Query 027392
Match_columns 224
No_of_seqs 270 out of 2981
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 09:17:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 6.9E-35 1.5E-39 236.5 14.6 159 2-163 21-235 (240)
2 COG4555 NatA ABC-type Na+ tran 100.0 2.1E-33 4.6E-38 225.5 12.3 154 3-159 22-228 (245)
3 COG1120 FepC ABC-type cobalami 100.0 4.7E-33 1E-37 234.1 14.4 158 3-165 22-238 (258)
4 COG1125 OpuBA ABC-type proline 100.0 1.8E-31 3.9E-36 221.2 15.2 158 3-163 21-235 (309)
5 COG3842 PotA ABC-type spermidi 100.0 8.5E-32 1.8E-36 235.4 13.5 164 2-168 24-242 (352)
6 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.4E-31 3.1E-36 224.2 12.9 145 3-153 24-227 (254)
7 COG3839 MalK ABC-type sugar tr 100.0 3.6E-31 7.8E-36 230.4 13.9 161 3-166 23-237 (338)
8 COG1135 AbcC ABC-type metal io 100.0 4.6E-31 1E-35 224.0 12.4 159 2-163 25-241 (339)
9 COG1116 TauB ABC-type nitrate/ 100.0 1.1E-30 2.4E-35 216.6 13.1 130 4-134 24-203 (248)
10 COG1131 CcmA ABC-type multidru 100.0 1.5E-30 3.3E-35 224.9 14.4 147 3-152 25-225 (293)
11 COG1127 Ttg2A ABC-type transpo 100.0 2.6E-30 5.6E-35 212.8 14.7 155 4-161 29-243 (263)
12 PRK13537 nodulation ABC transp 100.0 2.5E-30 5.5E-35 224.9 15.0 147 3-152 27-226 (306)
13 COG1124 DppF ABC-type dipeptid 100.0 2.6E-30 5.6E-35 213.3 13.7 150 2-154 26-232 (252)
14 COG1118 CysA ABC-type sulfate/ 100.0 1.5E-30 3.3E-35 220.5 12.6 158 3-163 22-237 (345)
15 COG4152 ABC-type uncharacteriz 100.0 1.7E-30 3.6E-35 214.3 10.3 148 3-153 22-219 (300)
16 COG1122 CbiO ABC-type cobalt t 100.0 8.2E-30 1.8E-34 213.3 12.8 149 3-154 24-229 (235)
17 PRK11650 ugpC glycerol-3-phosp 100.0 1.6E-29 3.4E-34 224.0 15.2 157 4-163 25-234 (356)
18 TIGR01188 drrA daunorubicin re 100.0 1.6E-29 3.4E-34 219.5 14.8 147 3-152 13-212 (302)
19 PRK11432 fbpC ferric transport 100.0 1.6E-29 3.5E-34 223.4 14.9 157 4-163 27-236 (351)
20 PRK13536 nodulation factor exp 100.0 1.8E-29 3.8E-34 222.4 14.9 148 3-153 61-261 (340)
21 TIGR02314 ABC_MetN D-methionin 100.0 2.4E-29 5.1E-34 221.6 14.9 149 4-155 26-232 (343)
22 TIGR03258 PhnT 2-aminoethylpho 100.0 2.2E-29 4.7E-34 223.4 14.6 155 4-161 26-236 (362)
23 COG1117 PstB ABC-type phosphat 100.0 1.3E-29 2.9E-34 205.3 11.6 157 3-163 27-247 (253)
24 TIGR03265 PhnT2 putative 2-ami 100.0 2.8E-29 6E-34 222.2 14.7 157 4-163 25-234 (353)
25 PRK10851 sulfate/thiosulfate t 100.0 9.4E-29 2E-33 218.8 15.7 158 3-163 22-236 (353)
26 PRK11000 maltose/maltodextrin 100.0 8.6E-29 1.9E-33 220.3 15.5 157 4-163 24-233 (369)
27 PRK09452 potA putrescine/sperm 100.0 8.4E-29 1.8E-33 220.5 15.3 157 4-163 35-244 (375)
28 TIGR01186 proV glycine betaine 100.0 8.9E-29 1.9E-33 219.3 15.4 150 3-155 13-221 (363)
29 TIGR01288 nodI ATP-binding ABC 100.0 9.4E-29 2E-33 214.7 15.1 147 3-152 24-223 (303)
30 cd03216 ABC_Carb_Monos_I This 100.0 3.3E-29 7.1E-34 199.2 10.8 131 4-143 21-161 (163)
31 COG3638 ABC-type phosphate/pho 100.0 6.3E-29 1.4E-33 204.1 12.5 147 3-152 24-236 (258)
32 COG1136 SalX ABC-type antimicr 100.0 7.9E-29 1.7E-33 204.8 13.0 133 4-139 26-218 (226)
33 PRK11607 potG putrescine trans 100.0 1.4E-28 3.1E-33 219.2 15.0 157 4-163 40-249 (377)
34 PRK11153 metN DL-methionine tr 100.0 1.6E-28 3.6E-33 216.6 15.1 149 3-154 25-231 (343)
35 cd03261 ABC_Org_Solvent_Resist 100.0 2.7E-28 5.8E-33 204.3 15.0 145 4-151 21-224 (235)
36 cd03265 ABC_DrrA DrrA is the A 100.0 3.2E-28 6.9E-33 201.9 14.8 143 4-149 21-217 (220)
37 COG3840 ThiQ ABC-type thiamine 100.0 4.2E-28 9.2E-33 192.3 14.2 147 5-154 21-220 (231)
38 cd03259 ABC_Carb_Solutes_like 100.0 2.6E-28 5.6E-33 201.5 13.6 138 4-144 21-211 (213)
39 cd03222 ABC_RNaseL_inhibitor T 100.0 2.4E-28 5.2E-33 196.7 12.8 120 5-139 21-148 (177)
40 PRK09536 btuD corrinoid ABC tr 100.0 2.3E-28 5E-33 219.2 14.1 147 3-152 23-227 (402)
41 COG4175 ProV ABC-type proline/ 100.0 1.9E-28 4.1E-33 208.5 12.7 158 3-163 48-264 (386)
42 TIGR03522 GldA_ABC_ATP gliding 100.0 3.8E-28 8.2E-33 210.8 14.8 145 4-152 23-220 (301)
43 cd03226 ABC_cobalt_CbiO_domain 100.0 2.8E-28 6.1E-33 200.2 13.3 130 4-134 21-198 (205)
44 TIGR00960 3a0501s02 Type II (G 100.0 2.1E-28 4.5E-33 202.4 12.5 130 4-134 24-210 (216)
45 cd03296 ABC_CysA_sulfate_impor 100.0 4.1E-28 8.9E-33 203.7 14.5 147 3-152 22-225 (239)
46 TIGR03415 ABC_choXWV_ATP choli 100.0 5.1E-28 1.1E-32 215.5 15.7 150 3-155 44-256 (382)
47 PRK11144 modC molybdate transp 100.0 4E-28 8.6E-33 214.9 14.8 157 4-163 19-228 (352)
48 cd03294 ABC_Pro_Gly_Bertaine T 100.0 6.1E-28 1.3E-32 206.3 15.2 147 4-153 45-250 (269)
49 cd03256 ABC_PhnC_transporter A 100.0 8E-28 1.7E-32 201.8 15.4 145 4-151 22-232 (241)
50 TIGR02315 ABC_phnC phosphonate 100.0 8.1E-28 1.7E-32 202.1 15.4 145 4-151 23-233 (243)
51 PRK10070 glycine betaine trans 100.0 6E-28 1.3E-32 216.4 15.4 148 4-154 49-255 (400)
52 cd03218 ABC_YhbG The ABC trans 100.0 7.4E-28 1.6E-32 201.0 14.9 145 4-151 21-220 (232)
53 cd03301 ABC_MalK_N The N-termi 100.0 5.7E-28 1.2E-32 199.3 14.1 139 4-145 21-212 (213)
54 cd03293 ABC_NrtD_SsuB_transpor 100.0 5.8E-28 1.3E-32 200.4 13.9 140 4-145 25-215 (220)
55 cd03230 ABC_DR_subfamily_A Thi 100.0 5.3E-28 1.1E-32 193.8 13.1 129 4-134 21-167 (173)
56 cd03258 ABC_MetN_methionine_tr 100.0 9.2E-28 2E-32 200.7 14.8 145 4-151 26-228 (233)
57 PRK13651 cobalt transporter AT 100.0 7.3E-28 1.6E-32 209.3 14.7 147 4-153 28-254 (305)
58 PRK13643 cbiO cobalt transport 100.0 7.8E-28 1.7E-32 207.6 14.6 147 3-153 26-233 (288)
59 cd03219 ABC_Mj1267_LivG_branch 100.0 9.1E-28 2E-32 201.0 14.4 145 4-151 21-230 (236)
60 cd03215 ABC_Carb_Monos_II This 100.0 5.7E-28 1.2E-32 195.1 12.7 130 4-134 21-176 (182)
61 cd03268 ABC_BcrA_bacitracin_re 100.0 7.7E-28 1.7E-32 197.9 13.6 137 5-144 22-206 (208)
62 COG0411 LivG ABC-type branched 100.0 1.1E-28 2.3E-33 203.8 8.4 149 3-154 24-240 (250)
63 PRK11264 putative amino-acid A 100.0 1.4E-27 3E-32 201.7 15.2 147 3-152 23-232 (250)
64 cd03266 ABC_NatA_sodium_export 100.0 1E-27 2.2E-32 198.4 14.1 138 4-144 26-216 (218)
65 cd03229 ABC_Class3 This class 100.0 5.2E-28 1.1E-32 194.7 12.0 130 4-134 21-173 (178)
66 cd03214 ABC_Iron-Siderophores_ 100.0 4.8E-28 1E-32 195.2 11.8 136 4-143 20-177 (180)
67 cd03269 ABC_putative_ATPase Th 100.0 1.2E-27 2.7E-32 197.0 14.2 138 4-144 21-208 (210)
68 TIGR01184 ntrCD nitrate transp 100.0 1.3E-27 2.8E-32 199.9 14.3 142 3-147 5-198 (230)
69 PRK13641 cbiO cobalt transport 100.0 1.2E-27 2.6E-32 206.3 14.4 146 4-152 28-233 (287)
70 PRK13647 cbiO cobalt transport 100.0 1.3E-27 2.8E-32 204.9 14.3 144 3-150 25-224 (274)
71 PRK13637 cbiO cobalt transport 100.0 1.6E-27 3.5E-32 205.6 15.0 147 4-153 28-234 (287)
72 TIGR02673 FtsE cell division A 100.0 1.2E-27 2.6E-32 197.5 13.5 130 4-134 23-209 (214)
73 cd03246 ABCC_Protease_Secretio 100.0 9.3E-28 2E-32 192.4 12.4 127 4-134 23-167 (173)
74 cd03224 ABC_TM1139_LivF_branch 100.0 1.8E-27 4E-32 197.3 14.4 144 4-150 21-218 (222)
75 COG1123 ATPase components of v 100.0 1.1E-27 2.3E-32 218.2 14.0 158 2-162 310-528 (539)
76 PRK11247 ssuB aliphatic sulfon 100.0 2E-27 4.4E-32 201.9 14.8 140 4-146 33-216 (257)
77 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1E-27 2.2E-32 198.4 12.6 129 4-134 25-212 (218)
78 PRK14250 phosphate ABC transpo 100.0 2.7E-27 5.9E-32 199.1 15.2 147 4-153 24-221 (241)
79 TIGR02142 modC_ABC molybdenum 100.0 2E-27 4.4E-32 210.5 15.1 149 4-155 18-223 (354)
80 PRK09493 glnQ glutamine ABC tr 100.0 2.8E-27 6E-32 198.7 15.2 146 4-152 22-224 (240)
81 cd03263 ABC_subfamily_A The AB 100.0 2.1E-27 4.5E-32 196.8 14.2 142 4-149 23-217 (220)
82 PRK11614 livF leucine/isoleuci 100.0 1.9E-27 4.1E-32 199.4 14.0 147 3-152 25-225 (237)
83 PRK11248 tauB taurine transpor 100.0 2.8E-27 6.1E-32 200.8 15.2 140 4-145 22-212 (255)
84 PRK11300 livG leucine/isoleuci 100.0 2.4E-27 5.1E-32 200.7 14.7 146 4-152 26-242 (255)
85 PRK11308 dppF dipeptide transp 99.9 1.5E-27 3.2E-32 209.2 13.8 150 3-155 35-246 (327)
86 TIGR03410 urea_trans_UrtE urea 99.9 3.1E-27 6.8E-32 197.1 14.8 145 4-151 21-219 (230)
87 COG0410 LivF ABC-type branched 99.9 2.1E-27 4.6E-32 194.6 13.5 149 3-154 23-227 (237)
88 cd03213 ABCG_EPDR ABCG transpo 99.9 3.4E-27 7.3E-32 192.6 14.6 138 4-144 30-192 (194)
89 cd03235 ABC_Metallic_Cations A 99.9 1.9E-27 4.1E-32 196.3 13.2 130 4-134 20-204 (213)
90 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 4E-27 8.6E-32 197.4 15.3 146 4-153 22-221 (236)
91 COG1137 YhbG ABC-type (unclass 99.9 1.1E-28 2.3E-33 198.3 5.5 150 2-154 23-229 (243)
92 PRK11831 putative ABC transpor 99.9 3.7E-27 8.1E-32 201.4 15.4 147 3-152 27-232 (269)
93 TIGR03740 galliderm_ABC gallid 99.9 3.4E-27 7.4E-32 196.1 14.8 142 5-149 22-209 (223)
94 PRK15079 oligopeptide ABC tran 99.9 2.5E-27 5.5E-32 208.1 14.7 150 3-155 41-253 (331)
95 cd03225 ABC_cobalt_CbiO_domain 99.9 1.7E-27 3.7E-32 196.2 12.8 130 4-134 22-206 (211)
96 COG0444 DppD ABC-type dipeptid 99.9 4.3E-27 9.2E-32 201.5 15.6 156 3-160 25-250 (316)
97 cd03298 ABC_ThiQ_thiamine_tran 99.9 2.1E-27 4.5E-32 195.8 13.2 138 4-144 19-209 (211)
98 COG4559 ABC-type hemin transpo 99.9 2.1E-27 4.6E-32 192.4 12.8 148 3-153 21-230 (259)
99 PRK13638 cbiO cobalt transport 99.9 2.8E-27 6.1E-32 202.3 14.4 146 4-152 22-224 (271)
100 PRK09544 znuC high-affinity zi 99.9 4.4E-27 9.6E-32 199.2 15.3 145 4-152 25-208 (251)
101 PRK13634 cbiO cobalt transport 99.9 2.4E-27 5.2E-32 204.8 13.9 145 4-152 28-234 (290)
102 cd03257 ABC_NikE_OppD_transpor 99.9 3.8E-27 8.1E-32 196.1 14.6 139 3-144 25-226 (228)
103 PRK10619 histidine/lysine/argi 99.9 4.5E-27 9.7E-32 199.5 15.2 147 3-152 25-240 (257)
104 cd03292 ABC_FtsE_transporter F 99.9 2.5E-27 5.5E-32 195.4 13.3 131 3-134 21-208 (214)
105 PRK15093 antimicrobial peptide 99.9 4.3E-27 9.2E-32 206.6 15.5 149 3-154 27-249 (330)
106 cd03223 ABCD_peroxisomal_ALDP 99.9 3.8E-27 8.3E-32 187.8 13.7 131 4-140 22-164 (166)
107 TIGR02770 nickel_nikD nickel i 99.9 4.9E-27 1.1E-31 196.2 14.9 147 3-152 6-214 (230)
108 cd03295 ABC_OpuCA_Osmoprotecti 99.9 4.3E-27 9.4E-32 197.9 14.7 147 3-152 21-224 (242)
109 TIGR03771 anch_rpt_ABC anchore 99.9 4.5E-27 9.7E-32 195.7 14.5 144 5-152 2-200 (223)
110 PRK11022 dppD dipeptide transp 99.9 2.7E-27 5.9E-32 207.5 13.8 150 3-155 27-245 (326)
111 PRK13650 cbiO cobalt transport 99.9 3E-27 6.5E-32 203.1 13.8 146 4-153 28-229 (279)
112 PRK10895 lipopolysaccharide AB 99.9 4.6E-27 1E-31 197.5 14.7 146 4-152 24-225 (241)
113 COG4608 AppF ABC-type oligopep 99.9 2.7E-27 5.8E-32 198.8 13.1 152 2-158 32-204 (268)
114 PRK13646 cbiO cobalt transport 99.9 3.3E-27 7.1E-32 203.5 13.8 147 4-153 28-235 (286)
115 PRK10771 thiQ thiamine transpo 99.9 5.7E-27 1.2E-31 196.0 14.5 146 4-152 20-218 (232)
116 PRK10908 cell division protein 99.9 3.8E-27 8.3E-32 195.7 13.3 136 4-142 23-215 (222)
117 PRK13548 hmuV hemin importer A 99.9 6.3E-27 1.4E-31 198.9 14.9 146 4-152 23-229 (258)
118 PRK13652 cbiO cobalt transport 99.9 6E-27 1.3E-31 201.0 14.8 146 4-152 25-226 (277)
119 PRK13649 cbiO cobalt transport 99.9 5.9E-27 1.3E-31 201.2 14.6 145 4-152 28-233 (280)
120 TIGR02211 LolD_lipo_ex lipopro 99.9 4.6E-27 9.9E-32 194.9 13.4 129 4-134 26-213 (221)
121 cd03232 ABC_PDR_domain2 The pl 99.9 8.3E-27 1.8E-31 189.9 14.6 140 4-145 28-191 (192)
122 PRK11231 fecE iron-dicitrate t 99.9 5.9E-27 1.3E-31 198.6 14.3 146 4-152 23-226 (255)
123 PRK15112 antimicrobial peptide 99.9 4.4E-27 9.5E-32 200.8 13.6 148 3-153 33-239 (267)
124 PRK11701 phnK phosphonate C-P 99.9 8.5E-27 1.8E-31 197.9 15.2 146 4-152 27-240 (258)
125 cd03300 ABC_PotA_N PotA is an 99.9 9.4E-27 2E-31 194.7 15.2 146 4-152 21-219 (232)
126 PRK09473 oppD oligopeptide tra 99.9 7.2E-27 1.6E-31 205.1 15.1 151 3-155 36-253 (330)
127 cd03260 ABC_PstB_phosphate_tra 99.9 3.3E-27 7.2E-32 196.6 12.4 140 4-148 21-224 (227)
128 TIGR03873 F420-0_ABC_ATP propo 99.9 7.3E-27 1.6E-31 198.1 14.7 147 3-152 21-225 (256)
129 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 4E-27 8.6E-32 183.6 12.0 114 5-134 22-139 (144)
130 PRK13644 cbiO cobalt transport 99.9 6.6E-27 1.4E-31 200.5 14.4 145 4-152 23-223 (274)
131 PRK13636 cbiO cobalt transport 99.9 6.8E-27 1.5E-31 201.3 14.5 146 4-152 27-230 (283)
132 TIGR03411 urea_trans_UrtD urea 99.9 9.4E-27 2E-31 195.6 15.0 145 4-152 23-230 (242)
133 TIGR03005 ectoine_ehuA ectoine 99.9 9.9E-27 2.1E-31 196.8 15.0 147 3-152 20-235 (252)
134 COG2884 FtsE Predicted ATPase 99.9 5.5E-27 1.2E-31 187.0 12.5 140 3-145 22-218 (223)
135 cd03247 ABCC_cytochrome_bd The 99.9 5.8E-27 1.3E-31 188.5 12.9 136 4-144 23-176 (178)
136 PRK13631 cbiO cobalt transport 99.9 7E-27 1.5E-31 204.4 14.2 147 4-153 47-265 (320)
137 PRK11124 artP arginine transpo 99.9 1.1E-26 2.3E-31 195.4 14.7 145 3-150 22-227 (242)
138 PRK10575 iron-hydroxamate tran 99.9 9.1E-27 2E-31 198.6 14.5 146 4-152 32-236 (265)
139 PRK11629 lolD lipoprotein tran 99.9 8.2E-27 1.8E-31 195.2 14.0 138 4-145 30-226 (233)
140 PRK13546 teichoic acids export 99.9 1.3E-26 2.8E-31 197.8 15.4 148 4-154 45-233 (264)
141 cd03297 ABC_ModC_molybdenum_tr 99.9 8.3E-27 1.8E-31 192.7 13.8 138 3-144 18-212 (214)
142 PRK09984 phosphonate/organopho 99.9 1.2E-26 2.5E-31 197.5 15.0 146 4-151 25-240 (262)
143 TIGR02323 CP_lyasePhnK phospho 99.9 1.1E-26 2.3E-31 196.6 14.6 146 4-152 24-237 (253)
144 COG4586 ABC-type uncharacteriz 99.9 4E-27 8.7E-32 196.9 11.7 146 2-150 43-243 (325)
145 TIGR02769 nickel_nikE nickel i 99.9 1.2E-26 2.7E-31 197.8 14.9 146 4-152 32-239 (265)
146 TIGR01277 thiQ thiamine ABC tr 99.9 1.2E-26 2.6E-31 191.7 14.4 140 4-146 19-211 (213)
147 PRK13639 cbiO cobalt transport 99.9 1.3E-26 2.8E-31 198.7 14.8 146 4-152 23-225 (275)
148 PRK10418 nikD nickel transport 99.9 1.7E-26 3.7E-31 195.7 15.4 147 4-153 24-230 (254)
149 cd03217 ABC_FeS_Assembly ABC-t 99.9 1.2E-26 2.6E-31 190.1 14.0 143 4-149 21-190 (200)
150 PRK15056 manganese/iron transp 99.9 1.6E-26 3.4E-31 197.9 15.3 145 4-152 28-229 (272)
151 PRK10253 iron-enterobactin tra 99.9 1.4E-26 3.1E-31 197.4 14.7 147 3-152 27-232 (265)
152 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.3E-26 2.7E-31 193.2 14.0 138 4-144 43-222 (224)
153 cd03262 ABC_HisP_GlnQ_permease 99.9 1.2E-26 2.6E-31 191.3 13.7 129 5-134 22-207 (213)
154 cd03237 ABC_RNaseL_inhibitor_d 99.9 2.4E-26 5.1E-31 194.2 15.8 132 5-138 21-191 (246)
155 PRK10584 putative ABC transpor 99.9 1.4E-26 2.9E-31 193.0 14.1 136 4-143 31-225 (228)
156 cd03228 ABCC_MRP_Like The MRP 99.9 2.7E-27 5.8E-32 189.4 9.4 125 5-134 24-166 (171)
157 cd03267 ABC_NatA_like Similar 99.9 1.6E-26 3.4E-31 194.0 14.4 138 4-144 42-234 (236)
158 PRK14247 phosphate ABC transpo 99.9 2.1E-26 4.5E-31 194.5 14.9 147 4-153 24-234 (250)
159 TIGR00972 3a0107s01c2 phosphat 99.9 2.1E-26 4.6E-31 194.2 15.0 146 3-152 21-231 (247)
160 TIGR01978 sufC FeS assembly AT 99.9 1.9E-26 4.2E-31 193.6 14.7 143 4-149 21-230 (243)
161 PRK15439 autoinducer 2 ABC tra 99.9 1.4E-26 3.1E-31 214.0 15.1 145 4-151 32-227 (510)
162 cd03264 ABC_drug_resistance_li 99.9 1.3E-26 2.8E-31 191.1 12.9 135 5-144 22-209 (211)
163 PRK13635 cbiO cobalt transport 99.9 1.6E-26 3.4E-31 198.7 14.0 145 4-152 28-228 (279)
164 PRK14268 phosphate ABC transpo 99.9 1.6E-26 3.5E-31 196.2 13.9 145 4-153 33-242 (258)
165 PRK13645 cbiO cobalt transport 99.9 1.7E-26 3.6E-31 199.3 14.0 146 4-152 32-239 (289)
166 PRK10938 putative molybdenum t 99.9 1.7E-26 3.7E-31 212.5 15.0 146 3-151 23-222 (490)
167 PRK14267 phosphate ABC transpo 99.9 2.6E-26 5.6E-31 194.3 14.8 148 3-153 24-237 (253)
168 cd03299 ABC_ModC_like Archeal 99.9 3E-26 6.4E-31 192.1 14.9 146 4-152 20-218 (235)
169 PRK13648 cbiO cobalt transport 99.9 2E-26 4.4E-31 196.8 14.2 145 4-152 30-230 (269)
170 TIGR00968 3a0106s01 sulfate AB 99.9 2.9E-26 6.3E-31 192.4 14.6 146 4-152 21-219 (237)
171 PRK14242 phosphate transporter 99.9 3.5E-26 7.7E-31 193.4 14.9 144 4-152 27-236 (253)
172 PRK13640 cbiO cobalt transport 99.9 2.3E-26 5.1E-31 197.8 14.0 146 4-152 28-231 (282)
173 PRK13545 tagH teichoic acids e 99.9 2.2E-26 4.8E-31 210.3 14.6 148 4-154 45-233 (549)
174 cd03252 ABCC_Hemolysin The ABC 99.9 2.8E-26 6.1E-31 192.2 13.8 143 5-152 24-224 (237)
175 PRK09700 D-allose transporter 99.9 2E-26 4.4E-31 213.0 14.2 145 3-150 25-231 (510)
176 PRK14273 phosphate ABC transpo 99.9 3.8E-26 8.3E-31 193.4 14.6 146 3-152 27-237 (254)
177 PRK15177 Vi polysaccharide exp 99.9 7E-26 1.5E-30 187.5 15.3 147 3-152 7-191 (213)
178 PRK09580 sufC cysteine desulfu 99.9 4.2E-26 9.1E-31 192.3 14.2 144 4-150 22-232 (248)
179 PRK14269 phosphate ABC transpo 99.9 5.5E-26 1.2E-30 191.7 14.8 145 4-153 23-230 (246)
180 PRK14235 phosphate transporter 99.9 5.8E-26 1.3E-30 193.9 15.1 144 4-152 40-250 (267)
181 cd03254 ABCC_Glucan_exporter_l 99.9 4.1E-26 8.9E-31 190.2 13.7 142 4-150 24-223 (229)
182 PRK10762 D-ribose transporter 99.9 2.9E-26 6.3E-31 211.5 14.0 144 3-149 24-226 (501)
183 PRK14248 phosphate ABC transpo 99.9 6.9E-26 1.5E-30 193.4 15.0 145 4-153 42-252 (268)
184 cd03245 ABCC_bacteriocin_expor 99.9 5.7E-26 1.2E-30 188.2 14.0 135 4-143 25-217 (220)
185 PRK13633 cobalt transporter AT 99.9 5E-26 1.1E-30 195.6 14.0 146 4-153 31-233 (280)
186 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 5.3E-26 1.2E-30 190.6 13.8 142 5-151 25-224 (238)
187 TIGR03608 L_ocin_972_ABC putat 99.9 4.4E-26 9.6E-31 187.0 13.1 128 4-133 19-204 (206)
188 PRK13642 cbiO cobalt transport 99.9 6.3E-26 1.4E-30 194.7 14.5 145 4-152 28-228 (277)
189 PRK14272 phosphate ABC transpo 99.9 9.7E-26 2.1E-30 190.6 15.4 146 4-152 25-235 (252)
190 PRK14256 phosphate ABC transpo 99.9 8.8E-26 1.9E-30 191.0 14.9 148 3-153 24-236 (252)
191 PRK14249 phosphate ABC transpo 99.9 9.4E-26 2E-30 190.7 15.0 146 4-153 25-235 (251)
192 PRK14270 phosphate ABC transpo 99.9 1E-25 2.2E-30 190.5 15.1 146 3-153 24-235 (251)
193 PRK13549 xylose transporter AT 99.9 4.4E-26 9.5E-31 210.6 13.9 145 3-150 25-229 (506)
194 COG1123 ATPase components of v 99.9 6.2E-26 1.3E-30 206.8 14.6 155 3-159 29-250 (539)
195 cd03233 ABC_PDR_domain1 The pl 99.9 6.6E-26 1.4E-30 186.1 13.3 138 4-144 28-200 (202)
196 PRK10261 glutathione transport 99.9 8E-26 1.7E-30 213.5 15.6 149 3-154 344-554 (623)
197 PRK14265 phosphate ABC transpo 99.9 8.4E-26 1.8E-30 193.7 14.3 148 3-153 40-258 (274)
198 cd03251 ABCC_MsbA MsbA is an e 99.9 6.2E-26 1.3E-30 189.7 13.2 143 5-152 24-224 (234)
199 PRK10982 galactose/methyl gala 99.9 6.5E-26 1.4E-30 208.7 14.6 144 4-150 19-220 (491)
200 PRK14274 phosphate ABC transpo 99.9 1.2E-25 2.7E-30 190.9 15.1 145 5-153 34-243 (259)
201 cd03234 ABCG_White The White s 99.9 9.7E-26 2.1E-30 187.8 14.2 138 5-145 29-225 (226)
202 PRK03695 vitamin B12-transport 99.9 7.8E-26 1.7E-30 191.2 13.8 146 3-152 16-221 (248)
203 PRK14240 phosphate transporter 99.9 1.1E-25 2.3E-30 190.2 14.5 145 4-152 24-233 (250)
204 PRK10744 pstB phosphate transp 99.9 1.1E-25 2.4E-30 191.3 14.8 145 4-153 34-244 (260)
205 PRK14244 phosphate ABC transpo 99.9 1.2E-25 2.6E-30 190.1 14.7 144 4-152 26-236 (251)
206 PRK14241 phosphate transporter 99.9 1.9E-25 4E-30 189.7 15.9 149 3-153 24-242 (258)
207 PRK14262 phosphate ABC transpo 99.9 1.3E-25 2.8E-30 189.7 14.8 144 4-152 24-233 (250)
208 PRK11288 araG L-arabinose tran 99.9 4.2E-26 9.1E-31 210.5 12.9 145 3-150 273-482 (501)
209 PRK14246 phosphate ABC transpo 99.9 1.4E-25 3.1E-30 190.6 15.1 149 4-155 31-243 (257)
210 PRK14245 phosphate ABC transpo 99.9 1.3E-25 2.9E-30 189.7 14.8 146 4-153 24-234 (250)
211 PRK14239 phosphate transporter 99.9 1.6E-25 3.6E-30 189.2 15.3 146 4-153 26-236 (252)
212 CHL00131 ycf16 sulfate ABC tra 99.9 1.3E-25 2.8E-30 189.8 14.7 143 4-149 28-237 (252)
213 TIGR02324 CP_lyasePhnL phospho 99.9 9E-26 1.9E-30 187.6 13.5 129 4-133 29-220 (224)
214 PRK13543 cytochrome c biogenes 99.9 9.2E-26 2E-30 186.7 13.4 131 3-134 31-209 (214)
215 PRK14238 phosphate transporter 99.9 1.3E-25 2.9E-30 192.1 14.8 146 3-153 44-255 (271)
216 PRK13632 cbiO cobalt transport 99.9 9.2E-26 2E-30 193.0 13.7 145 4-152 30-230 (271)
217 cd03253 ABCC_ATM1_transporter 99.9 1.8E-25 4E-30 187.0 15.1 142 5-151 23-222 (236)
218 PRK14259 phosphate ABC transpo 99.9 1.2E-25 2.6E-30 192.2 14.2 147 4-153 34-253 (269)
219 COG4525 TauB ABC-type taurine 99.9 1.1E-25 2.5E-30 180.4 13.1 141 3-145 25-216 (259)
220 PRK14253 phosphate ABC transpo 99.9 1.2E-25 2.6E-30 189.8 13.9 147 3-152 23-232 (249)
221 PRK10419 nikE nickel transport 99.9 1.4E-25 3.1E-30 191.6 14.5 146 4-152 33-240 (268)
222 cd03238 ABC_UvrA The excision 99.9 1.7E-25 3.7E-30 179.9 14.1 124 3-134 15-160 (176)
223 TIGR01187 potA spermidine/putr 99.9 7.3E-26 1.6E-30 198.4 13.0 140 14-156 1-193 (325)
224 cd03231 ABC_CcmA_heme_exporter 99.9 1.3E-25 2.8E-30 184.1 13.4 130 3-133 20-196 (201)
225 TIGR03269 met_CoM_red_A2 methy 99.9 1.7E-25 3.6E-30 207.3 15.7 82 70-153 169-258 (520)
226 PRK13547 hmuV hemin importer A 99.9 1.5E-25 3.4E-30 191.9 14.3 147 4-152 22-243 (272)
227 PRK14251 phosphate ABC transpo 99.9 2.2E-25 4.8E-30 188.4 15.0 145 4-153 25-235 (251)
228 PRK14261 phosphate ABC transpo 99.9 1.5E-25 3.3E-30 189.7 14.0 147 4-153 27-237 (253)
229 PRK14254 phosphate ABC transpo 99.9 2E-25 4.4E-30 192.3 15.0 145 4-152 60-268 (285)
230 PRK10261 glutathione transport 99.9 8.2E-26 1.8E-30 213.4 13.7 147 3-152 36-257 (623)
231 PRK14258 phosphate ABC transpo 99.9 2.6E-25 5.7E-30 189.2 15.4 148 3-153 27-245 (261)
232 PRK14263 phosphate ABC transpo 99.9 2.1E-25 4.6E-30 189.9 14.8 147 4-153 29-245 (261)
233 TIGR03269 met_CoM_red_A2 methy 99.9 2E-25 4.4E-30 206.7 15.9 146 4-152 305-516 (520)
234 PRK15064 ABC transporter ATP-b 99.9 3.1E-25 6.7E-30 206.0 16.8 145 3-150 21-239 (530)
235 cd03369 ABCC_NFT1 Domain 2 of 99.9 1.3E-25 2.9E-30 184.5 12.6 137 4-146 29-205 (207)
236 cd00267 ABC_ATPase ABC (ATP-bi 99.9 7.4E-26 1.6E-30 178.4 10.6 122 5-134 21-152 (157)
237 PRK15134 microcin C ABC transp 99.9 1.4E-25 3.1E-30 208.2 14.3 148 3-152 29-245 (529)
238 PRK14236 phosphate transporter 99.9 2.3E-25 5E-30 190.6 14.4 144 4-152 46-255 (272)
239 PRK14275 phosphate ABC transpo 99.9 3E-25 6.4E-30 191.4 15.0 146 4-153 60-270 (286)
240 PRK14255 phosphate ABC transpo 99.9 3.5E-25 7.7E-30 187.2 15.2 146 4-153 26-236 (252)
241 TIGR01166 cbiO cobalt transpor 99.9 1.4E-25 3E-30 182.1 12.2 121 3-124 12-189 (190)
242 COG4604 CeuD ABC-type enteroch 99.9 1.1E-25 2.3E-30 180.7 11.2 149 2-153 20-225 (252)
243 PRK14237 phosphate transporter 99.9 3.3E-25 7.2E-30 189.2 14.9 146 3-153 40-251 (267)
244 PRK11288 araG L-arabinose tran 99.9 1.9E-25 4.1E-30 206.1 14.4 140 3-145 24-221 (501)
245 TIGR02633 xylG D-xylose ABC tr 99.9 1.6E-25 3.5E-30 206.5 13.9 144 3-149 21-226 (500)
246 COG4598 HisP ABC-type histidin 99.9 1E-25 2.2E-30 178.7 10.7 159 2-163 25-251 (256)
247 cd03250 ABCC_MRP_domain1 Domai 99.9 2.3E-25 4.9E-30 182.8 13.3 129 4-134 26-199 (204)
248 COG1134 TagH ABC-type polysacc 99.9 6.4E-25 1.4E-29 181.5 15.9 154 3-159 47-242 (249)
249 PRK15439 autoinducer 2 ABC tra 99.9 1.1E-25 2.5E-30 208.0 12.8 145 3-150 283-489 (510)
250 PRK14260 phosphate ABC transpo 99.9 3.9E-25 8.5E-30 187.9 14.9 148 3-153 27-243 (259)
251 PRK09700 D-allose transporter 99.9 2E-25 4.3E-30 206.4 14.2 143 3-148 283-493 (510)
252 PRK13549 xylose transporter AT 99.9 1.2E-25 2.5E-30 207.8 12.6 144 4-150 283-491 (506)
253 PRK13538 cytochrome c biogenes 99.9 2.2E-25 4.7E-30 183.1 12.9 130 3-133 21-200 (204)
254 PRK10762 D-ribose transporter 99.9 1.3E-25 2.9E-30 207.2 12.6 144 4-150 273-481 (501)
255 PRK14264 phosphate ABC transpo 99.9 4.4E-25 9.6E-30 191.9 14.8 147 4-153 66-289 (305)
256 cd03289 ABCC_CFTR2 The CFTR su 99.9 5.1E-25 1.1E-29 188.9 15.0 146 3-153 24-225 (275)
257 PRK10247 putative ABC transpor 99.9 2.3E-25 4.9E-30 185.7 12.4 128 4-134 28-209 (225)
258 cd03291 ABCC_CFTR1 The CFTR su 99.9 1.1E-24 2.5E-29 187.4 16.8 145 4-152 58-246 (282)
259 PRK14257 phosphate ABC transpo 99.9 4.1E-25 8.9E-30 193.9 14.3 147 4-155 103-315 (329)
260 PRK14271 phosphate ABC transpo 99.9 4.7E-25 1E-29 189.2 14.2 146 4-153 42-251 (276)
261 PRK13409 putative ATPase RIL; 99.9 2.7E-25 5.9E-30 208.3 13.8 129 5-134 361-526 (590)
262 COG0488 Uup ATPase components 99.9 4.1E-25 8.8E-30 203.6 14.7 147 3-152 23-238 (530)
263 cd03236 ABC_RNaseL_inhibitor_d 99.9 4.2E-25 9.1E-30 187.5 13.6 129 5-134 22-211 (255)
264 COG4148 ModC ABC-type molybdat 99.9 2.7E-25 5.9E-30 186.6 12.1 143 10-155 25-220 (352)
265 TIGR01257 rim_protein retinal- 99.9 4.1E-25 8.9E-30 226.4 15.9 147 3-152 1959-2158(2272)
266 PRK11819 putative ABC transpor 99.9 6.6E-25 1.4E-29 204.9 16.0 144 3-149 27-246 (556)
267 PRK10982 galactose/methyl gala 99.9 2.5E-25 5.4E-30 204.9 12.6 142 4-148 269-475 (491)
268 PRK14243 phosphate transporter 99.9 6.9E-25 1.5E-29 187.0 14.1 147 3-153 30-248 (264)
269 TIGR02633 xylG D-xylose ABC tr 99.9 3.6E-25 7.9E-30 204.1 12.9 141 4-147 281-486 (500)
270 cd03244 ABCC_MRP_domain2 Domai 99.9 5.6E-25 1.2E-29 182.4 12.8 138 4-146 25-219 (221)
271 PRK15134 microcin C ABC transp 99.9 6.5E-25 1.4E-29 203.8 14.7 146 3-152 306-514 (529)
