFVGRPGVGKTTVMREIARVLSDEFQ----KRVVIVDT--SNEIGG-DGDIPHSAIG--------T- 63 (224)
Q Consensus 2 ~~~~i~~--Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~----~~i~~~~~--~~~~~~-~~~~~~~~~~--------~- 63 (224)
|...|.+ |+.++|+||||||||||+++|+|++.++ . |++.+... ...... ...+ ..... .
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~-~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~~~~ 238 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT-SAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYIDYAV 238 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE-EECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC-cchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHHHHH
Confidence 4557788 9999999999999999999999999887 3 44432100 111110 0011 00000 0
Q ss_pred --HhHcCC--C----------CccHHHHHHHHHHH-hcCCCEEEEeC---CC------ChHhH-------HHHHHHH-Hc
Q 027390 64 --ARRMQV--P----------EPSLQHKVMIEAVE-NHMPEVIIVDE---IG------TEAEA-------HACRSIA-ER 111 (224)
Q Consensus 64 --~~~~~~--~----------~~g~~qr~~la~al-~~~p~llilDE---p~------~~lD~-------~~~~~~~-~~ 111 (224)
.+.+.+ . ++|++++..++++. ..+|++++||| |+ .++|. ..+.++. +.
T Consensus 239 t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~ 318 (365)
T 1lw7_A 239 RHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKY 318 (365)
T ss_dssp HHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGG
T ss_pred hccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHc
Confidence 000000 0 12334555566655 46999999999 65 35662 2233333 44
Q ss_pred CCEEEEEEeCcchHHhhccce
Q 027390 112 GVMLIGTAHGEWLENIIKNPI 132 (224)
Q Consensus 112 g~tvi~~tH~~~~~~~~~d~v 132 (224)
+.++++++|.. ..+.+++.+
T Consensus 319 ~~~ililde~~-~~~r~~~~i 338 (365)
T 1lw7_A 319 KVPYIEIESPS-YLDRYNQVK 338 (365)
T ss_dssp GCCCEEEECSS-HHHHHHHHH
T ss_pred CCCEEEeCCCC-HHHHHHHHH
Confidence 88999999874 456677665
No 114
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.29 E-value=3.4e-15 Score=120.86 Aligned_cols=113 Identities=20% Similarity=0.187 Sum_probs=69.5
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCC------------Ccccc-----hhhHHhHcC
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG------------DIPHS-----AIGTARRMQ 68 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~------------~~~~~-----~~~~~~~~~ 68 (224)
.++|++++|+||||||||||+++|+|++.+ .+.+++++....... ..+.. .....+.++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALL 78 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHH
Confidence 578999999999999999999999999865 355555543221100 00000 000011111
Q ss_pred C----------CCccH----HHHHHHHHHHhcCCCEEEEeCCCCh-------HhHH----H---HHH-HHHcCCEEEEEE
Q 027390 69 V----------PEPSL----QHKVMIEAVENHMPEVIIVDEIGTE-------AEAH----A---CRS-IAERGVMLIGTA 119 (224)
Q Consensus 69 ~----------~~~g~----~qr~~la~al~~~p~llilDEp~~~-------lD~~----~---~~~-~~~~g~tvi~~t 119 (224)
. .+.|+ +||+.++++++.+|+++++|||+++ +|.. . +.+ ..++|.|++.++
T Consensus 79 ~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~ 158 (211)
T 3asz_A 79 RGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVV 158 (211)
T ss_dssp TTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred cCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 1 12343 4566778888889999999999988 6731 1 222 234588988888
Q ss_pred eCc
Q 027390 120 HGE 122 (224)
Q Consensus 120 H~~ 122 (224)
|+.
T Consensus 159 ~~~ 161 (211)
T 3asz_A 159 AQY 161 (211)
T ss_dssp HHH
T ss_pred HHH
Confidence 873
No 115
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.25 E-value=1.5e-13 Score=128.53 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCccCCCeE
Q 027390 11 SILFVGRPGVGKTTVMREIARVLSDEFQKRV 41 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i 41 (224)
.++|+||||||||||+++|+|+..|...|.|
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~v 77 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIV 77 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------C
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeE
Confidence 3999999999999999999999877214544
No 116
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.25 E-value=5.7e-12 Score=121.29 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=66.4
Q ss_pred CccHHHHHHHHHHHhcCC--CEEEEeCCCChHhH-------HHHHHHHHcCCEEEEEEeCcchHHhhccceeeecc----
Q 027390 71 EPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI---- 137 (224)
Q Consensus 71 ~~g~~qr~~la~al~~~p--~llilDEp~~~lD~-------~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~---- 137 (224)
|+||+||+.||++|..+| .+|||||||++||+ +.++.+++.|.|||+++|++++.. .||+++. |-
T Consensus 381 SGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~-~aD~ii~-lgpgaG 458 (842)
T 2vf7_A 381 SPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR-RADWLVD-VGPEAG 458 (842)
T ss_dssp CHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT-TCSEEEE-ECSSSG
T ss_pred CHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH-hCCEEEE-eCCCcc
Confidence 689999999999999999 49999999999983 345567788999999999998664 6999974 42
Q ss_pred -CCeeEEEcCCHHHHH
Q 027390 138 -GGVDTVTLGDEEARA 152 (224)
Q Consensus 138 -~~~~~v~~~~~~~~~ 152 (224)
++|+++..++++...
T Consensus 459 ~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 459 EKGGEILYSGPPEGLK 474 (842)
T ss_dssp GGCCSEEEEECGGGGG
T ss_pred cCCCEEEEecCHHHHH
Confidence 567888888876544
No 117
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.23 E-value=1.2e-10 Score=95.42 Aligned_cols=130 Identities=13% Similarity=0.053 Sum_probs=69.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCccc-------CCCCcccchhh--H-------HhHc
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-------GDGDIPHSAIG--T-------ARRM 67 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~--~-------~~~~ 67 (224)
--+++|++++|.||||||||||+..++....+. ++.+.|+....... ..+...+.... . ...+
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~ 96 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGI 96 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTTT
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEecchhhc
Confidence 357899999999999999999966665444333 56777765432100 00000000000 0 0000
Q ss_pred C---------CC-CccHHHHH-HHHHHH-hcCCCEEEEeCCCChH--hH----HH---HH-HHHHcCCEEEEEEeCcch-
Q 027390 68 Q---------VP-EPSLQHKV-MIEAVE-NHMPEVIIVDEIGTEA--EA----HA---CR-SIAERGVMLIGTAHGEWL- 124 (224)
Q Consensus 68 ~---------~~-~~g~~qr~-~la~al-~~~p~llilDEp~~~l--D~----~~---~~-~~~~~g~tvi~~tH~~~~- 124 (224)
+ .. .....+.. .+..++ ..+|+++++|+|+..+ |. +. +. .+++.+++||+++|....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~ 176 (247)
T 2dr3_A 97 GKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGE 176 (247)
T ss_dssp CC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC---
T ss_pred ccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCc
Confidence 0 00 11111111 122222 2689999999998765 32 11 22 235678999999998754
Q ss_pred -------HHhhccceee
Q 027390 125 -------ENIIKNPILS 134 (224)
Q Consensus 125 -------~~~~~d~v~~ 134 (224)
.+..||.++.
T Consensus 177 ~~~~~~~~~~~~D~vi~ 193 (247)
T 2dr3_A 177 RGFGGPGVEHGVDGIIR 193 (247)
T ss_dssp -CCC-CCHHHHSSEEEE
T ss_pred ccccccccceeEEEEEE
Confidence 2456777653
No 118
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.21 E-value=3.1e-11 Score=104.89 Aligned_cols=115 Identities=23% Similarity=0.216 Sum_probs=72.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcc--------------c--C----CCCcccch----hh
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI--------------G--G----DGDIPHSA----IG 62 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~--------------~--~----~~~~~~~~----~~ 62 (224)
++|++++|+||||||||||++.|+|++.++ +++|.+.+.+... + . ....+... ..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 679999999999999999999999999987 7888876533110 0 0 00011100 00
Q ss_pred --HHhHc--------CCC---CccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHHHH-HcCCEEEEEEeCc
Q 027390 63 --TARRM--------QVP---EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA-ERGVMLIGTAHGE 122 (224)
Q Consensus 63 --~~~~~--------~~~---~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~~~-~~g~tvi~~tH~~ 122 (224)
..... +.. ..-+.+...+++++..++.+++||.++..--.+.++.+. +.+.++|++||..
T Consensus 206 ~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 206 HAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 00111 111 112333445788888899999999666532234455665 4588999999964
No 119
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.17 E-value=2.7e-11 Score=111.13 Aligned_cols=62 Identities=10% Similarity=0.076 Sum_probs=53.6
Q ss_pred CccHHHHHHHHHHHhcCC--CEEEEeCCCChHhHH-------HHHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027390 71 EPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 71 ~~g~~qr~~la~al~~~p--~llilDEp~~~lD~~-------~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
|+||+||++||++++.+| ++|||||||++||.. .+.++.+ +.|||++||+++++. .||+++.
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~~~ 469 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHHYK 469 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEEE
Confidence 799999999999999999 999999999999943 3445555 899999999998775 6999974
No 120
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.16 E-value=2.5e-11 Score=104.55 Aligned_cols=89 Identities=24% Similarity=0.246 Sum_probs=63.4
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCC-----CCccHHHHH--
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-----PEPSLQHKV-- 78 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~qr~-- 78 (224)
.++|++++|+|||||||||+++.|++.+.+. ++++.+.+.+.... ....+.....++.++ .++++.+++
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D~~r~---~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~ 176 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAADTFRA---AAIEQLKIWGERVGATVISHSEGADPAAVAF 176 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECTTCH---HHHHHHHHHHHHHTCEEECCSTTCCHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEccccccH---HHHHHHHHHHHHcCCcEEecCCccCHHHHHH
Confidence 4678999999999999999999999999876 67888775432110 000111111222222 356778887
Q ss_pred -HHHHHHhcCCCEEEEeCCCC
Q 027390 79 -MIEAVENHMPEVIIVDEIGT 98 (224)
Q Consensus 79 -~la~al~~~p~llilDEp~~ 98 (224)
++++++..+|+++|+|+|..
T Consensus 177 ~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 177 DAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHhcCCCEEEEECCCc
Confidence 78888999999999999976
No 121
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.15 E-value=9.1e-11 Score=107.61 Aligned_cols=115 Identities=23% Similarity=0.221 Sum_probs=71.4
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHH
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEA 82 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~ 82 (224)
+.++++|++++|+||||||||||+++|+|+++|+ .+.+.+-+ ..++.... +....... +-.+..++....-.+..
T Consensus 254 ~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~-~giitied-~~E~~~~~--~~~v~~~~-r~~~~~~~~~~~~~l~~ 328 (511)
T 2oap_1 254 WLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD-AKVVSIED-TREIKLYH--ENWIAEVT-RTGMGEGEIDMYDLLRA 328 (511)
T ss_dssp HHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT-CCEEEEES-SCCCCCCC--SSEEEEEC-BCCSSSCCBCHHHHHHT
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC-CCEEEEcC-cccccCCC--CCeEEEEe-ecccccCCcCHHHHHHH
Confidence 4467899999999999999999999999999886 45555433 33332110 00000000 00111122222334666
Q ss_pred HHhcCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcc
Q 027390 83 VENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEW 123 (224)
Q Consensus 83 al~~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~ 123 (224)
++.++|+.++++|.+... ...+-+....|..++.|.|..+
T Consensus 329 ~LR~~PD~iivgEir~~E-~~~~l~a~~tGh~~~sT~Ha~~ 368 (511)
T 2oap_1 329 ALRQRPDYIIVGEVRGRE-AQTLFQAMSTGHASYSTLHAGD 368 (511)
T ss_dssp TGGGCCSEEEESCCCSTH-HHHHHHHHHTTCEEEEEEECSS
T ss_pred hhccCCCeEEeCCcCHHH-HHHHHHhhcCCCCcccccccCC
Confidence 777899999999998753 3333333456888888889754
No 122
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.15 E-value=1.6e-12 Score=111.67 Aligned_cols=50 Identities=4% Similarity=-0.037 Sum_probs=35.5
Q ss_pred CCccHHHHHHHHHHHhcCCCEEEEeCCCCh-HhHH---HHHHHHHc-CCEEEEEEeCcc
Q 027390 70 PEPSLQHKVMIEAVENHMPEVIIVDEIGTE-AEAH---ACRSIAER-GVMLIGTAHGEW 123 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~~p~llilDEp~~~-lD~~---~~~~~~~~-g~tvi~~tH~~~ 123 (224)
.++|++||+.+|++++ ++++|||+++ ||.. .++.+.+. +.++|+++||+.
T Consensus 114 ~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 114 ESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred hCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 3577888876666653 9999999874 8854 34444433 678899999963
No 123
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.12 E-value=1.4e-10 Score=99.32 Aligned_cols=120 Identities=17% Similarity=0.087 Sum_probs=71.6
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC----CccHHHHHHHHH
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP----EPSLQHKVMIEA 82 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~qr~~la~ 82 (224)
.+|++++|+|||||||||+++.|++.+.++.+.++.+++.+.... ....+.....+..++. ......+.+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~---~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~- 178 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI---AAVEQLKTYAELLQAPLEVCYTKEEFQQAKE- 178 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST---THHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc---hHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-
Confidence 578999999999999999999999999875355888887543210 1111111111222221 11222344444
Q ss_pred HHhcCCCEEEEeCCCChHh---HHHHHH---HHH----cCCEEEE-EEeCcchHHhhcccee
Q 027390 83 VENHMPEVIIVDEIGTEAE---AHACRS---IAE----RGVMLIG-TAHGEWLENIIKNPIL 133 (224)
Q Consensus 83 al~~~p~llilDEp~~~lD---~~~~~~---~~~----~g~tvi~-~tH~~~~~~~~~d~v~ 133 (224)
.+.+|+++|+| |.++| ...+.+ +.. .+..+++ ++|....+..+++++.
T Consensus 179 -~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~ 237 (296)
T 2px0_A 179 -LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS 237 (296)
T ss_dssp -HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS
T ss_pred -HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh
Confidence 44899999999 55554 223333 221 2234444 4788776777777763
No 124
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.11 E-value=1.6e-10 Score=98.83 Aligned_cols=97 Identities=18% Similarity=0.231 Sum_probs=66.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC--------CccHHHHHH
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP--------EPSLQHKVM 79 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~qr~~ 79 (224)
+|++++++|+||+||||+++.|++.+.+. ++++.+.+.+.... ....+.....+..++. ++...++.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~~~---~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~ 172 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRP---AAREQLRLLGEKVGVPVLEVMDGESPESIRRRV 172 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSSCH---HHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcccH---hHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHH
Confidence 78999999999999999999999999876 78888876543210 0000110111222221 223445778
Q ss_pred HHHHHhcCCCEEEEeCC-CChHhHHHHHHH
Q 027390 80 IEAVENHMPEVIIVDEI-GTEAEAHACRSI 108 (224)
Q Consensus 80 la~al~~~p~llilDEp-~~~lD~~~~~~~ 108 (224)
++.+...++|++|+|+| +.++|...+.++
T Consensus 173 l~~~~~~~~D~viiDtpp~~~~d~~~~~~l 202 (295)
T 1ls1_A 173 EEKARLEARDLILVDTAGRLQIDEPLMGEL 202 (295)
T ss_dssp HHHHHHHTCCEEEEECCCCSSCCHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCCccccHHHHHHH
Confidence 88887789999999999 888886555443
No 125
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.11 E-value=4.6e-10 Score=98.29 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=69.8
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC--------CccHHH
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP--------EPSLQH 76 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~q 76 (224)
-+++|+++.|.||||||||||+..++...... ++.+.|++...... . . .++++++. .....+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~E~~~~------~-~--~a~~lG~~~~~l~i~~~~~~e~ 126 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDAEHALD------P-E--YAKKLGVDTDSLLVSQPDTGEQ 126 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCC------H-H--HHHHTTCCGGGCEEECCSSHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCcC------H-H--HHHHcCCCHHHeEEecCCCHHH
Confidence 47899999999999999999998888766554 57788876532211 0 0 11222221 112233
Q ss_pred HHHHHHHHhc--CCCEEEEeCCCChH----------hH----------HHHHHH----HHcCCEEEEEEeCcc
Q 027390 77 KVMIEAVENH--MPEVIIVDEIGTEA----------EA----------HACRSI----AERGVMLIGTAHGEW 123 (224)
Q Consensus 77 r~~la~al~~--~p~llilDEp~~~l----------D~----------~~~~~~----~~~g~tvi~~tH~~~ 123 (224)
-+.++.+++. +|+++|+|||++.+ |. ..+..+ ++.+++||+++|...
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 4456666654 59999999998754 21 122333 467999999999753
No 126
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.10 E-value=5.8e-10 Score=99.85 Aligned_cols=109 Identities=21% Similarity=0.292 Sum_probs=71.8
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHh
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 85 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~ 85 (224)
..+|++++|+||||||||||+++|+|++.++ .+.|.+.+...+.... ....... ... .|.-..-.+..++.
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~~ed~ie~~~~-~~~q~~v--~~~-----~g~~f~~~lr~~Lr 234 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILTVEDPIEFDID-GIGQTQV--NPR-----VDMTFARGLRAILR 234 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEEEESSCCSCCS-SSEEEEC--BGG-----GTBCHHHHHHHHGG
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEEecccchhccC-CcceEEE--ccc-----cCcCHHHHHHHHhc
Confidence 3689999999999999999999999999887 6888887654332110 0100000 001 12112235566777
Q ss_pred cCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcc
Q 027390 86 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEW 123 (224)
Q Consensus 86 ~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~ 123 (224)
++|+++++.|....+.....-.+...|..++.+-|..+
T Consensus 235 q~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~ 272 (418)
T 1p9r_A 235 QDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNT 272 (418)
T ss_dssp GCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred cCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhh
Confidence 89999999998766555444444567777766668644
No 127
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.04 E-value=3.5e-11 Score=107.74 Aligned_cols=49 Identities=8% Similarity=-0.006 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHhcCCC---EEEEeCCC-ChHhH---HHHHHHHHcCCEEEEEEeCc
Q 027390 73 SLQHKVMIEAVENHMPE---VIIVDEIG-TEAEA---HACRSIAERGVMLIGTAHGE 122 (224)
Q Consensus 73 g~~qr~~la~al~~~p~---llilDEp~-~~lD~---~~~~~~~~~g~tvi~~tH~~ 122 (224)
++++++.++++++.+|+ +|++|||| .++|. ..++.+.. +.++|++.|-.
T Consensus 122 ~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 122 YLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp HTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEEST
T ss_pred HHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcc
Confidence 34556678899999999 99999998 57764 34555554 67777776653
No 128
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.03 E-value=9.5e-13 Score=104.68 Aligned_cols=31 Identities=29% Similarity=0.456 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 43 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~ 43 (224)
|++++|+||||||||||++.|++ +. ++.+.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~-~g~~~i 32 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL-DNSAYI 32 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS-SSEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc-CCeEEE
Confidence 78999999999999999999998 33 355554
No 129
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=99.03 E-value=6.2e-10 Score=97.68 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=92.4
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC--------CccHHH
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP--------EPSLQH 76 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~q 76 (224)
-+++|+++.|.||||||||||+..++....+. ++.+.|++...... +. +++++++. .....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyId~E~s~~-------~~--ra~rlgv~~~~l~i~~~~~~e~ 126 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFIDAEHALD-------PV--YAKNLGVDLKSLLISQPDHGEQ 126 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCC-------HH--HHHHHTCCGGGCEEECCSSHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEecccccc-------hH--HHHHcCCchhhhhhhhccCHHH
Confidence 47899999999999999999999999988765 67788876432221 00 12222221 011123
Q ss_pred HHHHHHHHh--cCCCEEEEeCCCChHh----------------HH----H---HHHH-HHcCCEEEEEEeCcc-h-----
Q 027390 77 KVMIEAVEN--HMPEVIIVDEIGTEAE----------------AH----A---CRSI-AERGVMLIGTAHGEW-L----- 124 (224)
Q Consensus 77 r~~la~al~--~~p~llilDEp~~~lD----------------~~----~---~~~~-~~~g~tvi~~tH~~~-~----- 124 (224)
-+.++..+. ..|+++++|+.++-.. .. . +..+ ++.+.+||++.|... .
