Query 027391
Match_columns 224
No_of_seqs 177 out of 906
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 09:16:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03023 Expansin-like B1; Pro 100.0 6.4E-62 1.4E-66 425.0 23.6 209 6-215 7-217 (247)
2 PLN00050 expansin A; Provision 100.0 8.8E-57 1.9E-61 392.9 21.8 184 22-217 22-222 (247)
3 PLN00193 expansin-A; Provision 100.0 1.2E-56 2.6E-61 393.6 22.5 185 21-217 26-230 (256)
4 PLN03024 Putative EG45-like do 100.0 2.4E-29 5.2E-34 200.1 13.2 113 6-138 6-125 (125)
5 COG4305 Endoglucanase C-termin 99.9 6.8E-25 1.5E-29 181.7 16.3 167 20-213 25-198 (232)
6 smart00837 DPBB_1 Rare lipopro 99.9 1.4E-22 3E-27 152.0 6.6 70 60-136 1-87 (87)
7 PF01357 Pollen_allerg_1: Poll 99.8 9.1E-20 2E-24 135.3 8.6 71 148-219 1-72 (82)
8 PF03330 DPBB_1: Rare lipoprot 99.8 1.7E-19 3.8E-24 131.8 6.4 70 60-136 1-78 (78)
9 PLN00115 pollen allergen group 99.5 7.1E-14 1.5E-18 110.3 8.1 68 145-219 23-94 (118)
10 PF00967 Barwin: Barwin family 99.0 3.9E-10 8.5E-15 87.9 3.8 63 70-141 57-119 (119)
11 PF07249 Cerato-platanin: Cera 98.4 2.4E-06 5.1E-11 67.7 8.9 69 58-140 43-113 (119)
12 TIGR00413 rlpA rare lipoprotei 98.1 5E-05 1.1E-09 65.3 11.1 94 28-144 1-96 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.8 0.00016 3.5E-09 63.2 9.9 58 74-142 120-178 (233)
14 PRK10672 rare lipoprotein A; P 97.3 0.0032 7E-08 58.4 11.7 91 27-139 80-171 (361)
15 PF02015 Glyco_hydro_45: Glyco 91.8 0.17 3.6E-06 43.6 3.2 53 60-113 70-124 (201)
16 PF03404 Mo-co_dimer: Mo-co ox 66.8 8.5 0.00018 30.7 3.8 25 171-195 38-63 (131)
17 PF04149 DUF397: Domain of unk 45.7 62 0.0013 22.0 4.8 37 74-118 15-51 (56)
18 cd02110 SO_family_Moco_dimer S 45.6 44 0.00095 30.5 5.2 37 170-206 233-276 (317)
19 PF04620 FlaA: Flagellar filam 37.8 85 0.0018 27.4 5.6 52 146-206 108-159 (217)
20 TIGR02588 conserved hypothetic 36.7 80 0.0017 25.2 4.8 36 147-183 35-73 (122)
21 COG2372 CopC Uncharacterized p 31.3 72 0.0016 25.6 3.7 28 126-154 96-126 (127)
22 cd02113 bact_SoxC_Moco bacteri 28.0 1.1E+02 0.0024 28.2 5.0 24 170-193 235-258 (326)
23 KOG1779 40s ribosomal protein 27.0 62 0.0013 24.0 2.4 27 71-105 35-61 (84)
24 cd02111 eukary_SO_Moco molybdo 26.1 99 0.0022 28.9 4.3 26 168-193 271-296 (365)
25 PF03422 CBM_6: Carbohydrate b 24.6 1.5E+02 0.0032 22.2 4.4 48 134-183 34-82 (125)
26 cd02114 bact_SorA_Moco sulfite 23.8 68 0.0015 30.0 2.8 23 171-193 286-308 (367)
27 PRK10301 hypothetical protein; 23.2 1.3E+02 0.0027 23.7 3.8 27 126-153 95-124 (124)
28 PLN00177 sulfite oxidase; Prov 20.9 1.8E+02 0.0038 27.6 4.9 26 168-193 291-316 (393)
29 cd02112 eukary_NR_Moco molybdo 20.6 1.6E+02 0.0034 27.9 4.5 21 173-193 300-320 (386)
No 1
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=6.4e-62 Score=425.00 Aligned_cols=209 Identities=60% Similarity=1.084 Sum_probs=191.4
Q ss_pred HHHHHHHHHhhhhhccCCCeeeeEEEEeCCCCCCCCCCCccCCCCCCCCCCCceEEEeccccCCCCCCCceEEEEeCCCC
Q 027391 6 YYLLSVVMLLPALCYSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVSRLWNNGAGCGTCYQVRCTVPE 85 (224)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~g~g~~~GACGy~~~~~~~~~~~vaAls~~~~~G~~CG~C~eV~c~~~~ 85 (224)
++||+++++++....++ +|++++|||||++++.|+++|||||+++..+.++.++||+|+||++|++||+||||+|.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~-~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s~Lf~~G~~CGaCy~irC~~~~ 85 (247)
T PLN03023 7 CCFLCVIVLLPLLCKSQ-DFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVSRLYRNGTGCGACYQVRCKAPN 85 (247)
T ss_pred HHHHHHHHHhhhhhhcC-CcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeehhhhcCCchhcccEEeecCCCC
Confidence 56666677777755555 59999999999999999999999999988888899999999999999999999999999999
Q ss_pred cccCCcEEEEEecCCCCCCCCeeeCHHHHHhhhccccccccccCceeeeEEEEEecCCCCcceEEEEecCCCCCcEEEEE
Q 027391 86 ICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVS 165 (224)
Q Consensus 86 ~C~~~sv~V~VtD~Cp~~~~~~DLS~~AF~~la~~~~~~~~~~~G~i~I~wr~V~C~~~g~ni~~~v~~gS~~~~w~al~ 165 (224)
+|++++|+|+|||.||+++.|||||..||.+||+|+++++++++|+|+|+||||||.++|+||+|+|+++|.+|+||+++
T Consensus 86 ~C~~~~v~V~iTd~~~~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~vl 165 (247)
T PLN03023 86 LCSDDGVNVVVTDYGEGDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIV 165 (247)
T ss_pred ccCCCCeEEEEEeCCCCCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEEE
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999559999999
Q ss_pred EEEecCCCCcEEEEEEEcCccCcEEcccccCceeeeccccCCc-cce-EEee
Q 027391 166 MLYVSGQNDVLAVEIWQVITYKLTSKQLIFGPSIACNAFVGAE-GLS-RLGA 215 (224)
Q Consensus 166 v~n~~G~g~I~sVev~~~g~~~W~~l~r~~g~~W~~~~~~~~~-~~~-~~~~ 215 (224)
|.|++|.+||++||||+.++..|++|+|+||++|+++++|.|| +|+ |...