272 cd03288 ABCC_SUR2 The SUR doma 99.9 1.7E-24 3.7E-29 183.8 16.0 145 4-152 42-242 (257)
273 PRK14252 phosphate ABC transpo 99.9 9.7E-25 2.1E-29 186.0 14.4 145 5-152 38-248 (265)
274 PRK10636 putative ABC transpor 99.9 1.2E-24 2.7E-29 205.9 16.1 140 3-145 21-227 (638)
275 TIGR02982 heterocyst_DevA ABC 99.9 8.1E-25 1.8E-29 181.6 13.1 129 4-134 26-213 (220)
276 PRK13539 cytochrome c biogenes 99.9 1E-24 2.2E-29 179.5 13.2 127 4-133 23-196 (207)
277 cd03290 ABCC_SUR1_N The SUR do 99.9 1.4E-24 3.1E-29 179.8 14.2 129 4-134 22-213 (218)
278 PRK15064 ABC transporter ATP-b 99.9 1.2E-24 2.6E-29 202.0 14.8 146 3-151 339-523 (530)
279 PLN03211 ABC transporter G-25; 99.9 1.8E-24 3.9E-29 205.0 16.2 147 4-152 89-295 (659)
280 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 2.2E-24 4.9E-29 201.2 16.4 145 3-150 25-245 (552)
281 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 1.2E-24 2.6E-29 208.3 14.8 145 4-152 500-699 (710)
282 COG2274 SunT ABC-type bacterio 99.9 3.4E-25 7.3E-30 210.1 10.7 147 3-154 493-697 (709)
283 PRK13540 cytochrome c biogenes 99.9 1.5E-24 3.2E-29 177.6 12.9 126 4-131 22-195 (200)
284 cd03248 ABCC_TAP TAP, the Tran 99.9 8.4E-25 1.8E-29 182.0 11.6 128 4-134 35-220 (226)
285 PRK14266 phosphate ABC transpo 99.9 2.2E-24 4.7E-29 182.2 14.3 145 4-152 24-233 (250)
286 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 2E-24 4.4E-29 206.1 15.6 145 4-152 474-672 (686)
287 PRK10636 putative ABC transpor 99.9 1.7E-24 3.7E-29 204.9 15.0 144 4-150 333-514 (638)
288 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 3.1E-24 6.8E-29 200.2 15.9 144 3-148 342-526 (552)
289 PRK11147 ABC transporter ATPas 99.9 3.5E-24 7.6E-29 202.8 16.4 144 3-149 23-239 (635)
290 PRK11147 ABC transporter ATPas 99.9 1.7E-24 3.8E-29 204.9 14.0 147 4-152 340-526 (635)
291 TIGR01189 ccmA heme ABC export 99.9 2.3E-24 5.1E-29 176.1 12.8 126 4-132 21-195 (198)
292 COG1129 MglA ABC-type sugar tr 99.9 1.7E-24 3.8E-29 196.0 13.1 142 3-147 28-228 (500)
293 PRK13541 cytochrome c biogenes 99.9 2.2E-24 4.8E-29 175.9 12.1 122 4-126 21-187 (195)
294 PLN03073 ABC transporter F fam 99.9 4.4E-24 9.6E-29 203.8 15.8 143 4-149 530-710 (718)
295 PRK11819 putative ABC transpor 99.9 5.4E-24 1.2E-28 198.7 16.0 145 3-149 344-529 (556)
296 COG4181 Predicted ABC-type tra 99.9 4.1E-24 8.9E-29 168.3 12.3 130 3-134 30-218 (228)
297 COG4172 ABC-type uncharacteriz 99.9 6.6E-24 1.4E-28 185.8 14.7 157 2-162 306-525 (534)
298 PRK11174 cysteine/glutathione 99.9 4.9E-24 1.1E-28 200.1 14.6 144 4-152 371-571 (588)
299 TIGR01257 rim_protein retinal- 99.9 4.5E-24 9.7E-29 218.9 14.8 144 4-151 951-1147(2272)
300 PRK13409 putative ATPase RIL; 99.9 3.8E-24 8.2E-29 200.6 12.7 128 5-134 95-283 (590)
301 PRK10790 putative multidrug tr 99.9 8.1E-24 1.7E-28 198.8 14.8 145 4-152 362-562 (592)
302 TIGR03375 type_I_sec_LssB type 99.9 9.1E-24 2E-28 201.8 15.1 145 4-152 486-687 (694)
303 TIGR00958 3a01208 Conjugate Tr 99.9 9.6E-24 2.1E-28 202.1 15.1 145 4-152 502-701 (711)
304 TIGR01842 type_I_sec_PrtD type 99.9 7.7E-24 1.7E-28 197.2 14.0 144 4-151 339-540 (544)
305 PRK11176 lipid transporter ATP 99.9 2.9E-24 6.2E-29 201.3 11.0 146 4-153 364-567 (582)
306 PRK13657 cyclic beta-1,2-gluca 99.9 1.2E-23 2.7E-28 197.4 15.0 145 4-152 356-557 (588)
307 COG3845 ABC-type uncharacteriz 99.9 5E-24 1.1E-28 190.4 11.4 140 2-144 23-220 (501)
308 TIGR01192 chvA glucan exporter 99.9 2E-23 4.4E-28 195.9 15.1 145 4-152 356-557 (585)
309 TIGR02203 MsbA_lipidA lipid A 99.9 2.1E-23 4.6E-28 195.0 15.0 144 5-152 354-555 (571)
310 COG1119 ModF ABC-type molybden 99.9 8.3E-24 1.8E-28 174.9 10.7 140 3-145 51-254 (257)
311 COG4988 CydD ABC-type transpor 99.9 1.7E-23 3.6E-28 190.6 13.6 144 4-153 342-543 (559)
312 PRK11160 cysteine/glutathione 99.9 3.1E-23 6.7E-28 194.3 15.8 144 4-152 361-561 (574)
313 TIGR01193 bacteriocin_ABC ABC- 99.9 1.9E-23 4.1E-28 200.0 14.6 145 4-152 495-696 (708)
314 COG4167 SapF ABC-type antimicr 99.9 2.8E-23 6E-28 165.3 12.9 159 2-163 32-249 (267)
315 PRK10938 putative molybdenum t 99.9 7.3E-24 1.6E-28 195.0 11.1 140 4-145 281-484 (490)
316 PLN03073 ABC transporter F fam 99.9 4.7E-23 1E-27 196.8 16.7 139 3-145 197-422 (718)
317 PRK10789 putative multidrug tr 99.9 3.2E-23 6.9E-28 194.0 15.0 145 4-152 336-537 (569)
318 COG4618 ArpD ABC-type protease 99.9 1.4E-23 3.1E-28 187.9 11.6 147 3-154 356-561 (580)
319 COG4161 ArtP ABC-type arginine 99.9 6.2E-23 1.4E-27 160.4 13.2 142 6-150 25-227 (242)
320 TIGR00955 3a01204 The Eye Pigm 99.9 5.8E-23 1.3E-27 193.9 15.7 148 3-152 45-255 (617)
321 COG4619 ABC-type uncharacteriz 99.9 2.5E-23 5.4E-28 163.4 10.7 132 2-134 22-206 (223)
322 TIGR02204 MsbA_rel ABC transpo 99.9 6.8E-23 1.5E-27 191.8 14.9 144 5-152 362-562 (576)
323 COG4987 CydC ABC-type transpor 99.9 3.7E-23 8.1E-28 186.4 12.5 146 4-153 359-561 (573)
324 COG4107 PhnK ABC-type phosphon 99.9 5.9E-23 1.3E-27 162.3 12.0 148 3-153 26-241 (258)
325 TIGR00954 3a01203 Peroxysomal 99.9 6.9E-23 1.5E-27 194.6 14.8 129 4-134 473-650 (659)
326 TIGR01846 type_I_sec_HlyB type 99.9 2.4E-23 5.1E-28 199.0 11.2 145 4-152 478-679 (694)
327 COG1101 PhnK ABC-type uncharac 99.9 4.2E-23 9.1E-28 167.8 10.2 144 3-149 26-234 (263)
328 cd03270 ABC_UvrA_I The excisio 99.9 2E-22 4.3E-27 168.2 14.3 73 71-145 139-225 (226)
329 COG0488 Uup ATPase components 99.9 1.4E-22 3E-27 186.9 13.9 133 4-138 343-511 (530)
330 PRK10535 macrolide transporter 99.9 1.3E-22 2.9E-27 192.4 13.9 142 5-150 30-229 (648)
331 COG1132 MdlB ABC-type multidru 99.9 5.3E-23 1.2E-27 192.4 10.9 144 4-153 350-552 (567)
332 KOG0055 Multidrug/pheromone ex 99.9 1.9E-22 4E-27 196.4 14.1 148 3-154 373-577 (1228)
333 COG4778 PhnL ABC-type phosphon 99.9 2.1E-22 4.5E-27 158.6 11.3 132 2-134 30-224 (235)
334 TIGR02868 CydC thiol reductant 99.9 1.8E-22 3.9E-27 187.3 12.9 118 4-122 356-529 (529)
335 COG4172 ABC-type uncharacteriz 99.9 4.5E-22 9.8E-27 174.4 13.7 155 3-159 30-253 (534)
336 PRK10522 multidrug transporter 99.9 3.5E-22 7.5E-27 186.3 14.0 138 4-145 344-530 (547)
337 TIGR00956 3a01205 Pleiotropic 99.9 4.7E-22 1E-26 201.3 15.0 145 3-149 783-989 (1394)
338 TIGR02857 CydD thiol reductant 99.9 3.9E-22 8.4E-27 185.1 13.2 128 4-133 343-527 (529)
339 TIGR01194 cyc_pep_trnsptr cycl 99.9 1.3E-22 2.9E-27 189.4 10.0 137 4-144 363-550 (555)
340 KOG0058 Peptide exporter, ABC 99.9 2E-22 4.3E-27 187.1 11.0 147 3-154 488-692 (716)
341 PLN03140 ABC transporter G fam 99.9 5E-22 1.1E-26 201.2 14.6 146 3-149 900-1106(1470)
342 KOG0057 Mitochondrial Fe/S clu 99.9 6.7E-22 1.5E-26 178.5 13.3 145 3-153 372-574 (591)
343 KOG0059 Lipid exporter ABCA1 a 99.9 5.4E-22 1.2E-26 193.6 12.8 155 2-167 584-793 (885)
344 COG0396 sufC Cysteine desulfur 99.9 1.7E-21 3.6E-26 159.8 13.5 144 4-149 25-230 (251)
345 PLN03130 ABC transporter C fam 99.9 6.2E-22 1.3E-26 202.5 13.6 146 3-153 1259-1461(1622)
346 PLN03232 ABC transporter C fam 99.9 8.4E-22 1.8E-26 200.9 13.8 147 3-153 1256-1458(1495)
347 PTZ00265 multidrug resistance 99.9 1.3E-21 2.8E-26 198.7 13.9 67 70-138 580-654 (1466)
348 COG4674 Uncharacterized ABC-ty 99.9 2.2E-22 4.8E-27 161.4 6.5 147 2-152 24-234 (249)
349 TIGR01271 CFTR_protein cystic 99.9 1.8E-21 3.9E-26 198.3 14.3 144 5-152 448-635 (1490)
350 COG4133 CcmA ABC-type transpor 99.9 2.8E-21 6.1E-26 154.1 12.1 119 4-123 23-191 (209)
351 PLN03140 ABC transporter G fam 99.9 1.6E-21 3.5E-26 197.5 13.5 80 71-152 338-426 (1470)
352 PTZ00265 multidrug resistance 99.9 1.9E-21 4.1E-26 197.4 13.4 81 70-152 1359-1451(1466)
353 TIGR00956 3a01205 Pleiotropic 99.9 3.5E-21 7.5E-26 195.1 15.1 146 3-151 81-298 (1394)
354 cd03278 ABC_SMC_barmotin Barmo 99.9 2.4E-21 5.3E-26 158.5 11.3 127 5-134 19-187 (197)
355 PTZ00243 ABC transporter; Prov 99.9 3.9E-21 8.5E-26 196.3 14.8 144 4-152 681-869 (1560)
356 TIGR00957 MRP_assoc_pro multi 99.9 5.4E-21 1.2E-25 195.3 15.4 147 3-153 1306-1508(1522)
357 TIGR00957 MRP_assoc_pro multi 99.9 4.3E-21 9.4E-26 196.0 14.4 145 4-152 659-849 (1522)
358 PLN03232 ABC transporter C fam 99.9 6E-21 1.3E-25 194.7 15.0 146 4-152 638-827 (1495)
359 TIGR01271 CFTR_protein cystic 99.9 8.5E-21 1.9E-25 193.4 15.3 144 4-153 1240-1440(1490)
360 PTZ00243 ABC transporter; Prov 99.8 7.2E-21 1.6E-25 194.4 14.4 145 4-153 1331-1533(1560)
361 KOG0061 Transporter, ABC super 99.8 1.1E-20 2.4E-25 177.8 14.2 148 3-152 50-259 (613)
362 PLN03130 ABC transporter C fam 99.8 1.1E-20 2.4E-25 193.4 15.2 146 4-152 638-827 (1622)
363 cd03279 ABC_sbcCD SbcCD and ot 99.8 8.8E-21 1.9E-25 156.8 10.6 65 70-134 124-205 (213)
364 KOG0062 ATPase component of AB 99.8 5.4E-21 1.2E-25 171.5 9.3 127 5-133 102-266 (582)
365 cd03271 ABC_UvrA_II The excisi 99.8 1E-19 2.2E-24 154.8 14.5 75 71-147 171-260 (261)
366 COG4136 ABC-type uncharacteriz 99.8 4.2E-20 9.2E-25 142.9 10.7 131 2-133 21-205 (213)
367 KOG0927 Predicted transporter 99.8 6.7E-20 1.4E-24 165.4 12.5 149 5-156 97-311 (614)
368 cd03272 ABC_SMC3_euk Eukaryoti 99.8 9E-20 2E-24 153.2 12.1 63 70-134 159-232 (243)
369 COG1245 Predicted ATPase, RNas 99.8 1.4E-19 3E-24 160.7 12.1 129 5-133 363-527 (591)
370 cd03240 ABC_Rad50 The catalyti 99.8 1.8E-19 3.8E-24 148.3 11.1 127 6-134 20-194 (204)
371 KOG0055 Multidrug/pheromone ex 99.8 3.2E-19 7E-24 174.0 14.6 146 4-153 1011-1213(1228)
372 PF00005 ABC_tran: ABC transpo 99.8 5.2E-20 1.1E-24 141.3 5.1 94 4-98 6-137 (137)
373 COG4138 BtuD ABC-type cobalami 99.8 1.2E-19 2.5E-24 143.7 5.2 146 3-152 19-220 (248)
374 KOG0927 Predicted transporter 99.8 8.3E-19 1.8E-23 158.3 11.2 133 6-140 413-583 (614)
375 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.2E-18 2.6E-23 142.7 9.2 130 5-144 23-170 (200)
376 cd03273 ABC_SMC2_euk Eukaryoti 99.8 3.3E-18 7.2E-23 144.8 12.1 63 71-134 168-240 (251)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.8 3E-18 6.5E-23 141.8 10.9 63 70-134 128-201 (212)
378 COG4178 ABC-type uncharacteriz 99.8 4.8E-18 1E-22 157.1 12.7 128 5-134 415-585 (604)
379 cd03275 ABC_SMC1_euk Eukaryoti 99.8 5.7E-18 1.2E-22 143.1 10.9 64 70-134 156-230 (247)
380 COG1245 Predicted ATPase, RNas 99.7 9.7E-18 2.1E-22 149.1 10.1 128 5-132 96-283 (591)
381 KOG0056 Heavy metal exporter H 99.7 2.2E-17 4.9E-22 147.9 12.0 148 3-154 558-762 (790)
382 KOG0054 Multidrug resistance-a 99.7 2.8E-17 6E-22 163.4 13.7 148 2-154 1159-1363(1381)
383 cd03276 ABC_SMC6_euk Eukaryoti 99.7 3.1E-17 6.7E-22 134.4 11.4 126 6-133 19-186 (198)
384 COG5265 ATM1 ABC-type transpor 99.7 8.5E-17 1.8E-21 141.9 13.9 147 2-152 282-485 (497)
385 KOG0054 Multidrug resistance-a 99.7 4.7E-17 1E-21 161.8 13.5 146 5-153 543-731 (1381)
386 TIGR00630 uvra excinuclease AB 99.7 1.2E-16 2.6E-21 155.6 15.5 78 71-150 830-922 (924)
387 cd03227 ABC_Class2 ABC-type Cl 99.7 3E-17 6.6E-22 130.2 9.2 120 8-133 20-151 (162)
388 cd03239 ABC_SMC_head The struc 99.7 6.5E-17 1.4E-21 130.4 11.3 123 11-134 24-169 (178)
389 COG4615 PvdE ABC-type sideroph 99.7 2.2E-17 4.8E-22 144.7 9.0 137 5-145 345-529 (546)
390 cd03243 ABC_MutS_homologs The 99.7 3E-17 6.6E-22 134.6 8.7 124 5-132 25-160 (202)
391 PRK00349 uvrA excinuclease ABC 99.7 1.6E-16 3.5E-21 154.9 14.9 81 71-153 832-927 (943)
392 PRK00635 excinuclease ABC subu 99.7 1.5E-16 3.4E-21 161.6 15.1 81 71-153 811-906 (1809)
393 KOG0065 Pleiotropic drug resis 99.7 8.7E-18 1.9E-22 164.4 5.7 147 3-150 811-1018(1391)
394 COG1129 MglA ABC-type sugar tr 99.7 1.2E-16 2.6E-21 145.3 12.2 140 3-145 279-482 (500)
395 KOG0062 ATPase component of AB 99.7 3.3E-16 7.1E-21 141.0 12.8 136 6-145 387-560 (582)
396 COG3854 SpoIIIAA ncharacterize 99.7 5.4E-17 1.2E-21 133.5 7.1 135 1-136 128-267 (308)
397 COG1066 Sms Predicted ATP-depe 99.7 1.2E-16 2.6E-21 140.7 8.9 192 6-208 90-318 (456)
398 KOG0066 eIF2-interacting prote 99.7 1.1E-16 2.3E-21 142.1 8.3 119 9-127 613-766 (807)
399 cd03283 ABC_MutS-like MutS-lik 99.7 2.1E-16 4.5E-21 129.6 9.1 119 5-128 21-154 (199)
400 KOG0060 Long-chain acyl-CoA tr 99.7 6.1E-16 1.3E-20 140.9 11.3 136 3-141 455-644 (659)
401 TIGR02858 spore_III_AA stage I 99.6 1.5E-15 3.4E-20 129.7 10.2 114 10-126 112-233 (270)
402 cd03277 ABC_SMC5_euk Eukaryoti 99.6 1.1E-15 2.5E-20 126.5 8.6 63 70-132 127-202 (213)
403 COG4170 SapD ABC-type antimicr 99.6 7.5E-16 1.6E-20 125.5 6.3 152 2-155 26-250 (330)
404 cd03285 ABC_MSH2_euk MutS2 hom 99.6 1.9E-15 4E-20 126.0 8.4 124 6-133 27-163 (222)
405 KOG0064 Peroxisomal long-chain 99.6 2.4E-15 5.3E-20 135.8 9.1 132 5-139 504-684 (728)
406 KOG2355 Predicted ABC-type tra 99.6 5.1E-15 1.1E-19 120.2 10.1 137 5-144 36-228 (291)
407 KOG0066 eIF2-interacting prote 99.6 4.8E-16 1E-20 138.0 3.7 63 71-133 414-480 (807)
408 cd03282 ABC_MSH4_euk MutS4 hom 99.6 7.2E-15 1.6E-19 120.9 9.8 122 5-130 25-159 (204)
409 cd03281 ABC_MSH5_euk MutS5 hom 99.6 2.1E-14 4.5E-19 118.9 11.3 112 10-128 30-160 (213)
410 smart00534 MUTSac ATPase domai 99.5 3.3E-14 7.1E-19 115.2 9.1 111 11-131 1-130 (185)
411 cd03284 ABC_MutS1 MutS1 homolo 99.5 4.9E-14 1.1E-18 116.9 9.8 116 10-132 31-162 (216)
412 PRK00635 excinuclease ABC subu 99.5 3.8E-13 8.2E-18 137.3 15.0 81 71-153 1701-1796(1809)
413 TIGR02788 VirB11 P-type DNA tr 99.5 3.3E-13 7.1E-18 117.7 11.2 125 4-134 139-264 (308)
414 cd03241 ABC_RecN RecN ATPase i 99.5 2.1E-13 4.6E-18 117.0 9.6 63 71-134 172-244 (276)
415 cd01121 Sms Sms (bacterial rad 99.5 1.1E-13 2.3E-18 123.4 7.5 194 5-208 78-308 (372)
416 cd01131 PilT Pilus retraction 99.5 6.6E-13 1.4E-17 108.7 11.3 117 11-133 3-119 (198)
417 COG3845 ABC-type uncharacteriz 99.4 1.3E-12 2.8E-17 117.6 11.6 144 2-148 277-487 (501)
418 COG0178 UvrA Excinuclease ATPa 99.4 4E-12 8.7E-17 120.0 14.0 81 71-153 824-919 (935)
419 TIGR01069 mutS2 MutS2 family p 99.4 5.3E-13 1.1E-17 128.7 7.2 116 6-125 318-448 (771)
420 cd03287 ABC_MSH3_euk MutS3 hom 99.4 2E-12 4.3E-17 107.7 9.2 120 5-127 27-159 (222)
421 COG2401 ABC-type ATPase fused 99.4 1.7E-12 3.7E-17 114.9 8.8 129 3-132 403-579 (593)
422 cd01130 VirB11-like_ATPase Typ 99.4 6.3E-12 1.4E-16 101.8 10.2 126 2-132 18-144 (186)
423 TIGR00416 sms DNA repair prote 99.3 1.9E-12 4.1E-17 118.3 7.3 193 5-208 90-320 (454)
424 KOG0063 RNAse L inhibitor, ABC 99.3 2.9E-12 6.3E-17 113.7 8.0 125 9-133 367-528 (592)
425 cd01124 KaiC KaiC is a circadi 99.3 8.2E-12 1.8E-16 100.3 9.6 122 11-133 1-160 (187)
426 TIGR01420 pilT_fam pilus retra 99.3 1.6E-11 3.4E-16 108.7 11.8 122 6-133 119-240 (343)
427 PRK13695 putative NTPase; Prov 99.3 2.5E-11 5.5E-16 97.1 10.8 131 11-145 2-156 (174)
428 KOG0065 Pleiotropic drug resis 99.3 1.2E-11 2.6E-16 121.9 9.6 147 4-152 136-350 (1391)
429 TIGR00630 uvra excinuclease AB 99.3 1.2E-11 2.6E-16 121.0 8.8 81 70-152 488-582 (924)
430 cd03242 ABC_RecF RecF is a rec 99.3 4.3E-11 9.3E-16 102.5 11.0 58 71-129 185-255 (270)
431 PRK00409 recombination and DNA 99.3 1.4E-11 3E-16 119.2 8.8 120 8-132 326-460 (782)
432 PRK00349 uvrA excinuclease ABC 99.3 1.4E-11 3E-16 120.8 8.6 80 71-152 491-584 (943)
433 PRK08533 flagellar accessory p 99.2 8.3E-11 1.8E-15 98.5 11.7 41 3-45 18-59 (230)
434 cd03286 ABC_MSH6_euk MutS6 hom 99.2 2.7E-11 5.9E-16 100.6 8.1 114 6-129 27-160 (218)
435 cd01120 RecA-like_NTPases RecA 99.2 6E-11 1.3E-15 92.1 8.5 114 11-125 1-140 (165)
436 PRK06067 flagellar accessory p 99.2 3.6E-10 7.7E-15 94.6 11.7 118 5-124 21-167 (234)
437 PRK11823 DNA repair protein Ra 99.1 9.2E-11 2E-15 107.1 7.8 190 5-206 76-304 (446)
438 smart00382 AAA ATPases associa 99.1 9.9E-10 2.1E-14 82.2 10.9 112 8-121 1-125 (148)
439 PRK13764 ATPase; Provisional 99.1 9.8E-10 2.1E-14 103.0 12.7 124 6-142 254-392 (602)
440 cd01129 PulE-GspE PulE/GspE Th 99.1 1.8E-09 4E-14 92.2 13.0 110 7-126 78-188 (264)
441 PF00437 T2SE: Type II/IV secr 99.1 6E-10 1.3E-14 95.1 9.5 120 3-132 121-241 (270)
442 KOG0063 RNAse L inhibitor, ABC 99.1 2.9E-10 6.3E-15 101.2 7.1 127 6-133 97-284 (592)
443 PF02463 SMC_N: RecF/RecN/SMC 99.0 2.9E-09 6.2E-14 88.1 11.6 64 69-133 136-209 (220)
444 TIGR02524 dot_icm_DotB Dot/Icm 99.0 2.2E-09 4.8E-14 95.4 10.3 125 6-133 131-257 (358)
445 PRK13851 type IV secretion sys 99.0 2.6E-09 5.7E-14 94.3 9.2 119 2-125 155-274 (344)
446 PRK13900 type IV secretion sys 98.9 5.9E-09 1.3E-13 91.8 10.6 117 4-124 155-272 (332)
447 PRK07721 fliI flagellum-specif 98.9 1.1E-08 2.4E-13 93.0 11.3 138 5-149 154-339 (438)
448 COG3910 Predicted ATPase [Gene 98.9 2.2E-08 4.7E-13 80.6 11.0 55 85-140 144-205 (233)
449 TIGR02782 TrbB_P P-type conjug 98.9 1.6E-08 3.4E-13 88.0 10.9 117 2-126 125-243 (299)
450 TIGR02525 plasmid_TraJ plasmid 98.9 1.8E-08 3.9E-13 90.0 11.1 121 7-132 147-269 (372)
451 PRK06793 fliI flagellum-specif 98.9 8.7E-09 1.9E-13 93.3 8.6 120 5-128 152-292 (432)
452 PTZ00132 GTP-binding nuclear p 98.8 4E-09 8.6E-14 86.9 5.4 34 74-107 157-195 (215)
453 COG0630 VirB11 Type IV secreto 98.8 1.8E-08 4E-13 88.0 9.6 116 2-124 136-253 (312)
454 TIGR02533 type_II_gspE general 98.8 5.1E-08 1.1E-12 90.0 12.8 108 8-125 241-349 (486)
455 PRK13894 conjugal transfer ATP 98.8 3.7E-08 8E-13 86.3 11.0 120 2-132 141-263 (319)
456 TIGR03819 heli_sec_ATPase heli 98.8 3.4E-08 7.4E-13 87.3 10.6 124 3-132 172-297 (340)
457 PRK13833 conjugal transfer pro 98.8 4E-08 8.7E-13 86.1 10.3 120 2-132 137-259 (323)
458 TIGR00618 sbcc exonuclease Sbc 98.8 1.4E-08 3E-13 101.7 7.6 69 66-134 947-1032(1042)
459 cd01128 rho_factor Transcripti 98.8 4E-08 8.6E-13 83.3 9.2 126 5-133 12-204 (249)
460 COG2805 PilT Tfp pilus assembl 98.7 8.3E-08 1.8E-12 82.3 10.4 118 10-133 126-243 (353)
461 PRK05399 DNA mismatch repair p 98.7 3E-08 6.6E-13 97.1 8.8 112 8-130 606-737 (854)
462 TIGR00634 recN DNA repair prot 98.7 2.3E-08 5E-13 94.0 6.9 64 69-134 440-514 (563)
463 PRK09183 transposase/IS protei 98.7 1.6E-08 3.5E-13 86.1 5.1 41 4-45 97-137 (259)
464 cd01125 repA Hexameric Replica 98.7 4.7E-08 1E-12 82.1 7.6 37 9-45 1-48 (239)
465 PRK08181 transposase; Validate 98.7 3.2E-08 6.9E-13 84.7 5.9 131 4-152 101-246 (269)
466 PRK06995 flhF flagellar biosyn 98.7 1.2E-07 2.7E-12 87.0 9.9 43 5-47 252-295 (484)
467 PRK10436 hypothetical protein; 98.7 3.2E-07 6.9E-12 84.2 12.5 109 7-125 216-325 (462)
468 cd00009 AAA The AAA+ (ATPases 98.7 1E-07 2.2E-12 71.8 7.8 103 8-123 18-131 (151)
469 PRK10869 recombination and rep 98.6 6.3E-08 1.4E-12 90.8 7.2 64 69-134 430-504 (553)
470 TIGR02538 type_IV_pilB type IV 98.6 3.6E-07 7.9E-12 85.9 12.3 107 8-124 315-422 (564)
471 COG2804 PulE Type II secretory 98.6 3.1E-07 6.6E-12 83.8 10.7 109 8-126 257-366 (500)
472 PRK10416 signal recognition pa 98.6 2.9E-07 6.4E-12 80.7 9.9 89 7-99 112-208 (318)
473 PHA02562 46 endonuclease subun 98.6 5.6E-08 1.2E-12 91.0 5.7 65 69-134 468-548 (562)
474 TIGR00606 rad50 rad50. This fa 98.6 7.1E-08 1.5E-12 98.6 6.7 65 68-132 1198-1280(1311)
475 PRK04296 thymidine kinase; Pro 98.6 5.4E-07 1.2E-11 73.3 10.3 110 9-122 2-116 (190)
476 PF00488 MutS_V: MutS domain V 98.6 5E-07 1.1E-11 76.0 10.0 107 10-126 44-170 (235)
477 PRK14722 flhF flagellar biosyn 98.5 1.6E-07 3.4E-12 83.8 6.7 90 4-99 132-227 (374)
478 PRK10246 exonuclease subunit S 98.5 1.3E-07 2.9E-12 94.6 6.8 67 67-133 947-1028(1047)
479 PRK06835 DNA replication prote 98.5 5.8E-07 1.3E-11 79.1 9.1 128 8-150 182-319 (329)
480 TIGR03881 KaiC_arch_4 KaiC dom 98.5 1.2E-06 2.7E-11 72.8 10.3 39 5-45 16-55 (229)
481 PF01695 IstB_IS21: IstB-like 98.5 4.6E-07 1E-11 73.0 6.9 41 4-45 42-82 (178)
482 PRK03918 chromosome segregatio 98.5 4.9E-07 1.1E-11 89.0 8.4 66 68-134 787-865 (880)
483 PLN03210 Resistant to P. syrin 98.5 8.7E-07 1.9E-11 89.7 10.1 125 6-133 204-346 (1153)
484 TIGR03238 dnd_assoc_3 dnd syst 98.4 1.9E-07 4.1E-12 85.1 4.7 39 3-43 26-64 (504)
485 TIGR02655 circ_KaiC circadian 98.4 1.4E-07 3E-12 87.2 3.6 29 6-34 18-48 (484)
486 COG5008 PilU Tfp pilus assembl 98.4 1.1E-06 2.4E-11 74.4 7.9 122 6-133 124-245 (375)
487 cd00820 PEPCK_HprK Phosphoenol 98.4 2.1E-07 4.5E-12 68.8 3.2 27 4-30 10-36 (107)
488 TIGR03880 KaiC_arch_3 KaiC dom 98.4 3.1E-06 6.8E-11 70.2 10.7 41 5-46 12-52 (224)
489 PTZ00035 Rad51 protein; Provis 98.4 3.6E-06 7.8E-11 74.4 11.4 42 6-47 115-161 (337)
490 TIGR00235 udk uridine kinase. 98.4 2.6E-07 5.6E-12 76.0 3.9 29 7-35 4-32 (207)
491 PRK14721 flhF flagellar biosyn 98.4 1.2E-06 2.7E-11 79.3 8.3 90 5-98 187-280 (420)
492 PRK14088 dnaA chromosomal repl 98.4 8.5E-07 1.8E-11 81.1 7.3 123 11-149 132-264 (440)
493 COG1618 Predicted nucleotide k 98.4 1.7E-06 3.7E-11 68.1 7.7 114 8-123 4-141 (179)
494 PRK01156 chromosome segregatio 98.4 8.9E-07 1.9E-11 87.5 7.6 66 68-134 800-881 (895)
495 PF13555 AAA_29: P-loop contai 98.4 3.9E-07 8.4E-12 60.6 3.4 29 8-36 22-50 (62)
496 PRK13830 conjugal transfer pro 98.4 3.8E-06 8.3E-11 82.3 11.8 43 84-126 649-699 (818)
497 PRK06526 transposase; Provisio 98.4 2.1E-07 4.6E-12 79.1 2.6 39 4-43 93-131 (254)
498 PRK09825 idnK D-gluconate kina 98.3 3.8E-07 8.2E-12 73.3 3.7 28 8-35 2-29 (176)
499 PTZ00454 26S protease regulato 98.3 2.5E-06 5.4E-11 77.0 9.3 100 6-124 176-296 (398)
500 PF03266 NTPase_1: NTPase; In 98.3 3.6E-06 7.7E-11 67.2 9.1 51 80-131 89-147 (168)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-35 Score=236.49 Aligned_cols=159 Identities=15% Similarity=0.252 Sum_probs=123.0
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-----------ccc----CCCCcccch------
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-----------EIG----GDGDIPHSA------ 60 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-----------~~~----~~~~~~~~~------ 60 (224)
|.-.|++||+++|+||+|||||||||||+++..++ +|.|.+.++.. .++ ....+|+..
T Consensus 21 i~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~-~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~ 99 (240)
T COG1126 21 ISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD-SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVT 99 (240)
T ss_pred cceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC-CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHH
Confidence 34578999999999999999999999999999998 68777643211 011 112233321
Q ss_pred ------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 61 ------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 61 ------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
....+++++ .|||||||++|||||+.+|+++++|||||.||++. +
T Consensus 100 lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm 179 (240)
T COG1126 100 LAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVM 179 (240)
T ss_pred hhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHH
Confidence 011234444 37999999999999999999999999999999865 4
Q ss_pred HHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027392 106 RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 106 ~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
++++++|.|.|++||.+.++..++||++ ++++|.++..++++..+..+......+|
T Consensus 180 ~~LA~eGmTMivVTHEM~FAr~Vadrvi--Fmd~G~iie~g~p~~~f~~p~~~R~~~F 235 (240)
T COG1126 180 KDLAEEGMTMIIVTHEMGFAREVADRVI--FMDQGKIIEEGPPEEFFDNPKSERTRQF 235 (240)
T ss_pred HHHHHcCCeEEEEechhHHHHHhhheEE--EeeCCEEEEecCHHHHhcCCCCHHHHHH
Confidence 5678899999999999999999999998 6677888888999998877654443333
No 2
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-33 Score=225.50 Aligned_cols=154 Identities=21% Similarity=0.255 Sum_probs=117.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC---------CcccCC----C-----Ccccch--hh
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS---------NEIGGD----G-----DIPHSA--IG 62 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~---------~~~~~~----~-----~~~~~~--~~ 62 (224)
+-+++.|++++|+|||||||||+||+|++++.|+ +|.+.+..-+ ..++.. + ...++. ++
T Consensus 22 SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~-~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa 100 (245)
T COG4555 22 SFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD-SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFA 100 (245)
T ss_pred eEEeccceEEEEEcCCCCCchhHHHHHHHhccCC-CceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHH
Confidence 4478999999999999999999999999999998 6777653211 011100 0 000000 00
Q ss_pred --------------------------HHhHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH
Q 027392 63 --------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA 109 (224)
Q Consensus 63 --------------------------~~~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~ 109 (224)
..++++-.|.||+||+++|||++++|+++++|||++|||... +.+++
T Consensus 101 ~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k 180 (245)
T COG4555 101 RLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK 180 (245)
T ss_pred HHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh
Confidence 012333457899999999999999999999999999999543 45567
Q ss_pred HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHH
Q 027392 110 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSI 159 (224)
Q Consensus 110 ~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~ 159 (224)
+.|.+||++||.+++++.+||+++ +++.|.+|+.|+++.+..+...+.