T Consensus 127 ~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg 206 (356)
T 3hr8_A 127 ALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFG 206 (356)
T ss_dssp HHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSC
T ss_pred HHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccC
Confidence 333444333 5799999999754221 11 1 2223 345899999999831 1
Q ss_pred ----------HHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhcCCCceeEEEEE-ecce
Q 027390 125 ----------ENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEM-RERH 178 (224)
Q Consensus 125 ----------~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 178 (224)
.+.+++-++. +.... .+..++...-.....+.++++++++.....|++ .+.|
T Consensus 207 ~p~~~~GG~~l~h~~~~rl~-l~k~~-~~k~g~~~~g~~~~vkvvKnr~~~~~~~~~f~i~~~~G 269 (356)
T 3hr8_A 207 SPETTTGGLALKFYATMRME-VRRGE-PIKEGKDVIGNVISVKIVKNKVAPPFKTAQTYIIYGKG 269 (356)
T ss_dssp SCSSCTHHHHHHHHCSEEEE-EEEEE-EEEETTEEEEEEEEEEEEEESSSCCCCEEEEEEETTTB
T ss_pred CcccCCCcchhhhhCcEEEE-EEecc-ccccCCcccccEEEEEEEeCCCCCCCceEEEEEeeCCC
Confidence 2334444432 32211 111121100001223456778888888888998 4555
No 130
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.02 E-value=9.8e-11 Score=91.45 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=32.1
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV 42 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~ 42 (224)
.+++|++++|+||||||||||+|+|+|++ |+ .|.|.
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~-~G~V~ 64 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH-QGNVK 64 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC-CSCCC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC-CCeEE
Confidence 57999999999999999999999999999 76 46554
No 131
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.01 E-value=4.9e-10 Score=101.94 Aligned_cols=41 Identities=34% Similarity=0.417 Sum_probs=36.7
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 46 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~ 46 (224)
.+++|++++|+|+||||||||+++|+|++.++ +|+|.+.+.
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~g~ 329 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAAG 329 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEECC
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEecC
Confidence 47899999999999999999999999999887 788887643
No 132
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.00 E-value=5.3e-10 Score=88.57 Aligned_cols=65 Identities=9% Similarity=0.062 Sum_probs=50.7
Q ss_pred CCCCccHHHHHHHHHHHhc----CCCEEEEeCCCChHhHHHH-------HHHHHcCCEEEEEEeCcchHHhhccceee
Q 027390 68 QVPEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 68 ~~~~~g~~qr~~la~al~~----~p~llilDEp~~~lD~~~~-------~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
...||||+||++||++++. .|+++|||||+++||.... +++. .+.++|++||+... ...||+++.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~-~~~~~ivith~~~~-~~~ad~i~~ 138 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS-KESQFIVITLRDVM-MANADKIIG 138 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHH-HTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc-cCCEEEEEEecHHH-HHhCCEEEE
Confidence 3468999999999999974 4699999999999996533 2222 34689999999764 568999863
No 133
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.99 E-value=3.8e-10 Score=99.13 Aligned_cols=74 Identities=14% Similarity=0.062 Sum_probs=56.9
Q ss_pred CccHHHHHHHHHHHh---------cCCCEEEEeCCCChHhHHHHH----HHHHcCCEEEEEEeCcchHHhhccceeeecc
Q 027390 71 EPSLQHKVMIEAVEN---------HMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPILSDLI 137 (224)
Q Consensus 71 ~~g~~qr~~la~al~---------~~p~llilDEp~~~lD~~~~~----~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~ 137 (224)
|+||+|+++||++|+ .+|++||||||+++||..... .+.+.+.|+|++||. +. .|++++. +
T Consensus 267 S~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~~~i~~-l- 340 (359)
T 2o5v_A 267 SRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GAALTLR-A- 340 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TCSEEEE-E-
T ss_pred CHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cCCEEEE-E-
Confidence 589999999999999 899999999999999965433 233434789999994 43 8888873 4
Q ss_pred CCeeEEEcCCHHH
Q 027390 138 GGVDTVTLGDEEA 150 (224)
Q Consensus 138 ~~~~~v~~~~~~~ 150 (224)
.+|+++..++++.
T Consensus 341 ~~G~i~~~g~~~~ 353 (359)
T 2o5v_A 341 QAGRFTPVADEEM 353 (359)
T ss_dssp ETTEEEECCCTTT
T ss_pred ECCEEEecCCHHH
Confidence 5567777766553
No 134
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.99 E-value=3.6e-10 Score=90.48 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=26.3
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.+.+|..++|+|+||||||||++.|+|..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999999999987
No 135
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=9.7e-10 Score=95.12 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh-cCCccCCCeEE
Q 027390 11 SILFVGRPGVGKTTVMREIAR-VLSDEFQKRVV 42 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g-~l~~~~~~~i~ 42 (224)
.++|.||||+||||+++++++ +..++ .+.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~-~g~i~ 69 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPG-VYRLK 69 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTT-CCC--
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCC-CCeEE
Confidence 399999999999999999999 66665 34443
No 136
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.83 E-value=5.9e-10 Score=96.21 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=34.2
Q ss_pred CccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcchHHhh
Q 027390 71 EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENII 128 (224)
Q Consensus 71 ~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~~~~~ 128 (224)
++|++||+..+++++.+|+++ ||| ..=.+.++.+ +.+.+|+++||+...++.+
T Consensus 143 s~g~~Q~~~ad~ill~k~dl~--de~--~~l~~~l~~l-~~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 143 TIAQSQVGYADRILLTKTDVA--GEA--EKLHERLARI-NARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HHHHHHHHTCSEEEEECTTTC--SCT--HHHHHHHHHH-CSSSCEEECCSSCCCGGGG
T ss_pred hHHHHHHHhCCEEEEECcccC--CHH--HHHHHHHHHh-CCCCeEEEecccCCCHHHH
Confidence 478888887667777778775 888 1112233444 3578999999985434433
No 137
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.81 E-value=7.7e-09 Score=90.93 Aligned_cols=63 Identities=17% Similarity=0.049 Sum_probs=49.3
Q ss_pred CccHHHHH------HHHHHHhcC-CCEEEEeCCCChHhHHHHHH----HHH--cCCEEEEEEeCcchHHhhccceee
Q 027390 71 EPSLQHKV------MIEAVENHM-PEVIIVDEIGTEAEAHACRS----IAE--RGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 71 ~~g~~qr~------~la~al~~~-p~llilDEp~~~lD~~~~~~----~~~--~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
|+||+||+ ++|+++..+ |++||||||+++||...... +.+ .+.+||++||+.. ...+||+++.
T Consensus 282 S~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~~~~ 357 (371)
T 3auy_A 282 SGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADVIIN 357 (371)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCEEEE
Confidence 68999987 456888889 99999999999999654322 222 2468999999987 4678999864
No 138
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.80 E-value=4.9e-09 Score=93.86 Aligned_cols=64 Identities=5% Similarity=0.046 Sum_probs=50.9
Q ss_pred CCccHHHHHHHHHHHh----cCCCEEEEeCCCChHhHHHHH-------HHHHcCCEEEEEEeCcchHHhhccceee
Q 027390 70 PEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 70 ~~~g~~qr~~la~al~----~~p~llilDEp~~~lD~~~~~-------~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
.|+||+|+++||++++ .+|+++|||||+++||..... ++.+.+.++|++||+... ...||+++.
T Consensus 334 lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~-~~~~d~~~~ 408 (430)
T 1w1w_A 334 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM-FEKSDALVG 408 (430)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHH-HTTCSEEEE
T ss_pred CCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHH-HHhCCEEEE
Confidence 3799999999999999 579999999999999965432 222236799999999764 457898854
No 139
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.79 E-value=2.8e-09 Score=85.14 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=26.6
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.+++|++++|+||||||||||+++|+|+++
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999999999974
No 140
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.79 E-value=1.7e-08 Score=91.69 Aligned_cols=95 Identities=20% Similarity=0.361 Sum_probs=60.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhcCCCE
Q 027390 11 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 90 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~~p~l 90 (224)
-++|.||||+|||||+|++++.... .+..+... .+ .... ...++++.|..++.+....|.+
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~----~f~~is~~-~~------~~~~--------~g~~~~~~r~lf~~A~~~~p~I 111 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANV----PFFHISGS-DF------VELF--------VGVGAARVRDLFAQAKAHAPCI 111 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC----CEEEEEGG-GT------TTCC--------TTHHHHHHHHHHHHHHHTCSEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC----CeeeCCHH-HH------HHHH--------hcccHHHHHHHHHHHHhcCCCE
Confidence 3899999999999999999996632 22332211 11 0000 1124567778899998899999
Q ss_pred EEEeCCCC----------hHhH---HH----HHHHH----HcCCEEEEEEeCcch
Q 027390 91 IIVDEIGT----------EAEA---HA----CRSIA----ERGVMLIGTAHGEWL 124 (224)
Q Consensus 91 lilDEp~~----------~lD~---~~----~~~~~----~~g~tvi~~tH~~~~ 124 (224)
|++||+.+ +.+. .. +..+. ..+..||.+||..+.
T Consensus 112 LfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~ 166 (476)
T 2ce7_A 112 VFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDI 166 (476)
T ss_dssp EEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGG
T ss_pred EEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhh
Confidence 99999943 2221 12 22221 246788999998753
No 141
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.77 E-value=2.7e-10 Score=97.30 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=27.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCcc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDE 36 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~ 36 (224)
.++.+++|.|++|||||||++.|++++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 467899999999999999999999999753
No 142
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.75 E-value=1.5e-08 Score=90.70 Aligned_cols=127 Identities=13% Similarity=0.154 Sum_probs=71.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc-------CCCeEEEEcCCC--cc-----cCC-------CCcccchh
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-------FQKRVVIVDTSN--EI-----GGD-------GDIPHSAI 61 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~-------~~~~i~~~~~~~--~~-----~~~-------~~~~~~~~ 61 (224)
+-.++.|+.++|+|+||||||||+++|++..+.. ....+.++.... .+ ... ..+.....
T Consensus 151 ~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl 230 (416)
T 1udx_A 151 RLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFL 230 (416)
T ss_dssp EEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHH
T ss_pred eeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHH
Confidence 3467889999999999999999999999984210 011222222111 00 000 00000000
Q ss_pred hHHh-------HcCC-------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhH------HHHHH-HHHcCCEEEEEE-
Q 027390 62 GTAR-------RMQV-------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA------HACRS-IAERGVMLIGTA- 119 (224)
Q Consensus 62 ~~~~-------~~~~-------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~------~~~~~-~~~~g~tvi~~t- 119 (224)
...+ .+++ .+.+++|++.+++++...|.+|++ +.+|. +.+.+ +.+.+.+++.+|
T Consensus 231 ~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 231 RHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 0000 0111 136789999999999999999998 55552 22222 334566666654
Q ss_pred eCcchHHhhcccee
Q 027390 120 HGEWLENIIKNPIL 133 (224)
Q Consensus 120 H~~~~~~~~~d~v~ 133 (224)
|...-.+.+.+.+.
T Consensus 307 ~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 307 LTGAGLPALKEALH 320 (416)
T ss_dssp TTCTTHHHHHHHHH
T ss_pred CCccCHHHHHHHHH
Confidence 55444555555553
No 143
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.72 E-value=5e-08 Score=87.97 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=34.1
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~ 45 (224)
-+++|+++.|.|+||+|||||+..+++...+..+..+.|+.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 47899999999999999999999999987654244677764
No 144
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.72 E-value=9.4e-09 Score=81.20 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=29.6
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 43 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~ 43 (224)
.+++|++++|+||||||||||+++|++. ++ .+.+.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~-~g~i~i 40 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG-VPKVHF 40 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS-SCEEEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC-CCeEEE
Confidence 4789999999999999999999999998 33 355444
No 145
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.71 E-value=5.4e-09 Score=84.38 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=32.0
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~ 45 (224)
.++|++++|+||||||||||+++|+|++.+. +..+.++.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~~~g~v~ 57 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GLPAEVVP 57 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCceEEEe
Confidence 4789999999999999999999999999864 32344443
No 146
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.67 E-value=6.9e-09 Score=84.95 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=21.7
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHH-hcCC
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIA-RVLS 34 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~-g~l~ 34 (224)
+-.+++|++++|+||||||||||+++|+ ++++
T Consensus 21 sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 21 SMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred CcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3468999999999999999999999999 9874
No 147
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.66 E-value=1.3e-07 Score=82.18 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=63.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchh-hHHhHcCCC--Ccc----HHHHHHHHHH
Q 027390 11 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAI-GTARRMQVP--EPS----LQHKVMIEAV 83 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~g----~~qr~~la~a 83 (224)
.++|.||+|+|||||++.+++.+.+..+..+.+++..... .+.... .....++.. ..+ .... .+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~l~~~ 119 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR-----NFTAIIGEIARSLNIPFPRRGLSRDEFLA-LLVEH 119 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC-----SHHHHHHHHHHHTTCCCCSSCCCHHHHHH-HHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC-----CHHHHHHHHHHHhCccCCCCCCCHHHHHH-HHHHH
Confidence 8999999999999999999998865412345555422111 011111 111222211 111 1111 11112
Q ss_pred H--hcCCCEEEEeCCCChHhHHHHH---HH----HH---cCCEEEEEEeCcchHHhhccce
Q 027390 84 E--NHMPEVIIVDEIGTEAEAHACR---SI----AE---RGVMLIGTAHGEWLENIIKNPI 132 (224)
Q Consensus 84 l--~~~p~llilDEp~~~lD~~~~~---~~----~~---~g~tvi~~tH~~~~~~~~~d~v 132 (224)
+ ...|.+|++||+... |...+. .+ .. .+.++|+++|+.++...+.+++
T Consensus 120 l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~ 179 (389)
T 1fnn_A 120 LRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPST 179 (389)
T ss_dssp HHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHH
T ss_pred HhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHh
Confidence 2 245889999999764 433322 22 22 4678999999876555554443
No 148
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.65 E-value=2.9e-07 Score=80.10 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=65.9
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhc--CCcc---CCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC---------
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARV--LSDE---FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP--------- 70 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~--l~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 70 (224)
-+++|+++.|.||||||||||+..++.. +++. .++.+.|++....+. +......+.++++.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~-----~~~l~~~~~~~g~~~~~~l~~l~ 192 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFR-----PDRLRDIADRFNVDHDAVLDNVL 192 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCC-----HHHHHHHHHHTTCCHHHHHHTEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCC-----HHHHHHHHHHcCCCHHHHHhcee
Confidence 4789999999999999999999999885 3221 246777876433211 11111111222211
Q ss_pred -----CccH-HHHHHHHHHHh----cCCCEEEEeCCCChHhHH----------------H---HHHH-HHcCCEEEEEEe
Q 027390 71 -----EPSL-QHKVMIEAVEN----HMPEVIIVDEIGTEAEAH----------------A---CRSI-AERGVMLIGTAH 120 (224)
Q Consensus 71 -----~~g~-~qr~~la~al~----~~p~llilDEp~~~lD~~----------------~---~~~~-~~~g~tvi~~tH 120 (224)
+..+ .+.+..+..++ .+++++|+|+++.-.... . +..+ ++.+++||+++|
T Consensus 193 ~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 193 YARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp EEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred EeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 1121 12222222333 679999999998744211 1 1222 356899999999
Q ss_pred Ccc
Q 027390 121 GEW 123 (224)
Q Consensus 121 ~~~ 123 (224)
...
T Consensus 273 ~~~ 275 (343)
T 1v5w_A 273 MTA 275 (343)
T ss_dssp C--
T ss_pred cee
Confidence 864
No 149
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.63 E-value=8.2e-09 Score=93.83 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=33.1
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 44 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~ 44 (224)
.+++ ++++|+||||||||||+++|+|+++|+ .|.+.+.
T Consensus 26 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~I~~~ 63 (483)
T 3euj_A 26 DFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD-LTLLNFR 63 (483)
T ss_dssp ECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC-TTTCCCC
T ss_pred EEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC-CCEEEEC
Confidence 5788 999999999999999999999999987 5665543
No 150
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.63 E-value=2.6e-08 Score=95.52 Aligned_cols=127 Identities=14% Similarity=0.113 Sum_probs=74.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccC--CCeEEEEcCCCcccC---------CCCcccchhh----------
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--QKRVVIVDTSNEIGG---------DGDIPHSAIG---------- 62 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~--~~~i~~~~~~~~~~~---------~~~~~~~~~~---------- 62 (224)
..+..|+.++++|||||||||++.++........ +..+.++.....+.. .........+
T Consensus 104 ~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~ 183 (773)
T 2xau_A 104 KLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTS 183 (773)
T ss_dssp HHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECC
T ss_pred HHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccC
Confidence 4567889999999999999999988866543321 234554422111100 0000000000
Q ss_pred HHhHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCC-hHhHHH----HHHHHH---cCCEEEEE-EeCcchHHhhcc
Q 027390 63 TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT-EAEAHA----CRSIAE---RGVMLIGT-AHGEWLENIIKN 130 (224)
Q Consensus 63 ~~~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~-~lD~~~----~~~~~~---~g~tvi~~-tH~~~~~~~~~d 130 (224)
....+.+.++|+.++..++..++.++++||+||+.. ++|... ++.+.. ...++++| ||+.+....+.+
T Consensus 184 ~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 184 NKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp TTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred CCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 000111224788899888888899999999999985 888443 333332 23466664 888654444443
No 151
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.62 E-value=1.7e-08 Score=86.59 Aligned_cols=38 Identities=32% Similarity=0.446 Sum_probs=33.8
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCC--ccCCCeEEEEc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLS--DEFQKRVVIVD 45 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~--~~~~~~i~~~~ 45 (224)
.+|++++|+||||||||||+++|+|++. |+ +|.+.+++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~-~G~i~vi~ 117 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE-HRRVELIT 117 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT-CCCEEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC-CCeEEEEe
Confidence 7899999999999999999999999987 76 67777754
No 152
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.62 E-value=1.1e-08 Score=82.21 Aligned_cols=29 Identities=21% Similarity=0.471 Sum_probs=23.9
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
+++|++++|+||||||||||+++|+|+++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36899999999999999999999999874
No 153
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.61 E-value=1.5e-08 Score=88.07 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=37.1
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 46 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~ 46 (224)
-.+.+|++++|+||||||||||+++|+|++.++ ++++.+...
T Consensus 50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~-~g~v~i~~~ 91 (337)
T 2qm8_A 50 PQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA-GHKVAVLAV 91 (337)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEEE
T ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC-CCEEEEEEE
Confidence 357899999999999999999999999999887 688887653
No 154
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.61 E-value=3.5e-07 Score=77.16 Aligned_cols=73 Identities=22% Similarity=0.374 Sum_probs=50.2
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhcC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 87 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~~ 87 (224)
++..++|.||||+||||+++++++.+. .....+....... . ...+.+...+..+..+...+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~----~~~~~i~~~~l~~---~------------~~~~~~~~~~~~~~~~~~~~ 113 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS----ATFLNISAASLTS---K------------YVGDGEKLVRALFAVARHMQ 113 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT----CEEEEEESTTTSS---S------------SCSCHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC----CCeEEeeHHHHhh---c------------ccchHHHHHHHHHHHHHHcC
Confidence 567899999999999999999998763 2333332211110 0 01123555666777788889
Q ss_pred CCEEEEeCCCCh
Q 027390 88 PEVIIVDEIGTE 99 (224)
Q Consensus 88 p~llilDEp~~~ 99 (224)
|.+|++||+...