T Consensus 166 v~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~Gp~slrf~v~~ 217 (247)
T PLN03023 166 MLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKGPITLRFQVSG 217 (247)
T ss_pred EEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCCceeEEEEEEe
Confidence 9999999999999999977678999999999999999999887 555 4443
No 2
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=8.8e-57 Score=392.93 Aligned_cols=184 Identities=28% Similarity=0.573 Sum_probs=170.4
Q ss_pred CCCeeeeEEEEeCCCCCCCCCCCccCCCCCCCCCCCceEEEec-cccCCCCCCCceEEEEeCC-CCcccCCcEEEEEecC
Q 027391 22 QYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVS-RLWNNGAGCGTCYQVRCTV-PEICTDEGVSVVVTDY 99 (224)
Q Consensus 22 ~~~~~~g~aT~Yg~~~g~g~~~GACGy~~~~~~~~~~~vaAls-~~~~~G~~CG~C~eV~c~~-~~~C~~~sv~V~VtD~ 99 (224)
..+|..++|||||.+++.|+++|||||+++..++++.++||+| ++|++|+.||+||||+|.+ +.+|.+++|+|+|||+
T Consensus 22 ~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gsV~V~itd~ 101 (247)
T PLN00050 22 GSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATNF 101 (247)
T ss_pred CCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCcEEEEEecC
Confidence 4689999999999999999999999999988888999999999 9999999999999999965 3579989999999999
Q ss_pred CCC--------------CCCCeeeCHHHHHhhhccccccccccCceeeeEEEEEecCCCCcceEEEEecCCCCCcEEEEE
Q 027391 100 GEG--------------DDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVS 165 (224)
Q Consensus 100 Cp~--------------~~~~~DLS~~AF~~la~~~~~~~~~~~G~i~I~wr~V~C~~~g~ni~~~v~~gS~~~~w~al~ 165 (224)
||+ ++.|||||+.||.+||. ++.|+|+|+||||||+++| ||+|+|++++ ||++++
T Consensus 102 CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~-------~~aGii~V~yRRVpC~~~G-~i~f~v~g~s---y~~~vl 170 (247)
T PLN00050 102 CPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ-------YKAGIVPVQYRRVACRKSG-GIRFTINGHS---YFNLVL 170 (247)
T ss_pred CCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeeeeEEEEecCcCCC-CeEEEEcCCc---eeEEEE
Confidence 995 45899999999999994 5889999999999999999 9999998744 999999
Q ss_pred EEEecCCCCcEEEEEEEcCccCcEEcccccCceeeeccccCCccce-EEeecC
Q 027391 166 MLYVSGQNDVLAVEIWQVITYKLTSKQLIFGPSIACNAFVGAEGLS-RLGADE 217 (224)
Q Consensus 166 v~n~~G~g~I~sVev~~~g~~~W~~l~r~~g~~W~~~~~~~~~~~~-~~~~~~ 217 (224)
|.|++|.++|++|||+++++ +|++|+|+||++|++++.|.||+|+ |+.+++
T Consensus 171 v~nv~G~gdi~~V~ikg~~~-~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~ 222 (247)
T PLN00050 171 ITNVGGAGDIVAVSIKGSKS-NWQAMSRNWGQNWQSNSYLNGQALSFKVTTSD 222 (247)
T ss_pred EEEcCCCccEEEEEEecCCC-CeeECccccCceeEccCCCCCCcEEEEEEecC
Confidence 99999999999999999874 7999999999999999999999999 998755
No 3
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=1.2e-56 Score=393.59 Aligned_cols=185 Identities=28% Similarity=0.561 Sum_probs=170.2
Q ss_pred cCCCeeeeEEEEeCCCCCCCCCCCccCCCCCCCCCCCceEEEec-cccCCCCCCCceEEEEeC---CCCcccCC-cEEEE
Q 027391 21 SQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVS-RLWNNGAGCGTCYQVRCT---VPEICTDE-GVSVV 95 (224)
Q Consensus 21 ~~~~~~~g~aT~Yg~~~g~g~~~GACGy~~~~~~~~~~~vaAls-~~~~~G~~CG~C~eV~c~---~~~~C~~~-sv~V~ 95 (224)
...+|.+++||||+++|+.|+++|||||+++..++++.++||+| ++|++|+.||+||||+|. ++++|.++ +|+|+
T Consensus 26 ~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt 105 (256)
T PLN00193 26 TPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTIT 105 (256)
T ss_pred CCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEEE
Confidence 35589999999999999989999999999988888999999999 999999999999999994 56789665 89999
Q ss_pred EecCCCC--------------CCCCeeeCHHHHHhhhccccccccccCceeeeEEEEEecCCCCcceEEEEecCCCCCcE
Q 027391 96 VTDYGEG--------------DDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQY 161 (224)
Q Consensus 96 VtD~Cp~--------------~~~~~DLS~~AF~~la~~~~~~~~~~~G~i~I~wr~V~C~~~g~ni~~~v~~gS~~~~w 161 (224)
|||+||. ++.|||||+.||.+||. ++.|+|+|+||||||+++| ||+|+|++ ++||
T Consensus 106 ~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~-------~~~Giv~V~yrRVpC~~~G-~i~f~v~g---n~y~ 174 (256)
T PLN00193 106 ATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI-------YRGGIVPVLFQRVPCKKHG-GVRFTING---RDYF 174 (256)