T Consensus 181 ~egr~viFSSH~m~EvealCDrvi--vlh~Gevv~~gs~~~l~~r~~~~~ 228 (245)
T COG4555 181 NEGRAVIFSSHIMQEVEALCDRVI--VLHKGEVVLEGSIEALDARTVLRN 228 (245)
T ss_pred cCCcEEEEecccHHHHHHhhheEE--EEecCcEEEcCCHHHHHHHHhhcC
Confidence 779999999999999999999997 778899999999988776654443
No 3
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.7e-33 Score=234.07 Aligned_cols=158 Identities=18% Similarity=0.252 Sum_probs=118.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccC---------CC
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGG---------DG 54 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~---------~~ 54 (224)
+-.+++|++++|+||||||||||||+|+|+++|. .|.|.+ ++|.....+ .+
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~-~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~G 100 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK-SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLG 100 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhc
Confidence 4478999999999999999999999999999987 455544 333322111 12
Q ss_pred Ccccchh-------------hHH----------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------H
Q 027392 55 DIPHSAI-------------GTA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------A 104 (224)
Q Consensus 55 ~~~~~~~-------------~~~----------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~ 104 (224)
.+|+... ... +.+.-.||||+||+.||+||+++|++|+|||||+.||.. .
T Consensus 101 R~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~l 180 (258)
T COG1120 101 RYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL 180 (258)
T ss_pred CCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHH
Confidence 2222110 001 223335799999999999999999999999999999943 4
Q ss_pred HHHHH-HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhcCC
Q 027392 105 CRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERKAP 165 (224)
Q Consensus 105 ~~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 165 (224)
++++. ++|.|+|++.||.+.+.++||+++ ++.+|+++..|+|++... .+.+.+-|+-
T Consensus 181 l~~l~~~~~~tvv~vlHDlN~A~ryad~~i--~lk~G~i~a~G~p~evlT--~e~l~~Vygv 238 (258)
T COG1120 181 LRDLNREKGLTVVMVLHDLNLAARYADHLI--LLKDGKIVAQGTPEEVLT--EENLREVYGV 238 (258)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEECCeEEeecCcchhcC--HHHHHHHhCC
Confidence 55666 569999999999999999999998 677788999999987653 3444444543
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=1.8e-31 Score=221.19 Aligned_cols=158 Identities=16% Similarity=0.220 Sum_probs=124.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC----------cccC----CCCcccchhh------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----------EIGG----DGDIPHSAIG------ 62 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~----------~~~~----~~~~~~~~~~------ 62 (224)
.-.|++||+++|+||+||||||+||+|++++.|+ .|.|.+.+.+- .++| .+.+|+....
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLiept-~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~V 99 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT-SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATV 99 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC-CceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhh
Confidence 3478999999999999999999999999999998 68888754321 1221 2334442110
Q ss_pred -----------------HHhHcCC------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 63 -----------------TARRMQV------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 63 -----------------~~~~~~~------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
....+++ .||||+||+.+||||+.+|++|+||||++.||+-. +.
T Consensus 100 P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~ 179 (309)
T COG1125 100 PKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIK 179 (309)
T ss_pred hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHH
Confidence 1122222 26999999999999999999999999999999532 33
Q ss_pred HHH-HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027392 107 SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 107 ~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
++. +.|+|||++|||++++-.++|++. ++++|+++++++|+.++..+..++...|
T Consensus 180 ~lq~~l~kTivfVTHDidEA~kLadri~--vm~~G~i~Q~~~P~~il~~Pan~FV~~f 235 (309)
T COG1125 180 ELQKELGKTIVFVTHDIDEALKLADRIA--VMDAGEIVQYDTPDEILANPANDFVEDF 235 (309)
T ss_pred HHHHHhCCEEEEEecCHHHHHhhhceEE--EecCCeEEEeCCHHHHHhCccHHHHHHH
Confidence 343 459999999999999999999997 6778999999999999988888877765
No 5
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=8.5e-32 Score=235.45 Aligned_cols=164 Identities=15% Similarity=0.184 Sum_probs=124.8
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------CCCcccCCCCcccchhh--
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------TSNEIGGDGDIPHSAIG-- 62 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------~~~~~~~~~~~~~~~~~-- 62 (224)
|+-.|++||++.|+||||||||||||+|||+..|+ +|.|.+.+ |+..+++...+.++...
T Consensus 24 isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~-~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGL 102 (352)
T COG3842 24 ISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS-SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGL 102 (352)
T ss_pred ceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhh
Confidence 34578999999999999999999999999999998 67666532 22222221111111100
Q ss_pred -----------------HHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH-------HHH
Q 027392 63 -----------------TARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSI 108 (224)
Q Consensus 63 -----------------~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~-------~~~ 108 (224)
..+.+++ .||||+||++|||||+.+|++|+||||.++||.+.. +++
T Consensus 103 k~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~l 182 (352)
T COG3842 103 KVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKEL 182 (352)
T ss_pred hhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHH
Confidence 1112222 269999999999999999999999999999996543 233
Q ss_pred -HHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc-CCCce
Q 027392 109 -AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK-APPTF 168 (224)
Q Consensus 109 -~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~ 168 (224)
++.|+|.|++|||.+++..++|++. ++++|++.+.|+|++++..+.......| +..++
T Consensus 183 q~~~giT~i~VTHDqeEAl~msDrI~--Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG~~N~ 242 (352)
T COG3842 183 QRELGITFVYVTHDQEEALAMSDRIA--VMNDGRIEQVGTPEEIYERPATRFVADFIGESNI 242 (352)
T ss_pred HHhcCCeEEEEECCHHHHhhhccceE--EccCCceeecCCHHHHhhCcchHHHHHHhCccee
Confidence 3559999999999999999999997 7788999999999999988877777766 55554
No 6
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.4e-31 Score=224.15 Aligned_cols=145 Identities=15% Similarity=0.239 Sum_probs=110.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE----------------EEcCCCcccCCCCcccc-------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV----------------IVDTSNEIGGDGDIPHS------- 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~----------------~~~~~~~~~~~~~~~~~------- 59 (224)
.-.|++|++++|+||||||||||+|+|.|+++|. .|.|. |++|...+.+ .+|-.
T Consensus 24 ~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~-~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~--~fP~tV~d~V~~ 100 (254)
T COG1121 24 SLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS-SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDR--SFPITVKDVVLL 100 (254)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC-cceEEEccccccccccCCeEEEcCcccccCC--CCCcCHHHHHHc
Confidence 3468999999999999999999999999999987 45444 4444322111 11110
Q ss_pred -------------------hhhHH----------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------
Q 027392 60 -------------------AIGTA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH------- 103 (224)
Q Consensus 60 -------------------~~~~~----------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~------- 103 (224)
..... ++++-.||||+||+.|||||+.+|++|+||||++++|..
T Consensus 101 g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~ 180 (254)
T COG1121 101 GRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD 180 (254)
T ss_pred cCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHH
Confidence 00111 233345899999999999999999999999999999953
Q ss_pred HHHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 104 ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 104 ~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
.+.+++++|+||+++|||...+..++|+++. |. .+++..|+++....
T Consensus 181 lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~-Ln--~~~~~~G~~~~~~~ 227 (254)
T COG1121 181 LLKELRQEGKTVLMVTHDLGLVMAYFDRVIC-LN--RHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHHHCCCEEEEEeCCcHHhHhhCCEEEE-Ec--CeeEeccChhhccC
Confidence 4667787799999999999999999999974 43 34688888887653
No 7
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.6e-31 Score=230.40 Aligned_cols=161 Identities=17% Similarity=0.239 Sum_probs=122.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC--------Cccc----CCCCcccch-----h----
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS--------NEIG----GDGDIPHSA-----I---- 61 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~--------~~~~----~~~~~~~~~-----~---- 61 (224)
.-.|+.||+++|+||||||||||||+|||+..|+ +|.|.+-+.. ..++ ....+|+.. .
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~-~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk 101 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT-SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLK 101 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhh
Confidence 3478999999999999999999999999999998 6777653221 0111 112233311 0
Q ss_pred --------------hHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH
Q 027392 62 --------------GTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE 110 (224)
Q Consensus 62 --------------~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~ 110 (224)
..++.+++ .||||+||+++|||++.+|++++||||.++||.+. ++++.+
T Consensus 102 ~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~ 181 (338)
T COG3839 102 LRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE 181 (338)
T ss_pred hCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHH
Confidence 01122222 37999999999999999999999999999999654 334443
Q ss_pred -cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc-CCC
Q 027392 111 -RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK-APP 166 (224)
Q Consensus 111 -~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~ 166 (224)
.+.|+|++|||..++..++|++. ++++|++.+.|+|..++..+.......| +.|
T Consensus 182 ~l~~T~IYVTHDq~EAmtladri~--Vm~~G~i~Q~g~p~ely~~P~n~fVA~FiG~p 237 (338)
T COG3839 182 RLGTTTIYVTHDQVEAMTLADRIV--VMNDGRIQQVGTPLELYERPANLFVAGFIGSP 237 (338)
T ss_pred hcCCcEEEEcCCHHHHHhhCCEEE--EEeCCeeeecCChHHHhhCccchhhhhhcCCh
Confidence 48899999999999999999997 4557889999999999988877776666 443
No 8
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.6e-31 Score=224.05 Aligned_cols=159 Identities=16% Similarity=0.184 Sum_probs=122.6
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC-------------CcccCC---------CCcccc
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-------------NEIGGD---------GDIPHS 59 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~-------------~~~~~~---------~~~~~~ 59 (224)
|+-.|++|+++||+|.+|||||||+|+++++-.|+ .|+|.+.+++ ..++.. ..+.++
T Consensus 25 vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt-sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~N 103 (339)
T COG1135 25 VSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT-SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFEN 103 (339)
T ss_pred ceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC-CceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhh
Confidence 45579999999999999999999999999999998 6887765421 011110 011111
Q ss_pred h------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------
Q 027392 60 A------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------- 104 (224)
Q Consensus 60 ~------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------- 104 (224)
. ....+.+++ .|||||||++|||||+.+|++|+.|||||.||++.
T Consensus 104 vA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~L 183 (339)
T COG1135 104 VAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILEL 183 (339)
T ss_pred hhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHH
Confidence 0 011223333 26999999999999999999999999999999764
Q ss_pred HHHHH-HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027392 105 CRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 105 ~~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
++++. +.|.||+++||.|+....+||++. +++.|++|..|+...++..+...+..+|
T Consensus 184 L~~In~~lglTIvlITHEm~Vvk~ic~rVa--vm~~G~lvE~G~v~~vF~~Pk~~~t~~f 241 (339)
T COG1135 184 LKDINRELGLTIVLITHEMEVVKRICDRVA--VLDQGRLVEEGTVSEVFANPKHAITQEF 241 (339)
T ss_pred HHHHHHHcCCEEEEEechHHHHHHHhhhhe--EeeCCEEEEeccHHHhhcCcchHHHHHH
Confidence 23333 559999999999999999999997 6777899999999999988877777665
No 9
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=216.64 Aligned_cols=130 Identities=15% Similarity=0.160 Sum_probs=97.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc--------------CCCcccCCCCcccc----------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD--------------TSNEIGGDGDIPHS---------- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~--------------~~~~~~~~~~~~~~---------- 59 (224)
-.|.+||+++|+||+|||||||||+|+|+..|+ .|.|.+.+ |...+.+...+.++
T Consensus 24 L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~-~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~ 102 (248)
T COG1116 24 LSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT-SGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGK 102 (248)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhcccc
Confidence 478999999999999999999999999999998 56655432 22221111111111
Q ss_pred --------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H-HHHHHcCC
Q 027392 60 --------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C-RSIAERGV 113 (224)
Q Consensus 60 --------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~-~~~~~~g~ 113 (224)
.....+.+++ .|||||||++||||++.+|++|+||||++.||... + +-+.+.++
T Consensus 103 ~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~ 182 (248)
T COG1116 103 SKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRK 182 (248)
T ss_pred chHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCC
Confidence 0111233443 27999999999999999999999999999999532 2 22356789
Q ss_pred EEEEEEeCcchHHhhccceee
Q 027392 114 MLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 114 tvi~~tH~~~~~~~~~d~v~~ 134 (224)
||+++|||.+++-.++||++.
T Consensus 183 TvllVTHdi~EAv~LsdRivv 203 (248)
T COG1116 183 TVLLVTHDVDEAVYLADRVVV 203 (248)
T ss_pred EEEEEeCCHHHHHhhhCEEEE
Confidence 999999999999999999974
No 10
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.5e-30 Score=224.90 Aligned_cols=147 Identities=18% Similarity=0.259 Sum_probs=111.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC---------cccCCCC----ccc-----------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN---------EIGGDGD----IPH----------- 58 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~---------~~~~~~~----~~~----------- 58 (224)
+-.+++|++++|+||||||||||+|+|+|++.|+ +|.|.+.+.+. .+++... ++.
T Consensus 25 s~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~-~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~ 103 (293)
T COG1131 25 SFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT-SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFA 103 (293)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHH
Confidence 4478999999999999999999999999999997 67777654221 1111100 000
Q ss_pred ------------chhhHHhHc----------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH
Q 027392 59 ------------SAIGTARRM----------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA 109 (224)
Q Consensus 59 ------------~~~~~~~~~----------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~ 109 (224)
......+.+ .-.|+|||||+.||.||+++|++|||||||+|||+.. +++++
T Consensus 104 ~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~ 183 (293)
T COG1131 104 RLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELA 183 (293)
T ss_pred HHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHH
Confidence 000011222 2247999999999999999999999999999999653 45566
Q ss_pred HcC-CEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 110 ERG-VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 110 ~~g-~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++| .||++|||.+++++.+||+++ ++++|+++..++.+...
T Consensus 184 ~~g~~tvlissH~l~e~~~~~d~v~--il~~G~~~~~g~~~~l~ 225 (293)
T COG1131 184 KEGGVTILLSTHILEEAEELCDRVI--ILNDGKIIAEGTPEELK 225 (293)
T ss_pred hCCCcEEEEeCCcHHHHHHhCCEEE--EEeCCEEEEeCCHHHHH
Confidence 776 799999999999999999997 67778899988777643
No 11
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=2.6e-30 Score=212.75 Aligned_cols=155 Identities=15% Similarity=0.200 Sum_probs=117.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC----------------------CcccCCCCcccch-
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS----------------------NEIGGDGDIPHSA- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~----------------------~~~~~~~~~~~~~- 60 (224)
-.|++||+++|+||+|||||||||+|.|+++|+ .|.|.+...+ ..++....+.++.
T Consensus 29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~-~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVa 107 (263)
T COG1127 29 LDVPRGEILAILGGSGSGKSTLLRLILGLLRPD-KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVA 107 (263)
T ss_pred eeecCCcEEEEECCCCcCHHHHHHHHhccCCCC-CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhh
Confidence 368999999999999999999999999999998 6887765432 1111111111111
Q ss_pred -------------h-----hHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhH-------HH
Q 027392 61 -------------I-----GTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HA 104 (224)
Q Consensus 61 -------------~-----~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~-------~~ 104 (224)
+ ...+.+++ .||||++|++||||++.+|++|++||||+|||+ +.
T Consensus 108 fplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~L 187 (263)
T COG1127 108 FPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDEL 187 (263)
T ss_pred eehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHH
Confidence 0 01122222 269999999999999999999999999999994 34
Q ss_pred HHHHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHh
Q 027392 105 CRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILE 161 (224)
Q Consensus 105 ~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~ 161 (224)
+.++++. |.|++++|||++....+||+++ ++.+++++..|++++.......-+++
T Consensus 188 I~~L~~~lg~T~i~VTHDl~s~~~i~Drv~--~L~~gkv~~~Gt~~el~~sd~P~v~q 243 (263)
T COG1127 188 IRELNDALGLTVIMVTHDLDSLLTIADRVA--VLADGKVIAEGTPEELLASDDPWVRQ 243 (263)
T ss_pred HHHHHHhhCCEEEEEECChHHHHhhhceEE--EEeCCEEEEeCCHHHHHhCCCHHHHH
Confidence 5566644 8999999999999999999997 66778899999999877544444444
No 12
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.97 E-value=2.5e-30 Score=224.89 Aligned_cols=147 Identities=16% Similarity=0.217 Sum_probs=109.8
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE------------------cCCCcccCCCCcccchh---
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV------------------DTSNEIGGDGDIPHSAI--- 61 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~------------------~~~~~~~~~~~~~~~~~--- 61 (224)
+-.|++|++++|+||||||||||+|+|+|+++|+ .|.+.+. .+...+.......++..
T Consensus 27 sl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~-~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~ 105 (306)
T PRK13537 27 SFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD-AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFG 105 (306)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHH
Confidence 3468999999999999999999999999999987 5665543 22211111100000000
Q ss_pred ---------------hHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH
Q 027392 62 ---------------GTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA 109 (224)
Q Consensus 62 ---------------~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~ 109 (224)
...+.+++ .|+||+||++||+|++++|++|||||||++||+.. +++++
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~ 185 (306)
T PRK13537 106 RYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL 185 (306)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 01122222 36999999999999999999999999999999653 44556
Q ss_pred HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 110 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 110 ~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++|.|||++||++++++.+||+++ ++++|+++..++++...
T Consensus 186 ~~g~till~sH~l~e~~~~~d~i~--il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 186 ARGKTILLTTHFMEEAERLCDRLC--VIEEGRKIAEGAPHALI 226 (306)
T ss_pred hCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEECCHHHHH
Confidence 678999999999999999999997 55667888898887754
No 13
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.6e-30 Score=213.25 Aligned_cols=150 Identities=17% Similarity=0.234 Sum_probs=113.3
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc-----------ccCC------CCcccc-----
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-----------IGGD------GDIPHS----- 59 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~-----------~~~~------~~~~~~----- 59 (224)
|+-.+.+||+++|+|++|||||||+|+|+|+.+|+ .|.|.+.+.... +... ..-|..
T Consensus 26 VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~-~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~ 104 (252)
T COG1124 26 VSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS-SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRI 104 (252)
T ss_pred eeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC-CceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHH
Confidence 45578999999999999999999999999999998 677776442100 0000 000000
Q ss_pred ----------------hhhHHhHcCCC-----------CccHHHHHHHHHHHhcCCCEEEEeCCCChHhH-------HHH
Q 027392 60 ----------------AIGTARRMQVP-----------EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HAC 105 (224)
Q Consensus 60 ----------------~~~~~~~~~~~-----------~~g~~qr~~la~al~~~p~llilDEp~~~lD~-------~~~ 105 (224)
.....+.++++ ||||+||++|||||..+|++||+||||++||. +.+
T Consensus 105 l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL 184 (252)
T COG1124 105 LSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLL 184 (252)
T ss_pred HhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHH
Confidence 11122334442 69999999999999999999999999999994 344
Q ss_pred HHHH-HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHH
Q 027392 106 RSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 154 (224)
Q Consensus 106 ~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~ 154 (224)
.+++ +.+.|+|++|||...++.+|||++ ++..|++|...+...+...
T Consensus 185 ~~l~~~~~lt~l~IsHdl~~v~~~cdRi~--Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 185 LELKKERGLTYLFISHDLALVEHMCDRIA--VMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHHHhcCceEEEEeCcHHHHHHHhhhee--eeeCCeEEEeechhhhhcC
Confidence 5555 458999999999999999999997 6777889998777776544
No 14
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-30 Score=220.54 Aligned_cols=158 Identities=17% Similarity=0.236 Sum_probs=119.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC---C--------CcccC----CCCccc-----chhh
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT---S--------NEIGG----DGDIPH-----SAIG 62 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~---~--------~~~~~----~~~~~~-----~~~~ 62 (224)
.-.|+.||.++|+||||||||||||+|||+..|+ .|+|.+.++ + ..+++ ...+++ ++..
T Consensus 22 ~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~-~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAF 100 (345)
T COG1118 22 SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD-AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAF 100 (345)
T ss_pred eeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC-CceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhh
Confidence 3468999999999999999999999999999998 677765432 1 01111 011111 1100
Q ss_pred --------------------HHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH------
Q 027392 63 --------------------TARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------ 106 (224)
Q Consensus 63 --------------------~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~------ 106 (224)
..+.+++ .||||+||+++||||+..|++|+||||++.||.+..+
T Consensus 101 Gl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wL 180 (345)
T COG1118 101 GLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWL 180 (345)
T ss_pred cccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHH
Confidence 0111111 2699999999999999999999999999999976543
Q ss_pred -HHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027392 107 -SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 107 -~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
++.++ |.|.+++|||.+++..+||+++ .+.+|++...+++++++..+......+|
T Consensus 181 r~~~~~~~~ttvfVTHD~eea~~ladrvv--vl~~G~Ieqvg~p~ev~~~P~s~fV~~f 237 (345)
T COG1118 181 RKLHDRLGVTTVFVTHDQEEALELADRVV--VLNQGRIEQVGPPDEVYDHPASRFVARF 237 (345)
T ss_pred HHHHHhhCceEEEEeCCHHHHHhhcceEE--EecCCeeeeeCCHHHHhcCCCccceecc
Confidence 34444 9999999999999999999998 5667889999999999988777666655
No 15
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.7e-30 Score=214.25 Aligned_cols=148 Identities=24% Similarity=0.257 Sum_probs=116.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC------CcccCC----CCccc-----chh------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS------NEIGGD----GDIPH-----SAI------ 61 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~------~~~~~~----~~~~~-----~~~------ 61 (224)
+-.+++|+++|++|||||||||++|+|.|++.|+ .|.|.+.++. +.+++. +.++. +..
T Consensus 22 sf~v~~G~i~GllG~NGAGKTTtfRmILglle~~-~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk 100 (300)
T COG4152 22 SFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT-EGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELK 100 (300)
T ss_pred eeeecCCeEEEeecCCCCCccchHHHHhccCCcc-CceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhc
Confidence 4468999999999999999999999999999998 6888876532 123321 11111 110
Q ss_pred ------------hHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhH-------HHHHHHHHcC
Q 027392 62 ------------GTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERG 112 (224)
Q Consensus 62 ------------~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~-------~~~~~~~~~g 112 (224)
...+++.+ .|.|++|++++..+++|+|+++|||||+||||+ +.+.+++++|
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 01233333 368999999999999999999999999999994 2455778999
Q ss_pred CEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 113 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 113 ~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
.|||+|||.|+.++.+||+++ ++++|+.|..|+-..+.+
T Consensus 181 atIifSsH~Me~vEeLCD~ll--mL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 181 ATIIFSSHRMEHVEELCDRLL--MLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CEEEEecchHHHHHHHhhhhh--eecCCceEEeccHHHHHH
Confidence 999999999999999999997 777788999998877654
No 16
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.2e-30 Score=213.25 Aligned_cols=149 Identities=15% Similarity=0.202 Sum_probs=110.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE--------------------cCCCcccCC-CCcccc--
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV--------------------DTSNEIGGD-GDIPHS-- 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~--------------------~~~~~~~~~-~~~~~~-- 59 (224)
+-.+++|+.++|+|+||||||||+++++|++.|+ .|.|.+. .|+++.+.. ..+.+.
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~-~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~eva 102 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT-SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVA 102 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC-CCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHh
Confidence 4578999999999999999999999999999998 5666332 121111000 000000
Q ss_pred ------------h----hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 60 ------------A----IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 60 ------------~----~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
. ....+.+++ .|+||+||++||.+|+.+|++|||||||++||+.. ++
T Consensus 103 fg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~ 182 (235)
T COG1122 103 FGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182 (235)
T ss_pred hchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 0 001122222 37999999999999999999999999999999653 45
Q ss_pred HHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHH
Q 027392 107 SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 154 (224)
Q Consensus 107 ~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~ 154 (224)
+++++ |+|+|++||+++....+||+++ ++.+|+++..|++..++..
T Consensus 183 ~L~~~~~~tii~~tHd~~~~~~~ad~v~--vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 183 KLKEEGGKTIIIVTHDLELVLEYADRVV--VLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHhcCCCeEEEEeCcHHHHHhhCCEEE--EEECCEEeecCCHHHHhhh
Confidence 56656 6899999999999999999998 5566788888888776643
No 17
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.6e-29 Score=223.96 Aligned_cols=157 Identities=14% Similarity=0.160 Sum_probs=115.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-----------------cCCCcccCCCCcccch------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-----------------DTSNEIGGDGDIPHSA------ 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~~------ 60 (224)
-.+++|++++|+||||||||||||+|+|+.+|+ .|.|.+. .|...++....+.++.
T Consensus 25 l~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~-~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~ 103 (356)
T PRK11650 25 LDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT-SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKI 103 (356)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC-ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhh
Confidence 468899999999999999999999999999987 5665542 2222221111111110
Q ss_pred ------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-
Q 027392 61 ------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE- 110 (224)
Q Consensus 61 ------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~- 110 (224)
....+.+++ .|+||+||++|||||+.+|++||||||+++||... ++++.+
T Consensus 104 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~ 183 (356)
T PRK11650 104 RGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR 183 (356)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 001122232 37999999999999999999999999999999543 344444
Q ss_pred cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027392 111 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 111 ~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
.|.|+|++||+..++..+||+++ ++.+|+++..++++.++..+......+|
T Consensus 184 ~g~tii~vTHd~~ea~~l~D~i~--vl~~G~i~~~g~~~~~~~~p~~~~~~~~ 234 (356)
T PRK11650 184 LKTTSLYVTHDQVEAMTLADRVV--VMNGGVAEQIGTPVEVYEKPASTFVASF 234 (356)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEE--EEeCCEEEEECCHHHHHhCCccHHHHHH
Confidence 48999999999999999999997 5577889999999988776654444444
No 18
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.96 E-value=1.6e-29 Score=219.51 Aligned_cols=147 Identities=20% Similarity=0.224 Sum_probs=109.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC---------cccCC---------CCcccch----
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN---------EIGGD---------GDIPHSA---- 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~---------~~~~~---------~~~~~~~---- 60 (224)
+-.|++|++++|+||||||||||+|+|+|+++|+ .|.|.+.+.+. .+++. ....++.
T Consensus 13 s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 91 (302)
T TIGR01188 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT-SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMG 91 (302)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHH
Confidence 3478999999999999999999999999999988 57666532110 01110 0000000
Q ss_pred --------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH
Q 027392 61 --------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA 109 (224)
Q Consensus 61 --------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~ 109 (224)
....+.+++ .|+||+||++||+|++++|++|||||||++||+.. +++++
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 171 (302)
T TIGR01188 92 RLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK 171 (302)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 001122232 36999999999999999999999999999999653 44555
Q ss_pred HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 110 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 110 ~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++|.|||++||+++++..+||+++ ++++|+++..++++...
T Consensus 172 ~~g~tvi~~sH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~l~ 212 (302)
T TIGR01188 172 EEGVTILLTTHYMEEADKLCDRIA--IIDHGRIIAEGTPEELK 212 (302)
T ss_pred hCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEECCHHHHH
Confidence 668999999999999999999997 55667888888877654
No 19
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.6e-29 Score=223.43 Aligned_cols=157 Identities=15% Similarity=0.193 Sum_probs=116.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-----------------cCCCcccCCCCcccchh-----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-----------------DTSNEIGGDGDIPHSAI----- 61 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~~~----- 61 (224)
-.+++||+++|+||||||||||||+|+|+.+|+ .|.|.+. .|...++....+.++..
T Consensus 27 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~ 105 (351)
T PRK11432 27 LTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT-EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKM 105 (351)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC-ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhH
Confidence 468999999999999999999999999999988 5665542 22221111111111100
Q ss_pred -------------hHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-
Q 027392 62 -------------GTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE- 110 (224)
Q Consensus 62 -------------~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~- 110 (224)
...+.+++ .|+||+||++|||||+.+|++|+||||+++||... ++++.+
T Consensus 106 ~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 185 (351)
T PRK11432 106 LGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ 185 (351)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 01122222 37999999999999999999999999999999654 334443
Q ss_pred cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027392 111 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 111 ~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
.|.|+|++||+.+++..+||+++ ++.+|+++..++++..+..+......+|
T Consensus 186 ~g~tii~vTHd~~e~~~laD~i~--vm~~G~i~~~g~~~~~~~~p~~~~~a~~ 236 (351)
T PRK11432 186 FNITSLYVTHDQSEAFAVSDTVI--VMNKGKIMQIGSPQELYRQPASRFMASF 236 (351)
T ss_pred cCCEEEEEcCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCCCchHHHHh
Confidence 48999999999999999999997 5566889999999988877665555554
No 20
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.96 E-value=1.8e-29 Score=222.39 Aligned_cols=148 Identities=16% Similarity=0.219 Sum_probs=110.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc------------------CCCcccCCCCcccch----
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD------------------TSNEIGGDGDIPHSA---- 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~------------------~~~~~~~~~~~~~~~---- 60 (224)
+-.|++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+.......++.
T Consensus 61 s~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~-~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~ 139 (340)
T PRK13536 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPD-AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFG 139 (340)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHH
Confidence 3468999999999999999999999999999987 56665432 211111100000000
Q ss_pred --------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH
Q 027392 61 --------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA 109 (224)
Q Consensus 61 --------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~ 109 (224)
....+.+++ .|+||+||++||+|++++|++|||||||++||+.. +.+++
T Consensus 140 ~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~ 219 (340)
T PRK13536 140 RYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 219 (340)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 001122232 36999999999999999999999999999999653 44556
Q ss_pred HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 110 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 110 ~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
++|.|||++||++++++.+||+++ ++++|+++..++++....
T Consensus 220 ~~g~tilisSH~l~e~~~~~d~i~--il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 220 ARGKTILLTTHFMEEAERLCDRLC--VLEAGRKIAEGRPHALID 261 (340)
T ss_pred hCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHh
Confidence 678999999999999999999997 556678898988887643
No 21
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.96 E-value=2.4e-29 Score=221.62 Aligned_cols=149 Identities=14% Similarity=0.169 Sum_probs=110.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC----------------------CCcccCCCCcccch-
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT----------------------SNEIGGDGDIPHSA- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~----------------------~~~~~~~~~~~~~~- 60 (224)
-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+.+. ...+.....+.++.
T Consensus 26 l~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~-~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~ 104 (343)
T TIGR02314 26 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVA 104 (343)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHH
Confidence 468999999999999999999999999999987 566655321 11111000000000
Q ss_pred -----------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 61 -----------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 61 -----------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
....+.+++ .|+||+||++||+||+.+|++||+||||++||+.. ++
T Consensus 105 ~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~ 184 (343)
T TIGR02314 105 LPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLK 184 (343)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 011223333 36999999999999999999999999999999653 44
Q ss_pred HHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHh
Q 027392 107 SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 155 (224)
Q Consensus 107 ~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~ 155 (224)
+++++ |.|||++||+++.+..+||+++ ++.+|+++..+++...+..+
T Consensus 185 ~l~~~~g~tiiliTH~~~~v~~~~d~v~--vl~~G~iv~~g~~~~v~~~p 232 (343)
T TIGR02314 185 EINRRLGLTILLITHEMDVVKRICDCVA--VISNGELIEQGTVSEIFSHP 232 (343)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHcCC
Confidence 45543 8999999999999999999997 55678889998888776543
No 22
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.96 E-value=2.2e-29 Score=223.38 Aligned_cols=155 Identities=15% Similarity=0.211 Sum_probs=114.1
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCC--CeEEEE-----------------cCCCcccCCCCcccch----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--KRVVIV-----------------DTSNEIGGDGDIPHSA---- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~--~~i~~~-----------------~~~~~~~~~~~~~~~~---- 60 (224)
-.+++|++++|+||||||||||||+|+|+.+|+ . |.|.+. .|...++....+.++.
T Consensus 26 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~-~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l 104 (362)
T TIGR03258 26 LEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGL 104 (362)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHH
Confidence 368899999999999999999999999999987 5 665542 2222111110111100
Q ss_pred --------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH
Q 027392 61 --------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA 109 (224)
Q Consensus 61 --------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~ 109 (224)
....+.+++ .|+||+||++||+||+.+|++|+||||+++||... ++++.
T Consensus 105 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~ 184 (362)
T TIGR03258 105 RAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH 184 (362)
T ss_pred HHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 001222333 36999999999999999999999999999999653 33445
Q ss_pred Hc--CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHh
Q 027392 110 ER--GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILE 161 (224)
Q Consensus 110 ~~--g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~ 161 (224)
++ |.|+|++||+.+++..+||+++ ++.+|+++..++++.++..+......
T Consensus 185 ~~~~g~til~vTHd~~ea~~l~dri~--vl~~G~i~~~g~~~~~~~~p~~~~~a 236 (362)
T TIGR03258 185 EELPELTILCVTHDQDDALTLADKAG--IMKDGRLAAHGEPQALYDAPADGFAA 236 (362)
T ss_pred HhCCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCcCcHHHH
Confidence 44 7899999999999999999997 55668899999999888765433333
No 23
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.3e-29 Score=205.33 Aligned_cols=157 Identities=14% Similarity=0.098 Sum_probs=112.9
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccC----CCeEEEEc---------------------CCCcccCCCCcc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF----QKRVVIVD---------------------TSNEIGGDGDIP 57 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~----~~~i~~~~---------------------~~~~~~~~~~~~ 57 (224)
.-.|+++++++|+||+|||||||||+++++..... .|.|.+.+ |.+..+.. .+.
T Consensus 27 ~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~-SIy 105 (253)
T COG1117 27 NLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPM-SIY 105 (253)
T ss_pred ceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCc-hHH
Confidence 34689999999999999999999999999875431 24444432 21111110 000
Q ss_pred cchhh------------------H----------HhHc----CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH--
Q 027392 58 HSAIG------------------T----------ARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-- 103 (224)
Q Consensus 58 ~~~~~------------------~----------~~~~----~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-- 103 (224)
++... . -.++ --.||||+||++||||++.+|++|+|||||++||+-
T Consensus 106 dNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT 185 (253)
T COG1117 106 DNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIST 185 (253)
T ss_pred HHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhH
Confidence 00000 0 0111 113799999999999999999999999999999953
Q ss_pred -----HHHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027392 104 -----ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 104 -----~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
.+.+++ +.-|||++||+|..+.+++|+.. +...|++|++++.+.++..+..+..+.+
T Consensus 186 ~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~ta--Ff~~G~LvE~g~T~~iF~~P~~~~TedY 247 (253)
T COG1117 186 LKIEELITELK-KKYTIVIVTHNMQQAARVSDYTA--FFYLGELVEFGPTDKIFTNPKHKRTEDY 247 (253)
T ss_pred HHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhh--hhcccEEEEEcCHHhhhcCccHHHHHHH
Confidence 344555 45899999999999999999985 4445789999999999988877766654
No 24
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.96 E-value=2.8e-29 Score=222.18 Aligned_cols=157 Identities=16% Similarity=0.160 Sum_probs=115.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-----------------cCCCcccCCCCcccchh-----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-----------------DTSNEIGGDGDIPHSAI----- 61 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~~~----- 61 (224)
-.+++|++++|+||||||||||||+|+|+.+|+ .|.|.+. .|+..++....+.++..