T Consensus 114 ~~vl~iDEid~l 125 (297)
T 3b9p_A 114 PSIIFIDEVDSL 125 (297)
T ss_dssp SEEEEEETGGGT
T ss_pred CcEEEeccHHHh
Confidence 999999999654
No 155
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.60 E-value=3.6e-07 Score=78.78 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=66.2
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCC-cc----CCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC---------
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLS-DE----FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP--------- 70 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~-~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 70 (224)
-+++|+++.|.||+|+|||||+..++.... +. .++.+.|++....+. +......++++++.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~-----~~~l~~~~~~~g~~~~~~~~~l~ 177 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFR-----WERIENMAKALGLDIDNVMNNIY 177 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-----HHHHHHHHHHTTCCHHHHHHTEE
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCC-----HHHHHHHHHHhCCCHHHHhccEE
Confidence 578999999999999999999999887542 21 035777775432210 11111111222211
Q ss_pred -----Ccc-HHHHHHHHHHHh---cCCCEEEEeCCCChHhH----------------HHH---HHH-HHcCCEEEEEEeC
Q 027390 71 -----EPS-LQHKVMIEAVEN---HMPEVIIVDEIGTEAEA----------------HAC---RSI-AERGVMLIGTAHG 121 (224)
Q Consensus 71 -----~~g-~~qr~~la~al~---~~p~llilDEp~~~lD~----------------~~~---~~~-~~~g~tvi~~tH~ 121 (224)
+.. +.+.+..+..++ .+|+++|+|+.++-... +.+ ..+ ++.+++||+++|.
T Consensus 178 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 178 YIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp EEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 111 112333444444 67999999999875321 111 222 3568999999997
Q ss_pred cc
Q 027390 122 EW 123 (224)
Q Consensus 122 ~~ 123 (224)
..
T Consensus 258 ~~ 259 (324)
T 2z43_A 258 MA 259 (324)
T ss_dssp --
T ss_pred ee
Confidence 54
No 156
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.60 E-value=1.6e-08 Score=80.16 Aligned_cols=28 Identities=25% Similarity=0.567 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcCCcc
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVLSDE 36 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l~~~ 36 (224)
|++++|+||||||||||+++|+|++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 5789999999999999999999999754
No 157
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.58 E-value=3.1e-07 Score=79.94 Aligned_cols=109 Identities=11% Similarity=0.067 Sum_probs=74.3
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHH---------h--HcCCCCcc
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTA---------R--RMQVPEPS 73 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~--~~~~~~~g 73 (224)
-+.+|+.+.|.|+||+|||||+..++...... +..+.|+.-... ..+...+. . +-+..+.+
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-g~~Vl~fSlEms-------~~ql~~Rlls~~~~v~~~~l~~g~Ls~~ 113 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALND-DRGVAVFSLEMS-------AEQLALRALSDLTSINMHDLESGRLDDD 113 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCEEEEEESSSC-------HHHHHHHHHHHHHCCCHHHHHHTCCCHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCCC-------HHHHHHHHHHHhhCCCHHHHhcCCCCHH
Confidence 37899999999999999999999998776543 567777642110 01110000 0 11334677
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCChHh--HHHHHHHHH-c-CCEEEEEEeC
Q 027390 74 LQHKVMIEAVENHMPEVIIVDEIGTEAE--AHACRSIAE-R-GVMLIGTAHG 121 (224)
Q Consensus 74 ~~qr~~la~al~~~p~llilDEp~~~lD--~~~~~~~~~-~-g~tvi~~tH~ 121 (224)
+.+++..|...+.++++.|.|+|...++ ...++.++. . +..+|++-|-
T Consensus 114 e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyL 165 (338)
T 4a1f_A 114 QWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYL 165 (338)
T ss_dssp HHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEech
Confidence 8899999988888999999999976655 233455553 3 6788887654
No 158
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.58 E-value=4.8e-08 Score=87.68 Aligned_cols=94 Identities=21% Similarity=0.229 Sum_probs=57.3
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC-----C---ccHHHHHH
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP-----E---PSLQHKVM 79 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~g~~qr~~ 79 (224)
++.+++++|||||||||++..|+..+.+. ++++.+++.+.... ....+.....+..+++ + .-...+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G~kVllv~~D~~r~---~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~a 171 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR-GYKVGLVAADVYRP---AAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKG 171 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCSCH---HHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecCccch---hHHHHHHHHHHhcCCceeeccccCCHHHHHHHH
Confidence 47899999999999999999999999876 78888775432110 0001111111222221 1 11112234
Q ss_pred HHHHHhcCCCEEEEeCCCC-h--HhHHHH
Q 027390 80 IEAVENHMPEVIIVDEIGT-E--AEAHAC 105 (224)
Q Consensus 80 la~al~~~p~llilDEp~~-~--lD~~~~ 105 (224)
++.+...+++++|+|+|.. . .|...+
T Consensus 172 l~~a~~~~~DvvIIDTaGr~~~~~d~~lm 200 (433)
T 3kl4_A 172 VDIFVKNKMDIIIVDTAGRHGYGEETKLL 200 (433)
T ss_dssp HHHTTTTTCSEEEEEECCCSSSCCTTHHH
T ss_pred HHHHHhcCCCEEEEECCCCccccCCHHHH
Confidence 5555556899999999974 3 454433
No 159
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.56 E-value=3.6e-08 Score=78.56 Aligned_cols=32 Identities=34% Similarity=0.334 Sum_probs=27.9
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDE 36 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~ 36 (224)
.+++|++++|+|||||||||+++.|++.+.|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 36889999999999999999999999998554
No 160
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.55 E-value=1.2e-07 Score=77.87 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=60.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC--CCcccCCCCcccchhhHHhHcCCCC-----ccHH
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--SNEIGGDGDIPHSAIGTARRMQVPE-----PSLQ 75 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~ 75 (224)
+..-.+|.++.+.|++|+||||++..++..+... +.++.++.. +.. + ...+. .++++.. ....
T Consensus 6 ~~~~~~G~i~litG~mGsGKTT~ll~~~~r~~~~-g~kVli~~~~~d~r-~-~~~i~-------srlG~~~~~~~~~~~~ 75 (223)
T 2b8t_A 6 AFSKKIGWIEFITGPMFAGKTAELIRRLHRLEYA-DVKYLVFKPKIDTR-S-IRNIQ-------SRTGTSLPSVEVESAP 75 (223)
T ss_dssp -----CCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCCGG-G-CSSCC-------CCCCCSSCCEEESSTH
T ss_pred hhccCCcEEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEEeccCch-H-HHHHH-------HhcCCCccccccCCHH
Confidence 3344679999999999999999887776655443 456666521 111 1 00110 1111110 0011
Q ss_pred HHHHHHHHHh----cCCCEEEEeCCCChHh---HHHHHHHHHcCCEEEEEEeCcc
Q 027390 76 HKVMIEAVEN----HMPEVIIVDEIGTEAE---AHACRSIAERGVMLIGTAHGEW 123 (224)
Q Consensus 76 qr~~la~al~----~~p~llilDEp~~~lD---~~~~~~~~~~g~tvi~~tH~~~ 123 (224)
. .+..+.. .+|+++++||... ++ .+.+..+.+.+..||++.|+.+
T Consensus 76 ~--i~~~i~~~~~~~~~dvViIDEaQ~-l~~~~ve~l~~L~~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 76 E--ILNYIMSNSFNDETKVIGIDEVQF-FDDRICEVANILAENGFVVIISGLDKN 127 (223)
T ss_dssp H--HHHHHHSTTSCTTCCEEEECSGGG-SCTHHHHHHHHHHHTTCEEEEECCSBC
T ss_pred H--HHHHHHHHhhCCCCCEEEEecCcc-CcHHHHHHHHHHHhCCCeEEEEecccc
Confidence 1 1222221 3599999999964 32 3456667777999999999543
No 161
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.51 E-value=2e-07 Score=78.65 Aligned_cols=29 Identities=31% Similarity=0.528 Sum_probs=25.5
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
.+++| ++|+||||||||||+|+|++.+.+
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHcCC
Confidence 45566 999999999999999999998865
No 162
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.50 E-value=7.9e-07 Score=77.87 Aligned_cols=109 Identities=21% Similarity=0.302 Sum_probs=65.0
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC--------CccHHH
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP--------EPSLQH 76 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~q 76 (224)
-+++|+++.|.|+||+|||||+..++...... ++.+.|++...... + . .+.++++. .....+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid~E~s~~-----~--~--~a~~~g~~~~~l~i~~~~~~e~ 128 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALD-----P--I--YARKLGVDIDNLLCSQPDTGEQ 128 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCC-----H--H--HHHHTTCCGGGCEEECCSSHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCCcc-----H--H--HHHHcCCChhheeeeCCCCHHH
Confidence 37899999999999999999999888766544 56788876532211 0 0 01122211 011122
Q ss_pred HHHHHHHH--hcCCCEEEEeCCCChH----------h----------HHHHHHH----HHcCCEEEEEEeCcc
Q 027390 77 KVMIEAVE--NHMPEVIIVDEIGTEA----------E----------AHACRSI----AERGVMLIGTAHGEW 123 (224)
Q Consensus 77 r~~la~al--~~~p~llilDEp~~~l----------D----------~~~~~~~----~~~g~tvi~~tH~~~ 123 (224)
-..+++.+ ..+++++|+|+++.-. | .+.+..+ ++.+++||+++|...
T Consensus 129 ~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~ 201 (356)
T 1u94_A 129 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 201 (356)
T ss_dssp HHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---
T ss_pred HHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 33344434 3689999999996532 1 0112222 467899999999743
No 163
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.50 E-value=6.2e-08 Score=76.38 Aligned_cols=29 Identities=24% Similarity=0.539 Sum_probs=26.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
.+|++++|+||||||||||++.|++..++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 36899999999999999999999998864
No 164
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.49 E-value=6.9e-08 Score=83.55 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=61.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccC--CCeEEEEcCCCcccCCCCcccchh-hHHhHcCCC--Ccc--HHH-HHH
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDEF--QKRVVIVDTSNEIGGDGDIPHSAI-GTARRMQVP--EPS--LQH-KVM 79 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~g--~~q-r~~ 79 (224)
.+..++|.||+|+|||||++.+++.+.+.. +..+.+++..... .+.... .....++.. ..+ ... .-.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 118 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID-----TPYRVLADLLESLDVKVPFTGLSIAELYRR 118 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC-----SHHHHHHHHTTTTSCCCCSSSCCHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC-----CHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 467899999999999999999999875532 1234444311100 000000 001111110 111 111 112
Q ss_pred HHHHHh--cCCCEEEEeCCCChHh---HHH---HHHHH----HcCCEEEEEEeCcchHHhhccce
Q 027390 80 IEAVEN--HMPEVIIVDEIGTEAE---AHA---CRSIA----ERGVMLIGTAHGEWLENIIKNPI 132 (224)
Q Consensus 80 la~al~--~~p~llilDEp~~~lD---~~~---~~~~~----~~g~tvi~~tH~~~~~~~~~d~v 132 (224)
+...+. ..|.+|++||+....+ ... +..+. ..+.++|+++|.......+..++
T Consensus 119 l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~ 183 (386)
T 2qby_A 119 LVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRV 183 (386)
T ss_dssp HHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHH
T ss_pred HHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHH
Confidence 222222 2388999999977553 122 22222 23568899999876544444433
No 165
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.48 E-value=8.4e-08 Score=89.49 Aligned_cols=39 Identities=23% Similarity=0.509 Sum_probs=32.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV 42 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~ 42 (224)
..+.+|+.++|+||||+|||||+++|++++.+...+.+.
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~ 93 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDIL 93 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEE
T ss_pred ccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEE
Confidence 457889999999999999999999999999876323333
No 166
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=98.47 E-value=1.4e-06 Score=75.11 Aligned_cols=108 Identities=17% Similarity=0.182 Sum_probs=65.4
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHH-hcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC---------CccHH
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIA-RVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP---------EPSLQ 75 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~-g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~~ 75 (224)
+++| ++.|.||+|+|||||+-.++ .......++.+.|++....+. + .+++++++. ...++
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~-----~----~ra~~lGvd~d~llv~~~~~~E~ 95 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGIT-----P----AYLRSMGVDPERVIHTPVQSLEQ 95 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCC-----H----HHHHHTTCCGGGEEEEECSBHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhh-----H----HHHHHhCCCHHHeEEEcCCCHHH
Confidence 6789 99999999999999955544 333321257888886543321 0 123344442 23444
Q ss_pred HHHHHHHHH----hcCCCEEEEeCCCChH------------------hHH----HHHH----HHHcCCEEEEEEeCcc
Q 027390 76 HKVMIEAVE----NHMPEVIIVDEIGTEA------------------EAH----ACRS----IAERGVMLIGTAHGEW 123 (224)
Q Consensus 76 qr~~la~al----~~~p~llilDEp~~~l------------------D~~----~~~~----~~~~g~tvi~~tH~~~ 123 (224)
+.+.++..+ ..+|+++++|..++-. ... .++. +++.++++|++.|...
T Consensus 96 ~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 96 LRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence 435555554 2479999999996532 111 1222 3567999999999976
No 167
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.47 E-value=4.7e-07 Score=77.82 Aligned_cols=114 Identities=17% Similarity=0.093 Sum_probs=70.0
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHc-------CC--CCccHH
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRM-------QV--PEPSLQ 75 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~g~~ 75 (224)
-+++|+++.|.|+||+|||||+..++...... +..+.|+....... .+..........+ +. .+.+++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g~~vl~~slE~s~~---~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~ 139 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKK---ENIKRLIVTAGSINAQKIKAARRDFASEDW 139 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT-TCEEEEEESSSCHH---HHHHHHHHHHTTCCHHHHHSCHHHHCSSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEECCCCHH---HHHHHHHHHHcCCCHHHHhcCCCCCCHHHH
Confidence 37899999999999999999999888654333 35666664211100 0000000000000 11 245677
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCChHh--HHHHHHHHH-cCCE--EEEEEeCc
Q 027390 76 HKVMIEAVENHMPEVIIVDEIGTEAE--AHACRSIAE-RGVM--LIGTAHGE 122 (224)
Q Consensus 76 qr~~la~al~~~p~llilDEp~~~lD--~~~~~~~~~-~g~t--vi~~tH~~ 122 (224)
+++..|...+.++++++.|+|...++ ...++.+++ .+.. +|++-|-.
T Consensus 140 ~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~ 191 (315)
T 3bh0_A 140 GKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQ 191 (315)
T ss_dssp HHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGG
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCch
Confidence 88888888888889999999976655 223455544 3666 88776553
No 168
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.45 E-value=8.2e-08 Score=82.09 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=28.8
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 43 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~ 43 (224)
+.+|++++|+||||||||||+|+|+|+..|+ .|.+.+
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~-~G~i~~ 202 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLR-VSEVSE 202 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccccc-ccceec
Confidence 3479999999999999999999999999987 566654
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.44 E-value=8.4e-08 Score=76.75 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=24.9
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
++|++++|+||||||||||+++|++.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 579999999999999999999999977
No 170
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.43 E-value=7.8e-08 Score=86.48 Aligned_cols=99 Identities=14% Similarity=0.278 Sum_probs=58.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcCCccC-CCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhcC
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVLSDEF-QKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 87 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~~ 87 (224)
+..++|.||+|+|||||+++|++.+.... +..+.++.... + ...... .+. ... . -.+...+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~-~------~~~~~~---~~~--~~~-~--~~~~~~~~~~ 194 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK-F------LNDLVD---SMK--EGK-L--NEFREKYRKK 194 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH-H------HHHHHH---HHH--TTC-H--HHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH-H------HHHHHH---HHH--ccc-H--HHHHHHhcCC
Confidence 45799999999999999999999874321 23444443111 0 001111 010 001 1 1223333348
Q ss_pred CCEEEEeCCCChHh--------HHHHHHHHHcCCEEEEEEeCc
Q 027390 88 PEVIIVDEIGTEAE--------AHACRSIAERGVMLIGTAHGE 122 (224)
Q Consensus 88 p~llilDEp~~~lD--------~~~~~~~~~~g~tvi~~tH~~ 122 (224)
|++|++||+....+ ...+..+.+.+..+|++||..
T Consensus 195 ~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 195 VDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp CSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 99999999965432 123344567788999999983
No 171
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.42 E-value=1.4e-07 Score=76.16 Aligned_cols=30 Identities=30% Similarity=0.383 Sum_probs=27.7
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
-++|++++|+||||||||||++.|++.+++
T Consensus 5 ~~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 5 TERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred cCCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 368999999999999999999999999865
No 172
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.39 E-value=7.2e-07 Score=72.06 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=29.8
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~ 45 (224)
.+..+.|.||+|+|||||++.++..+... +..+.++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~ 87 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIP 87 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 57899999999999999999999887654 34555553
No 173
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.38 E-value=1.3e-07 Score=75.75 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=33.5
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~ 45 (224)
.++|++++|+|+|||||||+++.|++.+.+. ++.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~-~~~v~~~~ 57 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ-GISVCVFH 57 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCeEEEec
Confidence 5688999999999999999999999998765 56676654
No 174
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.37 E-value=8.6e-07 Score=75.47 Aligned_cols=74 Identities=22% Similarity=0.414 Sum_probs=47.5
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHh
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 85 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~ 85 (224)
+.++..++|.||||+|||||++++++.+. .....++. ..+ . ...++-. ....+-.+..+..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~----~~~i~v~~-~~l----------~--~~~~g~~--~~~~~~~f~~a~~ 106 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKG-PEL----------L--TMWFGES--EANVREIFDKARQ 106 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT----CEEEEECH-HHH----------H--HHHHTTC--TTHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC----CCEEEEEh-HHH----------H--hhhcCch--HHHHHHHHHHHHh
Confidence 56788999999999999999999999764 22233221 111 0 0111111 1223345666666
Q ss_pred cCCCEEEEeCCCC
Q 027390 86 HMPEVIIVDEIGT 98 (224)
Q Consensus 86 ~~p~llilDEp~~ 98 (224)
..|.+|++||...
T Consensus 107 ~~p~il~iDEid~ 119 (301)
T 3cf0_A 107 AAPCVLFFDELDS 119 (301)
T ss_dssp TCSEEEEECSTTH
T ss_pred cCCeEEEEEChHH
Confidence 7899999999864
No 175
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.37 E-value=1.9e-07 Score=77.11 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=26.7
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHH---hcCCcc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIA---RVLSDE 36 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~---g~l~~~ 36 (224)
.++++++|+||||||||||+++|+ |+..++
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 357899999999999999999999 988765
No 176
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.36 E-value=1.2e-07 Score=84.98 Aligned_cols=30 Identities=33% Similarity=0.512 Sum_probs=27.0
Q ss_pred cceecCcE--EEEEcCCCCcHHHHHHHHHhcC
Q 027390 4 DLLHYGKS--ILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 4 ~~i~~Ge~--~~l~G~nGsGKTTLl~~i~g~l 33 (224)
-.+++|++ ++|+||||||||||+++|+|+.
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 46899999 9999999999999999999985
No 177
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.36 E-value=2.8e-07 Score=79.63 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=37.0
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 47 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~ 47 (224)
.+++|++++++|+||+||||++..|++.+.+. ++++.+++.+
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid~D 142 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAAAD 142 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 35789999999999999999999999999876 7888887654
No 178
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.36 E-value=2.3e-07 Score=81.27 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=28.9
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCC-ccCCCeEE
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLS-DEFQKRVV 42 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~-~~~~~~i~ 42 (224)
.+|++++|+||||||||||+|+|+|... +. .|.+.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~-~G~I~ 248 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEIL-TNDVS 248 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC-CC---
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccccccc-cCCcc
Confidence 4799999999999999999999999998 76 35443
No 179
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.35 E-value=7e-08 Score=82.96 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=25.2
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 43 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~ 43 (224)
.+.+|++++|+||||||||||+|+|+|+..+. .|.+.+
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~-~G~I~~ 206 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLR-TNEISE 206 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccccc-ccceee
Confidence 35689999999999999999999999999876 455543
No 180
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.33 E-value=2.8e-06 Score=71.02 Aligned_cols=74 Identities=28% Similarity=0.426 Sum_probs=46.2
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHh
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 85 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~ 85 (224)
+.++..++|.||+|+|||||++.++..+. ..+..+....... ...+ ......+-.+..+..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~----~~~~~v~~~~~~~-------~~~~--------~~~~~~~~~~~~~~~ 108 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN----ATFIRVVGSELVK-------KFIG--------EGASLVKDIFKLAKE 108 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT----CEEEEEEGGGGCC-------CSTT--------HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC----CCEEEEehHHHHH-------hccc--------hHHHHHHHHHHHHHH
Confidence 35677899999999999999999998764 3333332111110 0000 011222334556666
Q ss_pred cCCCEEEEeCCCC
Q 027390 86 HMPEVIIVDEIGT 98 (224)
Q Consensus 86 ~~p~llilDEp~~ 98 (224)
..|.+|++||...