T ss_pred EecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeEeEEEEEeccccCC-CcEEEEcC---CccE
Confidence 9999995 45899999999999994 5799999999999999999 99999984 6899
Q ss_pred EEEEEEEecCCCCcEEEEEEEcCccCcEEcccccCceeeeccccCCccce-EEeecC
Q 027391 162 LAVSMLYVSGQNDVLAVEIWQVITYKLTSKQLIFGPSIACNAFVGAEGLS-RLGADE 217 (224)
Q Consensus 162 ~al~v~n~~G~g~I~sVev~~~g~~~W~~l~r~~g~~W~~~~~~~~~~~~-~~~~~~ 217 (224)
++++|.|++|++||++||||++++ .|++|+|+||++|++++.|.||+|+ |+.+++
T Consensus 175 ~~vlv~nv~G~gdV~~v~Ik~~~~-~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~ 230 (256)
T PLN00193 175 ELVLISNVGGAGSIQSVSIKGSKT-GWMAMSRNWGANWQSNAYLDGQSLSFKVTTTD 230 (256)
T ss_pred EEEEEEEeCCCccEEEEEEecCCC-CeeECcccccceeEecCCCCCCCEEEEEEEcC
Confidence 999999999999999999999875 7999999999999999999999999 998854
No 4
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.96 E-value=2.4e-29 Score=200.09 Aligned_cols=113 Identities=30% Similarity=0.560 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhhhhccCCCeeeeEEEEeCCCCCCCCCCCccCCCCCCCCCCCceEEEec-cccCCCCCCCceEEEEeCCC
Q 027391 6 YYLLSVVMLLPALCYSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVS-RLWNNGAGCGTCYQVRCTVP 84 (224)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~g~g~~~GACGy~~~~~~~~~~~vaAls-~~~~~G~~CG~C~eV~c~~~ 84 (224)
++++.+++++.+... ..+|+||||++.+ .|||+ ++ .+++.++||+| ++|++|+.||+||||+|.++
T Consensus 6 ~~~~~~~~~~~~~~~----~~~G~AT~Y~~~~-----~gAC~-~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~ 72 (125)
T PLN03024 6 LIFSTVLVFLFSVSY----ATPGIATFYTSYT-----PSACY-RG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGP 72 (125)
T ss_pred HHHHHHHHHHhhhhc----ccceEEEEeCCCC-----Ccccc-CC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCC
Confidence 334444444544433 3469999998752 48994 43 34688999999 99999999999999999765
Q ss_pred -----CcccCCcEEEEEecCCC-CCCCCeeeCHHHHHhhhccccccccccCceeeeEEEE
Q 027391 85 -----EICTDEGVSVVVTDYGE-GDDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFER 138 (224)
Q Consensus 85 -----~~C~~~sv~V~VtD~Cp-~~~~~~DLS~~AF~~la~~~~~~~~~~~G~i~I~wr~ 138 (224)
.+|++++|+|+|+|+|| +|..|||||++||.+||++ +.|+|+|+|.+
T Consensus 73 ~~~~~~~c~gksV~V~VtD~CP~~C~~~~DLS~~AF~~iA~~-------~aG~v~V~y~~ 125 (125)
T PLN03024 73 RNAVPHPCTGKSVTVKIVDHCPSGCASTLDLSREAFAQIANP-------VAGIINIDYIP 125 (125)
T ss_pred CccccccccCCeEEEEEEcCCCCCCCCceEcCHHHHHHhcCc-------cCCEEEEEEeC
Confidence 37999999999999999 5889999999999999964 78999999974
No 5
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.93 E-value=6.8e-25 Score=181.74 Aligned_cols=167 Identities=22% Similarity=0.247 Sum_probs=141.2
Q ss_pred ccCCCeeeeEEEEeCCCCCCCCCCCccCCCCCCCCCCCceEEEec-cccCCC----CCCCceEEEEeCCCCcccCCcEEE
Q 027391 20 YSQYSFTNSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVS-RLWNNG----AGCGTCYQVRCTVPEICTDEGVSV 94 (224)
Q Consensus 20 ~~~~~~~~g~aT~Yg~~~g~g~~~GACGy~~~~~~~~~~~vaAls-~~~~~G----~~CG~C~eV~c~~~~~C~~~sv~V 94 (224)
.+-.+-+.|-|||-+.. ..+||=- +++.+..+.|.|++ ++-+-| +.-|+.++|. +| +++.+|
T Consensus 25 ~awd~~f~G~ATyTgsG----YsGGAfl---LDPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVq--GP----KG~TTV 91 (232)
T COG4305 25 AAWDDLFEGYATYTGSG----YSGGAFL---LDPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQ--GP----KGKTTV 91 (232)
T ss_pred cccccccceeEEEeccc----ccCceEE---ecCcCCcceeeecCHHHcccCCchhhhccceEEEE--CC----CCceEE
Confidence 33445578999997665 3667764 34455578899999 766654 5689999998 66 578899
Q ss_pred EEecCCCCC-CCCeeeCHHHHHhhhccccccccccCceeeeEEEEEecCCCCcceEEEEecCCCCCcEEEEEEEEecCCC
Q 027391 95 VVTDYGEGD-DTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFRGYNVMFKVHENSRYPQYLAVSMLYVSGQN 173 (224)
Q Consensus 95 ~VtD~Cp~~-~~~~DLS~~AF~~la~~~~~~~~~~~G~i~I~wr~V~C~~~g~ni~~~v~~gS~~~~w~al~v~n~~G~g 173 (224)
.|||+.|+. .+.|||||.||.+|+ ++.+|+|+|+||.|+-|..| |+.+++|||| +.||-++||+|+. -
T Consensus 92 YVTDlYPegasGaLDLSpNAFakIG-------nm~qGrIpvqWrvv~aPvtG-N~~YRiKeGS-s~WWAAIQVRnH~--y 160 (232)
T COG4305 92 YVTDLYPEGASGALDLSPNAFAKIG-------NMKQGRIPVQWRVVKAPVTG-NFTYRIKEGS-SRWWAAIQVRNHK--Y 160 (232)