T Consensus 25 ~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~-~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~ 103 (353)
T TIGR03265 25 LSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT-AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKN 103 (353)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC-ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHh
Confidence 368899999999999999999999999999987 5666542 22222211111111110
Q ss_pred -------------hHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-
Q 027392 62 -------------GTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE- 110 (224)
Q Consensus 62 -------------~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~- 110 (224)
...+.+++ .|+||+||++|||||+.+|++|+||||+++||... ++++.+
T Consensus 104 ~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~ 183 (353)
T TIGR03265 104 RGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR 183 (353)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 01222332 36999999999999999999999999999999643 334443
Q ss_pred cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027392 111 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 111 ~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
.+.|+|++||+.+++..+||+++ ++.+|+++..++++..+..+......+|
T Consensus 184 ~~~tvi~vTHd~~ea~~l~d~i~--vl~~G~i~~~g~~~~~~~~p~~~~~a~~ 234 (353)
T TIGR03265 184 LGVTTIMVTHDQEEALSMADRIV--VMNHGVIEQVGTPQEIYRHPATPFVADF 234 (353)
T ss_pred cCCEEEEEcCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCCCCHHHHHh
Confidence 48999999999999999999997 5666889999999988876554444444
No 25
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.96 E-value=9.4e-29 Score=218.80 Aligned_cols=158 Identities=13% Similarity=0.132 Sum_probs=115.4
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-----------------cCCCcccCCCCcccc------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-----------------DTSNEIGGDGDIPHS------ 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~------ 59 (224)
+-.+++||+++|+||||||||||+|+|+|+++|+ .|.|.+. .|...+.....+.++
T Consensus 22 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~ 100 (353)
T PRK10851 22 SLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT-SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLT 100 (353)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhh
Confidence 3468999999999999999999999999999987 5666542 222111110000000
Q ss_pred ----------------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 60 ----------------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 60 ----------------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
.....+.+++ .|+||+||++||+||+.+|++||||||+++||... ++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~ 180 (353)
T PRK10851 101 VLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLR 180 (353)
T ss_pred hcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 0011222333 36999999999999999999999999999999643 34
Q ss_pred HHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027392 107 SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 107 ~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
++.++ |.|+|++||+.+++..+||+++ ++.+|+++..++++..+..+.......|
T Consensus 181 ~l~~~~g~tii~vTHd~~ea~~~~Dri~--vl~~G~i~~~g~~~~i~~~p~~~~~~~~ 236 (353)
T PRK10851 181 QLHEELKFTSVFVTHDQEEAMEVADRVV--VMSQGNIEQAGTPDQVWREPATRFVLEF 236 (353)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCccchHHHHh
Confidence 45544 8999999999999999999997 5566889999999988766544444443
No 26
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.6e-29 Score=220.32 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=114.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-----------------cCCCcccCCCCcccch------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-----------------DTSNEIGGDGDIPHSA------ 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~~------ 60 (224)
-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+. .|...+.....+.++.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~-~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~ 102 (369)
T PRK11000 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT-SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKL 102 (369)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhh
Confidence 468999999999999999999999999999987 5665542 2221111110100000
Q ss_pred ------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-
Q 027392 61 ------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE- 110 (224)
Q Consensus 61 ------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~- 110 (224)
....+.+++ .|+||+||++||+||+.+|++|||||||++||... ++++.+
T Consensus 103 ~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~ 182 (369)
T PRK11000 103 AGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182 (369)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 001122232 37999999999999999999999999999999653 344444
Q ss_pred cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027392 111 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 111 ~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
.|.|+|++||+.+++..+||+++ ++.+|+++..++++..+..+.......|
T Consensus 183 ~g~tvI~vTHd~~~~~~~~d~i~--vl~~G~i~~~g~~~~i~~~p~~~~~~~~ 233 (369)
T PRK11000 183 LGRTMIYVTHDQVEAMTLADKIV--VLDAGRVAQVGKPLELYHYPANRFVAGF 233 (369)
T ss_pred hCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCcccHHHHHh
Confidence 48999999999999999999997 5566888889999887765544444444
No 27
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.96 E-value=8.4e-29 Score=220.50 Aligned_cols=157 Identities=17% Similarity=0.215 Sum_probs=115.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-----------------cCCCcccCCCCcccch------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-----------------DTSNEIGGDGDIPHSA------ 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~~------ 60 (224)
-.+++|++++|+||||||||||||+|+|+.+|+ .|.|.+. .|+..++....+.++.
T Consensus 35 l~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~-~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~ 113 (375)
T PRK09452 35 LTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRM 113 (375)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhh
Confidence 468899999999999999999999999999987 5665542 2222221111111110
Q ss_pred ------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-
Q 027392 61 ------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE- 110 (224)
Q Consensus 61 ------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~- 110 (224)
....+.+++ .|+||+||++|||||+.+|++||||||+++||... ++++.+
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~ 193 (375)
T PRK09452 114 QKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRK 193 (375)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 001122222 36999999999999999999999999999999643 334444
Q ss_pred cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027392 111 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 111 ~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
.|.|+|++||+..++..+||+++ ++.+|+++..+++..++..+......+|
T Consensus 194 ~g~tiI~vTHd~~ea~~laDri~--vl~~G~i~~~g~~~~i~~~p~~~~~a~~ 244 (375)
T PRK09452 194 LGITFVFVTHDQEEALTMSDRIV--VMRDGRIEQDGTPREIYEEPKNLFVARF 244 (375)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCcccHHHHHh
Confidence 48999999999999999999997 5667889999999988876654444444
No 28
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.96 E-value=8.9e-29 Score=219.30 Aligned_cols=150 Identities=14% Similarity=0.191 Sum_probs=111.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------------CCCcccCCCCcccc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------------TSNEIGGDGDIPHS 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------------~~~~~~~~~~~~~~ 59 (224)
+-.|++||+++|+||||||||||+++|+|+++|+ .|.|.+.+ |...+.....+.++
T Consensus 13 s~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~-~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eN 91 (363)
T TIGR01186 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT-AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQN 91 (363)
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC-ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHH
Confidence 3468999999999999999999999999999987 56665432 21111111111111
Q ss_pred h------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------
Q 027392 60 A------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------- 104 (224)
Q Consensus 60 ~------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------- 104 (224)
. ....+.+++ .|+||+||++||+||+.+|++|||||||++||+..
T Consensus 92 i~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~ 171 (363)
T TIGR01186 92 TSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDE 171 (363)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 0 001222333 36999999999999999999999999999999653
Q ss_pred HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHh
Q 027392 105 CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 155 (224)
Q Consensus 105 ~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~ 155 (224)
+.++.+ .++|||++||+++++..+||+++ ++.+|+++..++++.+...+
T Consensus 172 l~~l~~~~~~Tii~vTHd~~ea~~~~drI~--vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 172 LKKLQATLQKTIVFITHDLDEAIRIGDRIV--IMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEeCCEEEeeCCHHHHHhCc
Confidence 334443 48999999999999999999997 55667899999988776544
No 29
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.96 E-value=9.4e-29 Score=214.75 Aligned_cols=147 Identities=16% Similarity=0.238 Sum_probs=107.9
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE------------------cCCCcccCCCCcccch----
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV------------------DTSNEIGGDGDIPHSA---- 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~------------------~~~~~~~~~~~~~~~~---- 60 (224)
+-.|++|++++|+||||||||||+++|+|+++|+ .|.+.+. .+...+.......++.
T Consensus 24 sl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 102 (303)
T TIGR01288 24 SFTIARGECFGLLGPNGAGKSTIARMLLGMISPD-RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFG 102 (303)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHH
Confidence 3468999999999999999999999999999887 5665542 2211111000000000
Q ss_pred --------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH
Q 027392 61 --------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA 109 (224)
Q Consensus 61 --------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~ 109 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||+.. +.+++
T Consensus 103 ~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 182 (303)
T TIGR01288 103 RYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 182 (303)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 001112222 36999999999999999999999999999999653 34555
Q ss_pred HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 110 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 110 ~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++|.|||++||+++++..+||+++ ++.+|+++..++++...
T Consensus 183 ~~g~til~~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 183 ARGKTILLTTHFMEEAERLCDRLC--VLESGRKIAEGRPHALI 223 (303)
T ss_pred hCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHH
Confidence 668999999999999999999997 44567788888877654
No 30
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=3.3e-29 Score=199.18 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=98.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCC---CCccHHHHHHH
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV---PEPSLQHKVMI 80 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~qr~~l 80 (224)
-.+++||+++|+||||||||||+++|+|+++|+ .|.+.+.+. .+.... +.... .+.+.. .|+||+||+++
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~--~~~~~~--~~~~~--~~~i~~~~qLS~G~~qrl~l 93 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGK--EVSFAS--PRDAR--RAGIAMVYQLSVGERQMVEI 93 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCE--ECCcCC--HHHHH--hcCeEEEEecCHHHHHHHHH
Confidence 368999999999999999999999999999987 688776332 111000 00000 001111 68999999999
Q ss_pred HHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEE
Q 027392 81 EAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV 143 (224)
Q Consensus 81 a~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v 143 (224)
|++++.+|++|||||||++||... ++++.+++.|+|++||+.++...+||+++. + .+++++
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~-l-~~g~i~ 161 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTV-L-RDGRVV 161 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE-E-ECCEEE
Confidence 999999999999999999999543 345556689999999999988889999974 4 444443
No 31
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.3e-29 Score=204.06 Aligned_cols=147 Identities=20% Similarity=0.303 Sum_probs=110.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-------------cccCC----CCccc-----c-
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-------------EIGGD----GDIPH-----S- 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-------------~~~~~----~~~~~-----~- 59 (224)
+-.|++||+++|+||+|||||||||+|+|+..++ .|.+.+.+... .+++. ..++. +
T Consensus 24 nl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t-~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NV 102 (258)
T COG3638 24 NLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT-SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENV 102 (258)
T ss_pred eEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC-cceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHH
Confidence 4478999999999999999999999999999887 56666543210 01100 00000 0
Q ss_pred -------------------------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH
Q 027392 60 -------------------------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104 (224)
Q Consensus 60 -------------------------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~ 104 (224)
.....+++++ .||||+||++|||||+.+|++|+.|||++.||+..
T Consensus 103 l~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~ 182 (258)
T COG3638 103 LLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPES 182 (258)
T ss_pred HhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhh
Confidence 0111233333 47999999999999999999999999999999643
Q ss_pred -------HHHHH-HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 -------CRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 -------~~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++++. +.|.|+|++-|+.+++..+|+|++. + ..|++|+.|++.+.-
T Consensus 183 a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riig-l-~~G~ivfDg~~~el~ 236 (258)
T COG3638 183 AKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIG-L-KAGRIVFDGPASELT 236 (258)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheE-e-cCCcEEEeCChhhhh
Confidence 34443 5699999999999999999999985 4 557899998887644
No 32
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=7.9e-29 Score=204.77 Aligned_cols=133 Identities=21% Similarity=0.284 Sum_probs=95.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC--------------CcccC---------CCCcccch
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS--------------NEIGG---------DGDIPHSA 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~--------------~~~~~---------~~~~~~~~ 60 (224)
-.|++||+++|+||+||||||||++|.|+..|+ +|.+.+.+.+ ..+++ .....++.
T Consensus 26 l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt-~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv 104 (226)
T COG1136 26 LEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENV 104 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHH
Confidence 368999999999999999999999999999997 6766654311 01111 00000000
Q ss_pred ------------------hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------H
Q 027392 61 ------------------IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------A 104 (224)
Q Consensus 61 ------------------~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~ 104 (224)
....+.+++ .||||+||+++|||++++|++|+.||||.+||.+ .
T Consensus 105 ~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~l 184 (226)
T COG1136 105 ELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLEL 184 (226)
T ss_pred HhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHH
Confidence 001122222 3799999999999999999999999999999954 3
Q ss_pred HHHHH-HcCCEEEEEEeCcchHHhhccceeeeccCC
Q 027392 105 CRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGG 139 (224)
Q Consensus 105 ~~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~ 139 (224)
+.++. +.|.|+|++|||...+ ..|||++. +.+|
T Consensus 185 l~~~~~~~g~tii~VTHd~~lA-~~~dr~i~-l~dG 218 (226)
T COG1136 185 LRELNKERGKTIIMVTHDPELA-KYADRVIE-LKDG 218 (226)
T ss_pred HHHHHHhcCCEEEEEcCCHHHH-HhCCEEEE-EeCC
Confidence 44554 4589999999999855 48999975 5443
No 33
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.4e-28 Score=219.21 Aligned_cols=157 Identities=13% Similarity=0.158 Sum_probs=115.4
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-----------------EcCCCcccCCCCcccchh-----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-----------------VDTSNEIGGDGDIPHSAI----- 61 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-----------------~~~~~~~~~~~~~~~~~~----- 61 (224)
-.+++|++++|+||||||||||||+|+|+.+|+ .|.|.+ +.|+..++....+.++..
T Consensus 40 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~ 118 (377)
T PRK11607 40 LTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT-AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQ 118 (377)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence 368899999999999999999999999999987 565543 333222221111111110
Q ss_pred -------------hHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH-H
Q 027392 62 -------------GTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA-E 110 (224)
Q Consensus 62 -------------~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~-~ 110 (224)
...+.+++ .|+||+||++|||||+.+|++|+||||+++||... +.++. +
T Consensus 119 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 198 (377)
T PRK11607 119 DKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER 198 (377)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 01122222 36999999999999999999999999999999653 23343 4
Q ss_pred cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027392 111 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 111 ~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
.|.|+|++||+.+++..+||+++ ++.+|+++..++++..+..+......+|
T Consensus 199 ~g~tii~vTHd~~ea~~laDri~--vl~~G~i~~~g~~~~~~~~p~~~~~a~~ 249 (377)
T PRK11607 199 VGVTCVMVTHDQEEAMTMAGRIA--IMNRGKFVQIGEPEEIYEHPTTRYSAEF 249 (377)
T ss_pred cCCEEEEEcCCHHHHHHhCCEEE--EEeCCEEEEEcCHHHHHhCCccHHHHHh
Confidence 58999999999999999999997 5566889999999988876554444444
No 34
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.6e-28 Score=216.63 Aligned_cols=149 Identities=15% Similarity=0.178 Sum_probs=108.6
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc----------------------CCCcccCCCCcccch
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD----------------------TSNEIGGDGDIPHSA 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~----------------------~~~~~~~~~~~~~~~ 60 (224)
+-.|++|++++|+||||||||||+|+|+|+++|+ .|.|.+.+ +...+.....+.++.
T Consensus 25 sl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~-~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni 103 (343)
T PRK11153 25 SLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT-SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNV 103 (343)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHH
Confidence 3468999999999999999999999999999887 56665432 111111100000000
Q ss_pred ------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 61 ------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 61 ------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||... +
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L 183 (343)
T PRK11153 104 ALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183 (343)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 001122232 37999999999999999999999999999999643 3
Q ss_pred HHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHH
Q 027392 106 RSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 154 (224)
Q Consensus 106 ~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~ 154 (224)
+++.+ .|.|||++||+++++..+||+++ ++.+|+++..++.+..+..
T Consensus 184 ~~l~~~~g~tiilvtH~~~~i~~~~d~v~--~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 184 KDINRELGLTIVLITHEMDVVKRICDRVA--VIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhC
Confidence 44544 48999999999999999999997 4566788888887766543
No 35
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.7e-28 Score=204.31 Aligned_cols=145 Identities=19% Similarity=0.229 Sum_probs=104.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc----------------------CCCcccCCCCcccch-
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD----------------------TSNEIGGDGDIPHSA- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~----------------------~~~~~~~~~~~~~~~- 60 (224)
-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+.+ +...+.....+.++.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 99 (235)
T cd03261 21 LDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD-SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVA 99 (235)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHH
Confidence 468999999999999999999999999999887 56665422 111110000000000
Q ss_pred ------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 61 ------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 61 ------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||... +
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l 179 (235)
T cd03261 100 FPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLI 179 (235)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 001122232 36999999999999999999999999999999543 3
Q ss_pred HHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHH
Q 027392 106 RSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 151 (224)
Q Consensus 106 ~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~ 151 (224)
+++++ .|.|||++||+.+++..+||+++ ++.+|+++..++++..
T Consensus 180 ~~~~~~~~~tvi~vsH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 180 RSLKKELGLTSIMVTHDLDTAFAIADRIA--VLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHHHHhcCcEEEEEecCHHHHHHhcCEEE--EEECCeEEEecCHHHH
Confidence 44554 48999999999998999999997 4455777777766543
No 36
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.2e-28 Score=201.93 Aligned_cols=143 Identities=16% Similarity=0.198 Sum_probs=102.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc------------------CCCcccCCCCcccc------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD------------------TSNEIGGDGDIPHS------ 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~------------------~~~~~~~~~~~~~~------ 59 (224)
-.+.+|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+........+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 99 (220)
T cd03265 21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT-SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHAR 99 (220)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHH
Confidence 468899999999999999999999999999887 56655422 11111100000000
Q ss_pred ------------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH
Q 027392 60 ------------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE 110 (224)
Q Consensus 60 ------------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~ 110 (224)
.....+.+++ .|+||+||++||+|++.+|++|||||||++||... +.++.+
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 179 (220)
T cd03265 100 LYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKE 179 (220)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHH
Confidence 0001122222 37999999999999999999999999999999653 344455
Q ss_pred c-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHH
Q 027392 111 R-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEE 149 (224)
Q Consensus 111 ~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~ 149 (224)
+ |.|||++||+.++...+||+++ ++.+|+++..++++
T Consensus 180 ~~~~tvi~~tH~~~~~~~~~d~i~--~l~~G~i~~~~~~~ 217 (220)
T cd03265 180 EFGMTILLTTHYMEEAEQLCDRVA--IIDHGRIIAEGTPE 217 (220)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEE--EEeCCEEEEeCChH
Confidence 4 8999999999999999999997 44556777665544
No 37
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=4.2e-28 Score=192.31 Aligned_cols=147 Identities=13% Similarity=0.187 Sum_probs=110.3
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-----------------cccCCCCcccch-------
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-----------------EIGGDGDIPHSA------- 60 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-----------------~~~~~~~~~~~~------- 60 (224)
.|+.||+++|+||+|||||||++.|+|+..|. +|.+.+.+++- .++...++.++.
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~-~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~ 99 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA-SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG 99 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCC-CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc
Confidence 68999999999999999999999999999998 68877754321 111111111110
Q ss_pred -----------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH-------HH-HHc
Q 027392 61 -----------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AER 111 (224)
Q Consensus 61 -----------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~-------~~-~~~ 111 (224)
...+.++++ .|||||||++|||++..+-++++||||++.||+.... .+ .++
T Consensus 100 LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~ 179 (231)
T COG3840 100 LKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDER 179 (231)
T ss_pred cccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhh
Confidence 001122222 3799999999999999999999999999999975433 33 367
Q ss_pred CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHH
Q 027392 112 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 154 (224)
Q Consensus 112 g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~ 154 (224)
+.|++++||..+.+..++++++ +..+|++...+.....+.+
T Consensus 180 ~~TllmVTH~~~Da~~ia~~~~--fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 180 KMTLLMVTHHPEDAARIADRVV--FLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred CCEEEEEeCCHHHHHHhhhceE--EEeCCEEEeeccHHHHhcc
Confidence 8999999999999999999997 4556788888777765544
No 38
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.6e-28 Score=201.46 Aligned_cols=138 Identities=16% Similarity=0.195 Sum_probs=98.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------CCCcccCCCCcccch------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------TSNEIGGDGDIPHSA------ 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------~~~~~~~~~~~~~~~------ 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +...+.....+.++.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 99 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD-SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKL 99 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHH
Confidence 368999999999999999999999999999887 56665422 111111000000000
Q ss_pred ------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-
Q 027392 61 ------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE- 110 (224)
Q Consensus 61 ------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~- 110 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||... +.++++
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~ 179 (213)
T cd03259 100 RGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE 179 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 001122222 36999999999999999999999999999999653 344444
Q ss_pred cCCEEEEEEeCcchHHhhccceeeeccCCeeEEE
Q 027392 111 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 144 (224)
Q Consensus 111 ~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~ 144 (224)
.|.|||++||+.++...+||+++. + .+|+++.
T Consensus 180 ~~~tii~~sH~~~~~~~~~d~v~~-l-~~G~i~~ 211 (213)
T cd03259 180 LGITTIYVTHDQEEALALADRIAV-M-NEGRIVQ 211 (213)
T ss_pred cCCEEEEEecCHHHHHHhcCEEEE-E-ECCEEEe
Confidence 489999999999988999999974 4 4455543
No 39
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=2.4e-28 Score=196.66 Aligned_cols=120 Identities=19% Similarity=0.178 Sum_probs=96.2
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHH
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 84 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al 84 (224)
.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+.+. .+.+ .++. .. .|+||+||+++|+++
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~--~i~~---~~q~-------~~-LSgGq~qrv~laral 86 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDGI--TPVY---KPQY-------ID-LSGGELQRVAIAAAL 86 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECCE--EEEE---Eccc-------CC-CCHHHHHHHHHHHHH
Confidence 67999999999999999999999999999998 688776321 1211 1111 01 689999999999999
Q ss_pred hcCCCEEEEeCCCChHhHHH-------HHHHHHcC-CEEEEEEeCcchHHhhccceeeeccCC
Q 027392 85 NHMPEVIIVDEIGTEAEAHA-------CRSIAERG-VMLIGTAHGEWLENIIKNPILSDLIGG 139 (224)
Q Consensus 85 ~~~p~llilDEp~~~lD~~~-------~~~~~~~g-~tvi~~tH~~~~~~~~~d~v~~~l~~~ 139 (224)
+.+|++++|||||++||... +.++++++ .|+|++||+.++...+||+++. +.++
T Consensus 87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~-l~~~ 148 (177)
T cd03222 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHV-FEGE 148 (177)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEE-EcCC
Confidence 99999999999999999653 34445554 8999999999989999999974 5443
No 40
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.96 E-value=2.3e-28 Score=219.18 Aligned_cols=147 Identities=18% Similarity=0.268 Sum_probs=109.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCC---------C
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGD---------G 54 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~---------~ 54 (224)
+-.+++||+++|+||||||||||+|+|+|+++|+ .|.|.+.+ +...+.+. .
T Consensus 23 s~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~-sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~ 101 (402)
T PRK09536 23 DLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT-AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMG 101 (402)
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC-CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhc
Confidence 3468999999999999999999999999999987 56555432 22111110 0
Q ss_pred Cccc--------c-----hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------H
Q 027392 55 DIPH--------S-----AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------A 104 (224)
Q Consensus 55 ~~~~--------~-----~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~ 104 (224)
..+. . .....+.+++ .|+||+||++||++|+++|++|||||||++||+. .
T Consensus 102 ~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~l 181 (402)
T PRK09536 102 RTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLEL 181 (402)
T ss_pred cchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 0000 0 0001122222 3799999999999999999999999999999964 3
Q ss_pred HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 ~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++++.+++.|||++||+++++..+||+++ ++++|+++..++++...
T Consensus 182 L~~l~~~g~TIIivsHdl~~~~~~adrii--~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 182 VRRLVDDGKTAVAAIHDLDLAARYCDELV--LLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHhcCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEecCHHHHh
Confidence 44555668999999999999999999997 56678888888887654
No 41
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.9e-28 Score=208.49 Aligned_cols=158 Identities=14% Similarity=0.186 Sum_probs=121.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc--------------c----cCCCCcccch----
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE--------------I----GGDGDIPHSA---- 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~--------------~----~~~~~~~~~~---- 60 (224)
+-.|+.|||+.|.|-+|||||||+|++++++.|+ .|.|.+-+.+-. + +..+.+|+..
T Consensus 48 sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept-~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~N 126 (386)
T COG4175 48 SLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT-RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLEN 126 (386)
T ss_pred eeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC-CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhh
Confidence 3468999999999999999999999999999998 688876432100 0 0001122210
Q ss_pred -------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------
Q 027392 61 -------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------- 104 (224)
Q Consensus 61 -------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------- 104 (224)
....+.+++ .||||+||+.|||||+.+|++|++|||+|.||+-.
T Consensus 127 v~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQde 206 (386)
T COG4175 127 VAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDE 206 (386)
T ss_pred hhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHH
Confidence 001223333 36999999999999999999999999999999643
Q ss_pred HHHHH-HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027392 105 CRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 105 ~~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
+.++. +-++||+++|||++++.++.||+. ++.+|++|+.|+|+++...+.......|
T Consensus 207 Ll~Lq~~l~KTIvFitHDLdEAlriG~rIa--imkdG~ivQ~Gtp~eIl~~PAndYV~~F 264 (386)
T COG4175 207 LLELQAKLKKTIVFITHDLDEALRIGDRIA--IMKDGEIVQVGTPEEILLNPANDYVRDF 264 (386)
T ss_pred HHHHHHHhCCeEEEEecCHHHHHhccceEE--EecCCeEEEeCCHHHHHcCccHHHHHHH
Confidence 23333 448999999999999999999996 7888999999999999888877766655
No 42
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.96 E-value=3.8e-28 Score=210.80 Aligned_cols=145 Identities=19% Similarity=0.199 Sum_probs=106.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc------------------CCCcccCCCCcccch-----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD------------------TSNEIGGDGDIPHSA----- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~------------------~~~~~~~~~~~~~~~----- 60 (224)
-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+.+ +...+.......++.
T Consensus 23 ~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~-~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~ 101 (301)
T TIGR03522 23 FEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD-SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAG 101 (301)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHH
Confidence 368999999999999999999999999999988 56665432 211111100000000
Q ss_pred -------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH
Q 027392 61 -------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE 110 (224)
Q Consensus 61 -------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~ 110 (224)
....+.+++ .|+||+||+++|+|++++|++|||||||++||+.. +++++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~- 180 (301)
T TIGR03522 102 IYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG- 180 (301)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-
Confidence 001122232 36999999999999999999999999999999654 33443
Q ss_pred cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 111 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 111 ~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++.|||++||++++++.+||+++ ++++|+++..++.+...
T Consensus 181 ~~~tiii~sH~l~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 220 (301)
T TIGR03522 181 KDKTIILSTHIMQEVEAICDRVI--IINKGKIVADKKLDELS 220 (301)
T ss_pred CCCEEEEEcCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHH
Confidence 37899999999999999999997 55667888888887654
No 43
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.96 E-value=2.8e-28 Score=200.19 Aligned_cols=130 Identities=17% Similarity=0.207 Sum_probs=95.4
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE----------------cCCCcc-cCCCCccc--------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV----------------DTSNEI-GGDGDIPH-------- 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~----------------~~~~~~-~~~~~~~~-------- 58 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+. .+.... .....+.+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~ 99 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGLIKES-SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKE 99 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhh
Confidence 368999999999999999999999999999887 5655432 222110 00000000
Q ss_pred ------chhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCEE
Q 027392 59 ------SAIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVML 115 (224)
Q Consensus 59 ------~~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~tv 115 (224)
......+.+++ .|+||+||+++|++++.+|++|||||||++||... +++++++|.|+
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 179 (205)
T cd03226 100 LDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAV 179 (205)
T ss_pred cCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 00111223332 36999999999999999999999999999999643 34455568999
Q ss_pred EEEEeCcchHHhhccceee
Q 027392 116 IGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 116 i~~tH~~~~~~~~~d~v~~ 134 (224)
|++||+.++...+||+++.
T Consensus 180 i~~sH~~~~~~~~~d~i~~ 198 (205)
T cd03226 180 IVITHDYEFLAKVCDRVLL 198 (205)
T ss_pred EEEeCCHHHHHHhCCEEEE
Confidence 9999999988889999974
No 44
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.96 E-value=2.1e-28 Score=202.42 Aligned_cols=130 Identities=16% Similarity=0.273 Sum_probs=95.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC----------------------CCcccCCCCcccch-
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT----------------------SNEIGGDGDIPHSA- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~----------------------~~~~~~~~~~~~~~- 60 (224)
-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+.+. ...+.....+.++.
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 102 (216)
T TIGR00960 24 FHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT-RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVA 102 (216)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHH
Confidence 468999999999999999999999999999887 566654321 11110000000000
Q ss_pred -----------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 61 -----------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 61 -----------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
....+.+++ .|+||+||++||+|++.+|++|||||||++||... +.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 182 (216)
T TIGR00960 103 FPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFE 182 (216)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence 001122222 36999999999999999999999999999999643 34
Q ss_pred HHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 107 SIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 107 ~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
++++++.|||++||+.+++..+||+++.
T Consensus 183 ~~~~~~~tii~vsH~~~~~~~~~d~i~~ 210 (216)
T TIGR00960 183 EFNRRGTTVLVATHDINLVETYRHRTLT 210 (216)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 5555689999999999989889999964
No 45
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.1e-28 Score=203.75 Aligned_cols=147 Identities=15% Similarity=0.164 Sum_probs=105.6
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-----------------EcCCCcccCCCCcccc------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-----------------VDTSNEIGGDGDIPHS------ 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-----------------~~~~~~~~~~~~~~~~------ 59 (224)
.-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+ +.+...+.....+..+
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 100 (239)
T cd03296 22 SLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD-SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLR 100 (239)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhh
Confidence 3468999999999999999999999999999887 465544 2222111110000000
Q ss_pred ----------------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 60 ----------------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 60 ----------------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
.....+.+++ .|+||+||++||+|++.+|++|||||||++||... +.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 180 (239)
T cd03296 101 VKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLR 180 (239)
T ss_pred hccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 0011122222 36999999999999999999999999999999653 34
Q ss_pred HHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 107 SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 107 ~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+++++ |.|||++||+.++...+||+++. +.+|+++..++++...
T Consensus 181 ~~~~~~~~tvii~sH~~~~~~~~~d~i~~--l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 181 RLHDELHVTTVFVTHDQEEALEVADRVVV--MNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHhCCEEEE--EECCeEEEecCHHHHh
Confidence 45544 89999999999988889999974 4557777777776543
No 46
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.96 E-value=5.1e-28 Score=215.54 Aligned_cols=150 Identities=14% Similarity=0.151 Sum_probs=111.4
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC----C--------------CcccCC----CCccc--
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT----S--------------NEIGGD----GDIPH-- 58 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~----~--------------~~~~~~----~~~~~-- 58 (224)
+-.|++||+++|+|+||||||||+|+|+|+++|+ .|.|.+.++ + ..+++. ..+++
T Consensus 44 sf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~-~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~T 122 (382)
T TIGR03415 44 SLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS-RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLT 122 (382)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCc
Confidence 3468999999999999999999999999999988 677766431 0 001110 00110
Q ss_pred ---chh------------------hHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---
Q 027392 59 ---SAI------------------GTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 104 (224)
Q Consensus 59 ---~~~------------------~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~--- 104 (224)
+.. ...+.+++ .|+||+||++||++|+.+|++|||||||++||+..
T Consensus 123 v~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~ 202 (382)
T TIGR03415 123 VEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQ 202 (382)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 000 01222333 36999999999999999999999999999999654
Q ss_pred ----HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHh
Q 027392 105 ----CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 155 (224)
Q Consensus 105 ----~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~ 155 (224)
+.++++ .+.|+|++||+++++..+||+++ ++.+|+++..++++.+...+
T Consensus 203 l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~--vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 203 LQDELLELQAKLNKTIIFVSHDLDEALKIGNRIA--IMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEecCHHHHhhCc
Confidence 344444 48999999999999999999997 55667889999988776443
No 47
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4e-28 Score=214.89 Aligned_cols=157 Identities=13% Similarity=0.119 Sum_probs=113.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------------CCCcccCCCCcccch
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------------TSNEIGGDGDIPHSA 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------------~~~~~~~~~~~~~~~ 60 (224)
-.+++|++++|+||||||||||+|+|+|+++|+ .|.+.+.+ +...+.....+.++.
T Consensus 19 l~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~-~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl 97 (352)
T PRK11144 19 LTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ-KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNL 97 (352)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHH
Confidence 367899999999999999999999999999887 56665422 111110000000000
Q ss_pred ------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHc
Q 027392 61 ------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAER 111 (224)
Q Consensus 61 ------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~ 111 (224)
....+.+++ .|+||+||++||+|++.+|++|||||||++||... ++++.++
T Consensus 98 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~ 177 (352)
T PRK11144 98 RYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE 177 (352)
T ss_pred HhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 001222332 36999999999999999999999999999999643 3444444
Q ss_pred -CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027392 112 -GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 112 -g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
+.|+|++||+.+++..+||+++ ++.+|+++..++++..+..+.......|
T Consensus 178 ~g~tii~vTHd~~~~~~~~d~i~--~l~~G~i~~~g~~~~i~~~p~~~~~~~~ 228 (352)
T PRK11144 178 INIPILYVSHSLDEILRLADRVV--VLEQGKVKAFGPLEEVWASSAMRPWLPK 228 (352)
T ss_pred cCCeEEEEecCHHHHHHhCCEEE--EEeCCEEEEecCHHHHHhCcchhhhhcc
Confidence 8999999999999999999997 5566888899999888766653443443
No 48
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=6.1e-28 Score=206.31 Aligned_cols=147 Identities=15% Similarity=0.170 Sum_probs=105.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------------CCCcccCCCCcccch
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------------TSNEIGGDGDIPHSA 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------------~~~~~~~~~~~~~~~ 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+.....+.++.
T Consensus 45 ~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~-~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 123 (269)
T cd03294 45 LDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT-SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENV 123 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHH
Confidence 468999999999999999999999999999887 56655422 111111000000000
Q ss_pred ------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 61 ------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 61 ------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
....+.+++ .|+||+||++||+|++.+|++|||||||++||... +
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l 203 (269)
T cd03294 124 AFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDEL 203 (269)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 001122222 37999999999999999999999999999999653 3
Q ss_pred HHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 106 RSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 106 ~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
.++.+ .|.|+|++||+++++..+||+++ ++.+|+++..++++....
T Consensus 204 ~~~~~~~g~tiii~tH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 204 LRLQAELQKTIVFITHDLDEALRLGDRIA--IMKDGRLVQVGTPEEILT 250 (269)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEECCEEEEeCCHHHHHh
Confidence 44544 48999999999998889999997 445577777777766543
No 49
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=8e-28 Score=201.81 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=104.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc----------------------CCCcccCCCCcccch-
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD----------------------TSNEIGGDGDIPHSA- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~----------------------~~~~~~~~~~~~~~~- 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+.....+.++.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 100 (241)
T cd03256 22 LSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT-SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVL 100 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-CceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHH
Confidence 478999999999999999999999999999887 56655422 111110000000000
Q ss_pred -------------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027392 61 -------------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 61 -------------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 180 (241)
T cd03256 101 SGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASS 180 (241)
T ss_pred hhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 001122222 36999999999999999999999999999999643
Q ss_pred ------HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHH
Q 027392 105 ------CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 151 (224)
Q Consensus 105 ------~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~ 151 (224)
+.++.+ .|.|||++||+.+++..+||+++ ++.+|+++..++++..
T Consensus 181 ~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 181 RQVMDLLKRINREEGITVIVSLHQVDLAREYADRIV--GLKDGRIVFDGPPAEL 232 (241)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEeecCHHHh
Confidence 344444 48999999999999999999997 4455777777776654
No 50
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.95 E-value=8.1e-28 Score=202.14 Aligned_cols=145 Identities=18% Similarity=0.253 Sum_probs=104.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc----------------------CCCcccCCCCcccc--
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD----------------------TSNEIGGDGDIPHS-- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~----------------------~~~~~~~~~~~~~~-- 59 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +...+.....+.++
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 101 (243)
T TIGR02315 23 LNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS-SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVL 101 (243)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHh
Confidence 368999999999999999999999999999887 56655422 11111000000000
Q ss_pred ------------------------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027392 60 ------------------------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 60 ------------------------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
.....+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 181 (243)
T TIGR02315 102 HGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTS 181 (243)
T ss_pred hcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 0000122222 36999999999999999999999999999999643
Q ss_pred ------HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHH
Q 027392 105 ------CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 151 (224)
Q Consensus 105 ------~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~ 151 (224)
+.++++ .|.|+|++||+.+++..+||+++ ++.+|+++..++++..
T Consensus 182 ~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 182 KQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIV--GLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE--EEECCEEEecCCHHHh
Confidence 344444 48899999999998888999997 4455777777776653
No 51
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=6e-28 Score=216.38 Aligned_cols=148 Identities=14% Similarity=0.218 Sum_probs=108.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------------CCCcccCCCCcccch
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------------TSNEIGGDGDIPHSA 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------------~~~~~~~~~~~~~~~ 60 (224)
-.|++||+++|+||||||||||+|+|+|+++|+ .|.|.+.+ |...+.....+.++.
T Consensus 49 l~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~-sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl 127 (400)
T PRK10070 49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT-RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNT 127 (400)
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC-CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHH
Confidence 368999999999999999999999999999987 56665432 111111100000000
Q ss_pred ------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 61 ------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 61 ------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
....+.+++ .|+||+||++||+|++.+|++|||||||++||+.. +
T Consensus 128 ~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L 207 (400)
T PRK10070 128 AFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDEL 207 (400)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 001122332 36999999999999999999999999999999653 3
Q ss_pred HHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHH
Q 027392 106 RSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 154 (224)
Q Consensus 106 ~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~ 154 (224)
.++++ .++|||++||+++++..+||+++ ++.+|+++..++++.....
T Consensus 208 ~~l~~~~g~TIIivTHd~~~~~~~~Dri~--vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 208 VKLQAKHQRTIVFISHDLDEAMRIGDRIA--IMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred HHHHHHCCCeEEEEECCHHHHHHhCCEEE--EEECCEEEecCCHHHHHhC
Confidence 44443 58999999999999999999997 4566788888888776543
No 52
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.95 E-value=7.4e-28 Score=201.04 Aligned_cols=145 Identities=16% Similarity=0.191 Sum_probs=104.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC--------------------CCcccCCCCcccch---
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--------------------SNEIGGDGDIPHSA--- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~--------------------~~~~~~~~~~~~~~--- 60 (224)
-.+.+|++++|+||||||||||+++|+|+++|+ .|.+.+.+. ...+.....+.++.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 99 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD-SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAV 99 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHH
Confidence 368899999999999999999999999999887 566654321 11000000000000
Q ss_pred ---------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHH
Q 027392 61 ---------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSI 108 (224)
Q Consensus 61 ---------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~ 108 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||... ++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 179 (232)
T cd03218 100 LEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKIL 179 (232)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 001122222 36999999999999999999999999999999653 3455
Q ss_pred HHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHH
Q 027392 109 AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 151 (224)
Q Consensus 109 ~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~ 151 (224)
.+++.|+|++||+.++...+||+++ ++.+|+++..++.+..
T Consensus 180 ~~~~~tii~~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 180 KDRGIGVLITDHNVRETLSITDRAY--IIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHCCCEEEEEeCCHHHHHHhCCEEE--EEECCeEEEEeCHHHh
Confidence 5668999999999988999999997 4455777777666544
No 53
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.95 E-value=5.7e-28 Score=199.27 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=99.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-----------------cCCCcccCCCCcccch------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-----------------DTSNEIGGDGDIPHSA------ 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~~------ 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+. .+...+.......++.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 99 (213)
T cd03301 21 LDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT-SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKL 99 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHh
Confidence 468999999999999999999999999999887 5655442 2211111000000000
Q ss_pred ------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-
Q 027392 61 ------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE- 110 (224)
Q Consensus 61 ------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~- 110 (224)
....+.+++ .|+||+||+++|++++.+|+++||||||++||... ++++++
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 179 (213)
T cd03301 100 RKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR 179 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 001122222 37999999999999999999999999999999653 344444
Q ss_pred cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEc
Q 027392 111 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 145 (224)
Q Consensus 111 ~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~ 145 (224)
.+.|||++||+.+++..+|++++. + .+|+++..