T Consensus 109 ~~~~vl~iDEid~ 121 (285)
T 3h4m_A 109 KAPSIIFIDEIDA 121 (285)
T ss_dssp TCSEEEEEETTHH
T ss_pred cCCeEEEEECHHH
Confidence 7899999999954
No 181
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.33 E-value=2e-07 Score=74.54 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=27.4
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.++|++++|+|||||||||+++.|++.+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999987
No 182
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.32 E-value=3e-07 Score=72.02 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=26.6
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCcc
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDE 36 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~ 36 (224)
+.+| +++|+||||||||||+++|.+++.+.
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4567 99999999999999999999988654
No 183
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.32 E-value=2.2e-08 Score=82.49 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 43 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~ 43 (224)
++++|+||||||||||+++|+|++.|+ .|.|.+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~-~G~i~~ 60 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPD-LTLLHF 60 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCC-TTTC--
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccC-CCeEEE
Confidence 678999999999999999999999987 566554
No 184
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.31 E-value=2.6e-07 Score=71.57 Aligned_cols=28 Identities=36% Similarity=0.573 Sum_probs=25.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
.|++++|+|||||||||++++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999998754
No 185
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.31 E-value=5.2e-06 Score=72.92 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=65.2
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC--------CccHHH
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP--------EPSLQH 76 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~q 76 (224)
-+++|+++.|.||+|+|||||+..++...... ++.+.|++...... +. ..+++++. .....+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~~E~s~~-------~~--~a~~~g~d~~~l~i~~~~~~e~ 139 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEHALD-------PV--YARALGVNTDELLVSQPDNGEQ 139 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCC-------HH--HHHHTTCCGGGCEEECCSSHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEECCCChh-------HH--HHHHcCCCHHHceeecCCcHHH
Confidence 47899999999999999999998887655433 56788876532211 00 01122221 011122
Q ss_pred HHHHHHHHh--cCCCEEEEeCCCChH----------------h----HHHHHHH----HHcCCEEEEEEeCcc
Q 027390 77 KVMIEAVEN--HMPEVIIVDEIGTEA----------------E----AHACRSI----AERGVMLIGTAHGEW 123 (224)
Q Consensus 77 r~~la~al~--~~p~llilDEp~~~l----------------D----~~~~~~~----~~~g~tvi~~tH~~~ 123 (224)
-+.++..+. .++++||+|.++.-. . ...++.+ ++.+++||+++|-..
T Consensus 140 ~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~ 212 (366)
T 1xp8_A 140 ALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVRE 212 (366)
T ss_dssp HHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--
T ss_pred HHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEeccc
Confidence 333444443 579999999996532 1 1123333 356899999999753
No 186
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.30 E-value=3.4e-07 Score=78.29 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=29.3
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 43 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~ 43 (224)
.+|++++|+||||||||||+|+|+ ++.+. .|.|.+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~-~G~i~~ 197 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR-TQEVSE 197 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC-CSCC--
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc-cccccc
Confidence 468999999999999999999999 88877 566654
No 187
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.30 E-value=3.3e-07 Score=75.01 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=30.7
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 46 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~ 46 (224)
..++|++++|.|+|||||||++++|++. ++.+.+...
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~ 52 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTE 52 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEec
Confidence 3478999999999999999999999997 355666543
No 188
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.29 E-value=5.5e-07 Score=74.37 Aligned_cols=28 Identities=43% Similarity=0.700 Sum_probs=24.6
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.+++| ++|+||||+|||||+++|++.+.
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 34566 99999999999999999999875
No 189
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.29 E-value=1.4e-06 Score=83.85 Aligned_cols=74 Identities=26% Similarity=0.409 Sum_probs=48.2
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHH
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 84 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al 84 (224)
.+++|+.++|+||||+|||||+++|++.+... ...++. ..+. ... ......+.+..+..+.
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~----~i~v~~-~~l~------~~~--------~g~~~~~l~~vf~~a~ 294 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLING-PEIM------SKL--------AGESESNLRKAFEEAE 294 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE----EEEEEH-HHHS------SSS--------TTHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc----EEEEEc-hHhh------hhh--------hhhHHHHHHHHHHHHH
Confidence 46889999999999999999999999987532 222221 1110 000 0001123344566666
Q ss_pred hcCCCEEEEeCCC
Q 027390 85 NHMPEVIIVDEIG 97 (224)
Q Consensus 85 ~~~p~llilDEp~ 97 (224)
...|.++++||+.
T Consensus 295 ~~~p~il~iDEid 307 (806)
T 1ypw_A 295 KNAPAIIFIDELD 307 (806)
T ss_dssp HHCSEEEEEESGG
T ss_pred hcCCcEEEeccHH
Confidence 7789999999994
No 190
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.28 E-value=3e-07 Score=71.57 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=25.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.+|++++|+|+|||||||+++.|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 578999999999999999999999875
No 191
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.28 E-value=3.2e-07 Score=84.79 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=35.3
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 46 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~ 46 (224)
.+++|++++|+|+||||||||+++|++.+.+..++.+.+++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 578999999999999999999999999998873336766654
No 192
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.27 E-value=3.4e-07 Score=76.12 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=26.9
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHH---hcCCcc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIA---RVLSDE 36 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~---g~l~~~ 36 (224)
++|++++|+|||||||||++++|+ |+..++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 678999999999999999999999 766554
No 193
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.25 E-value=1.3e-06 Score=79.85 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=23.8
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHh
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIAR 31 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g 31 (224)
-+.++..++|.|++||||||+++.|..
T Consensus 163 dL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 163 DLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EcccCceEEEECCCCCCHHHHHHHHHH
Confidence 356688999999999999999999875
No 194
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.25 E-value=9.7e-07 Score=74.05 Aligned_cols=28 Identities=43% Similarity=0.700 Sum_probs=24.6
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.+++| ++|+||||||||||+++|++.+.
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 34566 99999999999999999999885
No 195
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.25 E-value=3.9e-07 Score=78.02 Aligned_cols=96 Identities=11% Similarity=0.221 Sum_probs=55.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhcCC
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 88 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~~p 88 (224)
+..+.|.||+|+|||||++.++..+... +..+.+++... + .......... +... .+... ..++
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~~~-~------~~~~~~~~~~------~~~~--~~~~~-~~~~ 99 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSADD-F------AQAMVEHLKK------GTIN--EFRNM-YKSV 99 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHHH-H------HHHHHHHHHH------TCHH--HHHHH-HHTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEHHH-H------HHHHHHHHHc------CcHH--HHHHH-hcCC
Confidence 4679999999999999999999988654 45555543211 0 0011111110 0011 11111 2469
Q ss_pred CEEEEeCCCChHh----H----HHHHHHHHcCCEEEEEEeC
Q 027390 89 EVIIVDEIGTEAE----A----HACRSIAERGVMLIGTAHG 121 (224)
Q Consensus 89 ~llilDEp~~~lD----~----~~~~~~~~~g~tvi~~tH~ 121 (224)
++|++||+..-.. . ..+..+.+.+..+|++++.
T Consensus 100 ~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999999965221 1 1233445667777777764
No 196
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.22 E-value=1.2e-06 Score=69.76 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 44 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~ 44 (224)
..+.|.||+|+|||||+++++..+... +..+.++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~-~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR-NVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 689999999999999999999987654 4455544
No 197
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=98.20 E-value=8.6e-06 Score=69.77 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=25.4
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhc
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
-+++|+++.|.||+|+|||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988863
No 198
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.20 E-value=2.2e-06 Score=72.45 Aligned_cols=36 Identities=36% Similarity=0.601 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~ 45 (224)
...++|.||||+||||++++|+..+... ++.+.+++
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~-~~~~~~~~ 82 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRID 82 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSC-GGGEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCC-CcceEEee
Confidence 3589999999999999999999988654 34455543
No 199
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.20 E-value=2.5e-06 Score=70.13 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=60.1
Q ss_pred ecCcE-EEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCC-------CCccHHHHH
Q 027390 7 HYGKS-ILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-------PEPSLQHKV 78 (224)
Q Consensus 7 ~~Ge~-~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~~qr~ 78 (224)
..|+. +.+.|++|+||||++-.++..+... +.++.+.+.+..-. .. .......+.. ..+......
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~v~d~D~q~~----~~--~~al~~gl~~~~~~~~~~~~~~~~e~ 75 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVMAGVVETHGR----AE--TEALLNGLPQQPLLRTEYRGMTLEEM 75 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCTTC----HH--HHHHHTTSCBCCCEEEEETTEEEEEC
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHC-CCCEEEEEeCCCCC----hh--HHHHhcCccccCcceeecCCcccccc
Confidence 34554 7889999999999977777666544 55666554432100 00 0000000000 001000001
Q ss_pred HHHHHHhcCCCEEEEeCCCCh-H-------hHHHHHHHHHcCCEEEEEEeC
Q 027390 79 MIEAVENHMPEVIIVDEIGTE-A-------EAHACRSIAERGVMLIGTAHG 121 (224)
Q Consensus 79 ~la~al~~~p~llilDEp~~~-l-------D~~~~~~~~~~g~tvi~~tH~ 121 (224)
.+..++..+|+++|+||+... . -...+..+.+.|..++.|+|-
T Consensus 76 ~l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nl 126 (228)
T 2r8r_A 76 DLDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNV 126 (228)
T ss_dssp CHHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEG
T ss_pred cHHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccc
Confidence 233334468999999999642 1 134455677888899999984
No 200
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.19 E-value=4.8e-06 Score=66.05 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=54.1
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC-CcccCCCCcccchhhH-HhHcCCCCccHHHHHHHHHHHh
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-NEIGGDGDIPHSAIGT-ARRMQVPEPSLQHKVMIEAVEN 85 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~g~~qr~~la~al~ 85 (224)
+|.++.+.||+||||||++..++..+... +.++.++... ........+... .+. .....+.+... +...+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~-g~~v~~~~~~~d~r~~~~~i~s~-~g~~~~~~~~~~~~~-----~~~~~~ 74 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLG-KKKVAVFKPKIDSRYHSTMIVSH-SGNGVEAHVIERPEE-----MRKYIE 74 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT-TCEEEEEEEC-----CCCEECC-----CEECEEESSGGG-----GGGGCC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeeccccccCcccEEec-CCCceeeEEECCHHH-----HHHHhc
Confidence 58899999999999999984444333222 3455543111 000000000000 000 00000000000 000011
Q ss_pred cCCCEEEEeCCCCh-Hh-HHHHHHHHHcCCEEEEEEeCcc
Q 027390 86 HMPEVIIVDEIGTE-AE-AHACRSIAERGVMLIGTAHGEW 123 (224)
Q Consensus 86 ~~p~llilDEp~~~-lD-~~~~~~~~~~g~tvi~~tH~~~ 123 (224)
.++++|++||...- -+ .+.+..+.+.+..|+++.++.+
T Consensus 75 ~~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 75 EDTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp TTEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeeccc
Confidence 36799999998552 12 3455666677899999988655
No 201
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.19 E-value=8.9e-07 Score=70.86 Aligned_cols=31 Identities=23% Similarity=0.148 Sum_probs=28.4
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
-..+++|.+++|+|++||||||+++.|++.+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568899999999999999999999999976
No 202
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.17 E-value=6.9e-07 Score=82.36 Aligned_cols=29 Identities=38% Similarity=0.690 Sum_probs=26.9
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCcc
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDE 36 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~ 36 (224)
+|++++|+||||+|||||+++|++.+.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 68999999999999999999999998654
No 203
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.17 E-value=1e-05 Score=66.49 Aligned_cols=73 Identities=19% Similarity=0.326 Sum_probs=43.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 86 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~ 86 (224)
.....++|.||+|+||||+++.++..+. .....+....... . ..+ ......+-.+..+...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~~~~~~~~~---~----~~~--------~~~~~~~~~~~~a~~~ 97 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ----VPFLAMAGAEFVE---V----IGG--------LGAARVRSLFKEARAR 97 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT----CCEEEEETTTTSS---S----STT--------HHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEechHHHHh---h----ccC--------hhHHHHHHHHHHHHhc
Confidence 4456789999999999999999998663 2333332221110 0 000 0111223345555567
Q ss_pred CCCEEEEeCCCC
Q 027390 87 MPEVIIVDEIGT 98 (224)
Q Consensus 87 ~p~llilDEp~~ 98 (224)
.|.+|++||...
T Consensus 98 ~~~vl~iDeid~ 109 (262)
T 2qz4_A 98 APCIVYIDEIDA 109 (262)
T ss_dssp CSEEEEEECC--
T ss_pred CCeEEEEeCcch
Confidence 799999999965
No 204
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.15 E-value=1.1e-06 Score=75.88 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCc--cCCCeEEEEcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVLSD--EFQKRVVIVDT 46 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~--~~~~~i~~~~~ 46 (224)
+++|+||||||||||+++|++++.. + ++.+.++..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~-~~~v~~i~~ 130 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPD-HPNVEVITT 130 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTT-CCCEEEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCC-CCeEEEEee
Confidence 8999999999999999999999873 3 466666544
No 205
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.14 E-value=5.3e-06 Score=84.95 Aligned_cols=106 Identities=22% Similarity=0.311 Sum_probs=66.4
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC---------CccHHH
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP---------EPSLQH 76 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~~q 76 (224)
+++|+++.|.||||+|||||+..++...... ++.+.|+....... +.. ++++++. .... +
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~-g~~VlyiS~Ees~~-------ql~--A~~lGvd~~~L~i~~~~~le-e 797 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALD-------PIY--ARKLGVDIDNLLCSQPDTGE-Q 797 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCC-------HHH--HHHTTCCGGGCEEECCSSHH-H
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHc-CCCeEEEeccchHH-------HHH--HHHcCCChhheEEecCCcHH-H
Confidence 7899999999999999999999998877654 56787775432211 011 2223221 1122 2
Q ss_pred HHHHHHHH--hcCCCEEEEeCCCChH----------------hHH----HHHH----HHHcCCEEEEEEeCc
Q 027390 77 KVMIEAVE--NHMPEVIIVDEIGTEA----------------EAH----ACRS----IAERGVMLIGTAHGE 122 (224)
Q Consensus 77 r~~la~al--~~~p~llilDEp~~~l----------------D~~----~~~~----~~~~g~tvi~~tH~~ 122 (224)
-...++.+ ..+|+++|+|+.+.-. ... .+.. +++.+++||+++|-.
T Consensus 798 i~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~ 869 (1706)
T 3cmw_A 798 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 869 (1706)
T ss_dssp HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEE
T ss_pred HHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 22223222 3689999999997632 111 1233 246799999999954
No 206
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.14 E-value=1.2e-06 Score=70.52 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=25.9
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.+|++++|+||||||||||++.|++..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4789999999999999999999999875
No 207
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.14 E-value=7.3e-06 Score=67.65 Aligned_cols=68 Identities=29% Similarity=0.415 Sum_probs=41.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhcCCC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 89 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~~p~ 89 (224)
.-++|.||||+|||||++++++.+.. ....++.. .+. ... ......+.+-.+..+....|.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~----~~~~i~~~-~~~------~~~--------~~~~~~~~~~~~~~a~~~~~~ 106 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKV----PFFTISGS-DFV------EMF--------VGVGASRVRDMFEQAKKAAPC 106 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC----CEEEECSC-SST------TSC--------CCCCHHHHHHHHHHHHTTCSE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCC----CEEEEeHH-HHH------HHh--------hhhhHHHHHHHHHHHHHcCCe
Confidence 45899999999999999999997642 23333321 111 000 001112223344555556788
Q ss_pred EEEEeCC
Q 027390 90 VIIVDEI 96 (224)
Q Consensus 90 llilDEp 96 (224)
++++||.
T Consensus 107 il~iDei 113 (257)
T 1lv7_A 107 IIFIDEI 113 (257)
T ss_dssp EEEETTH
T ss_pred eehhhhh
Confidence 9999998
No 208
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.12 E-value=1.1e-06 Score=70.03 Aligned_cols=31 Identities=32% Similarity=0.320 Sum_probs=25.4
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
-.+++|++++|+|++||||||+.+.|+..+.
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3578899999999999999999999998774
No 209
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.11 E-value=8.5e-07 Score=69.81 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=25.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCCcc
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLSDE 36 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~~~ 36 (224)
++++|+|+||||||||++.|++++.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 589999999999999999999999875
No 210
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.10 E-value=5.5e-06 Score=70.71 Aligned_cols=87 Identities=24% Similarity=0.247 Sum_probs=53.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC--------CccHHHHHHH
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP--------EPSLQHKVMI 80 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~qr~~l 80 (224)
|++++++|+||+||||++..|++.+.+. ++++.+++.+..... ...+.....++.++. ++....+-.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~~D~~r~~---a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l 173 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVGADVYRPA---ALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGV 173 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEECCCSSSH---HHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCHH---HHHHHHHHhccCCeEEEecCCCCCHHHHHHHHH
Confidence 8899999999999999999999999876 788888765432110 000110111222221 1111112234
Q ss_pred HHHHhcCCCEEEEeCCCCh
Q 027390 81 EAVENHMPEVIIVDEIGTE 99 (224)
Q Consensus 81 a~al~~~p~llilDEp~~~ 99 (224)
..+...+.|++|+|=|...
T Consensus 174 ~~~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 174 EKFLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHHHHTTCSEEEEECCCSC
T ss_pred HHHHhCCCCEEEEeCCCCc
Confidence 4433478899999999653
No 211
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.08 E-value=1.3e-05 Score=68.84 Aligned_cols=75 Identities=21% Similarity=0.380 Sum_probs=46.6
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHh
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 85 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~ 85 (224)
..+...++|.||+|+|||||++.++..+. +..+..+....... .. ++ ......+-.+..+..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~~---~~~~~~i~~~~l~~-------~~------~g--~~~~~~~~lf~~a~~ 103 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSISSSDLVS-------KW------LG--ESEKLVKNLFQLARE 103 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHTT---SCEEEEEECCSSCC-------SS------CC--SCHHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHcC---CCcEEEEEhHHHHh-------hh------hh--HHHHHHHHHHHHHHh
Confidence 34557899999999999999999998772 23334333221110 00 01 111223334555556
Q ss_pred cCCCEEEEeCCCC
Q 027390 86 HMPEVIIVDEIGT 98 (224)
Q Consensus 86 ~~p~llilDEp~~ 98 (224)
..|.+|++||..+
T Consensus 104 ~~~~vl~iDEid~ 116 (322)
T 1xwi_A 104 NKPSIIFIDEIDS 116 (322)
T ss_dssp TSSEEEEEETTTG
T ss_pred cCCcEEEeecHHH
Confidence 7899999999965
No 212
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.08 E-value=2e-06 Score=74.98 Aligned_cols=38 Identities=18% Similarity=0.465 Sum_probs=32.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 46 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~ 46 (224)
++.+++|+|+||||||||++.|++.+.+. ++++.++..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~-~~~v~V~~~ 110 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTER-GHKLSVLAV 110 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhc-CCeEEEEee
Confidence 47899999999999999999999998776 677776643
No 213
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.06 E-value=1.6e-05 Score=71.52 Aligned_cols=87 Identities=23% Similarity=0.260 Sum_probs=53.3
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC-----C---ccHHHHHH
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP-----E---PSLQHKVM 79 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~g~~qr~~ 79 (224)
++.+++++|+|||||||++..|+..+... +.++.++..+.... ....+.....+..+++ . ....-+-+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~-G~kVllv~~D~~R~---aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~a 174 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR-GYKVGVVCSDTWRP---GAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEG 174 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCCSST---HHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCcch---hHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHH
Confidence 36799999999999999999999988765 67787776432211 0001111111222221 1 11112234
Q ss_pred HHHHHhcCCCEEEEeCCCC
Q 027390 80 IEAVENHMPEVIIVDEIGT 98 (224)
Q Consensus 80 la~al~~~p~llilDEp~~ 98 (224)
+..+...++|++|+|.|..