T ss_pred EEecccccccccccccChHHHhhhc-------chhcCccceeEEEecccccc-cEEEEEecCC-ccceeeeeeeccc--C
Confidence 999999985 589999999999999 56899999999999999999 9999999999 8999999999998 9
Q ss_pred CcEEEEEEEcCccCcEEcccccCceeeeccccCCccce-EE
Q 027391 174 DVLAVEIWQVITYKLTSKQLIFGPSIACNAFVGAEGLS-RL 213 (224)
Q Consensus 174 ~I~sVev~~~g~~~W~~l~r~~g~~W~~~~~~~~~~~~-~~ 213 (224)
||.++|+.+++ .|..|....+|.+ +...|+.++|. |+
T Consensus 161 PV~KlE~~qdg--~WinlpK~dYNhF-VgT~LG~~pL~~Rm 198 (232)
T COG4305 161 PVMKLEYEQDG--KWINLPKMDYNHF-VGTNLGTGPLKVRM 198 (232)
T ss_pred ceEEEEEecCC--eEeecccccccee-eccccCCCceEEEE
Confidence 99999999888 6999999888665 56788899998 65
No 6
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.87 E-value=1.4e-22 Score=152.03 Aligned_cols=70 Identities=36% Similarity=0.779 Sum_probs=62.4
Q ss_pred EEEec-cccCCCCCCCceEEEEeC-CCCcccC-CcEEEEEecCCCC--------------CCCCeeeCHHHHHhhhcccc
Q 027391 60 VAGVS-RLWNNGAGCGTCYQVRCT-VPEICTD-EGVSVVVTDYGEG--------------DDTDFILSPRAYGRMAVADK 122 (224)
Q Consensus 60 vaAls-~~~~~G~~CG~C~eV~c~-~~~~C~~-~sv~V~VtD~Cp~--------------~~~~~DLS~~AF~~la~~~~ 122 (224)
+||+| +||++|++||+||||+|. ++++|.+ ++|+|+|||+||. ++.|||||+.||.+||+
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~--- 77 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQ--- 77 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhh---
Confidence 48999 999999999999999996 5668976 4999999999996 25899999999999995
Q ss_pred ccccccCceeeeEE
Q 027391 123 SEELYSHGVVDVEF 136 (224)
Q Consensus 123 ~~~~~~~G~i~I~w 136 (224)
++.|+|+|+|
T Consensus 78 ----~~~Gvi~v~y 87 (87)
T smart00837 78 ----YKAGIVPVKY 87 (87)
T ss_pred ----hcCCEEeeEC
Confidence 4889999987
No 7
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.81 E-value=9.1e-20 Score=135.26 Aligned_cols=71 Identities=30% Similarity=0.346 Sum_probs=59.4
Q ss_pred eEEEEecCCCCCcEEEEEEEEecCCCCcEEEEEEEcCccCcEEcccccCceeeeccccCCccce-EEeecCCc
Q 027391 148 VMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQVITYKLTSKQLIFGPSIACNAFVGAEGLS-RLGADEKG 219 (224)
Q Consensus 148 i~~~v~~gS~~~~w~al~v~n~~G~g~I~sVev~~~g~~~W~~l~r~~g~~W~~~~~~~~~~~~-~~~~~~~~ 219 (224)
|+|+|+++| +||||+++|.|++|.++|++|||++.++..|++|+|+||++|++++.+.+++|+ |+.+.|+|
T Consensus 1 v~f~V~~gS-~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~pls~Rvts~~~G 72 (82)
T PF01357_consen 1 VRFTVKGGS-NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGGPLSFRVTSGDSG 72 (82)
T ss_dssp EEEEE-TT--BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--SSEEEEEEETTTS
T ss_pred CEEEECCCC-CCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCCCEEEEEEEcCCC
Confidence 789999999 999999999999999999999999999888999999999999999877899999 99986655
No 8
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.79 E-value=1.7e-19 Score=131.80 Aligned_cols=70 Identities=37% Similarity=0.669 Sum_probs=58.0
Q ss_pred EEEec-cccCCCCCCCceEEEEeCC--CCc--ccC--CcEEEEEecCCCCC-CCCeeeCHHHHHhhhccccccccccCce
Q 027391 60 VAGVS-RLWNNGAGCGTCYQVRCTV--PEI--CTD--EGVSVVVTDYGEGD-DTDFILSPRAYGRMAVADKSEELYSHGV 131 (224)
Q Consensus 60 vaAls-~~~~~G~~CG~C~eV~c~~--~~~--C~~--~sv~V~VtD~Cp~~-~~~~DLS~~AF~~la~~~~~~~~~~~G~ 131 (224)
+||++ .+|++|.+||+||+++|.. +.. |.. ++|+|+|+|+||++ .+|||||+.||++|+.+ +.|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la~~-------~~G~ 73 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALADP-------DAGV 73 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTBST-------TCSS
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhCCC-------CceE
Confidence 58899 9999999999999999932 323 776 99999999999985 59999999999999954 7899
Q ss_pred eeeEE
Q 027391 132 VDVEF 136 (224)
Q Consensus 132 i~I~w 136 (224)
++|+|
T Consensus 74 i~V~w 78 (78)
T PF03330_consen 74 IPVEW 78 (78)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99998
No 9
>PLN00115 pollen allergen group 3; Provisional
Probab=99.50 E-value=7.1e-14 Score=110.27 Aligned_cols=68 Identities=18% Similarity=0.082 Sum_probs=58.7
Q ss_pred CcceEEEEecCCCCCcEEEEEEEEecCCCCcEEEEEEEcCccCcE-EcccccCceeeecc--ccCCccce-EEeecCCc