T Consensus 180 ~~~tvi~~sH~~~~~~~~~d~i~~-l-~~g~~~~~ 212 (213)
T cd03301 180 LGTTTIYVTHDQVEAMTMADRIAV-M-NDGQIQQI 212 (213)
T ss_pred cCCEEEEEeCCHHHHHHhcCeEEE-E-ECCEEEec
Confidence 489999999999988899999974 4 45666544
No 54
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=5.8e-28 Score=200.36 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=100.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE--------------EcCCCcccCCCCcccch---------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--------------VDTSNEIGGDGDIPHSA--------- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~--------------~~~~~~~~~~~~~~~~~--------- 60 (224)
-.|++|++++|+||||||||||+++|+|+++|+ .|.+.+ +.+...+.......++.
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 103 (220)
T cd03293 25 LSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT-SGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGV 103 (220)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCC
Confidence 368999999999999999999999999999887 566544 22221111100000000
Q ss_pred ---------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-cCC
Q 027392 61 ---------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGV 113 (224)
Q Consensus 61 ---------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~-~g~ 113 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||... +.++.+ .+.
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~ 183 (220)
T cd03293 104 PKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGK 183 (220)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 001122222 47999999999999999999999999999999643 344433 489
Q ss_pred EEEEEEeCcchHHhhccceeeeccC-CeeEEEc
Q 027392 114 MLIGTAHGEWLENIIKNPILSDLIG-GVDTVTL 145 (224)
Q Consensus 114 tvi~~tH~~~~~~~~~d~v~~~l~~-~~~~v~~ 145 (224)
|||++||+.++...+||+++. +.+ +|+++..
T Consensus 184 tiii~sH~~~~~~~~~d~i~~-l~~~~G~i~~~ 215 (220)
T cd03293 184 TVLLVTHDIDEAVFLADRVVV-LSARPGRIVAE 215 (220)
T ss_pred EEEEEecCHHHHHHhCCEEEE-EECCCCEEEEE
Confidence 999999999988899999974 543 4666654
No 55
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=5.3e-28 Score=193.83 Aligned_cols=129 Identities=16% Similarity=0.249 Sum_probs=95.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc-c----c-CCCCcccc---h--hhHHhHcCCCCc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-I----G-GDGDIPHS---A--IGTARRMQVPEP 72 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~-~----~-~~~~~~~~---~--~~~~~~~~~~~~ 72 (224)
-.+.+|++++|+||||||||||+++|+|+++|+ .|.+.+.+..-. . . .....++. . ....+.+. .|+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~-LS~ 98 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD-SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK-LSG 98 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-cCH
Confidence 368999999999999999999999999999887 677765321100 0 0 00001110 0 01112221 689
Q ss_pred cHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------HHHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 73 SLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 73 g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
||+||++||++++.+|++++|||||++||.. .++++.++|.|+|++||+.++...+||+++.
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~ 167 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAI 167 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEE
Confidence 9999999999999999999999999999954 3445556689999999999988889999964
No 56
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=9.2e-28 Score=200.71 Aligned_cols=145 Identities=17% Similarity=0.226 Sum_probs=104.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC----------------------CCcccCCCCcccch-
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT----------------------SNEIGGDGDIPHSA- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~----------------------~~~~~~~~~~~~~~- 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+. ...+........+.
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 104 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVA 104 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHH
Confidence 368999999999999999999999999999987 566654321 11110000000000
Q ss_pred -----------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 61 -----------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 61 -----------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
....+.+++ .|+||+||++||++++.+|+++||||||++||... +.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~ 184 (233)
T cd03258 105 LPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLR 184 (233)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHH
Confidence 001122222 36999999999999999999999999999999653 34
Q ss_pred HHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHH
Q 027392 107 SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 151 (224)
Q Consensus 107 ~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~ 151 (224)
+++++ |.|||++||+.+++..+||+++ ++.+|+++..++.+..
T Consensus 185 ~~~~~~~~tvii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 185 DINRELGLTIVLITHEMEVVKRICDRVA--VMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEecCHHHH
Confidence 45544 8999999999998889999997 4456777777665543
No 57
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=7.3e-28 Score=209.35 Aligned_cols=147 Identities=13% Similarity=0.162 Sum_probs=108.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC----------------------------------c
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----------------------------------E 49 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~----------------------------------~ 49 (224)
-.|++||+++|+||||||||||+++|+|+++|+ .|.+.+.+.+. .
T Consensus 28 l~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (305)
T PRK13651 28 VEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD-TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRR 106 (305)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CcEEEEeceecccccccccccccccccccccccccccchHHHHHhc
Confidence 368999999999999999999999999999987 57665531100 0
Q ss_pred ccCCCC-----cc-----cch------------------hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCE
Q 027392 50 IGGDGD-----IP-----HSA------------------IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEV 90 (224)
Q Consensus 50 ~~~~~~-----~~-----~~~------------------~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~l 90 (224)
+++... +. ++. ....+.+++ .|+||+||++||++++.+|++
T Consensus 107 ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~l 186 (305)
T PRK13651 107 VGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDF 186 (305)
T ss_pred eEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 010000 00 000 001222333 369999999999999999999
Q ss_pred EEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 91 IIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 91 lilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
|||||||++||+.. +.++++.|.|||++||+++++..+||+++ ++.+|+++..++++..+.
T Consensus 187 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~--vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 187 LVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI--FFKDGKIIKDGDTYDILS 254 (305)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE--EEECCEEEEECCHHHHhc
Confidence 99999999999643 34555668999999999998999999997 446678888888877653
No 58
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=7.8e-28 Score=207.63 Aligned_cols=147 Identities=15% Similarity=0.168 Sum_probs=108.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-----------------------cCCC--cccCCCCcc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-----------------------DTSN--EIGGDGDIP 57 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-----------------------~~~~--~~~~~~~~~ 57 (224)
+-.|++|++++|+||||||||||+++|+|+++|+ .|.+.+. .|.. .+.. ..+.
T Consensus 26 sl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~ 103 (288)
T PRK13643 26 DLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT-EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVL 103 (288)
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC-CcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHH
Confidence 3468999999999999999999999999999987 5655442 2211 0000 0000
Q ss_pred cch------------------hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH----
Q 027392 58 HSA------------------IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---- 104 (224)
Q Consensus 58 ~~~------------------~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~---- 104 (224)
++. ....+.+++ .|+||+||++||++++.+|++|||||||++||+..
T Consensus 104 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l 183 (288)
T PRK13643 104 KDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEM 183 (288)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHH
Confidence 000 000122232 36899999999999999999999999999999653
Q ss_pred ---HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 ---CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 ---~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+.+++++|.|||++||+++++..+||+++ ++.+|+++..++++..+.
T Consensus 184 ~~~l~~l~~~g~til~vtHd~~~~~~~~dri~--~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 184 MQLFESIHQSGQTVVLVTHLMDDVADYADYVY--LLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEECCHHHHHc
Confidence 34455668999999999998989999997 556678888888887653
No 59
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.95 E-value=9.1e-28 Score=201.01 Aligned_cols=145 Identities=16% Similarity=0.196 Sum_probs=104.4
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc--------------------CCCcccCCCCcccc----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD--------------------TSNEIGGDGDIPHS---- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~--------------------~~~~~~~~~~~~~~---- 59 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +...+.....+.++
T Consensus 21 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~ 99 (236)
T cd03219 21 FSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT-SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVA 99 (236)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC-CceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHH
Confidence 368999999999999999999999999999887 56654422 11111000000000
Q ss_pred ------------------------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027392 60 ------------------------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 60 ------------------------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
.....+.+++ .|+||+||+++|++++.+|++|||||||++||...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 179 (236)
T cd03219 100 AQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEET 179 (236)
T ss_pred HhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 0001122222 36999999999999999999999999999999643
Q ss_pred ------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHH
Q 027392 105 ------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 151 (224)
Q Consensus 105 ------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~ 151 (224)
+++++++|.|+|++||+.+++..+||+++ ++.+|+++..++++..
T Consensus 180 ~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 180 EELAELIRELRERGITVLLVEHDMDVVMSLADRVT--VLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEeCCEEEeecCHHHh
Confidence 44455578999999999999999999997 4455677777666543
No 60
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.95 E-value=5.7e-28 Score=195.14 Aligned_cols=130 Identities=16% Similarity=0.121 Sum_probs=96.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-----------cccCCCCcc-----cchhhHHhHc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-----------EIGGDGDIP-----HSAIGTARRM 67 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-----------~~~~~~~~~-----~~~~~~~~~~ 67 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+.+- .+++....+ .......+.+
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l 99 (182)
T cd03215 21 FEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA-SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENI 99 (182)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHH
Confidence 468999999999999999999999999999987 67776543110 011110000 0000111122
Q ss_pred CC---CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 68 QV---PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 68 ~~---~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
.. .|+||+||++||++++.+|++||||||+++||... +.++.+++.|+|++||+.++...+||+++.
T Consensus 100 ~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~ 176 (182)
T cd03215 100 ALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILV 176 (182)
T ss_pred HHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 11 68999999999999999999999999999999643 344555689999999999889999999964
No 61
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.95 E-value=7.7e-28 Score=197.92 Aligned_cols=137 Identities=14% Similarity=0.159 Sum_probs=99.3
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC-----------------CCcccCCCCcccc--------
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-----------------SNEIGGDGDIPHS-------- 59 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~-----------------~~~~~~~~~~~~~-------- 59 (224)
.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+. ...+.....+.++
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 100 (208)
T cd03268 22 HVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD-SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL 100 (208)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc
Confidence 68899999999999999999999999999887 566655322 1111100000000
Q ss_pred ------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCEEE
Q 027392 60 ------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLI 116 (224)
Q Consensus 60 ------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi 116 (224)
.....+.+++ .|+||+||+++|++++.+|++|||||||++||... +.++++++.|+|
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii 180 (208)
T cd03268 101 GIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180 (208)
T ss_pred CCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 0001122222 47999999999999999999999999999999653 344455689999
Q ss_pred EEEeCcchHHhhccceeeeccCCeeEEE
Q 027392 117 GTAHGEWLENIIKNPILSDLIGGVDTVT 144 (224)
Q Consensus 117 ~~tH~~~~~~~~~d~v~~~l~~~~~~v~ 144 (224)
++||+.++...+||+++. + .+|+++.
T Consensus 181 ~~tH~~~~~~~~~d~v~~-l-~~g~i~~ 206 (208)
T cd03268 181 ISSHLLSEIQKVADRIGI-I-NKGKLIE 206 (208)
T ss_pred EEcCCHHHHHHhcCEEEE-E-ECCEEEe
Confidence 999999989899999974 4 4455554
No 62
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.1e-28 Score=203.77 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=112.4
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC--------------------cccCCCCcccch--
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN--------------------EIGGDGDIPHSA-- 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~--------------------~~~~~~~~~~~~-- 60 (224)
+-.+++||+++|+|||||||||++++|+|+++|+ +|+|.+.+++- .++....+.++.
T Consensus 24 sl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~-~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~v 102 (250)
T COG0411 24 SLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS-SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAV 102 (250)
T ss_pred eEEEcCCeEEEEECCCCCCceeeeeeecccccCC-CceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHH
Confidence 3468999999999999999999999999999998 68888754310 000000000000
Q ss_pred ----------------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhH
Q 027392 61 ----------------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 102 (224)
Q Consensus 61 ----------------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~ 102 (224)
....+.+++ .++|+++++.||+||+.+|++|+||||.+|+.+
T Consensus 103 a~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~ 182 (250)
T COG0411 103 GAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNP 182 (250)
T ss_pred HhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCH
Confidence 001122333 258999999999999999999999999999874
Q ss_pred H-------HHHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHH
Q 027392 103 H-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 154 (224)
Q Consensus 103 ~-------~~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~ 154 (224)
. .++++++ .|.||+++.|+|+.+..+||+++ .++.|+++..|+|+++.+.
T Consensus 183 ~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~--Vl~~G~~IAeG~P~eV~~d 240 (250)
T COG0411 183 EETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIV--VLNYGEVIAEGTPEEVRNN 240 (250)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEE--eccCCcCcccCCHHHHhcC
Confidence 3 4556666 46999999999999999999997 5566788999999987643
No 63
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.95 E-value=1.4e-27 Score=201.65 Aligned_cols=147 Identities=17% Similarity=0.179 Sum_probs=105.8
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE---------------------------cCCCcccCCCC
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV---------------------------DTSNEIGGDGD 55 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~---------------------------~~~~~~~~~~~ 55 (224)
+-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+. .+...+.....
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (250)
T PRK11264 23 DLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE-AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRT 101 (250)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCC
Confidence 3468999999999999999999999999999887 5665432 11111100000
Q ss_pred cccch-------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH--
Q 027392 56 IPHSA-------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-- 104 (224)
Q Consensus 56 ~~~~~-------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-- 104 (224)
..++. ....+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 181 (250)
T PRK11264 102 VLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVG 181 (250)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 00000 001122222 36899999999999999999999999999999653
Q ss_pred -----HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 -----CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 -----~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.++.++|.|||++||+.++...+||+++ ++.+|+++..++++...
T Consensus 182 ~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 182 EVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAI--FMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEECCEEEEeCCHHHHh
Confidence 34455568999999999998989999997 44557777777776554
No 64
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.95 E-value=1e-27 Score=198.42 Aligned_cols=138 Identities=20% Similarity=0.198 Sum_probs=99.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc------------------CCCcccCCCCcccch-----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD------------------TSNEIGGDGDIPHSA----- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~------------------~~~~~~~~~~~~~~~----- 60 (224)
-.+++|++++|+|+||||||||+++|+|+++|+ .|.|.+.+ +...+.......++.
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 104 (218)
T cd03266 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD-AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAG 104 (218)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC-CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHH
Confidence 368899999999999999999999999999887 56665422 111111100000000
Q ss_pred -------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH
Q 027392 61 -------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE 110 (224)
Q Consensus 61 -------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~ 110 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||... +.++++
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 184 (218)
T cd03266 105 LYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA 184 (218)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH
Confidence 001122222 36999999999999999999999999999999643 344555
Q ss_pred cCCEEEEEEeCcchHHhhccceeeeccCCeeEEE
Q 027392 111 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 144 (224)
Q Consensus 111 ~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~ 144 (224)
+|.|+|++||+.+++..+||+++. + .+|+++.
T Consensus 185 ~~~tii~~tH~~~~~~~~~d~i~~-l-~~G~i~~ 216 (218)
T cd03266 185 LGKCILFSTHIMQEVERLCDRVVV-L-HRGRVVY 216 (218)
T ss_pred CCCEEEEEeCCHHHHHHhcCEEEE-E-ECCEEee
Confidence 689999999999988999999974 4 4455543
No 65
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=5.2e-28 Score=194.68 Aligned_cols=130 Identities=16% Similarity=0.223 Sum_probs=97.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-c-----------ccCCCCcccch--hhHHhHcCC
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-E-----------IGGDGDIPHSA--IGTARRMQV 69 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-~-----------~~~~~~~~~~~--~~~~~~~~~ 69 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+..- . +.+....+... ....+.+..
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD-SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheee
Confidence 368999999999999999999999999999887 67776533210 0 00000000000 111233333
Q ss_pred -CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHc-CCEEEEEEeCcchHHhhccceee
Q 027392 70 -PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 70 -~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
.|+||+||++||++++.+|+++||||||++||... +.+++++ +.|+|++||+.++...+||+++.
T Consensus 100 ~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 173 (178)
T cd03229 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVV 173 (178)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 78999999999999999999999999999999643 3455555 78999999999988889999864
No 66
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.95 E-value=4.8e-28 Score=195.22 Aligned_cols=136 Identities=17% Similarity=0.285 Sum_probs=99.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc-cc------CCCCcccchh---hH----HhHcCC
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-IG------GDGDIPHSAI---GT----ARRMQV 69 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~-~~------~~~~~~~~~~---~~----~~~~~~ 69 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+.+-. .. .....++ .. +. .....-
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~-~G~v~~~g~~~~~~~~~~~~~~i~~~~q-~l~~~gl~~~~~~~~~~ 97 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDGKDLASLSPKELARKIAYVPQ-ALELLGLAHLADRPFNE 97 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCcCCHHHHHHHHhHHHH-HHHHcCCHhHhcCCccc
Confidence 368899999999999999999999999999987 688776432110 00 0000110 00 00 011223
Q ss_pred CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHc-CCEEEEEEeCcchHHhhccceeeeccCCee
Q 027392 70 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVD 141 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~ 141 (224)
.|+||+||+++|++++.+|+++||||||++||... +.+++++ +.|+|++||+.++...+||+++. +. +++
T Consensus 98 LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~-l~-~g~ 175 (180)
T cd03214 98 LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVIL-LK-DGR 175 (180)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EE-CCE
Confidence 57999999999999999999999999999999543 3444555 78999999999988889999974 43 444
Q ss_pred EE
Q 027392 142 TV 143 (224)
Q Consensus 142 ~v 143 (224)
++
T Consensus 176 i~ 177 (180)
T cd03214 176 IV 177 (180)
T ss_pred EE
Confidence 44
No 67
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.2e-27 Score=196.99 Aligned_cols=138 Identities=22% Similarity=0.213 Sum_probs=99.1
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE---------------cCCCcccCCCCcccch--------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV---------------DTSNEIGGDGDIPHSA-------- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~---------------~~~~~~~~~~~~~~~~-------- 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+. .+...+.......++.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 99 (210)
T cd03269 21 FSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD-SGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG 99 (210)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC
Confidence 368999999999999999999999999999887 5665542 2221111100000000
Q ss_pred ----------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCC
Q 027392 61 ----------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGV 113 (224)
Q Consensus 61 ----------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~ 113 (224)
....+.+++ .|+||+||+++|++++.+|+++||||||++||... ++++++++.
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~ 179 (210)
T cd03269 100 LKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179 (210)
T ss_pred CChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCC
Confidence 001122222 36999999999999999999999999999999543 344555688
Q ss_pred EEEEEEeCcchHHhhccceeeeccCCeeEEE
Q 027392 114 MLIGTAHGEWLENIIKNPILSDLIGGVDTVT 144 (224)
Q Consensus 114 tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~ 144 (224)
|||++||+.++...+||+++. + .+++++.
T Consensus 180 tii~~sH~~~~~~~~~d~i~~-l-~~g~i~~ 208 (210)
T cd03269 180 TVILSTHQMELVEELCDRVLL-L-NKGRAVL 208 (210)
T ss_pred EEEEECCCHHHHHHhhhEEEE-E-eCCEEEe
Confidence 999999999988889999974 4 4455543
No 68
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.95 E-value=1.3e-27 Score=199.86 Aligned_cols=142 Identities=15% Similarity=0.196 Sum_probs=101.4
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC--------------CCcccCCCCcccc---------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--------------SNEIGGDGDIPHS--------- 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~--------------~~~~~~~~~~~~~--------- 59 (224)
+-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.++ ...+.......++
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~ 83 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT-SGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVL 83 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcc
Confidence 3468999999999999999999999999999887 577655321 1111100000000
Q ss_pred -----------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-
Q 027392 60 -----------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE- 110 (224)
Q Consensus 60 -----------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~- 110 (224)
.....+.+++ .|+||+||++||++++.+|++|||||||++||... +.++.+
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 163 (230)
T TIGR01184 84 PDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE 163 (230)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 0001122222 37999999999999999999999999999999543 334444
Q ss_pred cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCC
Q 027392 111 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 147 (224)
Q Consensus 111 ~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~ 147 (224)
.|.|||++||+.++...+||+++ ++.+|+++..++
T Consensus 164 ~~~tii~~sH~~~~~~~~~d~v~--~l~~G~i~~~~~ 198 (230)
T TIGR01184 164 HRVTVLMVTHDVDEALLLSDRVV--MLTNGPAANIGQ 198 (230)
T ss_pred cCCEEEEEeCCHHHHHHhcCEEE--EEeCCcEecccC
Confidence 48899999999998899999997 445566665543
No 69
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.2e-27 Score=206.29 Aligned_cols=146 Identities=16% Similarity=0.186 Sum_probs=106.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------------CCCc-ccCCCCcccc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------------TSNE-IGGDGDIPHS 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------------~~~~-~~~~~~~~~~ 59 (224)
-.+++||+++|+||||||||||+++|+|+++|+ .|.|.+.+ +... ..+...+.++
T Consensus 28 l~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~ 106 (287)
T PRK13641 28 FELEEGSFVALVGHTGSGKSTLMQHFNALLKPS-SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKD 106 (287)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHH
Confidence 368999999999999999999999999999987 56555422 1110 0000000000
Q ss_pred h------------------hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH------
Q 027392 60 A------------------IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------ 104 (224)
Q Consensus 60 ~------------------~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------ 104 (224)
. ....+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~ 186 (287)
T PRK13641 107 VEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQ 186 (287)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 0 000112222 36999999999999999999999999999999643
Q ss_pred -HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 -CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 -~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++++++.|.|||++||+++++..+||+++ ++++|+++..++++...
T Consensus 187 ~l~~l~~~g~tvlivsH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 187 LFKDYQKAGHTVILVTHNMDDVAEYADDVL--VLEHGKLIKHASPKEIF 233 (287)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHh
Confidence 44555668999999999999999999997 44667788888877654
No 70
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.3e-27 Score=204.91 Aligned_cols=144 Identities=15% Similarity=0.232 Sum_probs=105.7
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCc--ccCCCCcccch-
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNE--IGGDGDIPHSA- 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~--~~~~~~~~~~~- 60 (224)
+-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +... +.. ..+..+.
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~e~l~ 102 (274)
T PRK13647 25 SLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ-RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFS-STVWDDVA 102 (274)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhcc-CcHHHHHH
Confidence 3478999999999999999999999999999887 56665422 2110 000 0000000
Q ss_pred -----------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 61 -----------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 61 -----------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
....+.+++ .|+||+||++||+|++.+|++|||||||++||... +.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~ 182 (274)
T PRK13647 103 FGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILD 182 (274)
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 001122222 36999999999999999999999999999999643 44
Q ss_pred HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHH
Q 027392 107 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 150 (224)
Q Consensus 107 ~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~ 150 (224)
+++++|.|||++||+++++..+||+++ ++++|+++..++++.
T Consensus 183 ~~~~~g~tili~tH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 183 RLHNQGKTVIVATHDVDLAAEWADQVI--VLKEGRVLAEGDKSL 224 (274)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHH
Confidence 555568999999999998888999997 446677888877753
No 71
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.6e-27 Score=205.56 Aligned_cols=147 Identities=14% Similarity=0.206 Sum_probs=107.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE---------------------cCCCccc-CCCCcccc--
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV---------------------DTSNEIG-GDGDIPHS-- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~---------------------~~~~~~~-~~~~~~~~-- 59 (224)
-.|++||+++|+||||||||||+++|+|+++|+ .|.|.+. .|..... +...+..+
T Consensus 28 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~ 106 (287)
T PRK13637 28 IEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT-SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIA 106 (287)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHH
Confidence 368999999999999999999999999999887 5655442 2211000 00000000
Q ss_pred ----------------hhhHHhHcCC------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------
Q 027392 60 ----------------AIGTARRMQV------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------- 104 (224)
Q Consensus 60 ----------------~~~~~~~~~~------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------- 104 (224)
.....+.+++ .|+||+||++||+||+.+|++|||||||++||+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~ 186 (287)
T PRK13637 107 FGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK 186 (287)
T ss_pred hHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 0001122232 36899999999999999999999999999999643
Q ss_pred HHHHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 CRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 ~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+.+++++ |.|||++||+++++..+||+++ ++.+|+++..++++..+.
T Consensus 187 l~~l~~~~g~tvi~vtHd~~~~~~~~drv~--~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 187 IKELHKEYNMTIILVSHSMEDVAKLADRII--VMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHh
Confidence 4455544 8999999999998888999997 445678888888876653
No 72
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.95 E-value=1.2e-27 Score=197.50 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=95.1
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc----------------------CCCcccCCCCcccch-
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD----------------------TSNEIGGDGDIPHSA- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~----------------------~~~~~~~~~~~~~~~- 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+........+.
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 101 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS-RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVA 101 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHH
Confidence 368999999999999999999999999999887 56665422 111110000000000
Q ss_pred -----------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 61 -----------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 61 -----------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||... ++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 181 (214)
T TIGR02673 102 LPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLK 181 (214)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 001122222 36999999999999999999999999999999643 34
Q ss_pred HHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 107 SIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 107 ~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
++++++.|+|++||+.++...+||+++.
T Consensus 182 ~~~~~~~tii~~tH~~~~~~~~~d~i~~ 209 (214)
T TIGR02673 182 RLNKRGTTVIVATHDLSLVDRVAHRVII 209 (214)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 4555689999999999989999999964
No 73
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.95 E-value=9.3e-28 Score=192.39 Aligned_cols=127 Identities=20% Similarity=0.276 Sum_probs=93.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-cc-----c-CCCCcccch--h--hHHhHcCCCCc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EI-----G-GDGDIPHSA--I--GTARRMQVPEP 72 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-~~-----~-~~~~~~~~~--~--~~~~~~~~~~~ 72 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+..- .. . ....++++. + ...+. +.|+
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~--lLS~ 99 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLLRPT-SGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAEN--ILSG 99 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHH--CcCH
Confidence 368899999999999999999999999999987 67776532110 00 0 000001100 0 11122 2689
Q ss_pred cHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 73 SLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 73 g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
||+||++||++++.+|++|||||||++||... +++++++|.|+|++||+.++.. .||+++.
T Consensus 100 G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~ 167 (173)
T cd03246 100 GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILV 167 (173)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEE
Confidence 99999999999999999999999999999543 3445556899999999998775 7999864
No 74
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.95 E-value=1.8e-27 Score=197.32 Aligned_cols=144 Identities=15% Similarity=0.195 Sum_probs=103.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc--------------------CCCcccCCCCcccch---
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD--------------------TSNEIGGDGDIPHSA--- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~--------------------~~~~~~~~~~~~~~~--- 60 (224)
-.+.+|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+.......++.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 99 (222)
T cd03224 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR-SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLG 99 (222)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHH
Confidence 368899999999999999999999999999887 56665432 111100000000000
Q ss_pred -------------hhHHhHc-----------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH
Q 027392 61 -------------IGTARRM-----------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA 109 (224)
Q Consensus 61 -------------~~~~~~~-----------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~ 109 (224)
....+.+ .-.|+||+||++||++++.+|++|||||||++||... +++++
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 179 (222)
T cd03224 100 AYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179 (222)
T ss_pred hhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence 0001112 1137999999999999999999999999999999543 34455
Q ss_pred HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHH
Q 027392 110 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 150 (224)
Q Consensus 110 ~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~ 150 (224)
+++.|+|++||+.++...+||+++ ++.+|+++..++.+.
T Consensus 180 ~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~ 218 (222)
T cd03224 180 DEGVTILLVEQNARFALEIADRAY--VLERGRVVLEGTAAE 218 (222)
T ss_pred HCCCEEEEEeCCHHHHHHhccEEE--EeeCCeEEEeCCHHH
Confidence 568999999999998899999997 445567776665543
No 75
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.95 E-value=1.1e-27 Score=218.23 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=119.7
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC------------cccC------CCCcccchh--
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN------------EIGG------DGDIPHSAI-- 61 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~------------~~~~------~~~~~~~~~-- 61 (224)
|+-.+.+||+++|+|++|||||||.|+|+|+++|+ +|.+.+.+.+- .++. ....|....
T Consensus 310 VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~-~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~ 388 (539)
T COG1123 310 VSFDLREGETLGLVGESGSGKSTLARILAGLLPPS-SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGD 388 (539)
T ss_pred eeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHH
Confidence 34568999999999999999999999999999997 78888765430 0000 000011000
Q ss_pred ----------------------hHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhH------
Q 027392 62 ----------------------GTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA------ 102 (224)
Q Consensus 62 ----------------------~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~------ 102 (224)
...+.+++ .||||+||++||+||+.+|++||+|||++.||+
T Consensus 389 ~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~V 468 (539)
T COG1123 389 ILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQV 468 (539)
T ss_pred HHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHH
Confidence 00122222 269999999999999999999999999999994
Q ss_pred -HHHHHHH-HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhh
Q 027392 103 -HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILER 162 (224)
Q Consensus 103 -~~~~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~ 162 (224)
+.+.+++ +.|.|.+++|||+.++..+||+++ ++..|++|..|+.+.++..+......+
T Consensus 469 lnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~--vm~~G~iVE~G~~~~v~~~p~h~Ytr~ 528 (539)
T COG1123 469 LNLLKDLQEELGLTYLFISHDLAVVRYIADRVA--VMYDGRIVEEGPTEKVFENPQHPYTRK 528 (539)
T ss_pred HHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEE--EEECCeEEEeCCHHHHhcCCCChHHHH
Confidence 3455565 459999999999999999999997 677899999999998887765554443
No 76
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.95 E-value=2e-27 Score=201.93 Aligned_cols=140 Identities=15% Similarity=0.158 Sum_probs=100.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE--------------EcCCCcccCCCCcccc----------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--------------VDTSNEIGGDGDIPHS---------- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~--------------~~~~~~~~~~~~~~~~---------- 59 (224)
-.|++|++++|+||||||||||+++|+|+++|+ .|.+.+ +.+...+.....+.++
T Consensus 33 l~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~ 111 (257)
T PRK11247 33 LHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS-AGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWR 111 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHH
Confidence 468999999999999999999999999999887 565543 2222211110000000
Q ss_pred --hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH-HcCCEEEEEE
Q 027392 60 --AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA-ERGVMLIGTA 119 (224)
Q Consensus 60 --~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~-~~g~tvi~~t 119 (224)
.....+.+++ .|+||+||++||++++.+|++|||||||++||... +.++. +.+.|||++|
T Consensus 112 ~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivs 191 (257)
T PRK11247 112 DAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT 191 (257)
T ss_pred HHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 0111222333 37999999999999999999999999999999653 33443 3489999999
Q ss_pred eCcchHHhhccceeeeccCCeeEEEcC
Q 027392 120 HGEWLENIIKNPILSDLIGGVDTVTLG 146 (224)
Q Consensus 120 H~~~~~~~~~d~v~~~l~~~~~~v~~~ 146 (224)
|+.++...+||+++. + .+|+++..+
T Consensus 192 Hd~~~~~~~~d~i~~-l-~~G~i~~~~ 216 (257)
T PRK11247 192 HDVSEAVAMADRVLL-I-EEGKIGLDL 216 (257)
T ss_pred CCHHHHHHhCCEEEE-E-ECCEEEeec
Confidence 999988889999974 4 446666543
No 77
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.95 E-value=1e-27 Score=198.41 Aligned_cols=129 Identities=19% Similarity=0.241 Sum_probs=93.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------------CCCcccCCCCcccc-
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------------TSNEIGGDGDIPHS- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------------~~~~~~~~~~~~~~- 59 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +...+.....+.++
T Consensus 25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 103 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT-SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENV 103 (218)
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC-ceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHH
Confidence 368999999999999999999999999999887 56665422 11111000000000
Q ss_pred -----------------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 60 -----------------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 60 -----------------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
.....+.+++ .|+||+||++||++++.+|++|||||||++||+.. +
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l 183 (218)
T cd03255 104 ELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELL 183 (218)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 0001122222 36999999999999999999999999999999643 3
Q ss_pred HHHHH-cCCEEEEEEeCcchHHhhccceee
Q 027392 106 RSIAE-RGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 106 ~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
.++++ .+.|||++||+.++.. +||+++.
T Consensus 184 ~~~~~~~~~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 184 RELNKEAGTTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred HHHHHhcCCeEEEEECCHHHHh-hhcEEEE
Confidence 44555 5899999999998887 8999863
No 78
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.7e-27 Score=199.14 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=106.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCC---------CC
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGD---------GD 55 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~---------~~ 55 (224)
-.+.+|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +...+... ..
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 102 (241)
T PRK14250 24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT-EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPM 102 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchh
Confidence 468899999999999999999999999999887 56665432 11111000 00
Q ss_pred cc-c---chhhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-cC
Q 027392 56 IP-H---SAIGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RG 112 (224)
Q Consensus 56 ~~-~---~~~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~-~g 112 (224)
.. . ......+.+++ .|+||+||++||+|++.+|++|||||||++||... ++++++ .|
T Consensus 103 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g 182 (241)
T PRK14250 103 LKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN 182 (241)
T ss_pred hcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC
Confidence 00 0 00011122222 36999999999999999999999999999999653 344444 48
Q ss_pred CEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 113 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 113 ~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
.|||++||+.++...+||+++ ++.+|+++..+++...+.
T Consensus 183 ~tii~~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 183 LTVIWITHNMEQAKRIGDYTA--FLNKGILVEYAKTYDFFT 221 (241)
T ss_pred CEEEEEeccHHHHHHhCCEEE--EEeCCEEEEeCCHHHHhc
Confidence 999999999998889999997 445577788877776553
No 79
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.95 E-value=2e-27 Score=210.52 Aligned_cols=149 Identities=13% Similarity=0.125 Sum_probs=108.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------------CCCcccCCCCcccch
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------------TSNEIGGDGDIPHSA 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------------~~~~~~~~~~~~~~~ 60 (224)
-.+++|++++|+||||||||||+|+|+|+++|+ .|.+.+.+ +...+.....+.++.
T Consensus 18 l~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~-~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl 96 (354)
T TIGR02142 18 FTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD-EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNL 96 (354)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHH
Confidence 368999999999999999999999999999887 56665422 111111000000000
Q ss_pred ----------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHH
Q 027392 61 ----------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRS 107 (224)
Q Consensus 61 ----------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~ 107 (224)
....+.+++ .|+||+||++||+|++.+|++|||||||++||... +++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~ 176 (354)
T TIGR02142 97 RYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER 176 (354)
T ss_pred HHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 001122333 37999999999999999999999999999999653 444
Q ss_pred HHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHh
Q 027392 108 IAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 155 (224)
Q Consensus 108 ~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~ 155 (224)
++++ |.|+|++||+.+++..+||+++ ++.+|+++..++++..+..+
T Consensus 177 l~~~~g~tiiivtH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 177 LHAEFGIPILYVSHSLQEVLRLADRVV--VLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred HHHhcCCEEEEEecCHHHHHHhCCEEE--EEeCCEEEEECCHHHHhcCc
Confidence 5544 8999999999998999999997 55667888888887766443
No 80
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=2.8e-27 Score=198.72 Aligned_cols=146 Identities=14% Similarity=0.207 Sum_probs=105.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc---------------------CCCcccCCCCcccch--
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD---------------------TSNEIGGDGDIPHSA-- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~---------------------~~~~~~~~~~~~~~~-- 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +...+.....+..+.
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 100 (240)
T PRK09493 22 LNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT-SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMF 100 (240)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHh
Confidence 368899999999999999999999999999887 56655422 111110000000000
Q ss_pred -----------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 61 -----------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 61 -----------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
....+.+++ .|+||+||++||++++.+|+++||||||++||... +.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 180 (240)
T PRK09493 101 GPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQ 180 (240)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 001122222 36899999999999999999999999999999653 34
Q ss_pred HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 107 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 107 ~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++++++.|+|++||+.++...+||+++ ++.+|+++..++.....
T Consensus 181 ~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 181 DLAEEGMTMVIVTHEIGFAEKVASRLI--FIDKGRIAEDGDPQVLI 224 (240)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEeeCCHHHHh
Confidence 455568999999999999989999997 44557777777766543
No 81
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.95 E-value=2.1e-27 Score=196.82 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=101.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc------------------CCCcccCCCCcccch-----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD------------------TSNEIGGDGDIPHSA----- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~------------------~~~~~~~~~~~~~~~----- 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+.......++.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 101 (220)
T cd03263 23 LNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT-SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYAR 101 (220)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHH
Confidence 368999999999999999999999999999887 56665422 111111000000000
Q ss_pred -------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH
Q 027392 61 -------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE 110 (224)
Q Consensus 61 -------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~ 110 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||... ++++++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 181 (220)
T cd03263 102 LKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK 181 (220)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc
Confidence 001122222 36899999999999999999999999999999653 333433
Q ss_pred cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHH
Q 027392 111 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEE 149 (224)
Q Consensus 111 ~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~ 149 (224)
+.|+|++||+.+++..+||+++ ++.+|+++..++++
T Consensus 182 -~~tii~~sH~~~~~~~~~d~i~--~l~~g~i~~~~~~~ 217 (220)
T cd03263 182 -GRSIILTTHSMDEAEALCDRIA--IMSDGKLRCIGSPQ 217 (220)
T ss_pred -CCEEEEEcCCHHHHHHhcCEEE--EEECCEEEecCCHH
Confidence 5899999999998888999997 44556777766554
No 82
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.9e-27 Score=199.37 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=106.9
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc--------------------CCCcccCCCCcccc---
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD--------------------TSNEIGGDGDIPHS--- 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~--------------------~~~~~~~~~~~~~~--- 59 (224)
+-.+++||+++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+.....+.++
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 103 (237)
T PRK11614 25 SLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT-SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAM 103 (237)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHH
Confidence 3468999999999999999999999999999887 56655432 11111000000000
Q ss_pred ---------h----hhHHhHc-----------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHH
Q 027392 60 ---------A----IGTARRM-----------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSI 108 (224)
Q Consensus 60 ---------~----~~~~~~~-----------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~ 108 (224)
. ....+.+ .-.|+||+||++||++++.+|++|||||||++||... ++++
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~ 183 (237)
T PRK11614 104 GGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL 183 (237)
T ss_pred hhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 0 0000111 1137999999999999999999999999999999653 3445
Q ss_pred HHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 109 AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 109 ~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+++|.|+|++||+.++...+||+++ ++.+|+++..++++...