T Consensus 175 l~~a~~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 175 VDYFKSKGVDIIIVDTAGR 193 (443)
T ss_dssp HHHHHHTTCSEEEEECCCC
T ss_pred HHHHHhCCCCEEEEECCCc
Confidence 5566667799999999964
No 214
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.06 E-value=9.2e-06 Score=70.75 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=23.1
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
..-.++++|+||+|||||++.+++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999999865
No 215
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.06 E-value=2.3e-06 Score=67.23 Aligned_cols=40 Identities=35% Similarity=0.586 Sum_probs=33.3
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~ 45 (224)
...+|.++.|.|++||||||+++.|+..+... ++.+.+++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~-~~~~~~~~ 48 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKE-GYRVEVLD 48 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEee
Confidence 45689999999999999999999999998765 55665553
No 216
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.05 E-value=2.3e-06 Score=66.86 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=26.2
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
.+|++++|+|++||||||+++.|++.+.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47899999999999999999999998865
No 217
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.05 E-value=2e-06 Score=76.78 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=27.3
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCcc
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDE 36 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~ 36 (224)
+.+|++++|+||||||||||+++|++++.+.
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 3468999999999999999999999998764
No 218
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.04 E-value=3e-06 Score=75.10 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=36.3
Q ss_pred CC--CEEEEeCCCChHhHHHHHH-------H-HHcCCEEEEEEeCcchHHhhccceeeeccC
Q 027390 87 MP--EVIIVDEIGTEAEAHACRS-------I-AERGVMLIGTAHGEWLENIIKNPILSDLIG 138 (224)
Q Consensus 87 ~p--~llilDEp~~~lD~~~~~~-------~-~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~ 138 (224)
+| +++++|||+..+|...+.. . ...|.|++ +|.......+|+++...|..
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~ 198 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTE 198 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHT
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhcc
Confidence 78 8999999999999765432 2 23355654 99988889999998743444
No 219
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.03 E-value=1.5e-05 Score=69.32 Aligned_cols=71 Identities=28% Similarity=0.392 Sum_probs=44.8
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 86 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~ 86 (224)
.+...++|.||+|+|||||+++++..+. ..+..+....... ...+ ......+..+..+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~----~~~~~i~~~~l~~-------~~~g--------~~~~~~~~~~~~a~~~ 175 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG----ATFFSISASSLTS-------KWVG--------EGEKMVRALFAVARCQ 175 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT----CEEEEEEGGGGCC-------SSTT--------HHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC----CeEEEEehHHhhc-------cccc--------hHHHHHHHHHHHHHhc
Confidence 4567899999999999999999998763 3334333211110 0000 1112233445556667
Q ss_pred CCCEEEEeCC
Q 027390 87 MPEVIIVDEI 96 (224)
Q Consensus 87 ~p~llilDEp 96 (224)
.|.+|++||.
T Consensus 176 ~~~vl~iDEi 185 (357)
T 3d8b_A 176 QPAVIFIDEI 185 (357)
T ss_dssp CSEEEEEETH
T ss_pred CCeEEEEeCc
Confidence 8999999999
No 220
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=9.2e-06 Score=72.91 Aligned_cols=74 Identities=24% Similarity=0.430 Sum_probs=48.2
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHh
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 85 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~ 85 (224)
+++-.-++|.||||+|||+|.+++|+.+.. .+..+...... .... ......-|..+..|..
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~----~~~~v~~s~l~-------sk~~--------Gese~~ir~~F~~A~~ 272 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGA----NFIFSPASGIV-------DKYI--------GESARIIREMFAYAKE 272 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC----EEEEEEGGGTC-------CSSS--------SHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCC----CEEEEehhhhc-------cccc--------hHHHHHHHHHHHHHHh
Confidence 344556999999999999999999997743 33433221111 0000 0112234556777778
Q ss_pred cCCCEEEEeCCCC
Q 027390 86 HMPEVIIVDEIGT 98 (224)
Q Consensus 86 ~~p~llilDEp~~ 98 (224)
..|.+|++||..+
T Consensus 273 ~~P~IifiDEiDa 285 (437)
T 4b4t_L 273 HEPCIIFMDEVDA 285 (437)
T ss_dssp SCSEEEEEECCCS
T ss_pred cCCceeeeecccc
Confidence 9999999999954
No 221
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.02 E-value=1.8e-05 Score=74.65 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=65.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc-CCCeEEEEcCCCcccC-------CCCcccch---hhHHhHcCC-CC
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGG-------DGDIPHSA---IGTARRMQV-PE 71 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~-~~~~i~~~~~~~~~~~-------~~~~~~~~---~~~~~~~~~-~~ 71 (224)
..++++..++|+|++|+|||||++.|++...+. ..+.+ .+......+ ...+..+. ......+.+ ..
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V--~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV--EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG--GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee--cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 457789999999999999999999999766431 12332 111000000 00000000 000000111 11
Q ss_pred ccH--HHHHHHHHHHhcCCCEEEEeCCCChHhHHH---HHHHHHcCCEEEEEEeCcchH
Q 027390 72 PSL--QHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CRSIAERGVMLIGTAHGEWLE 125 (224)
Q Consensus 72 ~g~--~qr~~la~al~~~p~llilDEp~~~lD~~~---~~~~~~~g~tvi~~tH~~~~~ 125 (224)
+|+ ........+...++-++++| ++.+++... ++.+.+.+..+|++.|.++..
T Consensus 82 pG~~~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 82 PGYGDFVGEIRGALEAADAALVAVS-AEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred CCccchHHHHHHHHhhcCcEEEEEc-CCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 232 12334444556788999999 888887543 344556688888888887643
No 222
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=8.1e-06 Score=72.50 Aligned_cols=73 Identities=29% Similarity=0.469 Sum_probs=46.7
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 86 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~ 86 (224)
++..-++|.||||+|||+|.+++|+.... .+..+... .+. ....+ .+...-|-.+..|...
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~----~f~~v~~s-~l~------sk~vG--------ese~~vr~lF~~Ar~~ 240 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDC----KFIRVSGA-ELV------QKYIG--------EGSRMVRELFVMAREH 240 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTC----EEEEEEGG-GGS------CSSTT--------HHHHHHHHHHHHHHHT
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCC----CceEEEhH-Hhh------ccccc--------hHHHHHHHHHHHHHHh
Confidence 33345999999999999999999997643 33333221 110 00111 1122334567777778
Q ss_pred CCCEEEEeCCCC
Q 027390 87 MPEVIIVDEIGT 98 (224)
Q Consensus 87 ~p~llilDEp~~ 98 (224)
.|.+|++||..+
T Consensus 241 aP~IIFiDEiDa 252 (405)
T 4b4t_J 241 APSIIFMDEIDS 252 (405)
T ss_dssp CSEEEEEESSSC
T ss_pred CCceEeeecchh
Confidence 999999999954
No 223
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.99 E-value=2.9e-06 Score=68.46 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=23.8
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.+.+++|+|||||||||+++.|++.+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999876
No 224
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.99 E-value=1e-06 Score=76.17 Aligned_cols=25 Identities=44% Similarity=0.713 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
+.++|+||||+|||||+++|++.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 7899999999999999999999873
No 225
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.99 E-value=3e-06 Score=73.50 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=34.9
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 46 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~ 46 (224)
.+.+|.+++|+|+||||||||++.|++.+.+. ++++.+++.
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~-~~~v~v~~~ 92 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE-GLKVAVIAV 92 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEE
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEEee
Confidence 46789999999999999999999999998776 677776643
No 226
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.98 E-value=2.7e-06 Score=75.01 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=27.1
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.+++|++++|+||||||||||+++|++..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 58899999999999999999999999964
No 227
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.98 E-value=5.1e-06 Score=71.77 Aligned_cols=28 Identities=36% Similarity=0.468 Sum_probs=24.7
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
..+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998774
No 228
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.98 E-value=1.1e-05 Score=72.48 Aligned_cols=73 Identities=21% Similarity=0.328 Sum_probs=47.2
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHh
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 85 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~ 85 (224)
+++..-++|.||||+|||+|.+++|+.+.. .+..+.. ..+. ... +..+...-|..+..|-.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~----~f~~v~~-s~l~------~~~--------vGese~~ir~lF~~A~~ 272 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNA----TFLKLAA-PQLV------QMY--------IGEGAKLVRDAFALAKE 272 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC----EEEEEEG-GGGC------SSC--------SSHHHHHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCC----CEEEEeh-hhhh------hcc--------cchHHHHHHHHHHHHHh
Confidence 344556999999999999999999997743 3333321 1111 000 11112334556677777
Q ss_pred cCCCEEEEeCCC
Q 027390 86 HMPEVIIVDEIG 97 (224)
Q Consensus 86 ~~p~llilDEp~ 97 (224)
..|.+|++||..
T Consensus 273 ~aP~IifiDEiD 284 (434)
T 4b4t_M 273 KAPTIIFIDELD 284 (434)
T ss_dssp HCSEEEEEECTH
T ss_pred cCCeEEeecchh
Confidence 899999999984
No 229
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.98 E-value=1.9e-05 Score=63.09 Aligned_cols=110 Identities=18% Similarity=0.192 Sum_probs=59.2
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-C-CCcccCCCCcccchhhH-HhHcCCCCccHHHHHHHHH
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-T-SNEIGGDGDIPHSAIGT-ARRMQVPEPSLQHKVMIEA 82 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-~-~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~qr~~la~ 82 (224)
-.+|.+..+.||.||||||.+--++...... +.++.++. . +...+ ...+... .+. .....+.+.. .+-.
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~-g~kV~v~k~~~d~r~~-~~~i~s~-~g~~~~a~~~~~~~-----~i~~ 76 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRAKIA-KQKIQVFKPEIDNRYS-KEDVVSH-MGEKEQAVAIKNSR-----EILK 76 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC--------CEEECT-TSCEEECEEESSST-----HHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCccch-HHHHHhh-cCCceeeEeeCCHH-----HHHH
Confidence 4678999999999999998887766655433 45665542 1 11100 0000000 000 0000111111 1111
Q ss_pred HHhcCCCEEEEeCCCC--hHhHHHHHHHHHcCCEEEEEEeCcc
Q 027390 83 VENHMPEVIIVDEIGT--EAEAHACRSIAERGVMLIGTAHGEW 123 (224)
Q Consensus 83 al~~~p~llilDEp~~--~lD~~~~~~~~~~g~tvi~~tH~~~ 123 (224)
.+..+.++|++||... .-..+.++.+.+.++.||++.++.+
T Consensus 77 ~~~~~~dvViIDEaqfl~~~~v~~l~~l~~~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 77 YFEEDTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMD 119 (191)
T ss_dssp HCCTTCSEEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSBC
T ss_pred HHhccCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 1123579999999744 1124556677777999999998653
No 230
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.97 E-value=3.3e-05 Score=59.13 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 11 SILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.++|+|+||+|||||++.+++...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998653
No 231
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.97 E-value=7.4e-06 Score=70.13 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcCC-ccCCCeEEEE
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVLS-DEFQKRVVIV 44 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l~-~~~~~~i~~~ 44 (224)
+..+.|.||+|+|||+|+++|+..+. .. +..+.++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~-g~~v~~~ 187 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK-GVSTTLL 187 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS-CCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEE
Confidence 68899999999999999999998776 43 4555554
No 232
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.96 E-value=4.9e-05 Score=66.77 Aligned_cols=72 Identities=17% Similarity=0.347 Sum_probs=44.3
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhcC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 87 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~~ 87 (224)
++..++|.||+|+|||||++.++.... ..+..+....... .. .+ ......+..+..+....
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~----~~~~~v~~~~l~~-------~~------~g--~~~~~~~~~~~~a~~~~ 207 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESN----ATFFNISAASLTS-------KY------VG--EGEKLVRALFAVARELQ 207 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTT----CEEEEECSCCC----------------------CHHHHHHHHHHHHHSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhc----CcEEEeeHHHhhc-------cc------cc--hHHHHHHHHHHHHHhcC
Confidence 457899999999999999999988653 4444443221110 00 00 01122233455555678
Q ss_pred CCEEEEeCCCC
Q 027390 88 PEVIIVDEIGT 98 (224)
Q Consensus 88 p~llilDEp~~ 98 (224)
|.+|++||...
T Consensus 208 ~~il~iDEid~ 218 (389)
T 3vfd_A 208 PSIIFIDQVDS 218 (389)
T ss_dssp SEEEEEETGGG
T ss_pred CeEEEEECchh
Confidence 99999999943
No 233
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.96 E-value=3.1e-05 Score=62.90 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=28.3
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhc-CCccCCCeEEEEc
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARV-LSDEFQKRVVIVD 45 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~-l~~~~~~~i~~~~ 45 (224)
+++|+++.|.|+||+|||||+..++-- .... +..+.|+.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s 66 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVT 66 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeec
Confidence 789999999999999999998765532 2222 34566553
No 234
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.95 E-value=1.4e-05 Score=68.57 Aligned_cols=73 Identities=22% Similarity=0.408 Sum_probs=44.6
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 86 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~ 86 (224)
.+...++|.||+|+|||||+++++..+. ..+..+... .+. ....+ ......+-.+..+...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~----~~~~~v~~~-~l~------~~~~g--------~~~~~~~~~f~~a~~~ 109 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEAN----STFFSVSSS-DLV------SKWMG--------ESEKLVKQLFAMAREN 109 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHT----CEEEEEEHH-HHH------TTTGG--------GHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHC----CCEEEEchH-HHh------hcccc--------hHHHHHHHHHHHHHhc
Confidence 3456799999999999999999998753 333333211 110 00000 0112223345566668
Q ss_pred CCCEEEEeCCCC
Q 027390 87 MPEVIIVDEIGT 98 (224)
Q Consensus 87 ~p~llilDEp~~ 98 (224)
.|.+|++||...
T Consensus 110 ~~~vl~iDEid~ 121 (322)
T 3eie_A 110 KPSIIFIDQVDA 121 (322)
T ss_dssp SSEEEEEECGGG
T ss_pred CCeEEEechhhh
Confidence 899999999854
No 235
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.94 E-value=3.5e-05 Score=69.15 Aligned_cols=74 Identities=20% Similarity=0.379 Sum_probs=44.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 86 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~ 86 (224)
.+...++|.||+|+|||||+++++..+. +..+..+....... . ..+-. ....+-.+..+...
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~---~~~~~~v~~~~l~~-------~------~~g~~--~~~~~~~f~~a~~~ 226 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSISSSDLVS-------K------WLGES--EKLVKNLFQLAREN 226 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCC---SSEEEEECCC----------------------C--CCTHHHHHHHHHHS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC---CCCEEEEeHHHHHh-------h------hcchH--HHHHHHHHHHHHHc
Confidence 4556899999999999999999999772 23334333221110 0 01111 11123344455567
Q ss_pred CCCEEEEeCCCC
Q 027390 87 MPEVIIVDEIGT 98 (224)
Q Consensus 87 ~p~llilDEp~~ 98 (224)
.|.+|++||..+
T Consensus 227 ~~~vl~iDEid~ 238 (444)
T 2zan_A 227 KPSIIFIDEIDS 238 (444)
T ss_dssp CSEEEEESCTTT
T ss_pred CCeEEEEechHh
Confidence 899999999964
No 236
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.94 E-value=2.6e-05 Score=62.59 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=60.4
Q ss_pred ecCcEEEEEcCCCCcHH-HHHHHHHhcCCccCCCeEEEEcCC--CcccCCCCcccchhhH-HhHcCCCCccHHHHHHHHH
Q 027390 7 HYGKSILFVGRPGVGKT-TVMREIARVLSDEFQKRVVIVDTS--NEIGGDGDIPHSAIGT-ARRMQVPEPSLQHKVMIEA 82 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKT-TLl~~i~g~l~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~g~~qr~~la~ 82 (224)
..|++..+.||.||||| .|++.+..... . +.++.++... .... . .+... .+. .+...+.+...-..
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~-~-~~kvl~~kp~~D~R~~-~-~i~S~-~g~~~~A~~~~~~~d~~~----- 87 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQI-A-QYKCLVIKYAKDTRYS-S-SFCTH-DRNTMEALPACLLRDVAQ----- 87 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH-T-TCCEEEEEETTCCCGG-G-SCCHH-HHHHSEEEEESSGGGGHH-----
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHH-c-CCeEEEEccccCccch-h-hhhhc-cCCcccceecCCHHHHHH-----
Confidence 35899999999999999 56666555443 2 4666665311 1111 0 11110 000 00001111111111
Q ss_pred HHhcCCCEEEEeCCCChHh-HHHHHHHHHcCCEEEEEEeCcchH
Q 027390 83 VENHMPEVIIVDEIGTEAE-AHACRSIAERGVMLIGTAHGEWLE 125 (224)
Q Consensus 83 al~~~p~llilDEp~~~lD-~~~~~~~~~~g~tvi~~tH~~~~~ 125 (224)
...+.++|++||..---| .+.+..+.+.|+.||++..+.++.
T Consensus 88 -~~~~~DvIlIDEaQFfk~~ve~~~~L~~~gk~VI~~GL~~DF~ 130 (195)
T 1w4r_A 88 -EALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQ 130 (195)
T ss_dssp -HHHTCSEEEESSGGGCTTHHHHHHHHHHTTCEEEEEEESBCTT
T ss_pred -hccCCCEEEEEchhhhHHHHHHHHHHHHCCCeEEEEecccccc
Confidence 135689999999944322 345677788899999999997753
No 237
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.94 E-value=4.7e-06 Score=66.47 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 027390 11 SILFVGRPGVGKTTVMREIAR 31 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g 31 (224)
+++|+|+|||||||+.+.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999998
No 238
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.93 E-value=2.3e-05 Score=68.28 Aligned_cols=73 Identities=21% Similarity=0.391 Sum_probs=44.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 86 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~ 86 (224)
.+...++|.||+|+|||||+++++..+. ..+..+... .+. . .+ ........+..+..+...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~~----~~~~~v~~~-~l~------~-------~~-~g~~~~~~~~~f~~a~~~ 142 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEAN----STFFSVSSS-DLV------S-------KW-MGESEKLVKQLFAMAREN 142 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHHT----CEEEEEEHH-HHH------S-------CC----CHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC----CCEEEeeHH-HHh------h-------hh-cchHHHHHHHHHHHHHHc
Confidence 3445689999999999999999998763 233333211 110 0 00 001122233345555567
Q ss_pred CCCEEEEeCCCC
Q 027390 87 MPEVIIVDEIGT 98 (224)
Q Consensus 87 ~p~llilDEp~~ 98 (224)
.|.+|++||...
T Consensus 143 ~~~vl~iDEid~ 154 (355)
T 2qp9_X 143 KPSIIFIDQVDA 154 (355)
T ss_dssp SSEEEEEECGGG
T ss_pred CCeEEEEechHh
Confidence 899999999964
No 239
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.92 E-value=5.8e-06 Score=65.18 Aligned_cols=25 Identities=24% Similarity=0.589 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 11 SILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
.++|+|+||||||||++.+++...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999998754
No 240
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.92 E-value=2.5e-06 Score=71.14 Aligned_cols=31 Identities=42% Similarity=0.526 Sum_probs=27.5
Q ss_pred ceec---CcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 5 LLHY---GKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 5 ~i~~---Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
.+.+ |++++|+|++||||||+++.|++.+..
