BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027391
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 97/167 (58%), Gaps = 15/167 (8%)
Query: 24 SFTNSRATYYGSPDGLGTPT--GACGFGGYGRNVNDANVAGVS-----RLWNNGAGCGTC 76
+ ++++T+YG P G G GACG+ ++V+ +G++ ++ +G GCG+C
Sbjct: 18 KWLDAKSTWYGKPTGAGPKDNGGACGY----KDVDKPPFSGMTGCGNTPIFKSGRGCGSC 73
Query: 77 YQVRCTVPEICTDEGVSVVVTDYGEGD--DTDFILSPRAYGRMAVADKSEELYSHGVVDV 134
++++CT PE C+ E V V +TD E F LS A+G MA ++L S G +++
Sbjct: 74 FEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELEL 133
Query: 135 EFERVPCRF-RGYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEI 180
+F RV C++ G V F V + S P YLA+ + YV+G DV+AV+I
Sbjct: 134 QFRRVKCKYPEGTKVTFHVEKGSN-PNYLALLVKYVNGDGDVVAVDI 179
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 15/183 (8%)
Query: 24 SFTNSRATYYGSPDGLGTPT--GACGFGGYGRNVNDANVAGVS-----RLWNNGAGCGTC 76
+ +RAT+YG P+G G P GACG +NVN +G++ ++ +G GCG+C
Sbjct: 18 KWLTARATWYGQPNGAGAPDNGGACGI----KNVNLPPYSGMTACGNVPIFKDGKGCGSC 73
Query: 77 YQVRCTVPEICTDEGVSVVVTD--YGEGDDTDFILSPRAYGRMAVADKSEELYSHGVVDV 134
Y+VRC C+ V+V +TD Y F LS +A+G +A ++++ G++DV
Sbjct: 74 YEVRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDV 133
Query: 135 EFERVPCRFR-GYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQVITYKLTSKQL 193
EF RV C++ G ++F + + P YLAV + YV+ D++ +EI ++ + +L
Sbjct: 134 EFRRVRCKYPAGQKIVFHIEKGCN-PNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKL 192
Query: 194 IFG 196
+G
Sbjct: 193 SWG 195
>pdb|3C0B|A Chain A, Crystal Structure Of The Conserved Archaeal Protein
Q6m145. Northeast Structural Genomics Consortium Target
Mrr63
pdb|3C0B|B Chain B, Crystal Structure Of The Conserved Archaeal Protein
Q6m145. Northeast Structural Genomics Consortium Target
Mrr63
pdb|3C0B|C Chain C, Crystal Structure Of The Conserved Archaeal Protein
Q6m145. Northeast Structural Genomics Consortium Target
Mrr63
pdb|3C0B|D Chain D, Crystal Structure Of The Conserved Archaeal Protein
Q6m145. Northeast Structural Genomics Consortium Target
Mrr63
pdb|3CET|A Chain A, Crystal Structure Of The Pantheonate Kinase-Like Protein
Q6m145 At The Resolution 1.8 A. Northeast Structural
Genomics Consortium Target Mrr63
pdb|3CET|B Chain B, Crystal Structure Of The Pantheonate Kinase-Like Protein
Q6m145 At The Resolution 1.8 A. Northeast Structural
Genomics Consortium Target Mrr63
Length = 334
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 73 CGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKS--EELYSHG 130
CGT V + E C ++ D G TD I P G++ VA+K+ E L +H
Sbjct: 115 CGTAKWVSKNIEENC-------ILVDXG-STTTDII--PIVEGKV-VAEKTDLERLXNHE 163
Query: 131 VVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVS 165
++ V R P G + FK + + +Y A++
Sbjct: 164 LLYVGTLRTPISHLGNTISFKGVDTNVSSEYFAIT 198
>pdb|1EG1|A Chain A, Endoglucanase I From Trichoderma Reesei
pdb|1EG1|C Chain C, Endoglucanase I From Trichoderma Reesei
Length = 371
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 133 DVEFERVPCRFRGYNVMFKVHENSRYPQYLAVSMLYVSGQNDV-LAVEIWQVITYKLTSK 191
DV+ +PC G + ++ EN QY Y SG D V+ W+ T TS
Sbjct: 131 DVDLSALPCGENGSLYLSQMDENGGANQYNTAGANYGSGYCDAQCPVQTWRNGTLN-TSH 189
Query: 192 QLIFGPSIACNAFVGAEGLSRLGA 215
Q CN EG SR A
Sbjct: 190 Q-----GFCCNEMDILEGNSRANA 208
>pdb|4ATN|A Chain A, Crystal Structure Of C2498 2'-O-Ribose Methyltransferase
Rlmm From Escherichia Coli
pdb|4B17|A Chain A, Crystal Structure Of C2498 2'-O-Ribose Methyltransferase
Rlmm From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 375
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 8 LLSVVMLLPALCYSQYSFTNSRATYYGSPDGLGTPTGA 45
++ V + P CY+ YS++N+ + +Y L P A
Sbjct: 147 VVHVFFIAPGXCYTGYSYSNNNSPFYMGIPRLKFPADA 184
>pdb|4AUK|A Chain A, Crystal Structure Of C2498 2'-O-Ribose Methyltransferase
Rlmm From Escherichia Coli
pdb|4AUK|B Chain B, Crystal Structure Of C2498 2'-O-Ribose Methyltransferase
Rlmm From Escherichia Coli
Length = 375
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 8 LLSVVMLLPALCYSQYSFTNSRATYYGSPDGLGTPTGA 45
++ V + P CY+ YS++N+ + +Y L P A
Sbjct: 147 VVHVFFIAPGXCYTGYSYSNNNSPFYMGIPRLKFPADA 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,422,577
Number of Sequences: 62578
Number of extensions: 332326
Number of successful extensions: 480
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 7
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)