T Consensus 184 ~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 184 REQGMTIFLVEQNANQALKLADRGY--VLENGHVVLEDTGDALL 225 (237)
T ss_pred HHCCCEEEEEeCcHHHHHhhCCEEE--EEeCCEEEeeCCHHHHh
Confidence 5668999999999998899999997 45567788888877654
No 83
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.8e-27 Score=200.82 Aligned_cols=140 Identities=16% Similarity=0.161 Sum_probs=100.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE--------------cCCCcccCCCCcccc----------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV--------------DTSNEIGGDGDIPHS---------- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~--------------~~~~~~~~~~~~~~~---------- 59 (224)
-.|++|++++|+||||||||||+++|+|+++|+ .|.+.+. .+...+.....+..+
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 100 (255)
T PRK11248 22 LTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ-HGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGV 100 (255)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCC
Confidence 368999999999999999999999999999887 5666542 222111110000000
Q ss_pred --------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH-HcCC
Q 027392 60 --------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA-ERGV 113 (224)
Q Consensus 60 --------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~-~~g~ 113 (224)
.....+.+++ .|+||+||++||++++.+|++|||||||++||... +.++. +.|.
T Consensus 101 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~ 180 (255)
T PRK11248 101 EKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGK 180 (255)
T ss_pred CHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence 0011122222 36999999999999999999999999999999653 34443 3489
Q ss_pred EEEEEEeCcchHHhhccceeeeccC-CeeEEEc
Q 027392 114 MLIGTAHGEWLENIIKNPILSDLIG-GVDTVTL 145 (224)
Q Consensus 114 tvi~~tH~~~~~~~~~d~v~~~l~~-~~~~v~~ 145 (224)
|||++||+.+++..+||+++. +.+ +|+++..
T Consensus 181 tviivsH~~~~~~~~~d~i~~-l~~~~G~i~~~ 212 (255)
T PRK11248 181 QVLLITHDIEEAVFMATELVL-LSPGPGRVVER 212 (255)
T ss_pred EEEEEeCCHHHHHHhCCEEEE-EeCCCcEEEEE
Confidence 999999999999999999975 543 4666654
No 84
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.4e-27 Score=200.75 Aligned_cols=146 Identities=15% Similarity=0.168 Sum_probs=105.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc--------------------CCCcccCCCCcccc----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD--------------------TSNEIGGDGDIPHS---- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~--------------------~~~~~~~~~~~~~~---- 59 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +...+.....+..+
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 104 (255)
T PRK11300 26 LEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT-GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVA 104 (255)
T ss_pred eEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC-cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHh
Confidence 368899999999999999999999999999887 56554422 11111100000000
Q ss_pred -----------------------------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChH
Q 027392 60 -----------------------------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 100 (224)
Q Consensus 60 -----------------------------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~l 100 (224)
.....+.+++ .|+||+||++||++++.+|++|||||||++|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 184 (255)
T PRK11300 105 QHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGL 184 (255)
T ss_pred hhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCC
Confidence 0000112232 3699999999999999999999999999999
Q ss_pred hHHH-------HHHHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 101 EAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 101 D~~~-------~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
|... +.+++++ +.|||++||+.+++..+||+++ ++.+|+++..++++...
T Consensus 185 D~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 185 NPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIY--VVNQGTPLANGTPEEIR 242 (255)
T ss_pred CHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEE--EEECCeEEecCCHHHHh
Confidence 9543 3445554 8999999999999999999997 44567777777776543
No 85
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.5e-27 Score=209.23 Aligned_cols=150 Identities=15% Similarity=0.181 Sum_probs=110.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc----------------------CCCc--ccCCCCccc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD----------------------TSNE--IGGDGDIPH 58 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~----------------------~~~~--~~~~~~~~~ 58 (224)
+-.|++||+++|+|+||||||||+++|+|+++|+ .|.|.+.+ |+.. +.....+..
T Consensus 35 sl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~-~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~ 113 (327)
T PRK11308 35 SFTLERGKTLAVVGESGCGKSTLARLLTMIETPT-GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQ 113 (327)
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC-CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHH
Confidence 3468999999999999999999999999999887 56665432 2110 000000000
Q ss_pred c-------------------hhhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-----
Q 027392 59 S-------------------AIGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH----- 103 (224)
Q Consensus 59 ~-------------------~~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~----- 103 (224)
+ .....+.+++ .|+||+||++||+||+.+|++||+||||++||..
T Consensus 114 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i 193 (327)
T PRK11308 114 ILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQV 193 (327)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHH
Confidence 0 0001222222 3699999999999999999999999999999954
Q ss_pred --HHHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHh
Q 027392 104 --ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 155 (224)
Q Consensus 104 --~~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~ 155 (224)
.+.++++ .|.|+|++||++.++..+||+++ ++..|+++..++.+.++..+
T Consensus 194 ~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~--vm~~G~ive~g~~~~~~~~p 246 (327)
T PRK11308 194 LNLMMDLQQELGLSYVFISHDLSVVEHIADEVM--VMYLGRCVEKGTKEQIFNNP 246 (327)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHhcCC
Confidence 3445554 48999999999999999999997 56678899999888776543
No 86
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.95 E-value=3.1e-27 Score=197.14 Aligned_cols=145 Identities=14% Similarity=0.160 Sum_probs=104.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc--------------------CCCcccCCCCcccch---
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD--------------------TSNEIGGDGDIPHSA--- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~--------------------~~~~~~~~~~~~~~~--- 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+.......++.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 99 (230)
T TIGR03410 21 LEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK-SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTG 99 (230)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHH
Confidence 468899999999999999999999999999887 56665432 111110000000000
Q ss_pred ------------hhHHhHcC-----------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH
Q 027392 61 ------------IGTARRMQ-----------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE 110 (224)
Q Consensus 61 ------------~~~~~~~~-----------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~ 110 (224)
....+.++ -.|+||+||++||++++.+|+++||||||++||... +.++++
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 179 (230)
T TIGR03410 100 LAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179 (230)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 00011111 137999999999999999999999999999999653 344454
Q ss_pred c-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHH
Q 027392 111 R-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 151 (224)
Q Consensus 111 ~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~ 151 (224)
+ +.|+|++||+.+++..+||+++ ++.+|+++..++.+.+
T Consensus 180 ~~~~tii~~sH~~~~~~~~~d~v~--~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 180 EGGMAILLVEQYLDFARELADRYY--VMERGRVVASGAGDEL 219 (230)
T ss_pred cCCcEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHc
Confidence 3 8999999999999999999997 4455777877776654
No 87
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=2.1e-27 Score=194.64 Aligned_cols=149 Identities=14% Similarity=0.191 Sum_probs=113.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC--------------------CCcccCCCCcccc---
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--------------------SNEIGGDGDIPHS--- 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~--------------------~~~~~~~~~~~~~--- 59 (224)
+-.+++||+++|+|+||||||||||+|+|+.++. .|+|.+.++ ...++....+.++
T Consensus 23 sl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~-~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~ 101 (237)
T COG0410 23 SLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR-SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLL 101 (237)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhh
Confidence 4478999999999999999999999999999986 576665332 2222211111000
Q ss_pred -----------------hhhH--------HhHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHH
Q 027392 60 -----------------AIGT--------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRS 107 (224)
Q Consensus 60 -----------------~~~~--------~~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~ 107 (224)
.+.. .++-+..|||+||.+++||||+.+|++|+||||+.||-+.. +++
T Consensus 102 g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~ 181 (237)
T COG0410 102 GAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE 181 (237)
T ss_pred hhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHH
Confidence 0100 12234458999999999999999999999999999998654 456
Q ss_pred HHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHH
Q 027392 108 IAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 154 (224)
Q Consensus 108 ~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~ 154 (224)
++++ |.||+++.++..++..++|+.+ ++..|++++.|+++.....
T Consensus 182 l~~~~g~tIlLVEQn~~~Al~iaDr~y--vle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 182 LRKEGGMTILLVEQNARFALEIADRGY--VLENGRIVLSGTAAELLAD 227 (237)
T ss_pred HHHcCCcEEEEEeccHHHHHHhhCEEE--EEeCCEEEEecCHHHHhcC
Confidence 6655 7899999999999999999997 6667889999998876643
No 88
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.95 E-value=3.4e-27 Score=192.58 Aligned_cols=138 Identities=18% Similarity=0.168 Sum_probs=99.1
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcC--CccCCCeEEEEcCCC-------cccCCC----Ccccch----hhHHhH
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQKRVVIVDTSN-------EIGGDG----DIPHSA----IGTARR 66 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l--~~~~~~~i~~~~~~~-------~~~~~~----~~~~~~----~~~~~~ 66 (224)
-.+++|++++|+||||||||||+++|+|++ +|. .|.+.+.+... .+++.. .++... ......
T Consensus 30 ~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~ 108 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV-SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK 108 (194)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-ceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHH
Confidence 468999999999999999999999999999 877 67766532210 111110 011100 011112
Q ss_pred cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcc-hHHhhccceeeeccC
Q 027392 67 MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEW-LENIIKNPILSDLIG 138 (224)
Q Consensus 67 ~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~-~~~~~~d~v~~~l~~ 138 (224)
+.-.|+||+||++||++++.+|+++||||||++||... ++++.+++.|+|++||+.. +...+||+++. + .
T Consensus 109 ~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~-l-~ 186 (194)
T cd03213 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLL-L-S 186 (194)
T ss_pred hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEE-E-e
Confidence 22468999999999999999999999999999999543 3445556899999999986 67788999974 4 4
Q ss_pred CeeEEE
Q 027392 139 GVDTVT 144 (224)
Q Consensus 139 ~~~~v~ 144 (224)
+|+++.
T Consensus 187 ~G~i~~ 192 (194)
T cd03213 187 QGRVIY 192 (194)
T ss_pred CCEEEe
Confidence 455543
No 89
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.95 E-value=1.9e-27 Score=196.29 Aligned_cols=130 Identities=17% Similarity=0.227 Sum_probs=95.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE--------------EcCCCccc--CCCCcc----------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--------------VDTSNEIG--GDGDIP---------- 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~--------------~~~~~~~~--~~~~~~---------- 57 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+ +.+..... +.....
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~ 98 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT-SGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGH 98 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccc
Confidence 468999999999999999999999999999887 565543 33322210 000000
Q ss_pred --------cc----hhhHHhHcC----------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHH
Q 027392 58 --------HS----AIGTARRMQ----------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSI 108 (224)
Q Consensus 58 --------~~----~~~~~~~~~----------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~ 108 (224)
.. .....+.++ -.|+||+||++||++++.+|++|||||||++||... +.++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 178 (213)
T cd03235 99 KGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178 (213)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 00 000112222 247999999999999999999999999999999653 3445
Q ss_pred HHcCCEEEEEEeCcchHHhhccceee
Q 027392 109 AERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 109 ~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
++++.|+|++||+.++...+||+++.
T Consensus 179 ~~~~~tvi~~sH~~~~~~~~~d~i~~ 204 (213)
T cd03235 179 RREGMTILVVTHDLGLVLEYFDRVLL 204 (213)
T ss_pred HhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 55689999999999999999999974
No 90
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.95 E-value=4e-27 Score=197.42 Aligned_cols=146 Identities=13% Similarity=0.220 Sum_probs=104.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc------------------CCCcccCCCCcccch-----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD------------------TSNEIGGDGDIPHSA----- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~------------------~~~~~~~~~~~~~~~----- 60 (224)
-.|++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +...+.......++.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 100 (236)
T TIGR03864 22 FTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ-EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAA 100 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHH
Confidence 368999999999999999999999999999887 56655422 111110000000000
Q ss_pred -------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH
Q 027392 61 -------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE 110 (224)
Q Consensus 61 -------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~ 110 (224)
....+.+++ .|+||+||++||++++.+|+++||||||++||... +.++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 180 (236)
T TIGR03864 101 LHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCR 180 (236)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHH
Confidence 001122332 36999999999999999999999999999999653 344443
Q ss_pred -cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 111 -RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 111 -~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+|.|+|++||+.++... ||+++ ++.+|+++..++++....
T Consensus 181 ~~~~tiii~sH~~~~~~~-~d~i~--~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 181 DQGLSVLWATHLVDEIEA-DDRLV--VLHRGRVLADGAAAELRG 221 (236)
T ss_pred hCCCEEEEEecChhhHhh-CCEEE--EEeCCeEEEeCCHHHHHH
Confidence 58999999999988864 99997 445677777777766543
No 91
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=1.1e-28 Score=198.26 Aligned_cols=150 Identities=19% Similarity=0.246 Sum_probs=115.7
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCccc--------CCCCcccch------------h
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG--------GDGDIPHSA------------I 61 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~--------~~~~~~~~~------------~ 61 (224)
++-.|++||+++|+|||||||||.+.++.|+.+|+ +|+|.+-+.+-... ..++.|+.. .
T Consensus 23 Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d-~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~ 101 (243)
T COG1137 23 VSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD-SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIM 101 (243)
T ss_pred eeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC-CceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHH
Confidence 35578999999999999999999999999999999 68877644321000 011222210 0
Q ss_pred --------------------hHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------H
Q 027392 62 --------------------GTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------A 104 (224)
Q Consensus 62 --------------------~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~ 104 (224)
...+.+.+ .|||+++|+.|||||+.+|++++||||++|.|+- .
T Consensus 102 ~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~i 181 (243)
T COG1137 102 AVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRI 181 (243)
T ss_pred HHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHH
Confidence 00111221 3699999999999999999999999999999954 3
Q ss_pred HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHH
Q 027392 105 CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 154 (224)
Q Consensus 105 ~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~ 154 (224)
+..++++|..|++|-|+..+...+|||.+ +++.|+++..|+++.+...
T Consensus 182 I~~L~~rgiGvLITDHNVREtL~i~dRaY--Ii~~G~vla~G~p~ei~~n 229 (243)
T COG1137 182 IKHLKDRGIGVLITDHNVRETLDICDRAY--IISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhCCceEEEccccHHHHHhhhheEE--EEecCeEEecCCHHHHhcC
Confidence 45678899999999999988999999997 6777889999999987754
No 92
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.95 E-value=3.7e-27 Score=201.43 Aligned_cols=147 Identities=16% Similarity=0.202 Sum_probs=106.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc----------------------CCCcccCCCCcccch
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD----------------------TSNEIGGDGDIPHSA 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~----------------------~~~~~~~~~~~~~~~ 60 (224)
+-.|++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +...+.....+.++.
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl 105 (269)
T PRK11831 27 SLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD-HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNV 105 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHH
Confidence 3468999999999999999999999999999887 56655422 111110000000000
Q ss_pred -------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------
Q 027392 61 -------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------- 104 (224)
Q Consensus 61 -------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------- 104 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 185 (269)
T PRK11831 106 AYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKL 185 (269)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 001122332 36999999999999999999999999999999653
Q ss_pred HHHHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 CRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 ~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++++.++ |.|||++||++++...+||+++ ++.+|+++..++++...
T Consensus 186 l~~~~~~~g~tiiivsH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 186 ISELNSALGVTCVVVSHDVPEVLSIADHAY--IVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCcEEEEEecCHHHHHHhhCEEE--EEECCEEEEeCCHHHHh
Confidence 3444444 8999999999998999999997 44557778777776654
No 93
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.95 E-value=3.4e-27 Score=196.11 Aligned_cols=142 Identities=15% Similarity=0.149 Sum_probs=103.1
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc---------------CCCcccCCCCcccch---------
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD---------------TSNEIGGDGDIPHSA--------- 60 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~---------------~~~~~~~~~~~~~~~--------- 60 (224)
.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+.......++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~ 100 (223)
T TIGR03740 22 TVPKNSVYGLLGPNGAGKSTLLKMITGILRPT-SGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGL 100 (223)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCC
Confidence 68899999999999999999999999999887 56555422 211111100100000
Q ss_pred -----hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEE
Q 027392 61 -----IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGT 118 (224)
Q Consensus 61 -----~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~ 118 (224)
....+.+++ .|+||+||+++|++++.+|++|+|||||++||... +.+++++|.|+|++
T Consensus 101 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~ 180 (223)
T TIGR03740 101 PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILS 180 (223)
T ss_pred CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 011122333 37999999999999999999999999999999653 34455568899999
Q ss_pred EeCcchHHhhccceeeeccCCeeEEEcCCHH
Q 027392 119 AHGEWLENIIKNPILSDLIGGVDTVTLGDEE 149 (224)
Q Consensus 119 tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~ 149 (224)
||+.++...+||+++. + .+|+++..+++.
T Consensus 181 sH~~~~~~~~~d~i~~-l-~~g~i~~~~~~~ 209 (223)
T TIGR03740 181 SHILSEVQQLADHIGI-I-SEGVLGYQGKIN 209 (223)
T ss_pred cCCHHHHHHhcCEEEE-E-eCCEEEEecChh
Confidence 9999988899999974 4 556777766654
No 94
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.95 E-value=2.5e-27 Score=208.07 Aligned_cols=150 Identities=19% Similarity=0.174 Sum_probs=110.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc----------------------CCC--cccCCCCccc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD----------------------TSN--EIGGDGDIPH 58 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~----------------------~~~--~~~~~~~~~~ 58 (224)
+-.|++||+++|+|+||||||||+++|+|+++|+ .|.|.+.+ |+. .+.....+.+
T Consensus 41 sl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~-~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~ 119 (331)
T PRK15079 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT-DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGE 119 (331)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC-CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHH
Confidence 3468999999999999999999999999999887 56665422 221 0100000000
Q ss_pred ch--------------------hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH----
Q 027392 59 SA--------------------IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH---- 103 (224)
Q Consensus 59 ~~--------------------~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~---- 103 (224)
+. ....+.+++ .|+||+||++||+|++.+|++||+||||++||..
T Consensus 120 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~ 199 (331)
T PRK15079 120 IIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQ 199 (331)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 00 001122222 3699999999999999999999999999999954
Q ss_pred ---HHHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHh
Q 027392 104 ---ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 155 (224)
Q Consensus 104 ---~~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~ 155 (224)
.++++++ .+.|+|++||++.++..+||+++ ++..|+++..++.+.++..+
T Consensus 200 i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~--vl~~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 200 VVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVL--VMYLGHAVELGTYDEVYHNP 253 (331)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHcCC
Confidence 3455554 48999999999999999999997 55667899998888766543
No 95
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=1.7e-27 Score=196.16 Aligned_cols=130 Identities=16% Similarity=0.222 Sum_probs=95.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcc-cCCCCcccch---
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEI-GGDGDIPHSA--- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~-~~~~~~~~~~--- 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +.... ........+.
T Consensus 22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~ 100 (211)
T cd03225 22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT-SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFG 100 (211)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHH
Confidence 368899999999999999999999999999887 56665422 11100 0000000000
Q ss_pred ---------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHH
Q 027392 61 ---------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSI 108 (224)
Q Consensus 61 ---------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~ 108 (224)
....+.+++ .|+||+||++||+|++.+|++|||||||++||... +.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 180 (211)
T cd03225 101 LENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180 (211)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 001112222 37999999999999999999999999999999643 3455
Q ss_pred HHcCCEEEEEEeCcchHHhhccceee
Q 027392 109 AERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 109 ~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
+++|.|||++||+.+++..+||+++.
T Consensus 181 ~~~~~tvi~~sH~~~~~~~~~d~i~~ 206 (211)
T cd03225 181 KAEGKTIIIVTHDLDLLLELADRVIV 206 (211)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 55689999999999989999999964
No 96
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.3e-27 Score=201.47 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=114.9
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCC-cc---CCCeEEEEcC-----------------------CCcccCCC-
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLS-DE---FQKRVVIVDT-----------------------SNEIGGDG- 54 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~-~~---~~~~i~~~~~-----------------------~~~~~~~~- 54 (224)
+-.+++||+++|+|.+||||||+.++|.|+++ +. .+|.+.|.++ ++......
T Consensus 25 s~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv 104 (316)
T COG0444 25 SFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPV 104 (316)
T ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCCh
Confidence 44689999999999999999999999999997 32 2345544332 11000000
Q ss_pred -C--------------c-cc-----chhhHHhHcCCC-------------CccHHHHHHHHHHHhcCCCEEEEeCCCChH
Q 027392 55 -D--------------I-PH-----SAIGTARRMQVP-------------EPSLQHKVMIEAVENHMPEVIIVDEIGTEA 100 (224)
Q Consensus 55 -~--------------~-~~-----~~~~~~~~~~~~-------------~~g~~qr~~la~al~~~p~llilDEp~~~l 100 (224)
. . .. ......+.++++ ||||+||++||.|++.+|++||.||||++|
T Consensus 105 ~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTAL 184 (316)
T COG0444 105 MTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184 (316)
T ss_pred hhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchh
Confidence 0 0 00 011112333332 699999999999999999999999999999
Q ss_pred hH-------HHHHHHH-HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHH
Q 027392 101 EA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSIL 160 (224)
Q Consensus 101 D~-------~~~~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 160 (224)
|. +.+++++ +.|.++|++|||+..+..+||++. ++..|++|+.|+.+.++..+.....
T Consensus 185 Dvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~--VMYaG~iVE~g~~~~i~~~P~HPYT 250 (316)
T COG0444 185 DVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVA--VMYAGRIVEEGPVEEIFKNPKHPYT 250 (316)
T ss_pred hHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEE--EEECcEEEEeCCHHHHhcCCCChHH
Confidence 94 3455666 469999999999999999999997 6778899999999988876654433
No 97
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.1e-27 Score=195.79 Aligned_cols=138 Identities=15% Similarity=0.150 Sum_probs=98.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-----------------EcCCCcccCCCCcccc-------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-----------------VDTSNEIGGDGDIPHS------- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-----------------~~~~~~~~~~~~~~~~------- 59 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+ +.+...+.......++
T Consensus 19 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~-~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~ 97 (211)
T cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ-SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSP 97 (211)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccc
Confidence 368999999999999999999999999999887 565543 2222211110000000
Q ss_pred -----------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-
Q 027392 60 -----------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE- 110 (224)
Q Consensus 60 -----------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~- 110 (224)
.....+.+++ .|+||+||+++|++++.+|++|||||||++||... ++++++
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 177 (211)
T cd03298 98 GLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE 177 (211)
T ss_pred ccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 0001122222 37999999999999999999999999999999643 344443
Q ss_pred cCCEEEEEEeCcchHHhhccceeeeccCCeeEEE
Q 027392 111 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 144 (224)
Q Consensus 111 ~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~ 144 (224)
.+.|+|++||+.++...+||+++. + ++|+++.
T Consensus 178 ~~~tii~~sH~~~~~~~~~d~i~~-l-~~G~i~~ 209 (211)
T cd03298 178 TKMTVLMVTHQPEDAKRLAQRVVF-L-DNGRIAA 209 (211)
T ss_pred cCCEEEEEecCHHHHHhhhCEEEE-E-ECCEEee
Confidence 489999999999999899999974 4 4455543
No 98
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.1e-27 Score=192.37 Aligned_cols=148 Identities=19% Similarity=0.269 Sum_probs=113.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-------------------cccCC---------C
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-------------------EIGGD---------G 54 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-------------------~~~~~---------~ 54 (224)
+-.+.+||+.+|+||||||||||||.|+|.+.|+ +|.+.+.+... .+.+. +
T Consensus 21 sl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~-~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mG 99 (259)
T COG4559 21 SLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD-SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMG 99 (259)
T ss_pred ceeccCCcEEEEECCCCccHHHHHHHhhCccCCC-CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhc
Confidence 3467899999999999999999999999999998 67777654321 11110 1
Q ss_pred Ccccch----------hh-----------HHhHcCCCCccHHHHHHHHHHHhc------CCCEEEEeCCCChHhHH----
Q 027392 55 DIPHSA----------IG-----------TARRMQVPEPSLQHKVMIEAVENH------MPEVIIVDEIGTEAEAH---- 103 (224)
Q Consensus 55 ~~~~~~----------~~-----------~~~~~~~~~~g~~qr~~la~al~~------~p~llilDEp~~~lD~~---- 103 (224)
..|+.. .. ..+.+...|||++||+.+||.|++ ++++|+|||||+.||+.
T Consensus 100 r~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~ 179 (259)
T COG4559 100 RIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHH 179 (259)
T ss_pred ccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHH
Confidence 111100 00 012233458999999999999985 34589999999999953
Q ss_pred ---HHHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 104 ---ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 104 ---~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
..+++..+|..|+.+-||++.+..+||+++ ++++|+++..|.|...+.
T Consensus 180 tl~laR~la~~g~~V~~VLHDLNLAA~YaDriv--ll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 180 TLRLARQLAREGGAVLAVLHDLNLAAQYADRIV--LLHQGRVIASGSPQDVLT 230 (259)
T ss_pred HHHHHHHHHhcCCcEEEEEccchHHHHhhheee--eeeCCeEeecCCHHHhcC
Confidence 456778889999999999999999999998 788899999999998764
No 99
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.8e-27 Score=202.33 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=105.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC------------cccCC----------CCcccch-
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN------------EIGGD----------GDIPHSA- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~------------~~~~~----------~~~~~~~- 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+..- .+++. ..+..+.
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~ 100 (271)
T PRK13638 22 LDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ-KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIA 100 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHH
Confidence 468999999999999999999999999999887 56665422110 01100 0000000
Q ss_pred -----------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 61 -----------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 61 -----------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||... +.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 180 (271)
T PRK13638 101 FSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIR 180 (271)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 001112222 36999999999999999999999999999999643 34
Q ss_pred HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 107 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 107 ~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+++++|.|||++||+.+++..+||+++ ++.+|+++..++++...
T Consensus 181 ~~~~~g~tii~vtH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 181 RIVAQGNHVIISSHDIDLIYEISDAVY--VLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHh
Confidence 455568999999999998989999997 44557788888776554
No 100
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.95 E-value=4.4e-27 Score=199.21 Aligned_cols=145 Identities=15% Similarity=0.237 Sum_probs=104.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeE--------EEEcCCCcccCCC--Ccc-----------cchhh
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV--------VIVDTSNEIGGDG--DIP-----------HSAIG 62 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i--------~~~~~~~~~~~~~--~~~-----------~~~~~ 62 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+ .|+.+...+.... ... .....
T Consensus 25 ~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~-~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 103 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD-EGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILP 103 (251)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHH
Confidence 368999999999999999999999999999887 4544 3444432221100 000 00011
Q ss_pred HHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHc-CCEEEEEEeCcch
Q 027392 63 TARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWL 124 (224)
Q Consensus 63 ~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~-g~tvi~~tH~~~~ 124 (224)
..+.+++ .|+||+||++||++++.+|++|||||||++||... +.++.++ +.|||++||+.++
T Consensus 104 ~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~ 183 (251)
T PRK09544 104 ALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHL 183 (251)
T ss_pred HHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 1122222 47999999999999999999999999999999653 3344444 8999999999999
Q ss_pred HHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 125 ENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 125 ~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+..+||+++. + ++ +++..++++...
T Consensus 184 i~~~~d~i~~-l-~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 184 VMAKTDEVLC-L-NH-HICCSGTPEVVS 208 (251)
T ss_pred HHHhCCEEEE-E-CC-ceEeeCCHHHHh
Confidence 9999999974 5 44 567777776544
No 101
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.4e-27 Score=204.77 Aligned_cols=145 Identities=14% Similarity=0.191 Sum_probs=106.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------------CCC--cccCCCCccc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------------TSN--EIGGDGDIPH 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------------~~~--~~~~~~~~~~ 58 (224)
-.|++||+++|+||||||||||+|+|+|+++|+ .|.|.+.+ |.. .+.. ..+.+
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e 105 (290)
T PRK13634 28 VSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT-SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE-ETVEK 105 (290)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh-hhHHH
Confidence 468999999999999999999999999999887 56654422 211 0000 00000
Q ss_pred ch------------------hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-----
Q 027392 59 SA------------------IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----- 104 (224)
Q Consensus 59 ~~------------------~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~----- 104 (224)
+. ....+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 106 ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~ 185 (290)
T PRK13634 106 DICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMM 185 (290)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 00 001122332 36899999999999999999999999999999653
Q ss_pred --HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 --CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 --~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++++.+ .|.|||++||+++++..+||+++ ++.+|+++..++++..+
T Consensus 186 ~~L~~l~~~~g~tviiitHd~~~~~~~~drv~--~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 186 EMFYKLHKEKGLTTVLVTHSMEDAARYADQIV--VMHKGTVFLQGTPREIF 234 (290)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHh
Confidence 344544 48999999999999999999997 45667888888877654
No 102
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.95 E-value=3.8e-27 Score=196.08 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=98.6
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE----------------------cCCCc--ccCCCCccc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV----------------------DTSNE--IGGDGDIPH 58 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~----------------------~~~~~--~~~~~~~~~ 58 (224)
+-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+. .+... +........
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~ 103 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAILGLLKPT-SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGE 103 (228)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHH
Confidence 3478999999999999999999999999999887 4555432 22210 000000000
Q ss_pred ---------------ch-h----hHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---
Q 027392 59 ---------------SA-I----GTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 104 (224)
Q Consensus 59 ---------------~~-~----~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~--- 104 (224)
.. . ...+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 104 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~ 183 (228)
T cd03257 104 QIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQ 183 (228)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHH
Confidence 00 0 01122222 36899999999999999999999999999999643
Q ss_pred ----HHHHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEE
Q 027392 105 ----CRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 144 (224)
Q Consensus 105 ----~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~ 144 (224)
+.+++++ |.|||++||+.+++..+||+++. + ++|+++.
T Consensus 184 l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~-l-~~G~i~~ 226 (228)
T cd03257 184 ILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAV-M-YAGKIVE 226 (228)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEE-E-eCCEEEe
Confidence 3445544 89999999999988889999974 4 4455543
No 103
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.95 E-value=4.5e-27 Score=199.53 Aligned_cols=147 Identities=16% Similarity=0.214 Sum_probs=106.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc--------------------------------CCCcc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD--------------------------------TSNEI 50 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~--------------------------------~~~~~ 50 (224)
+-.+++|++++|+|+||||||||+++|+|+++|+ .|.+.+.+ +...+
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l 103 (257)
T PRK10619 25 SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS-EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 103 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCccc
Confidence 3468999999999999999999999999999887 56554422 11111
Q ss_pred cCCCCcccch-------------------hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChH
Q 027392 51 GGDGDIPHSA-------------------IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 100 (224)
Q Consensus 51 ~~~~~~~~~~-------------------~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~l 100 (224)
.......++. ....+.+++ .|+||+||++||++++.+|++|||||||++|
T Consensus 104 ~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 183 (257)
T PRK10619 104 WSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSAL 183 (257)
T ss_pred CCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 0000000000 001122222 3699999999999999999999999999999
Q ss_pred hHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 101 EAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 101 D~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
|... +++++++|.|||++||+.++...+||+++ ++..|+++..++.+...
T Consensus 184 D~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 184 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI--FLHQGKIEEEGAPEQLF 240 (257)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEECCEEEEeCCHHHhh
Confidence 9653 34455668999999999999999999997 44557788777766544
No 104
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.95 E-value=2.5e-27 Score=195.43 Aligned_cols=131 Identities=15% Similarity=0.242 Sum_probs=95.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc----------------------CCCcccCCCCcccch
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD----------------------TSNEIGGDGDIPHSA 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~----------------------~~~~~~~~~~~~~~~ 60 (224)
+-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+.......++.
T Consensus 21 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l 99 (214)
T cd03292 21 NISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT-SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENV 99 (214)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHH
Confidence 3468999999999999999999999999999887 56665422 111111000000000
Q ss_pred ------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 61 ------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 61 ------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
....+.+++ .|+||+||++||++++.+|+++||||||++||... +
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 179 (214)
T cd03292 100 AFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL 179 (214)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 001122222 36899999999999999999999999999999543 4
Q ss_pred HHHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 106 RSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 106 ~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
+++++++.|+|++||+.++...+||+++.
T Consensus 180 ~~~~~~~~tiiivtH~~~~~~~~~d~i~~ 208 (214)
T cd03292 180 KKINKAGTTVVVATHAKELVDTTRHRVIA 208 (214)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 45555689999999999988889999864
No 105
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.3e-27 Score=206.64 Aligned_cols=149 Identities=19% Similarity=0.194 Sum_probs=108.6
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCc----cCCCeEE-----------------------EEcCCCcccCC--
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSD----EFQKRVV-----------------------IVDTSNEIGGD-- 53 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~----~~~~~i~-----------------------~~~~~~~~~~~-- 53 (224)
+-.|.+||+++|+|+||||||||+++|+|++++ + .|.|. ++.|+......
T Consensus 27 sl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~-~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~ 105 (330)
T PRK15093 27 SMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVT-ADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPS 105 (330)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCc-ceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCcc
Confidence 347899999999999999999999999999863 3 34443 33332211000
Q ss_pred CCcc------------------c------chhhHHhHcCC-------------CCccHHHHHHHHHHHhcCCCEEEEeCC
Q 027392 54 GDIP------------------H------SAIGTARRMQV-------------PEPSLQHKVMIEAVENHMPEVIIVDEI 96 (224)
Q Consensus 54 ~~~~------------------~------~~~~~~~~~~~-------------~~~g~~qr~~la~al~~~p~llilDEp 96 (224)
..+. . ......+.+++ .|+||+||++||+||+.+|++||+|||
T Consensus 106 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEP 185 (330)
T PRK15093 106 ERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEP 185 (330)
T ss_pred ccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 0000 0 00011223333 369999999999999999999999999
Q ss_pred CChHhHH-------HHHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHH
Q 027392 97 GTEAEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 154 (224)
Q Consensus 97 ~~~lD~~-------~~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~ 154 (224)
|++||.. .++++.+ .|.|+|++||++.++..+||+++ ++.+|+++..++.+.++..
T Consensus 186 ts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~--vm~~G~ive~g~~~~i~~~ 249 (330)
T PRK15093 186 TNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKIN--VLYCGQTVETAPSKELVTT 249 (330)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhC
Confidence 9999954 3445555 48999999999999999999997 5677889999888776654
No 106
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.95 E-value=3.8e-27 Score=187.79 Aligned_cols=131 Identities=19% Similarity=0.268 Sum_probs=95.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE--------EcCCCcccCCCCcccchhhHHhHcCCCCccHH
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--------VDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQ 75 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 75 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+ +.+...+. .....++... ....-.|+||+
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~-~~tv~~nl~~--~~~~~LS~G~~ 97 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLP-LGTLREQLIY--PWDDVLSGGEQ 97 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccc-cccHHHHhhc--cCCCCCCHHHH
Confidence 368899999999999999999999999999887 565544 33222111 0011111100 02234689999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCChHhHHHHHH----HHHcCCEEEEEEeCcchHHhhccceeeeccCCe
Q 027392 76 HKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 140 (224)
Q Consensus 76 qr~~la~al~~~p~llilDEp~~~lD~~~~~~----~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~ 140 (224)
||+++|++++.+|+++||||||++||...... +.+.+.|+|++||+.++. .+||+++. +.++|
T Consensus 98 ~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~-~~~d~i~~-l~~~~ 164 (166)
T cd03223 98 QRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW-KFHDRVLD-LDGEG 164 (166)
T ss_pred HHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH-hhCCEEEE-EcCCC
Confidence 99999999999999999999999999654432 334478999999998765 58999874 54433
No 107
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.95 E-value=4.9e-27 Score=196.21 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=105.7
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCc----cCCCeEEEE-----------------cCCCc--ccCCCCcccc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSD----EFQKRVVIV-----------------DTSNE--IGGDGDIPHS 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~----~~~~~i~~~-----------------~~~~~--~~~~~~~~~~ 59 (224)
+-.+++|++++|+||||||||||+++|+|+++| + .|.+.+. .+... +.........
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~-~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~ 84 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT-SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNH 84 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc-ccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHH
Confidence 347899999999999999999999999999987 5 4655432 22211 0000000000
Q ss_pred ------------------hhhHHhHcCC-------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH----
Q 027392 60 ------------------AIGTARRMQV-------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---- 104 (224)
Q Consensus 60 ------------------~~~~~~~~~~-------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~---- 104 (224)
.....+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l 164 (230)
T TIGR02770 85 AIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARV 164 (230)
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHH
Confidence 0000112222 36899999999999999999999999999999653
Q ss_pred ---HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 ---CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 ---~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.++++ .+.|||++||+.++...+||+++ ++.+|+++..++++...
T Consensus 165 ~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 165 LKLLRELRQLFGTGILLITHDLGVVARIADEVA--VMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHH
Confidence 344554 48899999999998989999997 44667788887776654
No 108
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=4.3e-27 Score=197.87 Aligned_cols=147 Identities=15% Similarity=0.178 Sum_probs=105.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCCCCcccc----
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGDGDIPHS---- 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~~~~~~~---- 59 (224)
+-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +...+.....+.++
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 99 (242)
T cd03295 21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT-SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALV 99 (242)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHH
Confidence 3468999999999999999999999999999887 56665422 11111100000000
Q ss_pred --------------hhhHHhHcCC------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 60 --------------AIGTARRMQV------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 60 --------------~~~~~~~~~~------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
.....+.+++ .|+||+||++||++++.+|++|||||||++||... +.