Q 027391 145 GYNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQVITYKLT-SKQLIFGPSIACNA--FVGAEGLS-RLGADEKG 219 (224)
Q Consensus 145 g~ni~~~v~~gS~~~~w~al~v~n~~G~g~I~sVev~~~g~~~W~-~l~r~~g~~W~~~~--~~~~~~~~-~~~~~~~~ 219 (224)
|++|+|+|+++| ||+||++++ | ++|.+||||+.++..|+ +|+|+||++|++++ +|.| ||+ |+.+++.+
T Consensus 23 g~~v~F~V~~gS-np~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~G~ 94 (118)
T PLN00115 23 ATEVTFKVGKGS-SSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKGGG 94 (118)
T ss_pred CCceEEEECCCC-CcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeCCC
Confidence 459999999999 899998876 3 56999999999877899 99999999999765 6777 999 99886443
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=98.98 E-value=3.9e-10 Score=87.93 Aligned_cols=63 Identities=27% Similarity=0.541 Sum_probs=45.7
Q ss_pred CCCCCceEEEEeCCCCcccCCcEEEEEecCCCCCCCCeeeCHHHHHhhhccccccccccCceeeeEEEEEec
Q 027391 70 GAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPC 141 (224)
Q Consensus 70 G~~CG~C~eV~c~~~~~C~~~sv~V~VtD~Cp~~~~~~DLS~~AF~~la~~~~~~~~~~~G~i~I~wr~V~C 141 (224)
-..||+|++|+.+. ++.+++|+|+|+|+.+ +|||++..|.+|-..| +....|.+.|+|++|+|
T Consensus 57 q~~CGkClrVTNt~----tga~~~~RIVDqCsnG--GLDld~~vF~~iDtdG---~G~~~Ghl~V~y~fV~C 119 (119)
T PF00967_consen 57 QDSCGKCLRVTNTA----TGAQVTVRIVDQCSNG--GLDLDPTVFNQIDTDG---QGYAQGHLIVDYEFVDC 119 (119)
T ss_dssp GGGTT-EEEEE-TT----T--EEEEEEEEE-SSS--SEES-SSSHHHH-SSS---HHHHHTEEEEEEEEE--
T ss_pred cccccceEEEEecC----CCcEEEEEEEEcCCCC--CcccChhHHhhhccCC---cccccceEEEEEEEEcC
Confidence 36899999999644 3679999999999866 9999999999997533 24568999999999998
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.38 E-value=2.4e-06 Score=67.70 Aligned_cols=69 Identities=23% Similarity=0.489 Sum_probs=49.4
Q ss_pred ceEEEec--cccCCCCCCCceEEEEeCCCCcccCCcEEEEEecCCCCCCCCeeeCHHHHHhhhccccccccccCceeeeE
Q 027391 58 ANVAGVS--RLWNNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMAVADKSEELYSHGVVDVE 135 (224)
Q Consensus 58 ~~vaAls--~~~~~G~~CG~C~eV~c~~~~~C~~~sv~V~VtD~Cp~~~~~~DLS~~AF~~la~~~~~~~~~~~G~i~I~ 135 (224)
.+|.+.. +-|+ ...||.|+|++.. +++|.|..+|.-+ ..|+|+.+||+.|.+. + ....|+|+++
T Consensus 43 p~IGg~~~V~gWn-S~~CGtC~~lty~------g~si~vlaID~a~---~gfnis~~A~n~LT~g-~---a~~lG~V~a~ 108 (119)
T PF07249_consen 43 PYIGGAPAVAGWN-SPNCGTCWKLTYN------GRSIYVLAIDHAG---GGFNISLDAMNDLTNG-Q---AVELGRVDAT 108 (119)
T ss_dssp TSEEEETT--STT--TTTT-EEEEEET------TEEEEEEEEEE-S---SSEEE-HHHHHHHHTS-----CCCC-EEE-E
T ss_pred CeeccccccccCC-CCCCCCeEEEEEC------CeEEEEEEEecCC---CcccchHHHHHHhcCC-c---ccceeEEEEE
Confidence 4677777 6785 5789999999962 5799999999843 4699999999999863 2 3467999999
Q ss_pred EEEEe
Q 027391 136 FERVP 140 (224)
Q Consensus 136 wr~V~ 140 (224)
|++|+
T Consensus 109 ~~qV~ 113 (119)
T PF07249_consen 109 YTQVD 113 (119)
T ss_dssp EEEE-
T ss_pred EEEcC
Confidence 99996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=98.07 E-value=5e-05 Score=65.32 Aligned_cols=94 Identities=29% Similarity=0.265 Sum_probs=68.5
Q ss_pred eEEEEeCCC-CCCCCCCCccCCCCCCCCCCCceEEEeccccCCCCCCCceEEEEeCCCCcccCCcEEEEEecCCCC-CCC
Q 027391 28 SRATYYGSP-DGLGTPTGACGFGGYGRNVNDANVAGVSRLWNNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEG-DDT 105 (224)
Q Consensus 28 g~aT~Yg~~-~g~g~~~GACGy~~~~~~~~~~~vaAls~~~~~G~~CG~C~eV~c~~~~~C~~~sv~V~VtD~Cp~-~~~ 105 (224)
|.|+|||.. .|. ..|.|-. ++ ...++||-..+ -.|..++|+... ++++|+|+|.|++|- ...
T Consensus 1 G~ASwYg~~f~G~---~TAnGe~-y~---~~~~tAAHktL-----PlgT~V~VtNl~----ngrsviVrVnDRGPf~~gR 64 (208)
T TIGR00413 1 GLASWYGPKFHGR---KTANGEV-YN---MKALTAAHKTL-----PFNTYVKVTNLH----NNRSVIVRINDRGPFSDDR 64 (208)
T ss_pred CEEeEeCCCCCCC---cCCCCee-cC---CCccccccccC-----CCCCEEEEEECC----CCCEEEEEEeCCCCCCCCC
Confidence 679999875 221 1444421 11 12355554433 578999999755 378999999999997 457
Q ss_pred CeeeCHHHHHhhhccccccccccCceeeeEEEEEecCCC
Q 027391 106 DFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCRFR 144 (224)
Q Consensus 106 ~~DLS~~AF~~la~~~~~~~~~~~G~i~I~wr~V~C~~~ 144 (224)
-+|||++|+.+|+ ....|+.+|+.+.+.....