T Consensus 41 ~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 41 EVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred hhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4566 999999999999999999999997753
No 241
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.92 E-value=4.2e-06 Score=73.33 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=24.0
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHh
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIAR 31 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g 31 (224)
.+.+| +++|+||||||||||+++|.+
T Consensus 23 ~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 23 NFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp ECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 46678 999999999999999999997
No 242
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.91 E-value=5.3e-06 Score=75.73 Aligned_cols=28 Identities=43% Similarity=0.700 Sum_probs=24.5
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.+++| ++|+||||+|||||+++|++...
T Consensus 62 ~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 62 RIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 34566 99999999999999999999874
No 243
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.91 E-value=2.5e-05 Score=69.92 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=34.8
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 47 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~ 47 (224)
++++++++|+|||||||++..|++.+.+. ++++.+++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeecc
Confidence 68899999999999999999999999876 7888887653
No 244
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.91 E-value=1.9e-05 Score=68.18 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=24.2
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhc
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
+++|.++.|.||||+|||||...++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 567888999999999999999999865
No 245
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.90 E-value=5.3e-06 Score=66.32 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=26.4
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.+.+|.+++|+|||||||||+.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998774
No 246
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.90 E-value=1.3e-05 Score=65.17 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=59.1
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-cccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHH
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 84 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al 84 (224)
-.+|.+..+.|+.||||||.+-.++-..... +.++.++.... .......+....-...+...+.+..+ .+. .+
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~----~~~-~~ 98 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFA-KQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKD----IFK-HI 98 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEECC-----------------CCEEECSSGGG----GGG-GC
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHH----HHH-HH
Confidence 3578999999999999999887666555433 45666552110 00000000000000000001111100 000 01
Q ss_pred hcCCCEEEEeCCCC--hHhHHHHHHHHHcCCEEEEEEeCcc
Q 027390 85 NHMPEVIIVDEIGT--EAEAHACRSIAERGVMLIGTAHGEW 123 (224)
Q Consensus 85 ~~~p~llilDEp~~--~lD~~~~~~~~~~g~tvi~~tH~~~ 123 (224)
..+.+++++||..- .-..+.+..+.+.++.||++.++.+
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQD 139 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEECSBC
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHhhCCCEEEEEecccc
Confidence 12589999999955 1224566777777999999999654
No 247
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=1.7e-05 Score=71.43 Aligned_cols=74 Identities=26% Similarity=0.345 Sum_probs=48.4
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHh
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 85 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~ 85 (224)
+++-.-++|.||||+|||+|.+++|+.+.. .+..+.. ..+. .... ..+...-|..+..|..
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~----~fi~vs~-s~L~------sk~v--------Gesek~ir~lF~~Ar~ 300 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTDA----TFIRVIG-SELV------QKYV--------GEGARMVRELFEMART 300 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHTC----EEEEEEG-GGGC------CCSS--------SHHHHHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCC----CeEEEEh-HHhh------cccC--------CHHHHHHHHHHHHHHh
Confidence 345566999999999999999999997743 3333321 1110 0011 1112334556777778
Q ss_pred cCCCEEEEeCCCC
Q 027390 86 HMPEVIIVDEIGT 98 (224)
Q Consensus 86 ~~p~llilDEp~~ 98 (224)
..|.+|++||..+
T Consensus 301 ~aP~IIfiDEiDa 313 (467)
T 4b4t_H 301 KKACIIFFDEIDA 313 (467)
T ss_dssp TCSEEEEEECCTT
T ss_pred cCCceEeeccccc
Confidence 9999999999954
No 248
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.90 E-value=6.3e-05 Score=63.35 Aligned_cols=29 Identities=38% Similarity=0.545 Sum_probs=24.6
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
.++..++|.||+|+||||+++.++..+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34557999999999999999999987743
No 249
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.89 E-value=2.1e-05 Score=70.46 Aligned_cols=72 Identities=24% Similarity=0.460 Sum_probs=46.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 86 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~ 86 (224)
++..-++|.||||+|||+|.+++|+.+. ..+..+...... ....+ .....-|-.+..|...
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~----~~~~~v~~~~l~-------~~~~G--------e~e~~ir~lF~~A~~~ 264 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTK----AAFIRVNGSEFV-------HKYLG--------EGPRMVRDVFRLAREN 264 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHT----CEEEEEEGGGTC-------CSSCS--------HHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC----CCeEEEecchhh-------ccccc--------hhHHHHHHHHHHHHHc
Confidence 3445599999999999999999999774 333433221111 00000 1112334466677778
Q ss_pred CCCEEEEeCCC
Q 027390 87 MPEVIIVDEIG 97 (224)
Q Consensus 87 ~p~llilDEp~ 97 (224)
.|.++++||..
T Consensus 265 aP~IifiDEiD 275 (428)
T 4b4t_K 265 APSIIFIDEVD 275 (428)
T ss_dssp CSEEEEEECTH
T ss_pred CCCeeechhhh
Confidence 99999999994
No 250
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.88 E-value=4.6e-06 Score=67.05 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=32.4
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~ 45 (224)
.+++|.++.|.|++||||||+.+.|++.+.+..+....+++
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 46789999999999999999999999998744232344443
No 251
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.88 E-value=3.5e-05 Score=59.32 Aligned_cols=27 Identities=30% Similarity=0.624 Sum_probs=23.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 346799999999999999999998764
No 252
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.88 E-value=8e-05 Score=76.40 Aligned_cols=106 Identities=23% Similarity=0.306 Sum_probs=65.8
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC---------CccHHH
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP---------EPSLQH 76 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~~q 76 (224)
+++|.++.|.||||+|||||+..++...... ++.+.|++....... . .++.+++. +..++
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~-G~~vlyis~E~s~~~-------~--~a~~lGvd~~~L~i~~~~~~e~- 448 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDP-------I--YARKLGVDIDNLLCSQPDTGEQ- 448 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCH-------H--HHHHTTCCGGGCEEECCSSHHH-
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchHH-------H--HHHHcCCCHHHeEEcCCCCHHH-
Confidence 7899999999999999999998887766544 577888764332210 0 01222221 11222
Q ss_pred HHHHHHHH--hcCCCEEEEeCCCChHh----------------H----HHHHHH----HHcCCEEEEEEeCc
Q 027390 77 KVMIEAVE--NHMPEVIIVDEIGTEAE----------------A----HACRSI----AERGVMLIGTAHGE 122 (224)
Q Consensus 77 r~~la~al--~~~p~llilDEp~~~lD----------------~----~~~~~~----~~~g~tvi~~tH~~ 122 (224)
-+.+++.+ ..+|+++++|..+.-.. . ..++.+ ++.+++||+++|-.
T Consensus 449 ~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~ 520 (1706)
T 3cmw_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 520 (1706)
T ss_dssp HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEE
T ss_pred HHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 22233322 46899999999975321 1 122233 56799999999864
No 253
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=1.9e-05 Score=70.65 Aligned_cols=73 Identities=19% Similarity=0.371 Sum_probs=47.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 86 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~ 86 (224)
++..-++|.||||+|||+|.+++|+.+.. .+..+.. .++. ... +......-|..+..|-..
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~----~fi~v~~-s~l~------sk~--------vGesek~ir~lF~~Ar~~ 274 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTSA----TFLRIVG-SELI------QKY--------LGDGPRLCRQIFKVAGEN 274 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHTC----EEEEEES-GGGC------CSS--------SSHHHHHHHHHHHHHHHT
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhCC----CEEEEEH-HHhh------hcc--------CchHHHHHHHHHHHHHhc
Confidence 44456999999999999999999997743 3333322 1111 000 011122345567777778
Q ss_pred CCCEEEEeCCCC
Q 027390 87 MPEVIIVDEIGT 98 (224)
Q Consensus 87 ~p~llilDEp~~ 98 (224)
.|.+|++||..+
T Consensus 275 aP~IIfiDEiDa 286 (437)
T 4b4t_I 275 APSIVFIDEIDA 286 (437)
T ss_dssp CSEEEEEEEESS
T ss_pred CCcEEEEehhhh
Confidence 999999999854
No 254
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.87 E-value=8.2e-05 Score=77.27 Aligned_cols=82 Identities=23% Similarity=0.353 Sum_probs=52.5
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCC---------CCccHH
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV---------PEPSLQ 75 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~ 75 (224)
.+++|+++.|.||+|+|||||...++...... ++++.|++....+.. .. ++.+++ ...++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~-G~~v~Fi~~e~~~~~-------l~--a~~~G~dl~~l~v~~~~~~E- 1491 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDP-------IY--ARKLGVDIDNLLCSQPDTGE- 1491 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCH-------HH--HHHTTCCTTTCEEECCSSHH-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEEcccccCH-------HH--HHHcCCCchhceeecCChHH-
Confidence 58899999999999999999999887765444 678888764433210 00 112221 12233
Q ss_pred HHHHHHHHH--hcCCCEEEEeCCC
Q 027390 76 HKVMIEAVE--NHMPEVIIVDEIG 97 (224)
Q Consensus 76 qr~~la~al--~~~p~llilDEp~ 97 (224)
+-+.++..+ ...|++|++||..
T Consensus 1492 ~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1492 QALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGG
T ss_pred HHHHHHHHHHhcCCCCEEEEcChh
Confidence 222333333 4789999999984
No 255
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.86 E-value=6.7e-05 Score=67.21 Aligned_cols=108 Identities=17% Similarity=0.057 Sum_probs=64.8
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhH--HhHcCC---------CCccH
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT--ARRMQV---------PEPSL 74 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------~~~g~ 74 (224)
+++|+++.|.|+||+|||||+..++.......+..+.|+..... +.+...+ ....++ .+..+
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-------~~~l~~R~~~~~~~i~~~~l~~g~l~~~~ 269 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-------AAQLTLRMMCSEARIDMNRVRLGQLTDRD 269 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-------HHHHHHHHHHHHTTCCTTTCCGGGCCHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-------HHHHHHHHHHHHcCCCHHHHhCCCCCHHH
Confidence 78999999999999999999999888665422456666542111 0001000 001111 23445
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCChHh--HHHHHHHH-HcCCEEEEEEe
Q 027390 75 QHKVMIEAVENHMPEVIIVDEIGTEAE--AHACRSIA-ERGVMLIGTAH 120 (224)
Q Consensus 75 ~qr~~la~al~~~p~llilDEp~~~lD--~~~~~~~~-~~g~tvi~~tH 120 (224)
.+++.-+...+...++.+.|+|...++ ...++.+. +.+..+|++-+
T Consensus 270 ~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 270 FSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 666666665566778999998865544 22344454 44677777643
No 256
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.84 E-value=8e-06 Score=64.91 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 027390 11 SILFVGRPGVGKTTVMREIAR 31 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g 31 (224)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 257
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.82 E-value=9.7e-06 Score=64.09 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 11 SILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.++|+|+||||||||++.++|...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999853
No 258
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.79 E-value=0.00012 Score=75.96 Aligned_cols=108 Identities=21% Similarity=0.292 Sum_probs=67.1
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC--------CccHHHH
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP--------EPSLQHK 77 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~qr 77 (224)
+++|+++.|.||||+|||||+..++...... ++.+.|++...... +. .++++++. .....+-
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~-G~~vlyis~E~s~~-------~~--~a~~lGvd~~~L~I~~~~~~e~i 449 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALD-------PI--YARKLGVDIDNLLCSQPDTGEQA 449 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCC-------HH--HHHHTTCCTTTCEEECCSSHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCHH-------HH--HHHHcCCCHHHeEEeCCCCHHHH
Confidence 7899999999999999999998888766544 56788875432221 00 02222221 1111223
Q ss_pred HHHHHHH--hcCCCEEEEeCCCChH----------------hH----HHHHHH----HHcCCEEEEEEeCcc
Q 027390 78 VMIEAVE--NHMPEVIIVDEIGTEA----------------EA----HACRSI----AERGVMLIGTAHGEW 123 (224)
Q Consensus 78 ~~la~al--~~~p~llilDEp~~~l----------------D~----~~~~~~----~~~g~tvi~~tH~~~ 123 (224)
+.+++.+ ..+|+++++|..+.-. .. ..++.+ ++.+++||+++|-..
T Consensus 450 l~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~ 521 (2050)
T 3cmu_A 450 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 521 (2050)
T ss_dssp HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEE
T ss_pred HHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 3344433 4689999999986432 11 123333 467899999998743
No 259
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.79 E-value=1.3e-05 Score=61.36 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.+.+|+|||||||||++.+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999998544
No 260
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.78 E-value=1.1e-05 Score=63.01 Aligned_cols=27 Identities=37% Similarity=0.756 Sum_probs=23.6
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998644
No 261
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.78 E-value=4.2e-05 Score=63.59 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=22.9
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
+...+.|.||+|+|||||++.++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 44579999999999999999999864
No 262
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.76 E-value=4.2e-06 Score=69.40 Aligned_cols=25 Identities=40% Similarity=0.694 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
..++|.||+|+|||||+++++..+.
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 3488999999999999999998764
No 263
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.73 E-value=2.7e-05 Score=63.78 Aligned_cols=37 Identities=32% Similarity=0.405 Sum_probs=31.2
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 43 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~ 43 (224)
.+.+|.++.|.|++||||||+++.|+..+.. +..+..
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~ 58 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIM 58 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEE
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCcee
Confidence 4568999999999999999999999998865 355544
No 264
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.73 E-value=0.00012 Score=65.77 Aligned_cols=111 Identities=15% Similarity=0.091 Sum_probs=64.9
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhh--------HHhHcCC--CCccHH
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIG--------TARRMQV--PEPSLQ 75 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~--~~~g~~ 75 (224)
+.+|+.+.|.|+||+|||||+..++.-.... +..+.|+....... .+...... ..+. +. .+..+.
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlEms~~---ql~~R~~~~~~~i~~~~l~~-g~~~l~~~~~ 268 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKK---ENIKRLIVTAGSINAQKIKA-ARRDFASEDW 268 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSSSCTT---HHHHHHHHHHSCCCHHHHHH-TGGGTCCSCH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECCCCHH---HHHHHHHHHHcCCCHHHHhc-ccCCCCHHHH
Confidence 7899999999999999999998887765444 56777764211100 00000000 0000 11 223445
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCChHh--HHHHHHHH-HcCCE--EEEEEeC
Q 027390 76 HKVMIEAVENHMPEVIIVDEIGTEAE--AHACRSIA-ERGVM--LIGTAHG 121 (224)
Q Consensus 76 qr~~la~al~~~p~llilDEp~~~lD--~~~~~~~~-~~g~t--vi~~tH~ 121 (224)
+++.-+...+.+.++.|.|+|...++ ...+++++ +.+.. +|++-+-
T Consensus 269 ~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~L 319 (444)
T 3bgw_A 269 GKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYL 319 (444)
T ss_dssp HHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECS
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecH
Confidence 66666665666778999998865544 22344454 34666 7776543
No 265
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.72 E-value=7e-05 Score=61.01 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=57.2
Q ss_pred cceecCcEEEEEcCCCCcHHH-HHHHHHhcCCccCCCeEEEEc-CCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHH
Q 027390 4 DLLHYGKSILFVGRPGVGKTT-VMREIARVLSDEFQKRVVIVD-TSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIE 81 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTT-Ll~~i~g~l~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la 81 (224)
..-..|.+..+.||.|||||| |++.+-..... +.++.++. ..........+....-...+-..+.+... +.
T Consensus 23 ~~~~~G~I~vitG~M~sGKTT~Llr~~~r~~~~--g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~d-----i~ 95 (219)
T 3e2i_A 23 ETYHSGWIECITGSMFSGKSEELIRRLRRGIYA--KQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASE-----IM 95 (219)
T ss_dssp ----CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC-----------CBTTBCCEEEEESSGGG-----GG
T ss_pred eccCCceEEEEECCCCCCHHHHHHHHHHHHHHc--CCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHH-----HH
Confidence 344679999999999999999 77776555432 34554431 11000000000000000000000001110 00
Q ss_pred HHHhcCCCEEEEeCCCChH--hHHHHHHHHHcCCEEEEEEeCcch
Q 027390 82 AVENHMPEVIIVDEIGTEA--EAHACRSIAERGVMLIGTAHGEWL 124 (224)
Q Consensus 82 ~al~~~p~llilDEp~~~l--D~~~~~~~~~~g~tvi~~tH~~~~ 124 (224)
..+..+++++++||..--- -.+.+.++.+.|+.||+..=+.++
T Consensus 96 ~~i~~~~dvV~IDEaQFf~~~~v~~l~~la~~gi~Vi~~GLd~DF 140 (219)
T 3e2i_A 96 THDLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDF 140 (219)
T ss_dssp GSCCTTCSEEEECCGGGSCTHHHHHHHHHHHTTCEEEEEEESBCT
T ss_pred HHHhcCCCEEEEechhcCCHHHHHHHHHHHHCCCEEEEeeccccc
Confidence 0013578999999995421 245566777889999998877654
No 266
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.71 E-value=0.00021 Score=62.05 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027390 11 SILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
.++|+|++|||||||++.|+|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999994
No 267
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.71 E-value=1.8e-05 Score=61.22 Aligned_cols=27 Identities=26% Similarity=0.561 Sum_probs=23.3
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
++|..++|+|+||+|||||++.+++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999864
No 268
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.71 E-value=1.7e-05 Score=63.02 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.68 E-value=2.5e-05 Score=60.50 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=24.2
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.|.++.|.|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998774
No 270
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.67 E-value=0.00014 Score=57.26 Aligned_cols=23 Identities=48% Similarity=0.772 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.+.|.||+|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998865
No 271
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.67 E-value=2.7e-05 Score=61.19 Aligned_cols=28 Identities=39% Similarity=0.529 Sum_probs=25.4
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhc
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
...+|.+++|+|++||||||+.+.|+..
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999999986
No 272
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.67 E-value=0.00012 Score=66.49 Aligned_cols=72 Identities=28% Similarity=0.482 Sum_probs=44.7
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHh
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 85 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~ 85 (224)
+.+...++|.||+|+|||+++++|+.... ..+..++.. .+. ....+ ......+-.+..+..
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~~----~~fv~vn~~-~l~------~~~~g--------~~~~~~~~~f~~A~~ 295 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANETG----AFFFLINGP-EIM------SKLAG--------ESESNLRKAFEEAEK 295 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHCS----SEEEEEEHH-HHH------TSCTT--------HHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHhC----CCEEEEEch-Hhh------hhhcc--------hhHHHHHHHHHHHHh
Confidence 34556799999999999999999998662 334443211 110 00000 001122335666667
Q ss_pred cCCCEEEEeCC
Q 027390 86 HMPEVIIVDEI 96 (224)
Q Consensus 86 ~~p~llilDEp 96 (224)
..|.+|+|||.
T Consensus 296 ~~p~iLfLDEI 306 (489)
T 3hu3_A 296 NAPAIIFIDEL 306 (489)
T ss_dssp TCSEEEEEESH
T ss_pred cCCcEEEecch
Confidence 88999999998
No 273
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.66 E-value=2.1e-05 Score=60.29 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 11 SILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999998764
No 274
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.65 E-value=2.7e-05 Score=61.28 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 43 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~ 43 (224)
.+++|+|++|||||||++.|.+.+.+. +.++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~-g~~v~~ 39 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR-GIRPGL 39 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc-CCceeE
Confidence 589999999999999999999987654 344444
No 275
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.65 E-value=9.8e-05 Score=66.41 Aligned_cols=31 Identities=39% Similarity=0.620 Sum_probs=25.6
Q ss_pred ceecCc--EEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 5 LLHYGK--SILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 5 ~i~~Ge--~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
.+..|. .++|.||+|+|||||++.|+..+..