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~ 179 (242)
T cd03295 100 PKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179 (242)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 0001122222 36899999999999999999999999999999653 34
Q ss_pred HHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 107 SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 107 ~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+++++ |.|||++||+.++...+||+++ ++.+|+++..++.+...
T Consensus 180 ~~~~~~g~tvii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 180 RLQQELGKTIVFVTHDIDEAFRLADRIA--IMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHHHHcCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEecCHHHHH
Confidence 44443 8999999999998889999997 44567777777665543
No 109
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.95 E-value=4.5e-27 Score=195.72 Aligned_cols=144 Identities=19% Similarity=0.264 Sum_probs=104.5
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE--------------EcCCCcccCC--CCc------------
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--------------VDTSNEIGGD--GDI------------ 56 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~--------------~~~~~~~~~~--~~~------------ 56 (224)
.+++|++++|+|+||||||||+++|+|+++|+ .|.+.+ +.+...+... ...
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPA-KGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 47899999999999999999999999999887 455543 3322211000 000
Q ss_pred -----cc-c----hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH
Q 027392 57 -----PH-S----AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA 109 (224)
Q Consensus 57 -----~~-~----~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~ 109 (224)
+. . .....+.+++ .|+||+||++||++++.+|++||+||||++||... +.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~ 160 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA 160 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 00 0 0011122222 36999999999999999999999999999999543 34555
Q ss_pred HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 110 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 110 ~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+++.|+|++||+.++...+||+++. + + |+++..++.+...
T Consensus 161 ~~~~tvii~sH~~~~~~~~~d~i~~-l-~-G~i~~~~~~~~~~ 200 (223)
T TIGR03771 161 GAGTAILMTTHDLAQAMATCDRVVL-L-N-GRVIADGTPQQLQ 200 (223)
T ss_pred HcCCEEEEEeCCHHHHHHhCCEEEE-E-C-CEEEeecCHHHhc
Confidence 6689999999999989999999974 4 4 7778777766543
No 110
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.7e-27 Score=207.55 Aligned_cols=150 Identities=16% Similarity=0.168 Sum_probs=109.4
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCc----cCCCeEEEE-----------------------cCCCc--ccCC
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSD----EFQKRVVIV-----------------------DTSNE--IGGD 53 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~----~~~~~i~~~-----------------------~~~~~--~~~~ 53 (224)
+-.|++||+++|+|+||||||||+++|+|++++ + .|.|.+. .|+.. +...
T Consensus 27 sl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~-~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~ 105 (326)
T PRK11022 27 SYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVM-AEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPC 105 (326)
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCc-ceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCc
Confidence 347899999999999999999999999999974 3 4555442 22211 0000
Q ss_pred CCcccc-------------------hhhHHhHcCC-------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHh
Q 027392 54 GDIPHS-------------------AIGTARRMQV-------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 101 (224)
Q Consensus 54 ~~~~~~-------------------~~~~~~~~~~-------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD 101 (224)
..+..+ .....+.+++ .|+||+||++||+|++.+|++||+||||++||
T Consensus 106 ~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD 185 (326)
T PRK11022 106 YTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALD 185 (326)
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 000000 0011223333 36999999999999999999999999999999
Q ss_pred HH-------HHHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHh
Q 027392 102 AH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 155 (224)
Q Consensus 102 ~~-------~~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~ 155 (224)
.. .++++++ .|.|+|++||++.++..+||+++ ++.+|+++..++.+.++..+
T Consensus 186 ~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~--vm~~G~ive~g~~~~~~~~p 245 (326)
T PRK11022 186 VTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKII--VMYAGQVVETGKAHDIFRAP 245 (326)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHhhCC
Confidence 54 3455554 58999999999999989999997 56678899999888776543
No 111
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3e-27 Score=203.11 Aligned_cols=146 Identities=15% Similarity=0.212 Sum_probs=105.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCc-ccCCCCcccch---
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNE-IGGDGDIPHSA--- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~-~~~~~~~~~~~--- 60 (224)
-.|++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +... ......+..+.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~ 106 (279)
T PRK13650 28 FHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE-SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG 106 (279)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhh
Confidence 368999999999999999999999999999987 56665432 1110 00000000000
Q ss_pred ---------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHH
Q 027392 61 ---------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSI 108 (224)
Q Consensus 61 ---------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~ 108 (224)
....+.+++ .|+||+||++||+|++.+|++|||||||++||... +.++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l 186 (279)
T PRK13650 107 LENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGI 186 (279)
T ss_pred HHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 001122222 36999999999999999999999999999999643 4455
Q ss_pred HHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 109 AER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 109 ~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+++ |.|||++||++++.. .||+++ ++.+|+++..++++....
T Consensus 187 ~~~~g~tilivtH~~~~~~-~~dri~--~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 187 RDDYQMTVISITHDLDEVA-LSDRVL--VMKNGQVESTSTPRELFS 229 (279)
T ss_pred HHhcCCEEEEEecCHHHHH-hCCEEE--EEECCEEEEECCHHHHHc
Confidence 544 899999999998874 799997 456678888888776553
No 112
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.6e-27 Score=197.50 Aligned_cols=146 Identities=14% Similarity=0.168 Sum_probs=105.4
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc--------------------CCCcccCCCCcccc----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD--------------------TSNEIGGDGDIPHS---- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~--------------------~~~~~~~~~~~~~~---- 59 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+.....+.++
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 102 (241)
T PRK10895 24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD-AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAV 102 (241)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhh
Confidence 468999999999999999999999999999887 56555422 11111100000000
Q ss_pred ---------------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHH
Q 027392 60 ---------------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRS 107 (224)
Q Consensus 60 ---------------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~ 107 (224)
.....+.+++ .|+||+||+++|++++.+|++|||||||++||... +.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (241)
T PRK10895 103 LQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEH 182 (241)
T ss_pred hhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 0000122222 37999999999999999999999999999999543 344
Q ss_pred HHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 108 IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 108 ~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++++|.|+|++||+.++...+||+++. +.+|+++..++++...
T Consensus 183 ~~~~g~tiii~sH~~~~~~~~~d~v~~--l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 183 LRDSGLGVLITDHNVRETLAVCERAYI--VSQGHLIAHGTPTEIL 225 (241)
T ss_pred HHhcCCEEEEEEcCHHHHHHhcCEEEE--EeCCeEEeeCCHHHHh
Confidence 556689999999999888899999974 4557777777766543
No 113
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=2.7e-27 Score=198.80 Aligned_cols=152 Identities=16% Similarity=0.184 Sum_probs=117.3
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCC--CcccchhhHHhHcCC----------
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG--DIPHSAIGTARRMQV---------- 69 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------- 69 (224)
|+=.|++||+++|+|.+|||||||.|+|.|++.|+ +|.|.+-+.+ +.... ..........+.+++
T Consensus 32 Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~--i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPh 108 (268)
T COG4608 32 VSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKD--ITKLSKEERRERVLELLEKVGLPEEFLYRYPH 108 (268)
T ss_pred eeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcc--hhhcchhHHHHHHHHHHHHhCCCHHHhhcCCc
Confidence 34478999999999999999999999999999998 7888885432 11000 000111122223332
Q ss_pred -CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhH-------HHHHHHH-HcCCEEEEEEeCcchHHhhccceeeeccCCe
Q 027392 70 -PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGV 140 (224)
Q Consensus 70 -~~~g~~qr~~la~al~~~p~llilDEp~~~lD~-------~~~~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~ 140 (224)
.||||+||+.|||||+.+|+++++|||+++||. +.+.+++ +.|.+.+++|||+..+..+||++. ++..|
T Consensus 109 elSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~--VMy~G 186 (268)
T COG4608 109 ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIA--VMYLG 186 (268)
T ss_pred ccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEE--EEecC
Confidence 269999999999999999999999999999995 3345565 449999999999999999999996 56668
Q ss_pred eEEEcCCHHHHHHHhhHH
Q 027392 141 DTVTLGDEEARARRCQKS 158 (224)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~ 158 (224)
++|..++.+.++..+...
T Consensus 187 ~iVE~g~~~~~~~~p~Hp 204 (268)
T COG4608 187 KIVEIGPTEEVFSNPLHP 204 (268)
T ss_pred ceeEecCHHHHhhCCCCH
Confidence 899999999888765433
No 114
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.3e-27 Score=203.50 Aligned_cols=147 Identities=16% Similarity=0.212 Sum_probs=106.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC--------------cccCCCC----------cccc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN--------------EIGGDGD----------IPHS 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~--------------~~~~~~~----------~~~~ 59 (224)
-.|++|++++|+||||||||||+|+|+|+++|+ .|.|.+.+..- .+++... +..+
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~ 106 (286)
T PRK13646 28 TEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT-TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVERE 106 (286)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHH
Confidence 468999999999999999999999999999987 56665422100 0111000 0000
Q ss_pred --------------h----hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH------
Q 027392 60 --------------A----IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------ 104 (224)
Q Consensus 60 --------------~----~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------ 104 (224)
. ....+.+++ .|+||+||++||++++.+|++|||||||++||+..
T Consensus 107 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~ 186 (286)
T PRK13646 107 IIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMR 186 (286)
T ss_pred HHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 0 001112222 36999999999999999999999999999999643
Q ss_pred -HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 -CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 -~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
++++++ .|.|||++||+++++..+||+++ ++.+|+++..+++...+.
T Consensus 187 ~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~--~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 187 LLKSLQTDENKTIILVSHDMNEVARYADEVI--VMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHHhCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEECCHHHHHh
Confidence 345554 48999999999998888999997 445678888888776553
No 115
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.7e-27 Score=196.00 Aligned_cols=146 Identities=16% Similarity=0.195 Sum_probs=105.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-----------------cCCCcccCCCCc---------c
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-----------------DTSNEIGGDGDI---------P 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-----------------~~~~~~~~~~~~---------~ 57 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+. .+...+.....+ +
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 98 (232)
T PRK10771 20 LTVERGERVAILGPSGAGKSTLLNLIAGFLTPA-SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNP 98 (232)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccc
Confidence 468899999999999999999999999999887 5655442 222111100000 0
Q ss_pred c---c------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-
Q 027392 58 H---S------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE- 110 (224)
Q Consensus 58 ~---~------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~- 110 (224)
. . .....+.+++ .|+||+||++||++++.+|+++||||||++||... +.++.+
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~ 178 (232)
T PRK10771 99 GLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQE 178 (232)
T ss_pred ccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 0 0 0011122222 47999999999999999999999999999999653 344444
Q ss_pred cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 111 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 111 ~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
.|.|+|++||+.++...+||+++ ++.+++++..++.+...
T Consensus 179 ~~~tiii~sH~~~~~~~~~d~i~--~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 179 RQLTLLMVSHSLEDAARIAPRSL--VVADGRIAWDGPTDELL 218 (232)
T ss_pred cCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEeCCHHHHH
Confidence 48899999999998889999997 44557777777776554
No 116
>PRK10908 cell division protein FtsE; Provisional
Probab=99.95 E-value=3.8e-27 Score=195.70 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=97.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc----------------------CCCcccCCCCcccc--
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD----------------------TSNEIGGDGDIPHS-- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~----------------------~~~~~~~~~~~~~~-- 59 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +...+.......++
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 101 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS-AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVA 101 (222)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHH
Confidence 368899999999999999999999999999887 56665432 11111000000000
Q ss_pred ----------------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 60 ----------------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 60 ----------------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
.....+.+++ .|+||+||++||++++.+|++|||||||++||... +.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 181 (222)
T PRK10908 102 IPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFE 181 (222)
T ss_pred hHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence 0011122222 36899999999999999999999999999999643 34
Q ss_pred HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeE
Q 027392 107 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 142 (224)
Q Consensus 107 ~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~ 142 (224)
++++++.|+|++||+.++...+||+++. + .+|++
T Consensus 182 ~~~~~~~tiii~sH~~~~~~~~~d~i~~-l-~~G~i 215 (222)
T PRK10908 182 EFNRVGVTVLMATHDIGLISRRSYRMLT-L-SDGHL 215 (222)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEEE-E-ECCEE
Confidence 4555689999999999999999999974 4 33443
No 117
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=6.3e-27 Score=198.91 Aligned_cols=146 Identities=20% Similarity=0.251 Sum_probs=105.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCCCCcccc-----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGDGDIPHS----- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~~~~~~~----- 59 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +...+.....+.++
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 101 (258)
T PRK13548 23 LTLRPGEVVAILGPNGAGKSTLLRALSGELSPD-SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGR 101 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhh
Confidence 368999999999999999999999999999887 56655422 21111000000000
Q ss_pred -------------hhhHHhHcCC----------CCccHHHHHHHHHHHh------cCCCEEEEeCCCChHhHHH------
Q 027392 60 -------------AIGTARRMQV----------PEPSLQHKVMIEAVEN------HMPEVIIVDEIGTEAEAHA------ 104 (224)
Q Consensus 60 -------------~~~~~~~~~~----------~~~g~~qr~~la~al~------~~p~llilDEp~~~lD~~~------ 104 (224)
.....+.+++ .|+||+||++||++++ .+|++|||||||++||...
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~ 181 (258)
T PRK13548 102 APHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR 181 (258)
T ss_pred cccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 0001122222 3699999999999999 5999999999999999643
Q ss_pred -HHHHH-HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 -CRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 -~~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.++. ++|.|||++||+.+++..+||+++ ++.+|+++..++.+...
T Consensus 182 ~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 182 LARQLAHERGLAVIVVLHDLNLAARYADRIV--LLHQGRLVADGTPAEVL 229 (258)
T ss_pred HHHHHHHhcCCEEEEEECCHHHHHHhcCEEE--EEECCEEEeeCCHHHHh
Confidence 44555 568999999999998989999997 44556777777766544
No 118
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=6e-27 Score=201.01 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=106.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC----------cccCC----------CCcccch---
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----------EIGGD----------GDIPHSA--- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~----------~~~~~----------~~~~~~~--- 60 (224)
-.+++||+++|+|+||||||||+++|+|+++|+ .|.+.+.+... .+++. ..+.++.
T Consensus 25 l~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~ 103 (277)
T PRK13652 25 FIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT-SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG 103 (277)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhH
Confidence 368999999999999999999999999999987 57665422100 01100 0000000
Q ss_pred ---------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHH
Q 027392 61 ---------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSI 108 (224)
Q Consensus 61 ---------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~ 108 (224)
....+.+++ .|+||+||++||+|++.+|++|||||||++||... ++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l 183 (277)
T PRK13652 104 PINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDL 183 (277)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 000112222 36999999999999999999999999999999543 3445
Q ss_pred HHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 109 AER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 109 ~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+++ |.|||++||+.+++..+||+++ ++++|+++..++++...
T Consensus 184 ~~~~g~tvli~tH~~~~~~~~~drv~--~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 184 PETYGMTVIFSTHQLDLVPEMADYIY--VMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHhcCCEEEEEecCHHHHHHhCCEEE--EEECCeEEEECCHHHHh
Confidence 544 8999999999999989999997 44567788888877654
No 119
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.9e-27 Score=201.19 Aligned_cols=145 Identities=14% Similarity=0.166 Sum_probs=105.1
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------------CCC--cccCCCCccc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------------TSN--EIGGDGDIPH 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------------~~~--~~~~~~~~~~ 58 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +.. .+.. ..+..
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e 105 (280)
T PRK13649 28 LTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT-QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLK 105 (280)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHH
Confidence 468999999999999999999999999999887 56655422 111 0000 00000
Q ss_pred ch------------------hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-----
Q 027392 59 SA------------------IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----- 104 (224)
Q Consensus 59 ~~------------------~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~----- 104 (224)
+. ....+.+++ .|+||+||++||+|++.+|++|||||||++||...
T Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 185 (280)
T PRK13649 106 DVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELM 185 (280)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 00 000112222 36899999999999999999999999999999653
Q ss_pred --HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 --CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 --~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.++++.+.|||++||+.+++..+||+++ ++.+|+++..++++...
T Consensus 186 ~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 186 TLFKKLHQSGMTIVLVTHLMDDVANYADFVY--VLEKGKLVLSGKPKDIF 233 (280)
T ss_pred HHHHHHHHCCCEEEEEeccHHHHHHhCCEEE--EEECCEEEEeCCHHHHh
Confidence 34455568999999999998989999997 44557777777776544
No 120
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.95 E-value=4.6e-27 Score=194.93 Aligned_cols=129 Identities=13% Similarity=0.166 Sum_probs=92.1
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------------CCCcccCCCCcccch
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------------TSNEIGGDGDIPHSA 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------------~~~~~~~~~~~~~~~ 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+.......++.
T Consensus 26 l~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 104 (221)
T TIGR02211 26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT-SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENV 104 (221)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHH
Confidence 368999999999999999999999999999887 56655422 111111000000000
Q ss_pred ------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 61 ------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 61 ------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||... +
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l 184 (221)
T TIGR02211 105 AMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLM 184 (221)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 001122222 37999999999999999999999999999999543 3
Q ss_pred HHHHH-cCCEEEEEEeCcchHHhhccceee
Q 027392 106 RSIAE-RGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 106 ~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
.++++ .+.|+|++||+.++... +|+++.
T Consensus 185 ~~~~~~~~~tii~~tH~~~~~~~-~d~v~~ 213 (221)
T TIGR02211 185 LELNRELNTSFLVVTHDLELAKK-LDRVLE 213 (221)
T ss_pred HHHHHhcCCEEEEEeCCHHHHhh-cCEEEE
Confidence 44444 48999999999987765 788863
No 121
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=8.3e-27 Score=189.92 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=98.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCC--ccCCCeEEEEcCC------CcccCCCC----ccc----chhhHHhHc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLS--DEFQKRVVIVDTS------NEIGGDGD----IPH----SAIGTARRM 67 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~--~~~~~~i~~~~~~------~~~~~~~~----~~~----~~~~~~~~~ 67 (224)
-.+++|++++|+||||||||||+++|+|+.. ++ .|.+.+.+.. ..+.+... ++. +........
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~-~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI-TGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL 106 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc-ceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHH
Confidence 3689999999999999999999999999863 45 5666543211 01111100 110 001001111
Q ss_pred CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcc-hHHhhccceeeeccCC
Q 027392 68 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEW-LENIIKNPILSDLIGG 139 (224)
Q Consensus 68 ~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~-~~~~~~d~v~~~l~~~ 139 (224)
.-.|+||+||+++|++++.+|++||+|||+++||... ++++++.+.|+|++||+.+ ....+||+++. +.++
T Consensus 107 ~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~-l~~~ 185 (192)
T cd03232 107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLL-LKRG 185 (192)
T ss_pred hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEE-EcCC
Confidence 2468999999999999999999999999999999643 3445556899999999987 46778999974 4432
Q ss_pred eeEEEc
Q 027392 140 VDTVTL 145 (224)
Q Consensus 140 ~~~v~~ 145 (224)
++++..
T Consensus 186 g~i~~~ 191 (192)
T cd03232 186 GKTVYF 191 (192)
T ss_pred CeEEeC
Confidence 666543
No 122
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.9e-27 Score=198.57 Aligned_cols=146 Identities=15% Similarity=0.209 Sum_probs=104.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-------------------cCCCcccCCCCcc-------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-------------------DTSNEIGGDGDIP------- 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-------------------~~~~~~~~~~~~~------- 57 (224)
-.+++|++++|+|+||||||||+++|+|+++|+ .|.+.+. .+...+.......
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~ 101 (255)
T PRK11231 23 LSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ-SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGR 101 (255)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC-CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhcc
Confidence 368899999999999999999999999999887 4655432 2221111000000
Q ss_pred -----------cc----hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 58 -----------HS----AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 58 -----------~~----~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
.. .....+.+++ .|+||+||++||+|++.+|++|||||||++||... +
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l 181 (255)
T PRK11231 102 SPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLM 181 (255)
T ss_pred chhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 00 0001122222 37999999999999999999999999999999653 3
Q ss_pred HHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 106 RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 106 ~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
.++++++.|+|++||+.+++..+||+++ ++.+|+++..++.+...
T Consensus 182 ~~l~~~~~tiii~tH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 182 RELNTQGKTVVTVLHDLNQASRYCDHLV--VLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHHHHCCCEEEEEECCHHHHHHhcCEEE--EEECCeEEEEcCHHHhc
Confidence 4445568999999999998999999997 44556777777766543
No 123
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.95 E-value=4.4e-27 Score=200.81 Aligned_cols=148 Identities=19% Similarity=0.276 Sum_probs=106.4
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCc--ccCCC-------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNE--IGGDG------- 54 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~--~~~~~------- 54 (224)
+-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +... +....
T Consensus 33 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~ 111 (267)
T PRK15112 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT-SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILD 111 (267)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-CCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHH
Confidence 3468999999999999999999999999999887 56665422 1110 00000
Q ss_pred -------Cccc-----chhhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------
Q 027392 55 -------DIPH-----SAIGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------- 104 (224)
Q Consensus 55 -------~~~~-----~~~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------- 104 (224)
.... ......+.+++ .|+||+||++||++++.+|++|||||||++||+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 191 (267)
T PRK15112 112 FPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINL 191 (267)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 0000 00001223333 36899999999999999999999999999999653
Q ss_pred HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 ~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+.++.+ .|.|||++||+.++...+||+++ ++.+|+++..++......
T Consensus 192 l~~~~~~~g~tviivsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 239 (267)
T PRK15112 192 MLELQEKQGISYIYVTQHLGMMKHISDQVL--VMHQGEVVERGSTADVLA 239 (267)
T ss_pred HHHHHHHcCcEEEEEeCCHHHHHHhcCEEE--EEECCEEEecCCHHHHhc
Confidence 344444 48999999999999999999997 445677777777766554
No 124
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.95 E-value=8.5e-27 Score=197.92 Aligned_cols=146 Identities=17% Similarity=0.188 Sum_probs=105.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC-----C--------------cccCC---CC---ccc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-----N--------------EIGGD---GD---IPH 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~-----~--------------~~~~~---~~---~~~ 58 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+.. - .+++. .. .+.
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 105 (258)
T PRK11701 27 FDLYPGEVLGIVGESGSGKTTLLNALSARLAPD-AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQ 105 (258)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCcc
Confidence 368999999999999999999999999999887 5666543321 0 01100 00 000
Q ss_pred -----ch-------------------hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH
Q 027392 59 -----SA-------------------IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 103 (224)
Q Consensus 59 -----~~-------------------~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~ 103 (224)
+. ....+.+++ .|+||+||++||++++.+|++|||||||++||..
T Consensus 106 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~ 185 (258)
T PRK11701 106 VSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS 185 (258)
T ss_pred ccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 00 000112222 3689999999999999999999999999999965
Q ss_pred H-------HHHHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 104 A-------CRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 104 ~-------~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
. +++++++ |.|||++||+.+++..+||+++ ++.+|+++..++++...
T Consensus 186 ~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~--~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 186 VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLL--VMKQGRVVESGLTDQVL 240 (258)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE--EEECCEEEEeCCHHHHh
Confidence 3 3344443 8999999999999999999997 44567888888776654
No 125
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=9.4e-27 Score=194.73 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=105.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------CCCcccCCCCcccch------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------TSNEIGGDGDIPHSA------ 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------~~~~~~~~~~~~~~~------ 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +.........+..+.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~ 99 (232)
T cd03300 21 LDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT-SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRL 99 (232)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHh
Confidence 368999999999999999999999999999987 56655422 111111000000000
Q ss_pred ------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHc
Q 027392 61 ------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAER 111 (224)
Q Consensus 61 ------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~ 111 (224)
....+.+++ .|+||+||++||++++.+|+++||||||++||... +++++++
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~ 179 (232)
T cd03300 100 KKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE 179 (232)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 001122233 36999999999999999999999999999999543 3445543
Q ss_pred -CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 112 -GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 112 -g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
|.|||++||+.++...+||+++. + .+|+++..++.....
T Consensus 180 ~~~tiii~sh~~~~~~~~~d~i~~-l-~~G~~~~~~~~~~~~ 219 (232)
T cd03300 180 LGITFVFVTHDQEEALTMSDRIAV-M-NKGKIQQIGTPEEIY 219 (232)
T ss_pred cCCEEEEEeCCHHHHHHhcCEEEE-E-ECCEEEecCCHHHHH
Confidence 89999999999988899999974 4 556777777766544
No 126
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.95 E-value=7.2e-27 Score=205.15 Aligned_cols=151 Identities=15% Similarity=0.165 Sum_probs=109.7
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc--CCCeEEE-----------------------EcCCCc--ccCCCC
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE--FQKRVVI-----------------------VDTSNE--IGGDGD 55 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~--~~~~i~~-----------------------~~~~~~--~~~~~~ 55 (224)
+-.|++||+++|+|+||||||||+++|+|+++|+ ..|.|.+ +.|+.. +.....
T Consensus 36 sl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~ 115 (330)
T PRK09473 36 NFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMR 115 (330)
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCC
Confidence 3468999999999999999999999999999873 2355544 222210 000000
Q ss_pred cccch-------------------hhHHhHcCC-------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH
Q 027392 56 IPHSA-------------------IGTARRMQV-------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 103 (224)
Q Consensus 56 ~~~~~-------------------~~~~~~~~~-------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~ 103 (224)
+..+. ....+.+++ .|+||+||++||+|++.+|++||+||||++||..
T Consensus 116 v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~ 195 (330)
T PRK09473 116 VGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVT 195 (330)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence 00000 001122222 3799999999999999999999999999999954
Q ss_pred -------HHHHHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHh
Q 027392 104 -------ACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 155 (224)
Q Consensus 104 -------~~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~ 155 (224)
.+.+++++ |.|+|++||++.++..+||+++ ++.+|+++..++.+..+..+
T Consensus 196 ~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~--vm~~G~ive~g~~~~i~~~p 253 (330)
T PRK09473 196 VQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVL--VMYAGRTMEYGNARDVFYQP 253 (330)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhCC
Confidence 34455544 8999999999999989999997 55778899999988876544
No 127
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.95 E-value=3.3e-27 Score=196.60 Aligned_cols=140 Identities=15% Similarity=0.191 Sum_probs=100.4
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcC-----CccCCCeEEEE---------------------cCCCcccCCCCcc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVL-----SDEFQKRVVIV---------------------DTSNEIGGDGDIP 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l-----~~~~~~~i~~~---------------------~~~~~~~~~~~~~ 57 (224)
-.+++|++++|+||||||||||+++|+|++ +|+ .|.|.+. .+...+. ...+.
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~ 98 (227)
T cd03260 21 LDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD-EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIY 98 (227)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC-CeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHH
Confidence 468899999999999999999999999999 776 4655432 2221111 00000
Q ss_pred -------------c------chhhHH----------hHc--CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH--
Q 027392 58 -------------H------SAIGTA----------RRM--QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-- 104 (224)
Q Consensus 58 -------------~------~~~~~~----------~~~--~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-- 104 (224)
. ...... ... .-.|+||+||++||++++.+|++|||||||++||...
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 178 (227)
T cd03260 99 DNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTA 178 (227)
T ss_pred HHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 0 000001 111 3357999999999999999999999999999999643
Q ss_pred -----HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCH
Q 027392 105 -----CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 148 (224)
Q Consensus 105 -----~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~ 148 (224)
+++++++ .|||++||+.+++..+||+++ ++.+|+++..+++
T Consensus 179 ~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~ 224 (227)
T cd03260 179 KIEELIAELKKE-YTIVIVTHNMQQAARVADRTA--FLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEE--EEeCCEEEEecCc
Confidence 3445555 899999999998889999997 4455677666544
No 128
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.95 E-value=7.3e-27 Score=198.10 Aligned_cols=147 Identities=18% Similarity=0.247 Sum_probs=106.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCCCCcccc----
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGDGDIPHS---- 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~~~~~~~---- 59 (224)
+-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+ +.+...........++
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 99 (256)
T TIGR03873 21 DVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD-AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALG 99 (256)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-CCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhc
Confidence 3468999999999999999999999999999887 465544 2222111100000000
Q ss_pred ------------------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------
Q 027392 60 ------------------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------- 104 (224)
Q Consensus 60 ------------------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------- 104 (224)
.....+.+++ .|+||+||++||++++.+|+++||||||++||...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 179 (256)
T TIGR03873 100 RIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLAL 179 (256)
T ss_pred chhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH
Confidence 0001122222 36899999999999999999999999999999653
Q ss_pred HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 ~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++++++++.|||++||++++...+||+++ ++.+|+++..++.+...
T Consensus 180 l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 180 VRELAATGVTVVAALHDLNLAASYCDHVV--VLDGGRVVAAGPPREVL 225 (256)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEeCCCEEEecCHHHhh
Confidence 34555568999999999999989999997 44557788877776544
No 129
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.95 E-value=4e-27 Score=183.63 Aligned_cols=114 Identities=19% Similarity=0.303 Sum_probs=93.1
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHH
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 84 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al 84 (224)
.+++||+++|+||||||||||+++|+|+++|+ .|.+.+.+ ...+++ .++ .|+||+||++||+++
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~~-~~~i~~---~~~-----------lS~G~~~rv~laral 85 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGS-TVKIGY---FEQ-----------LSGGEKMRLALAKLL 85 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECC-eEEEEE---Ecc-----------CCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999987 67776632 112211 111 689999999999999
Q ss_pred hcCCCEEEEeCCCChHhHHHHH----HHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 85 NHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 85 ~~~p~llilDEp~~~lD~~~~~----~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
+.+|+++|+|||+++||..... .+++.+.|++++||+.++...+||+++.
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~~ 139 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKIIE 139 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence 9999999999999999965432 2334468999999999989889999963
No 130
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=6.6e-27 Score=200.47 Aligned_cols=145 Identities=16% Similarity=0.227 Sum_probs=104.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC--------------------CCcc-cCCCCcccch--
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--------------------SNEI-GGDGDIPHSA-- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~--------------------~~~~-~~~~~~~~~~-- 60 (224)
-.|++|++++|+||||||||||+++|+|+++|+ .|.|.+.+. .... .....+..+.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~ 101 (274)
T PRK13644 23 LVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ-KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAF 101 (274)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHh
Confidence 368999999999999999999999999999887 566654321 1100 0000000000
Q ss_pred ----------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHH
Q 027392 61 ----------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRS 107 (224)
Q Consensus 61 ----------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~ 107 (224)
....+.+++ .|+||+||++||+|++.+|++|||||||++||... +++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 181 (274)
T PRK13644 102 GPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKK 181 (274)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 000112222 36999999999999999999999999999999543 445
Q ss_pred HHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 108 IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 108 ~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++++|.|||++||+++++. .||+++ ++.+|+++..++.+...
T Consensus 182 l~~~g~til~~tH~~~~~~-~~d~v~--~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 182 LHEKGKTIVYITHNLEELH-DADRII--VMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHhCCCEEEEEecCHHHHh-hCCEEE--EEECCEEEEECCHHHHh
Confidence 5566899999999998875 699997 44567788888877654
No 131
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=6.8e-27 Score=201.26 Aligned_cols=146 Identities=14% Similarity=0.223 Sum_probs=106.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC------------cccCCC----------Ccccch-
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN------------EIGGDG----------DIPHSA- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~------------~~~~~~----------~~~~~~- 60 (224)
-.|++||+++|+||||||||||+++|+|+++|+ .|.+.+.+... .+++.. .+..+.
T Consensus 27 ~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~-~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~ 105 (283)
T PRK13636 27 INIKKGEVTAILGGNGAGKSTLFQNLNGILKPS-SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVS 105 (283)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHH
Confidence 368999999999999999999999999999887 56655432110 011000 000000
Q ss_pred -----------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 61 -----------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 61 -----------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
....+.+++ .|+||+||++||++|+.+|++|||||||++||... ++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~ 185 (283)
T PRK13636 106 FGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLV 185 (283)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 000122222 36999999999999999999999999999999653 34
Q ss_pred HHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 107 SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 107 ~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++.++ |.|||++||+++++..+||+++ ++.+|+++..++.+...
T Consensus 186 ~l~~~~g~tillvsH~~~~~~~~~dri~--~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 186 EMQKELGLTIIIATHDIDIVPLYCDNVF--VMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHhCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHh
Confidence 45544 8999999999998888999997 45567788888877654
No 132
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.95 E-value=9.4e-27 Score=195.64 Aligned_cols=145 Identities=14% Similarity=0.142 Sum_probs=104.1
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC--------------------CCcccCCCCcccc----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--------------------SNEIGGDGDIPHS---- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~--------------------~~~~~~~~~~~~~---- 59 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+. ...+.....+.++
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~ 101 (242)
T TIGR03411 23 LYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD-EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELA 101 (242)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHh
Confidence 368999999999999999999999999999887 566554321 1111000000000
Q ss_pred ----------------------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---
Q 027392 60 ----------------------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 104 (224)
Q Consensus 60 ----------------------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~--- 104 (224)
.....+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~ 181 (242)
T TIGR03411 102 LPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEK 181 (242)
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHH
Confidence 0001122222 36899999999999999999999999999999654
Q ss_pred ----HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 ----CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 ----~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++++.+ +.|+|++||+.+++..+||+++ ++.+|+++..++.+...
T Consensus 182 l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~--~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 182 TAELLKSLAG-KHSVVVVEHDMEFVRSIADKVT--VLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEE--EEECCeEEeeCCHHHHh
Confidence 333333 6899999999999999999997 44557777777766543
No 133
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.95 E-value=9.9e-27 Score=196.81 Aligned_cols=147 Identities=14% Similarity=0.212 Sum_probs=105.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc--------------------------------CCCcc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD--------------------------------TSNEI 50 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~--------------------------------~~~~~ 50 (224)
+-.+++|++++|+||||||||||+|+|+|+++|+ .|.+.+.+ +...+
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (252)
T TIGR03005 20 NFSVAAGEKVALIGPSGSGKSTILRILMTLEPID-EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNL 98 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCccc
Confidence 3468999999999999999999999999999887 56655421 11111
Q ss_pred cCCCCcccch-------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHh
Q 027392 51 GGDGDIPHSA-------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 101 (224)
Q Consensus 51 ~~~~~~~~~~-------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD 101 (224)
.....+.++. ....+.+++ .|+||+||++||++++.+|++|||||||++||
T Consensus 99 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 178 (252)
T TIGR03005 99 FPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALD 178 (252)
T ss_pred CCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 0000000000 001122222 36899999999999999999999999999999
Q ss_pred HHH-------HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 102 AHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 102 ~~~-------~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
... ++++.+ .|.|+|++||+.++...+||+++ ++.+|+++..++.+...
T Consensus 179 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 179 PELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVC--FFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE--EEECCEEEEeCCHHHHh
Confidence 653 344444 38999999999998888999997 44557788777776554
No 134
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.95 E-value=5.5e-27 Score=186.97 Aligned_cols=140 Identities=18% Similarity=0.209 Sum_probs=104.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC------CcccC----------------CCCcccch
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS------NEIGG----------------DGDIPHSA 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~------~~~~~----------------~~~~~~~~ 60 (224)
+-.|++||++.|+||+|||||||+|.|.+...|+ .|.+.+.+.+ .++.+ ...+.++.
T Consensus 22 s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt-~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNV 100 (223)
T COG2884 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT-RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENV 100 (223)
T ss_pred eEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC-CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhh
Confidence 4478999999999999999999999999999998 6777664332 11111 00000110
Q ss_pred ------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------HH
Q 027392 61 ------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------AC 105 (224)
Q Consensus 61 ------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~~ 105 (224)
....+.+++ .|||+|||++||||++++|++||.||||.+||+. .+
T Consensus 101 A~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lf 180 (223)
T COG2884 101 ALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLF 180 (223)
T ss_pred hhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHH
Confidence 011233333 3699999999999999999999999999999964 34
Q ss_pred HHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEc
Q 027392 106 RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 145 (224)
Q Consensus 106 ~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~ 145 (224)
.++...|.||+++|||....+.+..|++. +.+ |+++..
T Consensus 181 eeinr~GtTVl~ATHd~~lv~~~~~rvl~-l~~-Grl~~d 218 (223)
T COG2884 181 EEINRLGTTVLMATHDLELVNRMRHRVLA-LED-GRLVRD 218 (223)
T ss_pred HHHhhcCcEEEEEeccHHHHHhccCcEEE-EeC-CEEEec
Confidence 56677899999999999999999888874 544 565543
No 135
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.95 E-value=5.8e-27 Score=188.54 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=97.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC---------cccCCCCcccch-hhHHhH-cCCCCc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN---------EIGGDGDIPHSA-IGTARR-MQVPEP 72 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~---------~~~~~~~~~~~~-~~~~~~-~~~~~~ 72 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+... .+++....+.-. ....+. ..-.|+
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ-QGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 368999999999999999999999999999887 67776532210 011100000000 011111 344689
Q ss_pred cHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH-------HHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEE
Q 027392 73 SLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 144 (224)
Q Consensus 73 g~~qr~~la~al~~~p~llilDEp~~~lD~~~~-------~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~ 144 (224)
||+||++||++++.+|++|||||||++||.... .++. ++.|+|++||+.++.. .||+++. + .+|+++.