T Consensus 65 iIDLS~aAA~~Lg-------~~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 65 IIDLSHAAAREIG-------LISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred EEECCHHHHHHcC-------CCcCceEEEEEEEEecCCC
Confidence 8999999999999 5589999999999987654
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.82 E-value=0.00016 Score=63.16 Aligned_cols=58 Identities=22% Similarity=0.197 Sum_probs=50.2
Q ss_pred CceEEEEeCCCCcccCCcEEEEEecCCCC-CCCCeeeCHHHHHhhhccccccccccCceeeeEEEEEecC
Q 027391 74 GTCYQVRCTVPEICTDEGVSVVVTDYGEG-DDTDFILSPRAYGRMAVADKSEELYSHGVVDVEFERVPCR 142 (224)
Q Consensus 74 G~C~eV~c~~~~~C~~~sv~V~VtD~Cp~-~~~~~DLS~~AF~~la~~~~~~~~~~~G~i~I~wr~V~C~ 142 (224)
|...+|+..+ ++++|+|+|.|++|- ..-.||||..|+++|+ ....|+.+|+.+.+.+.
T Consensus 120 ~t~v~VtNl~----NgrsvvVRINDRGPf~~gRiIDlS~aAA~~l~-------~~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 120 PTYVRVTNLD----NGRSVVVRINDRGPFVSGRIIDLSKAAADKLG-------MIRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCEEEEEEcc----CCcEEEEEEeCCCCCCCCcEeEcCHHHHHHhC-------CccCceEEEEEEEeccc
Confidence 5778999766 378999999999997 4578999999999999 45789999999999866
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.31 E-value=0.0032 Score=58.41 Aligned_cols=91 Identities=20% Similarity=0.147 Sum_probs=60.6
Q ss_pred eeEEEEeCCCCCCCCCCCccCCCCCCCCCCCceEEEeccccCCCCCCCceEEEEeCCCCcccCCcEEEEEecCCCC-CCC
Q 027391 27 NSRATYYGSPDGLGTPTGACGFGGYGRNVNDANVAGVSRLWNNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEG-DDT 105 (224)
Q Consensus 27 ~g~aT~Yg~~~g~g~~~GACGy~~~~~~~~~~~vaAls~~~~~G~~CG~C~eV~c~~~~~C~~~sv~V~VtD~Cp~-~~~ 105 (224)
.|.|+|||...... -.|-|-. ++ ...++||-..| --|..++|+... ++++|+|+|.|++|- ...
T Consensus 80 ~G~ASwYg~~f~G~--~TA~Ge~-~~---~~~~tAAH~tL-----Plps~vrVtNl~----ngrsvvVrVnDRGP~~~gR 144 (361)
T PRK10672 80 AGLAAIYDAEAGSN--LTASGER-FD---PNALTAAHPTL-----PIPSYVRVTNLA----NGRMIVVRINDRGPYGPGR 144 (361)
T ss_pred EEEEEEeCCccCCC--cCcCcee-ec---CCcCeeeccCC-----CCCCEEEEEECC----CCcEEEEEEeCCCCCCCCC
Confidence 68888888652110 1222211 11 12455554432 357899999765 478999999999997 457
Q ss_pred CeeeCHHHHHhhhccccccccccCceeeeEEEEE
Q 027391 106 DFILSPRAYGRMAVADKSEELYSHGVVDVEFERV 139 (224)
Q Consensus 106 ~~DLS~~AF~~la~~~~~~~~~~~G~i~I~wr~V 139 (224)
-||||..|+.+|+- ...+.|.|+.-.|
T Consensus 145 iiDLS~aAA~~Lg~-------~~~~~V~ve~i~v 171 (361)
T PRK10672 145 VIDLSRAAADRLNT-------SNNTKVRIDPIIV 171 (361)
T ss_pred eeEcCHHHHHHhCC-------CCCceEEEEEEee
Confidence 89999999999994 3456677777666
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=91.80 E-value=0.17 Score=43.62 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=31.8
Q ss_pred EEEec-cccCCCCCCCceEEEEeCCCCcccCCcEEEEEecCCCC-CCCCeeeCHHH
Q 027391 60 VAGVS-RLWNNGAGCGTCYQVRCTVPEICTDEGVSVVVTDYGEG-DDTDFILSPRA 113 (224)
Q Consensus 60 vaAls-~~~~~G~~CG~C~eV~c~~~~~C~~~sv~V~VtD~Cp~-~~~~~DLS~~A 113 (224)
.||.+ .-..+...|++|||++=++.+ -.+++.+|+|++.--. ..+||||.-.-
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~-l~GKkmiVQ~tNtG~dlg~n~FDl~iPG 124 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGP-LKGKKMIVQVTNTGGDLGSNQFDLAIPG 124 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SST-TTT-EEEEEEEEE-TTTTTTEEEEE-TT
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCC-cCCCEeEEEecccCCCCCCCeEEEEeCC
Confidence 34444 322333679999999976522 2467899999988754 56899987543
No 16
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=66.75 E-value=8.5 Score=30.72 Aligned_cols=25 Identities=16% Similarity=-0.027 Sum_probs=18.7
Q ss_pred CCC-CcEEEEEEEcCccCcEEccccc
Q 027391 171 GQN-DVLAVEIWQVITYKLTSKQLIF 195 (224)
Q Consensus 171 G~g-~I~sVev~~~g~~~W~~l~r~~ 195 (224)
|.+ .|.+|||..+++.+|++.+...