T Consensus 44 ~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 44 AIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp HHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 445555 4999999999999999999998753
No 276
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.63 E-value=5e-05 Score=65.72 Aligned_cols=25 Identities=40% Similarity=0.453 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
+..+.|.||+|+|||||++.++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999876
No 277
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.63 E-value=0.00021 Score=58.81 Aligned_cols=108 Identities=16% Similarity=0.106 Sum_probs=56.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC-CCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHh
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-SNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 85 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~ 85 (224)
..|.+..+.|+.||||||.+--.+...... +.++.++.- ...... ..+....-...+...+.+..+ .+.. +
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~-g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~d----i~~~--~ 88 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRD----VAQE--A 88 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEEEETTCCCC------------CEEEEESSGGG----GHHH--H
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHH----HHHH--h
Confidence 458999999999999997665444433332 456655421 111000 011000000000001111111 1111 2
Q ss_pred cCCCEEEEeCCCChHhH-HHHHHHHHcCCEEEEEEeCc
Q 027390 86 HMPEVIIVDEIGTEAEA-HACRSIAERGVMLIGTAHGE 122 (224)
Q Consensus 86 ~~p~llilDEp~~~lD~-~~~~~~~~~g~tvi~~tH~~ 122 (224)
.+.+++++||..--.+. +.++.+.+.|+.||++.++.
T Consensus 89 ~~~dvViIDEaQF~~~v~el~~~l~~~gi~VI~~GL~~ 126 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDG 126 (234)
T ss_dssp TTCSEEEESSGGGCTTHHHHHHHHHHTTCEEEEECCSB
T ss_pred ccCCEEEEEchhhhhhHHHHHHHHHhCCCEEEEEeccc
Confidence 67899999999554443 33455667899999999983
No 278
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.62 E-value=2.9e-05 Score=60.74 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=24.7
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
++++.++.|.|++||||||+.+.|+..+
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3567899999999999999999998755
No 279
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.62 E-value=1.3e-05 Score=69.12 Aligned_cols=33 Identities=36% Similarity=0.675 Sum_probs=28.6
Q ss_pred cceecCcE--EEEEcCCCCcHHHHHHHHHhcCCcc
Q 027390 4 DLLHYGKS--ILFVGRPGVGKTTVMREIARVLSDE 36 (224)
Q Consensus 4 ~~i~~Ge~--~~l~G~nGsGKTTLl~~i~g~l~~~ 36 (224)
..++.|++ ++|.||||+||||+++++++.+.+.
T Consensus 39 ~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 39 KFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp HHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 45677887 9999999999999999999987543
No 280
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.61 E-value=6e-05 Score=67.55 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=31.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 47 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~ 47 (224)
.+++++|++|+||||++..|++.+... +.++.+++.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~-G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR-GLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH-HCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecc
Confidence 589999999999999999999988765 6778887654
No 281
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.61 E-value=3.5e-05 Score=60.06 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=23.7
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
+|.++.|.|++||||||+.+.|+..+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998664
No 282
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.60 E-value=3e-05 Score=65.72 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=23.6
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
++...++|.||||+|||+|.++|+..+.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3345788899999999999999998773
No 283
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.60 E-value=3.6e-05 Score=62.87 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=24.7
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.+|.+++|+|+|||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 578899999999999999999999855
No 284
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.59 E-value=1.4e-05 Score=77.03 Aligned_cols=74 Identities=22% Similarity=0.363 Sum_probs=45.8
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHH
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 84 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al 84 (224)
.+.+++.++|.||||+|||||+++|++.+... ...+. ...+ .... ++- .....+..+..+.
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~~~~----~i~v~-~~~l------~~~~------~g~--~~~~i~~~f~~a~ 567 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIK-GPEL------LTMW------FGE--SEANVREIFDKAR 567 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC----CCCCC-CSSS------TTCC------TTT--SSHHHHHHHHHHH
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHhCCC----EEEEe-chHh------hhhh------cCc--cHHHHHHHHHHHH
Confidence 35688899999999999999999999987532 11111 1111 0000 111 1122233455555
Q ss_pred hcCCCEEEEeCCC
Q 027390 85 NHMPEVIIVDEIG 97 (224)
Q Consensus 85 ~~~p~llilDEp~ 97 (224)
...|.+|++||..
T Consensus 568 ~~~p~vl~iDEid 580 (806)
T 1ypw_A 568 QAAPCVLFFDELD 580 (806)
T ss_dssp HHCSBCCCCSSHH
T ss_pred hcCCeEEEEEChh
Confidence 6789999999973
No 285
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.58 E-value=6.4e-05 Score=72.19 Aligned_cols=73 Identities=26% Similarity=0.448 Sum_probs=46.9
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 86 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~ 86 (224)
++-.-++|.||||+|||||.|++++.+. ..+..++.. ++. . . .......+-|-.+..|..+
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg----~~~~~v~~~-~l~------s-------k-~~gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETG----AFFFLINGP-EIM------S-------K-LAGESESNLRKAFEEAEKN 296 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTT----CEEEEEEHH-HHH------S-------S-CTTHHHHHHHHHHHHHTTS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC----CeEEEEEhH-Hhh------c-------c-cchHHHHHHHHHHHHHHHc
Confidence 4455699999999999999999998764 333333211 110 0 0 0001123344567777788
Q ss_pred CCCEEEEeCCCC
Q 027390 87 MPEVIIVDEIGT 98 (224)
Q Consensus 87 ~p~llilDEp~~ 98 (224)
.|.+|++||..+
T Consensus 297 ~PsIIfIDEiDa 308 (806)
T 3cf2_A 297 APAIIFIDELDA 308 (806)
T ss_dssp CSEEEEEESGGG
T ss_pred CCeEEEEehhcc
Confidence 999999999843
No 286
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.57 E-value=4.8e-05 Score=60.09 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=24.9
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999877
No 287
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.55 E-value=2.8e-05 Score=64.39 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=26.4
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
..+++.++.|+|+|||||||+.+.|+..+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356678999999999999999999998774
No 288
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.54 E-value=4.4e-05 Score=58.24 Aligned_cols=19 Identities=37% Similarity=0.691 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 027390 11 SILFVGRPGVGKTTVMREI 29 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i 29 (224)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999998
No 289
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.54 E-value=3.7e-05 Score=60.29 Aligned_cols=29 Identities=34% Similarity=0.471 Sum_probs=25.6
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
...++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 5 KLKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HHTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999999998755
No 290
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.53 E-value=4.7e-05 Score=61.12 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.+.+|+|||||||||++.+|.-.+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 489999999999999999987544
No 291
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.52 E-value=0.00014 Score=65.37 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=52.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC--cccCCCCcccchhhHHhHcCCCCcc--------HHHHHHH
Q 027390 11 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN--EIGGDGDIPHSAIGTARRMQVPEPS--------LQHKVMI 80 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g--------~~qr~~l 80 (224)
.++|+|++|+|||||++.|+|............-.... ..... ...... +..+| +.+....
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~-~~~~~l--------iDT~G~~~~~~~~~~~~~~~ 95 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL-NYDFNL--------IDTGGIDIGDEPFLAQIRQQ 95 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTC-SSCCEE--------ECCCC------CCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEEC-CceEEE--------EECCCCCCcchHHHHHHHHH
Confidence 69999999999999999998853211000000000000 00000 000000 01122 4444445
Q ss_pred HHHHhcCCCEEEEeCCC----ChHhHHHHHHHHHcCCEEEEEEeCcc
Q 027390 81 EAVENHMPEVIIVDEIG----TEAEAHACRSIAERGVMLIGTAHGEW 123 (224)
Q Consensus 81 a~al~~~p~llilDEp~----~~lD~~~~~~~~~~g~tvi~~tH~~~ 123 (224)
+.....+++++|+.-.. ...|....+.+.+.++.+|++.+-.+
T Consensus 96 ~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D 142 (456)
T 4dcu_A 96 AEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLD 142 (456)
T ss_dssp HHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-
T ss_pred HHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECcc
Confidence 55555667777765442 34455555666667787777766554
No 292
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.51 E-value=6.2e-05 Score=59.78 Aligned_cols=30 Identities=30% Similarity=0.325 Sum_probs=26.3
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
...+|.+++|.|++||||||+.+.|+..+.
T Consensus 6 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 6 DKKKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CCBCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hhhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346789999999999999999999997654
No 293
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.50 E-value=4.9e-05 Score=59.14 Aligned_cols=29 Identities=41% Similarity=0.557 Sum_probs=24.9
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.+.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 7 EFMLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp TTCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 34567889999999999999999998655
No 294
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.50 E-value=5.8e-05 Score=58.84 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.+.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999997663
No 295
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.50 E-value=5.5e-05 Score=61.65 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=26.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
...+++..++.|+|||||||||..+.|+..+
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456777899999999999999999998755
No 296
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.49 E-value=5.8e-05 Score=58.22 Aligned_cols=22 Identities=50% Similarity=0.702 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHh
Q 027390 10 KSILFVGRPGVGKTTVMREIAR 31 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g 31 (224)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999997
No 297
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.49 E-value=3e-05 Score=67.75 Aligned_cols=32 Identities=25% Similarity=0.666 Sum_probs=27.8
Q ss_pred cceecCcE--EEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 4 DLLHYGKS--ILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 4 ~~i~~Ge~--~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
..+++|++ ++|+|+|||||||+.++|++.+..
T Consensus 17 ~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 17 NRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp HTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 35678888 999999999999999999998753
No 298
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.48 E-value=7.3e-05 Score=58.62 Aligned_cols=35 Identities=31% Similarity=0.256 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~ 45 (224)
.+++|+|++|||||||++.|+..+... +.++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~-g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE-GWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc-CCeeeEEE
Confidence 479999999999999999999988654 45666554
No 299
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.48 E-value=4.1e-05 Score=59.34 Aligned_cols=24 Identities=42% Similarity=0.729 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 11 SILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
++.|+|+|||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998664
No 300
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.47 E-value=0.00068 Score=61.51 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=31.1
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~ 45 (224)
+.+|+++.|.|+||+|||||+..++--.....+..+.|+.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 7899999999999999999988877655432145677764
No 301
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.47 E-value=6.4e-05 Score=59.51 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=25.2
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5779999999999999999999987754
No 302
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.47 E-value=5.4e-05 Score=59.59 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 11 SILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 303
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.46 E-value=6.8e-05 Score=60.19 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=22.1
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHh
Q 027390 8 YGKSILFVGRPGVGKTTVMREIAR 31 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g 31 (224)
.+-+++|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999997
No 304
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.45 E-value=6.9e-05 Score=58.04 Aligned_cols=22 Identities=32% Similarity=0.693 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027390 11 SILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 305
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.45 E-value=6.5e-05 Score=62.30 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.+++|+||||||||||.+.|+..+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3789999999999999999998653
No 306
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.43 E-value=5.8e-05 Score=64.24 Aligned_cols=27 Identities=37% Similarity=0.566 Sum_probs=23.6
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
++.| +++|+|+||||||||++.|.|..
T Consensus 6 ~r~~-~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 6 SYCG-FIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CEEE-EEEEECSSSSSHHHHHHHHHTCS
T ss_pred ccCC-EEEEECCCCCCHHHHHHHHHCCC
Confidence 3444 89999999999999999999974
No 307
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.43 E-value=7.8e-05 Score=58.15 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
++.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998654
No 308
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.42 E-value=8e-05 Score=59.18 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=25.3
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
++|.+++|.|++||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999997664
No 309
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.41 E-value=0.00039 Score=64.44 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=29.3
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 44 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~ 44 (224)
.+.++.|.|+||+||||+++.+...+... +.++.+.
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~-g~~Vl~~ 238 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESL-GLEVGLC 238 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEe
Confidence 46799999999999999999999887654 4566554
No 310
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.41 E-value=6.6e-05 Score=58.95 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=25.3
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
++.+.+++|.|++||||||+.+.|+..+.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45678999999999999999999987653
No 311
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.39 E-value=0.0011 Score=56.31 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
..+.+.||+|+||||+++.++..+.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 3677788899999999999998774
No 312
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.39 E-value=0.00012 Score=65.74 Aligned_cols=28 Identities=39% Similarity=0.714 Sum_probs=24.7
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
++..++|.||||+|||||.++++..+..
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 4567999999999999999999998753
No 313
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.39 E-value=9.8e-05 Score=59.39 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=23.9
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
++|.+++|.|++||||||+.+.|+..+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3577899999999999999999987653
No 314
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.39 E-value=9.8e-05 Score=64.82 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=29.8
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~ 45 (224)
.+..++|+|++||||||+++.++...... +..+.+++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-GSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-CCEEEEEe
Confidence 46689999999999999999999877554 55666554
No 315
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.39 E-value=3.4e-05 Score=61.42 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE
Q 027390 11 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 44 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~ 44 (224)
+++|.|++||||||+++.|+..+... +..+.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~-g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA-GRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE-EEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 68999999999999999999988643 3344433
No 316
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.38 E-value=7.5e-05 Score=58.12 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999863
No 317
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00029 Score=60.62 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=24.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
++..+.|.||||+|||++++.++..+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998875
No 318
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.37 E-value=7.6e-05 Score=61.48 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=22.9
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
..-+++|.||+||||||+.+.|+..+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999997653
No 319
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.36 E-value=7e-05 Score=58.09 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=19.5
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
++.++.|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567999999999999999999987654
No 320
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.36 E-value=0.00082 Score=57.28 Aligned_cols=25 Identities=44% Similarity=0.648 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
..++|.||+|+|||||++.++..+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 321
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.35 E-value=0.0001 Score=57.38 Aligned_cols=33 Identities=30% Similarity=0.546 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE
Q 027390 11 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 44 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~ 44 (224)
++.|.|++||||||+.+.|+..+... +..+.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ-GINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CceEEEE
Confidence 68999999999999999999877532 3334444
No 322
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.35 E-value=0.00011 Score=57.78 Aligned_cols=25 Identities=28% Similarity=0.206 Sum_probs=22.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhc
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
+..+++|+|++||||||+.+.|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3468999999999999999999985
No 323
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.35 E-value=0.00078 Score=61.41 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
...++|.||+|+||||++++++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999999877
No 324
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.34 E-value=9.1e-05 Score=62.66 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=23.9
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
..+.++.|.|||||||||+.+.|+..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998755
No 325
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.32 E-value=0.00014 Score=57.60 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=23.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
..+.+++|.|++||||||+.+.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998765
No 326
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.31 E-value=0.00012 Score=59.13 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=22.9
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
..++.+++|.|++||||||+.+.|+..+
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3566799999999999999999999755
No 327
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.31 E-value=0.00013 Score=55.93 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
-++++|.|++||||||+.+.|+..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 37899999999999999999987654
No 328
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.26 E-value=0.00013 Score=57.64 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 11 SILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
+++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999998664
No 329
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.25 E-value=0.00015 Score=57.84 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997654
No 330
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.24 E-value=0.00017 Score=59.90 Aligned_cols=28 Identities=39% Similarity=0.618 Sum_probs=24.0
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.++.++.|.|++||||||+.+.|+..+.
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999998754
No 331
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.24 E-value=0.00017 Score=56.51 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 11 SILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
+++|.|++||||||+.+.|+..+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987743
No 332
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.22 E-value=0.0011 Score=63.11 Aligned_cols=34 Identities=32% Similarity=0.675 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc
Q 027390 11 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~ 45 (224)
.++|.||+|+|||++.+.|+..+... +..+..++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~-~~~~i~i~ 556 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGD-EESMIRID 556 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSC-TTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC-CcceEEEe
Confidence 69999999999999999999987433 34444443
No 333
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.22 E-value=0.00015 Score=64.24 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=25.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhc
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
..+..|..++|+|+||+|||||++.|++.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 35678889999999999999999999987
No 334
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.22 E-value=0.00053 Score=54.92 Aligned_cols=124 Identities=15% Similarity=0.049 Sum_probs=65.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHH--------hHcCCCCcc-----
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTA--------RRMQVPEPS----- 73 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~g----- 73 (224)
++| .+.+.+.||.||||+.-.++-...-. +.+|.++.-...- . ..-+....... ..+.+....
T Consensus 27 ~~g-~i~v~tG~GkGKTTaA~GlalRA~g~-G~rV~~vQF~Kg~-~-~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 27 ERG-IIIVFTGNGKGKTTAAFGTAARAVGH-GKNVGVVQFIKGT-W-PNGERNLLEPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCC-CEEEEESSSSCHHHHHHHHHHHHHHT-TCCEEEEESSCCS-S-CCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred cCc-eEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeCCC-C-CccHHHHHHhCCcEEEEcccccccCCCCcHHHH
Confidence 344 67788889999999986665444333 5677776221100 0 00000000000 011111111
Q ss_pred --HHHHHHHHHHHh--cCCCEEEEeCCCChHh-----HHHHHHH-HHc--CCEEEEEEeC-cchHHhhccceee
Q 027390 74 --LQHKVMIEAVEN--HMPEVIIVDEIGTEAE-----AHACRSI-AER--GVMLIGTAHG-EWLENIIKNPILS 134 (224)
Q Consensus 74 --~~qr~~la~al~--~~p~llilDEp~~~lD-----~~~~~~~-~~~--g~tvi~~tH~-~~~~~~~~d~v~~ 134 (224)
.+.....++..+ .+.|+|||||....+. .+.+.++ .++ ...||+|+.. ....-.+||-+-+
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTe 176 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSE 176 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceee
Confidence 112223333444 5689999999977543 4444443 332 5689999888 4445567887743
No 335
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.22 E-value=0.00017 Score=57.60 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998655
No 336
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.22 E-value=6.4e-05 Score=68.63 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=24.0
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
+.+| +.+|+|+||||||||+.+|..++
T Consensus 58 f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 58 LGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp CCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 4567 99999999999999999997774
No 337
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.22 E-value=0.00015 Score=58.30 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=23.5
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.+.++.|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987653
No 338
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.21 E-value=0.00018 Score=55.99 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 11 SILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 339
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.21 E-value=0.00015 Score=56.47 Aligned_cols=25 Identities=40% Similarity=0.725 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999987653
No 340
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.21 E-value=0.00019 Score=58.44 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCcc
Q 027390 11 SILFVGRPGVGKTTVMREIARVLSDE 36 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~~ 36 (224)
.++|+|++|+|||||++.|+|.....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~ 56 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFH 56 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCc
Confidence 58999999999999999999976543
No 341
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.20 E-value=0.00012 Score=58.19 Aligned_cols=25 Identities=44% Similarity=0.671 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 11 SILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
.++|.||+|+|||||++.++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 8999999999999999999987643
No 342
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.20 E-value=0.00017 Score=60.00 Aligned_cols=24 Identities=33% Similarity=0.682 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 11 SILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.++|+|++|||||||++.++|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999998753
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.20 E-value=0.00019 Score=55.84 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
..+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998755
No 344
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.19 E-value=0.0005 Score=57.75 Aligned_cols=22 Identities=41% Similarity=0.733 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhcC
Q 027390 12 ILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 12 ~~l~G~nGsGKTTLl~~i~g~l 33 (224)
+.|.||+|+||||+++.++..+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999999876
No 345
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.19 E-value=0.00017 Score=55.27 Aligned_cols=25 Identities=52% Similarity=0.761 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999997653
No 346
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.19 E-value=0.0002 Score=56.59 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999998655
No 347
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.18 E-value=0.0002 Score=56.95 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 11 SILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.+.|+||+|||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999876653
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.18 E-value=0.00022 Score=54.46 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 11 SILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988553
No 349
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.17 E-value=0.00018 Score=62.86 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHh
Q 027390 10 KSILFVGRPGVGKTTVMREIAR 31 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g 31 (224)
.+.+|+|+|||||||++.+|.=
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999873
No 350
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.17 E-value=0.00023 Score=57.27 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=23.2
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
+|.+++|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998765
No 351
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.16 E-value=0.00024 Score=62.85 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=28.3
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
.+.+|+.++|+||+|+|||||++.|++.+..
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 5789999999999999999999999998753
No 352
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.16 E-value=0.00081 Score=64.96 Aligned_cols=35 Identities=37% Similarity=0.661 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~ 45 (224)
..++|.||+|+|||++.+.|+..+... +..+..++
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~-~~~~i~i~ 623 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRID 623 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSS-GGGEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC-CCcEEEEe
Confidence 479999999999999999999988543 34455554
No 353
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.15 E-value=0.00023 Score=57.41 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
++.|+|||||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999755
No 354
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.15 E-value=0.00023 Score=58.44 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++-+++|+||+||||||+.+.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 466789999999999999999998644
No 355
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.14 E-value=0.00015 Score=59.09 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=23.4
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHh
Q 027390 4 DLLHYGKSILFVGRPGVGKTTVMREIAR 31 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g 31 (224)
..+.+|+.+++.||+||||||++..+..
T Consensus 71 ~~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 71 EAISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 3466899999999999999998876653
No 356
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.11 E-value=0.0025 Score=54.12 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=25.0
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
..+..+.|.||+|+|||++.+.|+.....
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~ 51 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSAR 51 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcc
Confidence 45678999999999999999999987643
No 357
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.08 E-value=0.0003 Score=56.88 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998755
No 358
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.07 E-value=0.00037 Score=66.95 Aligned_cols=73 Identities=23% Similarity=0.413 Sum_probs=46.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 86 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~ 86 (224)
.+..-++|.||||+|||.|.+++++..... ...+. ..++ ...+ +......-|..+..|-..
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~----f~~v~-~~~l-------------~s~~-vGese~~vr~lF~~Ar~~ 569 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIK-GPEL-------------LTMW-FGESEANVREIFDKARQA 569 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTTCE----EEECC-HHHH-------------HTTT-CSSCHHHHHHHHHHHHTT
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhCCc----eEEec-cchh-------------hccc-cchHHHHHHHHHHHHHHc
Confidence 334458999999999999999999977532 22221 1111 0011 111223345567777778
Q ss_pred CCCEEEEeCCCC
Q 027390 87 MPEVIIVDEIGT 98 (224)
Q Consensus 87 ~p~llilDEp~~ 98 (224)
.|.+|++||..+
T Consensus 570 ~P~IifiDEiDs 581 (806)
T 3cf2_A 570 APCVLFFDELDS 581 (806)
T ss_dssp CSEEEECSCGGG
T ss_pred CCceeechhhhH
Confidence 999999999954
No 359
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.07 E-value=0.00028 Score=62.99 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 11 SILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.++|+|+||||||||++.|+|...
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcc
Confidence 799999999999999999999753
No 360
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.07 E-value=0.00025 Score=62.03 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 11 SILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
+++|+|+||||||||++.|+|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 489999999999999999999764
No 361
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.00034 Score=54.35 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
-.++++|++|||||||++.+++..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999865
No 362
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.05 E-value=0.00032 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 363
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.04 E-value=0.00038 Score=56.54 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=24.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
..+..+.|.|++||||||+.+.|+..+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4557899999999999999999997653
No 364
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.03 E-value=0.00033 Score=56.08 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998755
No 365
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.03 E-value=0.00035 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999988644
No 366
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.02 E-value=0.00035 Score=57.53 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
-+++|.|++||||||+.+.|+..+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999988654
No 367
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.02 E-value=0.00034 Score=53.10 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
No 368
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.02 E-value=0.00041 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.716 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998864
No 369
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.01 E-value=0.00037 Score=52.58 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027390 11 SILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 370
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.01 E-value=0.00039 Score=51.95 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998764
No 371
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.01 E-value=0.00023 Score=60.77 Aligned_cols=30 Identities=33% Similarity=0.598 Sum_probs=24.8
Q ss_pred ceecC--cEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 5 LLHYG--KSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 5 ~i~~G--e~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
++..| ..++|.||||+||||+++.+++.+.
T Consensus 52 ~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 52 TLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34445 4499999999999999999999864
No 372
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.01 E-value=0.00038 Score=55.42 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.-+++|+|++||||||+.+.|+..+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999763
No 373
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.00 E-value=0.00038 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 374
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.00 E-value=0.00035 Score=53.54 Aligned_cols=28 Identities=29% Similarity=0.567 Sum_probs=24.0
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
.+..+.|.||+|+|||||++.++..+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3567899999999999999999987643
No 375
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.99 E-value=0.00053 Score=52.25 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=23.7
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++.-.++|+|++|+|||||++.+.+-.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3456689999999999999999998743
No 376
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.99 E-value=0.00035 Score=59.50 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
+++|+|++|+|||||++.+.|.-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999864
No 377
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.99 E-value=0.00029 Score=53.14 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999998654
No 378
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.98 E-value=0.00041 Score=52.32 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998865
No 379
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.98 E-value=0.0012 Score=60.19 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=29.5
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 46 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~ 46 (224)
+..+++|+|++||||||++..|+..+... +.++.+++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~-G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK-GWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEec
Confidence 34589999999999999999999877654 566776653
No 380
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.97 E-value=0.00039 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998654
No 381
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.97 E-value=0.00043 Score=52.27 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 382
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.96 E-value=0.00041 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+--
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 383
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.96 E-value=0.00044 Score=52.69 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 384
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.96 E-value=0.00044 Score=52.07 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 385
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.95 E-value=0.00042 Score=58.10 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|+||+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 386
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.95 E-value=0.00045 Score=51.94 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
No 387
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.94 E-value=0.00046 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 388
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.91 E-value=0.00039 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 389
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.91 E-value=0.00066 Score=51.07 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=25.3
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
..+..+.|.||+|+|||++.+.|+.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 46678999999999999999999987654
No 390
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.91 E-value=0.0031 Score=56.39 Aligned_cols=40 Identities=28% Similarity=0.538 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN 48 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~ 48 (224)
..+++++|++|+||||+.-.|+..+....+.++.+++.+.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4689999999999999999999887643256788776543
No 391
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.91 E-value=0.00048 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998763
No 392
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.91 E-value=0.00048 Score=53.51 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
-.++|+|++|+|||||++.+.+--
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 393
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.90 E-value=0.00052 Score=51.64 Aligned_cols=22 Identities=18% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027390 11 SILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
.++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999874
No 394
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.90 E-value=0.00068 Score=54.83 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=29.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 44 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~ 44 (224)
.+|.++.|.|++||||||+++.|+..+... +..+...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v~~~ 40 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRER-GIEVQLT 40 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcccc
Confidence 468899999999999999999999888654 3444433
No 395
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.90 E-value=0.00056 Score=59.39 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=30.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 47 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~ 47 (224)
..-+++|+|++|+|||||++.|+..+... +.++.+++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~-g~kV~vi~~D 116 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIER-GHRVAVLAVD 116 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhC-CCceEEEecC
Confidence 34589999999999999999999887544 5666665433
No 396
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.90 E-value=0.00037 Score=54.00 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 027390 10 KSILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
-.++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 397
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.89 E-value=0.00054 Score=53.04 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999864
No 398
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.89 E-value=0.00063 Score=52.60 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCcc
Q 027390 11 SILFVGRPGVGKTTVMREIARVLSDE 36 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~~ 36 (224)
.++|+|++|+|||||++.+.+.....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~~ 41 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPEG 41 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccc
Confidence 58999999999999999999876543
No 399
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.88 E-value=0.00055 Score=53.51 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 027390 10 KSILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
-.++++|++|+|||||++.+.+-
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999974
No 400
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.88 E-value=0.00051 Score=57.74 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHh
Q 027390 9 GKSILFVGRPGVGKTTVMREIAR 31 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g 31 (224)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 401
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.88 E-value=0.00054 Score=52.63 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 402
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.87 E-value=0.00055 Score=57.47 Aligned_cols=23 Identities=48% Similarity=0.647 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 027390 10 KSILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
.++.|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999873
No 403
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.87 E-value=0.00055 Score=52.69 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998744
No 404
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.87 E-value=0.0006 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 405
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.87 E-value=0.00054 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998864
No 406
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.86 E-value=0.00048 Score=53.09 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998754
No 407
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.86 E-value=0.00057 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
No 408
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.84 E-value=0.00037 Score=54.92 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=20.7
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHh
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIAR 31 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g 31 (224)
++. .++++|++|+|||||++.+.+
T Consensus 24 ~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred CCc-EEEEECCCCCCHHHHHHHHhc
Confidence 344 589999999999999999976
No 409
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.84 E-value=0.00062 Score=56.01 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 11 SILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.++|+|++|+|||||++.|.|.-.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 589999999999999999998653
No 410
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.84 E-value=0.0014 Score=63.31 Aligned_cols=25 Identities=32% Similarity=0.724 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
..++|+||||+||||+++.++..+.
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHh
Confidence 4589999999999999999999874
No 411
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.83 E-value=0.00064 Score=51.68 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 412
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.83 E-value=0.00061 Score=51.79 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 413
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.82 E-value=0.00066 Score=50.98 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999997643
No 414
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.82 E-value=0.00065 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998754
No 415
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.81 E-value=0.00071 Score=53.70 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
-.++|+|++|+|||||++.+++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999865
No 416
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.81 E-value=0.004 Score=59.12 Aligned_cols=23 Identities=48% Similarity=0.804 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|.||+|+|||++.+.++..+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 79999999999999999999987
No 417
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.81 E-value=0.00054 Score=56.10 Aligned_cols=30 Identities=37% Similarity=0.491 Sum_probs=23.2
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
..+|.++.|.|++||||||+++.|+..+..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999987753
No 418
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.80 E-value=0.00068 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+++-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 419
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.79 E-value=0.0007 Score=51.65 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 11 SILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.++++|++|+|||||++.+.+-..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 589999999999999999987543
No 420
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.79 E-value=0.00072 Score=51.63 Aligned_cols=23 Identities=17% Similarity=0.485 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 421
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.79 E-value=0.0007 Score=57.56 Aligned_cols=27 Identities=33% Similarity=0.580 Sum_probs=23.4
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.+.| .++|+|++|+|||||++.+.|.-
T Consensus 5 ~~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 5 TYSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp CEEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred ccCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 4556 69999999999999999999853
No 422
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.79 E-value=0.00086 Score=50.61 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=22.3
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
++.-.++++|++|+|||||++.+.+-.
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 344468999999999999999997643
No 423
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.79 E-value=0.00073 Score=53.82 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~ 45 (224)
-.++|+|++|||||||++.+++..... .++.++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~--~~~~~i~ 64 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE--VKIGAML 64 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT--SCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEe
Confidence 478999999999999999999875432 3444443
No 424
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.78 E-value=0.00068 Score=52.09 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998754
No 425
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.78 E-value=0.0004 Score=53.32 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=20.8
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHh
Q 027390 8 YGKSILFVGRPGVGKTTVMREIAR 31 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g 31 (224)
+.-.++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455799999999999999998874
No 426
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.77 E-value=0.00071 Score=56.11 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|.+|||||||++.++|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 427
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.77 E-value=0.0059 Score=52.27 Aligned_cols=29 Identities=24% Similarity=0.568 Sum_probs=24.1
Q ss_pred eecCc---EEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 6 LHYGK---SILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 6 i~~Ge---~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
+..|. .+.+.||+|+||||+.+.++..+.
T Consensus 18 i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 18 YQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp HHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 44454 599999999999999999998764
No 428
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.77 E-value=0.00067 Score=54.18 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
+.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998653
No 429
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.75 E-value=0.00078 Score=59.83 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.9
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
...++.|+|++||||||+.+.|+..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999988654
No 430
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.75 E-value=0.0013 Score=53.84 Aligned_cols=39 Identities=33% Similarity=0.536 Sum_probs=31.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN 48 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~ 48 (224)
+.-++.+.|+.|+|||||++.|+..+. . +.++.+++.+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~-g~~v~vvd~D~ 51 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-D-NYKVAYVNLDT 51 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-T-TSCEEEEECCS
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-C-CCeEEEEeCCC
Confidence 345889999999999999999998877 4 67787776443
No 431
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.75 E-value=0.00079 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 432
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.74 E-value=0.00075 Score=52.14 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 433
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.74 E-value=0.00079 Score=52.62 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998654
No 434
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.73 E-value=0.00082 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999754
No 435
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.73 E-value=0.00082 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 436
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.73 E-value=0.00083 Score=55.21 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|||||||++.|.+.-
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 437
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.73 E-value=0.00098 Score=57.77 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=23.9
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
++.++.|+||+|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998663
No 438
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.73 E-value=0.0008 Score=52.29 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 68999999999999999998743
No 439
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.73 E-value=0.00085 Score=52.19 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027390 11 SILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999776654
No 440
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.71 E-value=0.00082 Score=52.36 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 441
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.71 E-value=0.00085 Score=54.47 Aligned_cols=29 Identities=34% Similarity=0.339 Sum_probs=26.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
.+|.++.+.|++||||||+++.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999988764
No 442
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.71 E-value=0.00096 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57999999999999999998754
No 443
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.70 E-value=0.0008 Score=58.99 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|+||+|||||++.|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999863
No 444
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.70 E-value=0.0009 Score=51.22 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 445
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.70 E-value=0.00079 Score=51.89 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.3
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
+.-.++++|++|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999998754
No 446
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.69 E-value=0.0011 Score=54.57 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=29.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~ 45 (224)
..+..+.|.||+|+|||++++.|+...... +....+++
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~-~~~~~~v~ 64 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSSRW-QGPFISLN 64 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTSTTT-TSCEEEEE
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcCcc-CCCeEEEe
Confidence 446689999999999999999999887543 34444443
No 447
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.69 E-value=0.0006 Score=59.47 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhcCC
Q 027390 12 ILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 12 ~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
++|+|++|+|||||++.|.+...
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEcCCCCCHHHHHHHHhCCCC
Confidence 68999999999999999987643
No 448
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.69 E-value=0.00043 Score=58.63 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=20.8
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
++-+++|.|++||||||+.+.|+..+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999998654
No 449
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.68 E-value=0.00092 Score=52.40 Aligned_cols=22 Identities=36% Similarity=0.681 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027390 11 SILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
.++|+|++|+|||||++.+++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 450
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.68 E-value=0.001 Score=54.73 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=26.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCcc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSDE 36 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~ 36 (224)
.+|.++.|.|++||||||+++.|+..+...
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 368899999999999999999999888654
No 451
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.68 E-value=0.00091 Score=51.22 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027390 11 SILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
.++|+|++|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999843
No 452
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.67 E-value=0.001 Score=58.20 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhc
Q 027390 9 GKSILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
|-.++|+|.||+|||||++.|++-
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 456899999999999999999984
No 453
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.67 E-value=0.00089 Score=52.55 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999865
No 454
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.67 E-value=0.001 Score=55.24 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 455
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.67 E-value=0.00096 Score=52.23 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 456
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.66 E-value=0.00086 Score=57.72 Aligned_cols=28 Identities=36% Similarity=0.735 Sum_probs=24.9
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
+|..+.|.||+|+||||+++.++..+..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4568999999999999999999998764
No 457
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.66 E-value=0.001 Score=51.56 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 458
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.66 E-value=0.00094 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998755
No 459
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.65 E-value=0.00098 Score=57.80 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999998764
No 460
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.64 E-value=0.00064 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 027390 11 SILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
.++|+|++|+|||||++.+++.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999998764
No 461
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.64 E-value=0.001 Score=51.38 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998754
No 462
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.64 E-value=0.001 Score=51.68 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 463
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.64 E-value=0.0011 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998654
No 464
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.64 E-value=0.0011 Score=54.11 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=24.0
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
+|.+++|.|+.||||||+++.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998774
No 465
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.64 E-value=0.00078 Score=54.48 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=24.0
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
+++...++|.||||+||||+..+|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444579999999999999999999877
No 466
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.63 E-value=0.0011 Score=51.55 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
=.++|+|++|+|||||++.+.+-.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998744
No 467
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.63 E-value=0.0011 Score=57.14 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.+++|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998663
No 468
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.63 E-value=0.0011 Score=51.78 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
-.++|+|++|+|||||++.+.+--
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
No 469
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.63 E-value=0.001 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 470
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.63 E-value=0.00082 Score=56.15 Aligned_cols=26 Identities=42% Similarity=0.770 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 9 GKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
+..+.|.||+|+||||+++.++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 55789999999999999999998773
No 471
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.62 E-value=0.0012 Score=53.34 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=26.1
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCcc
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLSDE 36 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~ 36 (224)
+|.++.|.|++||||||+++.|+..+...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58899999999999999999999888654
No 472
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.62 E-value=0.0011 Score=55.45 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|.+|||||||++.++|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 473
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.61 E-value=0.0011 Score=51.54 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998864
No 474
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.61 E-value=0.0011 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 475
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.61 E-value=0.00071 Score=55.95 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=23.9
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.+++.+++|.|+.||||||+++.|+..+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3567899999999999999999988776
No 476
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.60 E-value=0.0011 Score=53.42 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=23.0
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
..|..++|+||+|||||||...|+...
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 347789999999999999999988643
No 477
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.60 E-value=0.0011 Score=52.05 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
=.++|+|++|+|||||++.+.+--
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998654
No 478
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.0011 Score=52.58 Aligned_cols=23 Identities=39% Similarity=0.758 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999988654
No 479
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.0012 Score=51.01 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhc
Q 027390 9 GKSILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
.-.++++|++|+|||||++.+.+-
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999853
No 480
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.59 E-value=0.0011 Score=55.87 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
No 481
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.59 E-value=0.0027 Score=60.31 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=24.1
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
.+..++|+||+|+||||+++.++..+.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998763
No 482
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.59 E-value=0.0009 Score=51.10 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 483
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.59 E-value=0.0011 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 484
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.58 E-value=0.001 Score=57.56 Aligned_cols=27 Identities=37% Similarity=0.605 Sum_probs=24.1
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCC
Q 027390 8 YGKSILFVGRPGVGKTTVMREIARVLS 34 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~ 34 (224)
++..++|.||+|+||||+.++|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 456799999999999999999998873
No 485
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.58 E-value=0.00052 Score=58.50 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=25.7
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 6 LHYGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
+..|..+.|.||+|+|||||++.++..+..
T Consensus 43 l~~~~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 43 ICTGGHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp HHHTCCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred HHcCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 345678999999999999999999997753
No 486
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.55 E-value=0.00099 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
No 487
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.55 E-value=0.0013 Score=51.07 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 58999999999999999888654
No 488
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.54 E-value=0.0012 Score=52.36 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 489
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.54 E-value=0.0012 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
-.++++|++|+|||||++.+.+-.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998743
No 490
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.54 E-value=0.0013 Score=52.17 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 491
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.54 E-value=0.00072 Score=53.78 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
-.++|+|++|+|||||++.+.+.-
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 492
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.53 E-value=0.0013 Score=51.92 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++++|++|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 493
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.52 E-value=0.015 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.128 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 027390 10 KSILFVGRPGVGKTTVMREIARV 32 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~ 32 (224)
..+++.||+|+||||+.++++.-
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 38999999999999999999863
No 494
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.52 E-value=0.0014 Score=52.32 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 10 KSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
-.++|+|++|+|||||++.++.-...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999876543
No 495
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.52 E-value=0.00095 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
=.++|+|++|+|||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998765
No 496
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.52 E-value=0.0011 Score=51.42 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
-.++|+|++|+|||||++.+.+-.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998744
No 497
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.50 E-value=0.0012 Score=55.05 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 027390 11 SILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
.++|+|++|+|||||++.|.+.-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987643
No 498
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.49 E-value=0.0016 Score=53.07 Aligned_cols=29 Identities=38% Similarity=0.359 Sum_probs=26.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027390 7 HYGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
.+|.++.|.|++||||||+.+.|+..+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999988765
No 499
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.49 E-value=0.0014 Score=52.68 Aligned_cols=24 Identities=38% Similarity=0.704 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
-.++|+|++|+|||||++.+.+-.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 500
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.49 E-value=0.0014 Score=51.16 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcC
Q 027390 10 KSILFVGRPGVGKTTVMREIARVL 33 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l 33 (224)
-.++|+|++|+|||||++.+.+-.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998643
Done!