T Consensus 38 g~g~~I~rVEVS~DgG~tW~~A~l~~ 63 (131)
T PF03404_consen 38 GGGRGIARVEVSTDGGKTWQEATLDG 63 (131)
T ss_dssp STT--EEEEEEESSTTSSEEE-EEES
T ss_pred CCCcceEEEEEEeCCCCCcEEeEecc
Confidence 335 8999999999988999776643
No 17
>PF04149 DUF397: Domain of unknown function (DUF397); InterPro: IPR007278 The function of this family is unknown. It has been suggested that some members of this family are regulators of transcription.
Probab=45.69 E-value=62 Score=22.00 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=27.8
Q ss_pred CceEEEEeCCCCcccCCcEEEEEecCCCCCCCCeeeCHHHHHhhh
Q 027391 74 GTCYQVRCTVPEICTDEGVSVVVTDYGEGDDTDFILSPRAYGRMA 118 (224)
Q Consensus 74 G~C~eV~c~~~~~C~~~sv~V~VtD~Cp~~~~~~DLS~~AF~~la 118 (224)
|.|+||.-. +. .|-|.|.=......|.+++.+|..+-
T Consensus 15 ~~CVEva~~------~~--~v~vRDSk~p~~~~L~~t~~eW~aFl 51 (56)
T PF04149_consen 15 GNCVEVARL------PG--GVAVRDSKDPDGPVLTFTPAEWAAFL 51 (56)
T ss_pred CCcEEEEee------cc--eEEEecCCCCCCCEEEeCHHHHHHHH
Confidence 889999742 22 37788864446789999999999874
No 18
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=45.57 E-value=44 Score=30.51 Aligned_cols=37 Identities=14% Similarity=-0.110 Sum_probs=26.1
Q ss_pred cCCCCcEEEEEEEcCccCcEEcccccCc-------eeeeccccC
Q 027391 170 SGQNDVLAVEIWQVITYKLTSKQLIFGP-------SIACNAFVG 206 (224)
Q Consensus 170 ~G~g~I~sVev~~~g~~~W~~l~r~~g~-------~W~~~~~~~ 206 (224)
.|...|++|||+.+++.+|++..-.... .|++.-.+.
T Consensus 233 ~g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~ 276 (317)
T cd02110 233 SGGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLP 276 (317)
T ss_pred cCCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcC
Confidence 3446799999999998899987664322 566665444
No 19
>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space
Probab=37.78 E-value=85 Score=27.36 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=38.0
Q ss_pred cceEEEEecCCCCCcEEEEEEEEecCCCCcEEEEEEEcCccCcEEcccccCceeeeccccC
Q 027391 146 YNVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQVITYKLTSKQLIFGPSIACNAFVG 206 (224)
Q Consensus 146 ~ni~~~v~~gS~~~~w~al~v~n~~G~g~I~sVev~~~g~~~W~~l~r~~g~~W~~~~~~~ 206 (224)
|.|.+.|-+-. ++++|.+++++.. |.+..+.+=.-+-..|+.|+ |.++..+.
T Consensus 108 k~I~vWV~G~n-~~h~L~v~lrD~~--G~~~~l~~G~L~f~GWK~L~------~~iP~~ip 159 (217)
T PF04620_consen 108 KSISVWVYGDN-YPHWLEVLLRDAK--GEVHQLPLGSLNFDGWKNLT------VNIPPYIP 159 (217)
T ss_pred EEEEEEEECCC-CCceEEEEEEcCC--CCEEEEEeeeecCCceeEEE------EECCCCCC
Confidence 57888886655 8999999999888 56666666444445799996 55655554
No 20
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=36.73 E-value=80 Score=25.22 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=26.6
Q ss_pred ceEEEEecCC---CCCcEEEEEEEEecCCCCcEEEEEEEc
Q 027391 147 NVMFKVHENS---RYPQYLAVSMLYVSGQNDVLAVEIWQV 183 (224)
Q Consensus 147 ni~~~v~~gS---~~~~w~al~v~n~~G~g~I~sVev~~~ 183 (224)
.+.+.+++-. ..+||..+.|.|.+| ...++|+|++.
T Consensus 35 ~l~v~~~~~~r~~~gqyyVpF~V~N~gg-~TAasV~V~ge 73 (122)
T TIGR02588 35 VLEVAPAEVERMQTGQYYVPFAIHNLGG-TTAAAVNIRGE 73 (122)
T ss_pred eEEEeehheeEEeCCEEEEEEEEEeCCC-cEEEEEEEEEE
Confidence 5555554322 146999999999987 78899999875
No 21
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=31.27 E-value=72 Score=25.64 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=22.6
Q ss_pred cccCceeeeEEEEEecCC---CCcceEEEEec
Q 027391 126 LYSHGVVDVEFERVPCRF---RGYNVMFKVHE 154 (224)
Q Consensus 126 ~~~~G~i~I~wr~V~C~~---~g~ni~~~v~~ 154 (224)
.+..|..-++||.|+=+- .| .|.|.|+.
T Consensus 96 ~L~aG~Y~v~WrvvS~DGH~v~G-~~sFsV~~ 126 (127)
T COG2372 96 PLKAGVYTVDWRVVSSDGHVVKG-SISFSVGA 126 (127)
T ss_pred cCCCCcEEEEEEEEecCCcEecc-EEEEEecC
Confidence 688999999999998763 56 77777753
No 22
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=28.03 E-value=1.1e+02 Score=28.15 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=19.5
Q ss_pred cCCCCcEEEEEEEcCccCcEEccc
Q 027391 170 SGQNDVLAVEIWQVITYKLTSKQL 193 (224)
Q Consensus 170 ~G~g~I~sVev~~~g~~~W~~l~r 193 (224)
.|.+.|.+|||+.+++.+|+..+.
T Consensus 235 sG~~~I~rVEVS~DgG~tW~~A~l 258 (326)
T cd02113 235 SGRGRIRRVDVSFDGGRTWQDARL 258 (326)
T ss_pred CCCCCEEEEEEEcCCCCCceECcc
Confidence 344679999999999889997655
No 23
>KOG1779 consensus 40s ribosomal protein S27 [Translation, ribosomal structure and biogenesis]
Probab=26.97 E-value=62 Score=24.03 Aligned_cols=27 Identities=30% Similarity=0.593 Sum_probs=18.2
Q ss_pred CCCCceEEEEeCCCCcccCCcEEEEEecCCCCCCC
Q 027391 71 AGCGTCYQVRCTVPEICTDEGVSVVVTDYGEGDDT 105 (224)
Q Consensus 71 ~~CG~C~eV~c~~~~~C~~~sv~V~VtD~Cp~~~~ 105 (224)
..|+.|++|++.- .-..+|+| |++|..
T Consensus 35 VkC~gc~~iT~vf-----SHaqtvVv---c~~c~~ 61 (84)
T KOG1779|consen 35 VKCPGCFKITTVF-----SHAQTVVV---CEGCST 61 (84)
T ss_pred EEcCCceEEEEEe-----ecCceEEE---cCCCce
Confidence 4699999999854 34555665 665543
No 24
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=26.09 E-value=99 Score=28.91 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=20.7
Q ss_pred EecCCCCcEEEEEEEcCccCcEEccc
Q 027391 168 YVSGQNDVLAVEIWQVITYKLTSKQL 193 (224)
Q Consensus 168 n~~G~g~I~sVev~~~g~~~W~~l~r 193 (224)
..+|...|++|||..+++.+|+....
T Consensus 271 ~sgg~~~I~rVEVS~DgG~tW~~A~l 296 (365)
T cd02111 271 WSGGGRKIVRVDVSLDGGRTWKVAEL 296 (365)
T ss_pred ECCCCCcEEEEEEECCCCCcceeCCc
Confidence 44554589999999999889997654
No 25
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=24.56 E-value=1.5e+02 Score=22.23 Aligned_cols=48 Identities=8% Similarity=0.039 Sum_probs=24.3
Q ss_pred eEEEEEecCCCCc-ceEEEEecCCCCCcEEEEEEEEecCCCCcEEEEEEEc
Q 027391 134 VEFERVPCRFRGY-NVMFKVHENSRYPQYLAVSMLYVSGQNDVLAVEIWQV 183 (224)
Q Consensus 134 I~wr~V~C~~~g~-ni~~~v~~gS~~~~w~al~v~n~~G~g~I~sVev~~~ 183 (224)
+.|+.|.-+..+. .|.+++..+. .+.-+.|.+-... ...+..+++...
T Consensus 34 ~~~~~Vd~~~~g~y~~~~~~a~~~-~~~~~~l~id~~~-g~~~~~~~~~~t 82 (125)
T PF03422_consen 34 IEYNNVDVPEAGTYTLTIRYANGG-GGGTIELRIDGPD-GTLIGTVSLPPT 82 (125)
T ss_dssp EEEEEEEESSSEEEEEEEEEEESS-SSEEEEEEETTTT-SEEEEEEEEE-E
T ss_pred EEEEEEeeCCCceEEEEEEEECCC-CCcEEEEEECCCC-CcEEEEEEEcCC
Confidence 6777777666662 3666665544 3323333331111 245677777443
No 26
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=23.80 E-value=68 Score=30.00 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=19.0
Q ss_pred CCCCcEEEEEEEcCccCcEEccc
Q 027391 171 GQNDVLAVEIWQVITYKLTSKQL 193 (224)
Q Consensus 171 G~g~I~sVev~~~g~~~W~~l~r 193 (224)
|...|++|||..+++.+|+..+-
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l 308 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATL 308 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEe
Confidence 44689999999999889996653
No 27
>PRK10301 hypothetical protein; Provisional
Probab=23.21 E-value=1.3e+02 Score=23.73 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=19.4
Q ss_pred cccCceeeeEEEEEecCC---CCcceEEEEe
Q 027391 126 LYSHGVVDVEFERVPCRF---RGYNVMFKVH 153 (224)
Q Consensus 126 ~~~~G~i~I~wr~V~C~~---~g~ni~~~v~ 153 (224)
.+..|.+.|+||-|+=+- .| .+.|.|+
T Consensus 95 ~L~~G~YtV~Wrvvs~DGH~~~G-~~~F~V~ 124 (124)
T PRK10301 95 SLKPGTYTVDWHVVSVDGHKTKG-HYTFSVK 124 (124)
T ss_pred CCCCccEEEEEEEEecCCCccCC-eEEEEEC
Confidence 357899999999998652 34 6666553
No 28
>PLN00177 sulfite oxidase; Provisional
Probab=20.94 E-value=1.8e+02 Score=27.62 Aligned_cols=26 Identities=12% Similarity=-0.036 Sum_probs=20.2
Q ss_pred EecCCCCcEEEEEEEcCccCcEEccc
Q 027391 168 YVSGQNDVLAVEIWQVITYKLTSKQL 193 (224)
Q Consensus 168 n~~G~g~I~sVev~~~g~~~W~~l~r 193 (224)
..+|...|++|||..+++.+|+..+.
T Consensus 291 wsggg~~I~rVEVS~DgG~tW~~A~l 316 (393)
T PLN00177 291 LSGGGRGIERVDISVDGGKTWVEASR 316 (393)
T ss_pred ECCCCccEEEEEEEcCCCCCceeeee
Confidence 44444479999999999889996654
No 29
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=20.63 E-value=1.6e+02 Score=27.86 Aligned_cols=21 Identities=14% Similarity=-0.048 Sum_probs=18.1
Q ss_pred CCcEEEEEEEcCccCcEEccc
Q 027391 173 NDVLAVEIWQVITYKLTSKQL 193 (224)
Q Consensus 173 g~I~sVev~~~g~~~W~~l~r 193 (224)
..|++|||..+++.+|+....
T Consensus 300 ~~I~rVeVS~DgG~tW~~A~L 320 (386)
T cd02112 300 RRVTRVEVSLDDGKSWKLASI 320 (386)
T ss_pred CcEEEEEEEcCCCCCceeCCC
Confidence 479999999999889997655
Done!