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~~d~~~~-l-~~g~i~~ 176 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIE-HMDKILF-L-ENGKIIM 176 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hCCEEEE-E-ECCEEEe
Confidence 999999999999999999999999999996542 2332 4789999999998876 6999874 4 4455543
No 136
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=7e-27 Score=204.44 Aligned_cols=147 Identities=12% Similarity=0.141 Sum_probs=107.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC--C------------------------cccCCC---
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS--N------------------------EIGGDG--- 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~--~------------------------~~~~~~--- 54 (224)
-.|++|++++|+|+||||||||+++|+|+++|+ .|.|.+.+.. . .+++..
T Consensus 47 l~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~-~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~ 125 (320)
T PRK13631 47 YTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK-YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFP 125 (320)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECc
Confidence 468999999999999999999999999999987 5766553110 0 000000
Q ss_pred -------Ccccch------------------hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCC
Q 027392 55 -------DIPHSA------------------IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGT 98 (224)
Q Consensus 55 -------~~~~~~------------------~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~ 98 (224)
.+..+. ....+.+++ .|+||+||++||++++.+|++|||||||+
T Consensus 126 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPts 205 (320)
T PRK13631 126 EYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTA 205 (320)
T ss_pred hhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 000000 000122222 36999999999999999999999999999
Q ss_pred hHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 99 EAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 99 ~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+||... +.+++++|.|||++||+++++..+||+++ ++++|+++..++++..+.
T Consensus 206 gLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~--vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 206 GLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI--VMDKGKILKTGTPYEIFT 265 (320)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhc
Confidence 999653 34455668999999999998888999997 556678888888876553
No 137
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-26 Score=195.44 Aligned_cols=145 Identities=16% Similarity=0.222 Sum_probs=104.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------------CCCcccCCCCcc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------------TSNEIGGDGDIP 57 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------------~~~~~~~~~~~~ 57 (224)
+-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+.+ +...+.....+.
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 100 (242)
T PRK11124 22 TLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQ 100 (242)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHH
Confidence 3468999999999999999999999999999887 56665422 111110000000
Q ss_pred cch-------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH----
Q 027392 58 HSA-------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---- 104 (224)
Q Consensus 58 ~~~-------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~---- 104 (224)
++. ....+.+++ .|+||+||++||++++.+|+++||||||++||...
T Consensus 101 e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l 180 (242)
T PRK11124 101 QNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180 (242)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHH
Confidence 000 000122222 36899999999999999999999999999999653
Q ss_pred ---HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHH
Q 027392 105 ---CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 150 (224)
Q Consensus 105 ---~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~ 150 (224)
++++++++.|+|++||+..+...+||+++. + .+|+++..++.+.
T Consensus 181 ~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~-l-~~g~i~~~~~~~~ 227 (242)
T PRK11124 181 VSIIRELAETGITQVIVTHEVEVARKTASRVVY-M-ENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEE-E-ECCEEEEeCCHHH
Confidence 344455689999999999988889999974 4 4567777766554
No 138
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=9.1e-27 Score=198.60 Aligned_cols=146 Identities=11% Similarity=0.189 Sum_probs=105.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCCCCcc-------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGDGDIP------- 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~~~~~------- 57 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+ +.+.........+.
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 110 (265)
T PRK10575 32 LTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS-EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGR 110 (265)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCc
Confidence 368899999999999999999999999999887 465543 22221111000000
Q ss_pred -----------cc----hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 58 -----------HS----AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 58 -----------~~----~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
.. .....+.+++ .|+||+||++||++++.+|++|||||||++||... +
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l 190 (265)
T PRK10575 111 YPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALV 190 (265)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 00 0001122222 37999999999999999999999999999999654 3
Q ss_pred HHHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 106 RSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 106 ~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
.+++++ +.|||++||+.++...+||+++ ++.+|+++..++.+...
T Consensus 191 ~~l~~~~~~tiii~sH~~~~i~~~~d~i~--~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 191 HRLSQERGLTVIAVLHDINMAARYCDYLV--ALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCeEEEecCHHHhc
Confidence 445444 8999999999998989999997 44557777777766543
No 139
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8.2e-27 Score=195.16 Aligned_cols=138 Identities=14% Similarity=0.161 Sum_probs=96.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------------CCCcccCCCCcccch
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------------TSNEIGGDGDIPHSA 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------------~~~~~~~~~~~~~~~ 60 (224)
-.|++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +...+.......++.
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 108 (233)
T PRK11629 30 FSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT-SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENV 108 (233)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHH
Confidence 478999999999999999999999999999887 56555422 211111000000000
Q ss_pred ------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 61 ------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 61 ------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||... +
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 188 (233)
T PRK11629 109 AMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLL 188 (233)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 001122332 36999999999999999999999999999999653 3
Q ss_pred HHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEc
Q 027392 106 RSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 145 (224)
Q Consensus 106 ~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~ 145 (224)
.++++ .|.|||++||+.+++..+ ++++ ++.+|+++..
T Consensus 189 ~~~~~~~g~tvii~sH~~~~~~~~-~~~~--~l~~G~i~~~ 226 (233)
T PRK11629 189 GELNRLQGTAFLVVTHDLQLAKRM-SRQL--EMRDGRLTAE 226 (233)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHhh-CEEE--EEECCEEEEE
Confidence 44444 589999999999888776 4665 3445665543
No 140
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.94 E-value=1.3e-26 Score=197.77 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=107.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc------CCCcccCCCCccc--------------chh--
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD------TSNEIGGDGDIPH--------------SAI-- 61 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~------~~~~~~~~~~~~~--------------~~~-- 61 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+.....+.. ...
T Consensus 45 ~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~-~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 123 (264)
T PRK13546 45 LKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT-VGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAM 123 (264)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHH
Confidence 368999999999999999999999999999987 56665422 1111110000000 000
Q ss_pred --hHHhHc----------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCc
Q 027392 62 --GTARRM----------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGE 122 (224)
Q Consensus 62 --~~~~~~----------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~ 122 (224)
...+.+ .-.|+||+||++||++++.+|++|||||||++||+.. +.++++.|.|+|++||+.
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~ 203 (264)
T PRK13546 124 TPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL 203 (264)
T ss_pred HHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 001111 2247999999999999999999999999999999653 344556689999999999
Q ss_pred chHHhhccceeeeccCCeeEEEcCCHHHHHHH
Q 027392 123 WLENIIKNPILSDLIGGVDTVTLGDEEARARR 154 (224)
Q Consensus 123 ~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~ 154 (224)
+++..+|++++ ++++|+++..++.+.....
T Consensus 204 ~~i~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 204 GQVRQFCTKIA--WIEGGKLKDYGELDDVLPK 233 (264)
T ss_pred HHHHHHcCEEE--EEECCEEEEeCCHHHHHHH
Confidence 98889999997 4456778888887765543
No 141
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=8.3e-27 Score=192.67 Aligned_cols=138 Identities=14% Similarity=0.124 Sum_probs=98.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------------CCCcccCCCCcccc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------------TSNEIGGDGDIPHS 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------------~~~~~~~~~~~~~~ 59 (224)
.-.+++ ++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+.......++
T Consensus 18 sl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 95 (214)
T cd03297 18 DFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD-GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVREN 95 (214)
T ss_pred eEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHH
Confidence 346889 999999999999999999999999887 56655422 11111100000000
Q ss_pred h----------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 60 A----------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 60 ~----------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
. ....+.+++ .|+||+||++||++++.+|+++||||||++||... +.
T Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 175 (214)
T cd03297 96 LAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELK 175 (214)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 0 001122222 36999999999999999999999999999999653 34
Q ss_pred HHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEE
Q 027392 107 SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 144 (224)
Q Consensus 107 ~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~ 144 (224)
+++++ |.|+|++||+.++...+||+++. + .+|+++.
T Consensus 176 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~-l-~~G~i~~ 212 (214)
T cd03297 176 QIKKNLNIPVIFVTHDLSEAEYLADRIVV-M-EDGRLQY 212 (214)
T ss_pred HHHHHcCcEEEEEecCHHHHHHhcCEEEE-E-ECCEEEe
Confidence 44444 89999999999989899999974 4 4455554
No 142
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.94 E-value=1.2e-26 Score=197.50 Aligned_cols=146 Identities=16% Similarity=0.221 Sum_probs=103.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccC--CCeEEE------------------------EcCCCcccCCCCcc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--QKRVVI------------------------VDTSNEIGGDGDIP 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~--~~~i~~------------------------~~~~~~~~~~~~~~ 57 (224)
-.+.+||+++|+||||||||||+++|+|+++|+. +|.|.+ +.+...+.....+.
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 104 (262)
T PRK09984 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVL 104 (262)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHH
Confidence 3678999999999999999999999999998752 244433 22221111100000
Q ss_pred cc--------------------------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHh
Q 027392 58 HS--------------------------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 101 (224)
Q Consensus 58 ~~--------------------------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD 101 (224)
++ .....+.+++ .|+||+||++||++++.+|++|||||||++||
T Consensus 105 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 184 (262)
T PRK09984 105 ENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLD 184 (262)
T ss_pred HHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCC
Confidence 00 0001112222 36999999999999999999999999999999
Q ss_pred HHH-------HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHH
Q 027392 102 AHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 151 (224)
Q Consensus 102 ~~~-------~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~ 151 (224)
... ++++++ .|.|||++||+.+++..+||+++ ++.+|+++..++++..
T Consensus 185 ~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~--~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 185 PESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIV--ALRQGHVFYDGSSQQF 240 (262)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHh
Confidence 653 344544 48999999999998889999997 4455677777777653
No 143
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.94 E-value=1.1e-26 Score=196.63 Aligned_cols=146 Identities=17% Similarity=0.212 Sum_probs=105.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC-------------------CcccC---CCC--c-cc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-------------------NEIGG---DGD--I-PH 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~-------------------~~~~~---~~~--~-~~ 58 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+.. ..+++ ... . +.
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 102 (253)
T TIGR02323 24 FDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD-HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMR 102 (253)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCcc
Confidence 468999999999999999999999999999887 5766653211 00110 000 0 00
Q ss_pred -----ch-------------------hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH
Q 027392 59 -----SA-------------------IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 103 (224)
Q Consensus 59 -----~~-------------------~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~ 103 (224)
+. ....+.+++ .|+||+||++||+|++.+|++|||||||++||..
T Consensus 103 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~ 182 (253)
T TIGR02323 103 VSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 182 (253)
T ss_pred ccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 00 000122222 3689999999999999999999999999999965
Q ss_pred H-------HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 104 A-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 104 ~-------~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
. +.++.+ .+.|+|++||+.+++..+||+++ ++.+|+++..+++....
T Consensus 183 ~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~--~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 183 VQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLL--VMQQGRVVESGLTDQVL 237 (253)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEECCEEEEECCHHHHh
Confidence 3 334443 48999999999998988999997 44557788777766554
No 144
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=4e-27 Score=196.93 Aligned_cols=146 Identities=21% Similarity=0.225 Sum_probs=106.5
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc---------cc----------CC---------
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE---------IG----------GD--------- 53 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~---------~~----------~~--------- 53 (224)
|+=.|++|++++++|||||||||++|+|+|++.|+ +|.|.+.+-.+. +. ++
T Consensus 43 isf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~-~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v 121 (325)
T COG4586 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT-SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEV 121 (325)
T ss_pred eeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC-CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHH
Confidence 34468999999999999999999999999999998 688776432111 00 00
Q ss_pred ----CCcccchhh-----HHhH----------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHH
Q 027392 54 ----GDIPHSAIG-----TARR----------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRS 107 (224)
Q Consensus 54 ----~~~~~~~~~-----~~~~----------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~ 107 (224)
..++...+. ..+- +.-.|-|||+|+.||++|+++|++|+|||||-+||..+ +++
T Consensus 122 ~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke 201 (325)
T COG4586 122 LKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE 201 (325)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHH
Confidence 001111000 0011 11236899999999999999999999999999999543 333
Q ss_pred H-HHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHH
Q 027392 108 I-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 150 (224)
Q Consensus 108 ~-~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~ 150 (224)
. .+.+.||+++||+++....+|++++ +++.|+++..|+-..
T Consensus 202 ~n~~~~aTVllTTH~~~di~~lc~rv~--~I~~Gqlv~dg~l~~ 243 (325)
T COG4586 202 YNEERQATVLLTTHIFDDIATLCDRVL--LIDQGQLVFDGTLAQ 243 (325)
T ss_pred HHHhhCceEEEEecchhhHHHhhhheE--EeeCCcEeecccHHH
Confidence 3 3568999999999999999999997 667788877755443
No 145
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.94 E-value=1.2e-26 Score=197.76 Aligned_cols=146 Identities=14% Similarity=0.150 Sum_probs=106.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE----------------------cCCCc--ccCCCCcccc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV----------------------DTSNE--IGGDGDIPHS 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~----------------------~~~~~--~~~~~~~~~~ 59 (224)
-.|++|++++|+||||||||||+++|+|+++|+ .|.|.+. .+... +.......++
T Consensus 32 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~ 110 (265)
T TIGR02769 32 LSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA-QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQI 110 (265)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHH
Confidence 368999999999999999999999999999887 5655442 22110 0000000000
Q ss_pred -------------------hhhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-----
Q 027392 60 -------------------AIGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----- 104 (224)
Q Consensus 60 -------------------~~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~----- 104 (224)
.....+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~ 190 (265)
T TIGR02769 111 IGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVIL 190 (265)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0001122332 36899999999999999999999999999999643
Q ss_pred --HHHHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 --CRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 --~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.+++++ |.|||++||+.+.+..+||+++ ++++|+++..++.+...
T Consensus 191 ~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 191 ELLRKLQQAFGTAYLFITHDLRLVQSFCQRVA--VMDKGQIVEECDVAQLL 239 (265)
T ss_pred HHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEE--EEeCCEEEEECCHHHHc
Confidence 3445544 8999999999999989999997 44567888888877654
No 146
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.94 E-value=1.2e-26 Score=191.66 Aligned_cols=140 Identities=13% Similarity=0.178 Sum_probs=100.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-----------------EcCCCcccCCCCcccch------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-----------------VDTSNEIGGDGDIPHSA------ 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-----------------~~~~~~~~~~~~~~~~~------ 60 (224)
-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+ +.+...+.......++.
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~ 97 (213)
T TIGR01277 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA-SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHP 97 (213)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhc
Confidence 368899999999999999999999999999887 565544 22221111100000000
Q ss_pred ------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-
Q 027392 61 ------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE- 110 (224)
Q Consensus 61 ------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~- 110 (224)
....+.+++ .|+||+||++||++++.+|+++||||||++||... +.++.+
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 177 (213)
T TIGR01277 98 GLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE 177 (213)
T ss_pred cCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 001122222 36999999999999999999999999999999653 444554
Q ss_pred cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcC
Q 027392 111 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 146 (224)
Q Consensus 111 ~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~ 146 (224)
.+.|+|++||+.++...+||+++. +.+|+++..+
T Consensus 178 ~~~tii~vsh~~~~~~~~~d~v~~--l~~g~i~~~~ 211 (213)
T TIGR01277 178 RQRTLLMVTHHLSDARAIASQIAV--VSQGKIKVVS 211 (213)
T ss_pred cCCEEEEEeCCHHHHHhhcCeEEE--EECCeEEEec
Confidence 388999999999988889999974 4556666554
No 147
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.3e-26 Score=198.73 Aligned_cols=146 Identities=14% Similarity=0.223 Sum_probs=106.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc---------------------CCCc-ccCCCCcccch-
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD---------------------TSNE-IGGDGDIPHSA- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~---------------------~~~~-~~~~~~~~~~~- 60 (224)
-.|++||+++|+||||||||||+++|+|+++|+ .|.|.+.+ +... ..+...+..+.
T Consensus 23 l~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~ 101 (275)
T PRK13639 23 FKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT-SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVA 101 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHH
Confidence 468999999999999999999999999999887 56665422 1110 00000000000
Q ss_pred -----------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 61 -----------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 61 -----------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||... +.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~ 181 (275)
T PRK13639 102 FGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLY 181 (275)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 001122222 36999999999999999999999999999999643 34
Q ss_pred HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 107 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 107 ~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+++++|.|||++||+.+++..+||+++ ++.+|+++..++++...
T Consensus 182 ~l~~~~~til~vtH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 182 DLNKEGITIIISTHDVDLVPVYADKVY--VMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHHHCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHh
Confidence 455568999999999998888999997 44557788888877654
No 148
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.94 E-value=1.7e-26 Score=195.74 Aligned_cols=147 Identities=18% Similarity=0.202 Sum_probs=105.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCc----cCCCeEEE-----------------EcCCCc--ccCCCCcccc-
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSD----EFQKRVVI-----------------VDTSNE--IGGDGDIPHS- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~----~~~~~i~~-----------------~~~~~~--~~~~~~~~~~- 59 (224)
-.+.+|++++|+||||||||||+++|+|+++| + .|.|.+ +.+... +.....+...
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~-~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~ 102 (254)
T PRK10418 24 LTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT-AGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHA 102 (254)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCc-CCEEEECCeeccccccccceEEEEecCCccccCccccHHHHH
Confidence 46899999999999999999999999999987 5 455443 222211 0000000000
Q ss_pred ---------------hhhHHhHcC-------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------
Q 027392 60 ---------------AIGTARRMQ-------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------- 104 (224)
Q Consensus 60 ---------------~~~~~~~~~-------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------- 104 (224)
.....+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~ 182 (254)
T PRK10418 103 RETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDL 182 (254)
T ss_pred HHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHH
Confidence 000112222 246899999999999999999999999999999543
Q ss_pred HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 ~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
++++.+ .|.|||++||+.++...+||+++ ++.+|+++..++++....
T Consensus 183 L~~~~~~~g~til~~sH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 183 LESIVQKRALGMLLVTHDMGVVARLADDVA--VMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHHhcCcEEEEEecCHHHHHHhCCEEE--EEECCEEEEecCHHHHhh
Confidence 344444 48999999999998888999997 445677888877766543
No 149
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.94 E-value=1.2e-26 Score=190.09 Aligned_cols=143 Identities=16% Similarity=0.146 Sum_probs=102.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcC--CccCCCeEEEEcCCC-cc------c-CCCCcccch--------hhHHh
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQKRVVIVDTSN-EI------G-GDGDIPHSA--------IGTAR 65 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l--~~~~~~~i~~~~~~~-~~------~-~~~~~~~~~--------~~~~~ 65 (224)
-.+.+|++++|+|+||||||||+++|+|+. .|+ .|.+.+.+..- .. . .....++.. .....
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~ 99 (200)
T cd03217 21 LTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT-EGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR 99 (200)
T ss_pred eEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC-ccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHh
Confidence 368999999999999999999999999994 566 57776643210 00 0 000111110 00012
Q ss_pred Hc-CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHh-hccceeeec
Q 027392 66 RM-QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENI-IKNPILSDL 136 (224)
Q Consensus 66 ~~-~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~-~~d~v~~~l 136 (224)
.+ .-.|+||+||+++|++++.+|+++||||||++||... +.++++++.|+|++||+.++... +||+++ +
T Consensus 100 ~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~--~ 177 (200)
T cd03217 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVH--V 177 (200)
T ss_pred hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEE--E
Confidence 33 3468999999999999999999999999999999543 34455568999999999998887 799997 4
Q ss_pred cCCeeEEEcCCHH
Q 027392 137 IGGVDTVTLGDEE 149 (224)
Q Consensus 137 ~~~~~~v~~~~~~ 149 (224)
+.+|+++..+..+
T Consensus 178 l~~G~i~~~~~~~ 190 (200)
T cd03217 178 LYDGRIVKSGDKE 190 (200)
T ss_pred EECCEEEEEccHH
Confidence 4556777776443
No 150
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.6e-26 Score=197.88 Aligned_cols=145 Identities=15% Similarity=0.184 Sum_probs=104.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE----------------EEcCCCccc--CCCC---------c
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV----------------IVDTSNEIG--GDGD---------I 56 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~----------------~~~~~~~~~--~~~~---------~ 56 (224)
-.+++|++++|+||||||||||+|+|+|+++|+ .|.+. |+.+..... .... .
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~ 106 (272)
T PRK15056 28 FTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA-SGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRY 106 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccc
Confidence 368899999999999999999999999999887 45443 333322110 0000 0
Q ss_pred --------ccc-----hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 57 --------PHS-----AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 57 --------~~~-----~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
+.. .....+.+++ .|+||+||++||++++.+|++|||||||++||... +.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~ 186 (272)
T PRK15056 107 GHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLR 186 (272)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 000 0011122222 37999999999999999999999999999999643 44
Q ss_pred HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 107 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 107 ~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+++++|.|||++||+.+++..+||+++ +. +|+++..++++...
T Consensus 187 ~~~~~g~tviivsH~~~~~~~~~d~v~--~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 187 ELRDEGKTMLVSTHNLGSVTEFCDYTV--MV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEE--EE-CCEEEeecCHHhcc
Confidence 555668999999999998889999985 44 46777777776543
No 151
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.4e-26 Score=197.41 Aligned_cols=147 Identities=15% Similarity=0.205 Sum_probs=105.9
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-------------------cCCCcccCCCC--------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-------------------DTSNEIGGDGD-------- 55 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-------------------~~~~~~~~~~~-------- 55 (224)
+-.+.+|++++|+||||||||||+++|+|+++|+ .|.+.+. .+...+.....
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~ 105 (265)
T PRK10253 27 TVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA-HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARG 105 (265)
T ss_pred ceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhC
Confidence 3468899999999999999999999999999887 5655442 22111110000
Q ss_pred -cc---------cc----hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------
Q 027392 56 -IP---------HS----AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------- 104 (224)
Q Consensus 56 -~~---------~~----~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------- 104 (224)
.+ .. .....+.+++ .|+||+||++||+|++.+|++|||||||++||...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 185 (265)
T PRK10253 106 RYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLEL 185 (265)
T ss_pred cccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 00 00 0001122222 36999999999999999999999999999999653
Q ss_pred HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 ~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.++.+ .|.|+|++||+.+++..+||+++ ++.+|+++..+++....
T Consensus 186 L~~l~~~~~~tiii~tH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 186 LSELNREKGYTLAAVLHDLNQACRYASHLI--ALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHh
Confidence 344444 48999999999999999999997 44557778777776644
No 152
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.94 E-value=1.3e-26 Score=193.20 Aligned_cols=138 Identities=16% Similarity=0.182 Sum_probs=99.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-----cccCC--CCcccch----------------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-----EIGGD--GDIPHSA---------------- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-----~~~~~--~~~~~~~---------------- 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+... ..... ..+.++.
T Consensus 43 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 121 (224)
T cd03220 43 FEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD-SGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDE 121 (224)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHH
Confidence 368999999999999999999999999999887 67776532110 00000 0000000
Q ss_pred --hhHHhHcC----------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeC
Q 027392 61 --IGTARRMQ----------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHG 121 (224)
Q Consensus 61 --~~~~~~~~----------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~ 121 (224)
....+.++ -.|+||+||++||++++.+|++|||||||++||... +.++++++.|||++||+
T Consensus 122 ~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~ 201 (224)
T cd03220 122 KIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHD 201 (224)
T ss_pred HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 00011122 236999999999999999999999999999999653 34455568899999999
Q ss_pred cchHHhhccceeeeccCCeeEEE
Q 027392 122 EWLENIIKNPILSDLIGGVDTVT 144 (224)
Q Consensus 122 ~~~~~~~~d~v~~~l~~~~~~v~ 144 (224)
.++...+||+++. + .+|+++.
T Consensus 202 ~~~~~~~~d~i~~-l-~~G~i~~ 222 (224)
T cd03220 202 PSSIKRLCDRALV-L-EKGKIRF 222 (224)
T ss_pred HHHHHHhCCEEEE-E-ECCEEEe
Confidence 9988899999974 4 4455544
No 153
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.94 E-value=1.2e-26 Score=191.30 Aligned_cols=129 Identities=16% Similarity=0.276 Sum_probs=94.7
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc---------------------CCCcccCCCCcccch---
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD---------------------TSNEIGGDGDIPHSA--- 60 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~---------------------~~~~~~~~~~~~~~~--- 60 (224)
.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+.......++.
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~ 100 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD-SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA 100 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhH
Confidence 68899999999999999999999999999887 56665432 111110000000000
Q ss_pred ----------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHH
Q 027392 61 ----------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRS 107 (224)
Q Consensus 61 ----------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~ 107 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||... +.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 180 (213)
T cd03262 101 PIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKD 180 (213)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 001122222 36999999999999999999999999999999643 345
Q ss_pred HHHcCCEEEEEEeCcchHHhhccceee
Q 027392 108 IAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 108 ~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
+++.|.|+|++||+.++...+||+++.
T Consensus 181 ~~~~~~tvi~~sh~~~~~~~~~d~i~~ 207 (213)
T cd03262 181 LAEEGMTMVVVTHEMGFAREVADRVIF 207 (213)
T ss_pred HHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 555689999999999989899999964
No 154
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=2.4e-26 Score=194.24 Aligned_cols=132 Identities=17% Similarity=0.231 Sum_probs=95.7
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE-------EEcCCCcccCCCCcccc--------------hhhH
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------IVDTSNEIGGDGDIPHS--------------AIGT 63 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~-------~~~~~~~~~~~~~~~~~--------------~~~~ 63 (224)
.+++|++++|+||||||||||+++|+|+++|+ .|.+. ++.+.........+.+. ....
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~-~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 99 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPD-EGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEI 99 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHH
Confidence 46789999999999999999999999999887 45443 44333221111000000 0001
Q ss_pred HhHcC----------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-cCCEEEEEEeCcchH
Q 027392 64 ARRMQ----------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLE 125 (224)
Q Consensus 64 ~~~~~----------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~-~g~tvi~~tH~~~~~ 125 (224)
.+.++ -.|+||+||++||++|+.+|+++||||||++||... ++++++ .+.|||++||+.+++
T Consensus 100 l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~ 179 (246)
T cd03237 100 AKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMI 179 (246)
T ss_pred HHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 11222 247999999999999999999999999999999653 344443 489999999999999
Q ss_pred HhhccceeeeccC
Q 027392 126 NIIKNPILSDLIG 138 (224)
Q Consensus 126 ~~~~d~v~~~l~~ 138 (224)
..+||+++. +.+
T Consensus 180 ~~~~d~i~~-l~~ 191 (246)
T cd03237 180 DYLADRLIV-FEG 191 (246)
T ss_pred HHhCCEEEE-EcC
Confidence 999999974 544
No 155
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.94 E-value=1.4e-26 Score=193.04 Aligned_cols=136 Identities=19% Similarity=0.195 Sum_probs=95.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------------CCCcccCCCCcccch
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------------TSNEIGGDGDIPHSA 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------------~~~~~~~~~~~~~~~ 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+.......++.
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l 109 (228)
T PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGS-SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENV 109 (228)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHH
Confidence 368899999999999999999999999999887 56554421 111110000000000
Q ss_pred ------------------hhHHhHcC----------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 61 ------------------IGTARRMQ----------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 61 ------------------~~~~~~~~----------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
....+.++ -.|+||+||++||++++.+|++|||||||++||... +
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 189 (228)
T PRK10584 110 ELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLL 189 (228)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 00011222 236999999999999999999999999999999543 3
Q ss_pred HHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEE
Q 027392 106 RSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV 143 (224)
Q Consensus 106 ~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v 143 (224)
.++++ .|.|||++||+.++.+. ||+++. + .+|+++
T Consensus 190 ~~~~~~~~~tii~~sH~~~~~~~-~d~i~~-l-~~g~i~ 225 (228)
T PRK10584 190 FSLNREHGTTLILVTHDLQLAAR-CDRRLR-L-VNGQLQ 225 (228)
T ss_pred HHHHHhcCCEEEEEecCHHHHHh-CCEEEE-E-ECCEEE
Confidence 44444 48899999999987754 999874 4 445544
No 156
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.7e-27 Score=189.41 Aligned_cols=125 Identities=18% Similarity=0.302 Sum_probs=92.2
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-ccc------CCCCcccc--hh--hHHhHcCCCCcc
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIG------GDGDIPHS--AI--GTARRMQVPEPS 73 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-~~~------~~~~~~~~--~~--~~~~~~~~~~~g 73 (224)
.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+... ... .....++. .+ ...+. +.|+|
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~--lLS~G 100 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIREN--ILSGG 100 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHH--hhCHH
Confidence 68899999999999999999999999999987 67776543210 000 00000110 00 11112 27899
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH-------HHHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 74 LQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 74 ~~qr~~la~al~~~p~llilDEp~~~lD~~~~-------~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
|+||++||++++.+|++|||||||++||.... .++. ++.|+|++||+.++... ||+++.
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~~~~ 166 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLSTIRD-ADRIIV 166 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHh-CCEEEE
Confidence 99999999999999999999999999996543 3333 36899999999988876 999863
No 157
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.94 E-value=1.6e-26 Score=194.00 Aligned_cols=138 Identities=18% Similarity=0.199 Sum_probs=97.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC-------------------CCcccCCCCcccch----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-------------------SNEIGGDGDIPHSA---- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~-------------------~~~~~~~~~~~~~~---- 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+. ...+.......++.
T Consensus 42 ~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~ 120 (236)
T cd03267 42 FTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT-SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLA 120 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHH
Confidence 368899999999999999999999999999887 566554211 00010000000000
Q ss_pred --------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH
Q 027392 61 --------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA 109 (224)
Q Consensus 61 --------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~ 109 (224)
....+.+++ .|+||+||+++|++++.+|++|||||||++||... +.+++
T Consensus 121 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 200 (236)
T cd03267 121 AIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200 (236)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 001122222 36999999999999999999999999999999653 34444
Q ss_pred H-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEE
Q 027392 110 E-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 144 (224)
Q Consensus 110 ~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~ 144 (224)
+ .+.|||++||+.++...+||+++. + .+|+++.
T Consensus 201 ~~~~~tiiivsH~~~~~~~~~d~i~~-l-~~G~i~~ 234 (236)
T cd03267 201 RERGTTVLLTSHYMKDIEALARRVLV-I-DKGRLLY 234 (236)
T ss_pred hcCCCEEEEEecCHHHHHHhCCEEEE-E-eCCEEEe
Confidence 4 378999999999988999999974 4 4455543
No 158
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.1e-26 Score=194.53 Aligned_cols=147 Identities=14% Similarity=0.117 Sum_probs=103.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc----CCCeEEEE-------------------cCCCcccCCCCcccch
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVIV-------------------DTSNEIGGDGDIPHSA 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~----~~~~i~~~-------------------~~~~~~~~~~~~~~~~ 60 (224)
-.+++|++++|+||||||||||+++|+|+++|. ..|.|.+. .+.........+.++.
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl 103 (250)
T PRK14247 24 LEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENV 103 (250)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHH
Confidence 368899999999999999999999999998741 14555432 2221111000000000
Q ss_pred --------------------hhHHhHcCC--------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH--
Q 027392 61 --------------------IGTARRMQV--------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-- 104 (224)
Q Consensus 61 --------------------~~~~~~~~~--------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-- 104 (224)
....+.+++ .|+||+||+++|++++.+|++|||||||++||...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~ 183 (250)
T PRK14247 104 ALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA 183 (250)
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 001122222 36999999999999999999999999999999653
Q ss_pred -----HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 -----CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 -----~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+.++. ++.|+|++||+.++...+||+++ ++.+|+++..++++....
T Consensus 184 ~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14247 184 KIESLFLELK-KDMTIVLVTHFPQQAARISDYVA--FLYKGQIVEWGPTREVFT 234 (250)
T ss_pred HHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEE--EEECCeEEEECCHHHHHc
Confidence 33333 47899999999998888999997 445677888888776543
No 159
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.94 E-value=2.1e-26 Score=194.24 Aligned_cols=146 Identities=15% Similarity=0.160 Sum_probs=104.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc----CCCeEEEEc---------------------CCCcccCCCCcc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVIVD---------------------TSNEIGGDGDIP 57 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~----~~~~i~~~~---------------------~~~~~~~~~~~~ 57 (224)
+-.+++||+++|+|+||||||||+++|+|+++|+ ..|.|.+.+ +...+.. ....
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~ 99 (247)
T TIGR00972 21 NLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIY 99 (247)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHH
Confidence 3468999999999999999999999999999875 136555422 1111100 0000
Q ss_pred cch-------------------hhHHhHcCC--------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH
Q 027392 58 HSA-------------------IGTARRMQV--------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104 (224)
Q Consensus 58 ~~~-------------------~~~~~~~~~--------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~ 104 (224)
++. ....+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 100 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~ 179 (247)
T TIGR00972 100 DNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIA 179 (247)
T ss_pred HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 000 000112222 36899999999999999999999999999999653
Q ss_pred -------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 -------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 -------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.++++ +.|+|++||+.++...+||+++ ++++|+++..++++...
T Consensus 180 ~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 180 TGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTA--FFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHH
Confidence 334444 4899999999998999999997 45567788777776554
No 160
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.94 E-value=1.9e-26 Score=193.63 Aligned_cols=143 Identities=18% Similarity=0.145 Sum_probs=101.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcC--CccCCCeEEEEc--------------------CCCcccCCC-------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQKRVVIVD--------------------TSNEIGGDG------- 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l--~~~~~~~i~~~~--------------------~~~~~~~~~------- 54 (224)
-.+++|++++|+||||||||||+|+|+|++ +|+ .|.|.+.+ +........
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~ 99 (243)
T TIGR01978 21 LTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT-SGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLR 99 (243)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-cceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHH
Confidence 468999999999999999999999999995 455 45554422 111110000
Q ss_pred -----C--------cc-cc----hhhHH-----------hHcCC-CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH
Q 027392 55 -----D--------IP-HS----AIGTA-----------RRMQV-PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104 (224)
Q Consensus 55 -----~--------~~-~~----~~~~~-----------~~~~~-~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~ 104 (224)
. .. .. ..... ..... .|+||+||++||++++.+|++|||||||++||...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 179 (243)
T TIGR01978 100 SALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDA 179 (243)
T ss_pred HHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 0 00 00 00000 11122 57899999999999999999999999999999543
Q ss_pred -------HHHHHHcCCEEEEEEeCcchHHhh-ccceeeeccCCeeEEEcCCHH
Q 027392 105 -------CRSIAERGVMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEE 149 (224)
Q Consensus 105 -------~~~~~~~g~tvi~~tH~~~~~~~~-~d~v~~~l~~~~~~v~~~~~~ 149 (224)
+++++++|.|||++||+.++...+ ||+++ ++.+|+++..++.+
T Consensus 180 ~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~--~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 180 LKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVH--VLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEE--EEeCCEEEEecCHH
Confidence 445555689999999999988888 89997 45567777776665
No 161
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.94 E-value=1.4e-26 Score=214.04 Aligned_cols=145 Identities=17% Similarity=0.134 Sum_probs=105.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc--------------------CCCcccCCCCcccc----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD--------------------TSNEIGGDGDIPHS---- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~--------------------~~~~~~~~~~~~~~---- 59 (224)
-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+.+ +...+.....+.++
T Consensus 32 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 110 (510)
T PRK15439 32 FTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD-SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFG 110 (510)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcc
Confidence 368999999999999999999999999999887 56665432 11111000000000
Q ss_pred ----------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcC
Q 027392 60 ----------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERG 112 (224)
Q Consensus 60 ----------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g 112 (224)
.....+.+++ .|+||+||++||++|+.+|++|||||||++||+.. +++++++|
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g 190 (510)
T PRK15439 111 LPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQG 190 (510)
T ss_pred cccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 0001122222 37999999999999999999999999999999643 44555668
Q ss_pred CEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHH
Q 027392 113 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 151 (224)
Q Consensus 113 ~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~ 151 (224)
.|||++||+.+++..+||+++ ++.+|+++..++.+..
T Consensus 191 ~tiiivtHd~~~~~~~~d~i~--~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 191 VGIVFISHKLPEIRQLADRIS--VMRDGTIALSGKTADL 227 (510)
T ss_pred CEEEEEeCCHHHHHHhCCEEE--EEECCEEEEecChHHc
Confidence 999999999999999999997 4456777777766543
No 162
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.3e-26 Score=191.06 Aligned_cols=135 Identities=19% Similarity=0.146 Sum_probs=96.3
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC------------------CCcccCCCCcccch------
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT------------------SNEIGGDGDIPHSA------ 60 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~------------------~~~~~~~~~~~~~~------ 60 (224)
.+++| +++|+||||||||||+++|+|+++|+ .|.+.+.+. ...+.....+.++.
T Consensus 22 ~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 99 (211)
T cd03264 22 TLGPG-MYGLLGPNGAGKTTLMRILATLTPPS-SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWL 99 (211)
T ss_pred EEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHH
Confidence 67889 99999999999999999999999887 566655321 11111000000000
Q ss_pred ------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHc
Q 027392 61 ------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAER 111 (224)
Q Consensus 61 ------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~ 111 (224)
....+.+++ .|+||+||+++|++++.+|++|||||||++||... ++++++
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~- 178 (211)
T cd03264 100 KGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE- 178 (211)
T ss_pred hCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-
Confidence 001112222 36999999999999999999999999999999653 334443
Q ss_pred CCEEEEEEeCcchHHhhccceeeeccCCeeEEE
Q 027392 112 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 144 (224)
Q Consensus 112 g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~ 144 (224)
+.|+|++||+.++...+||+++. + ++|+++.
T Consensus 179 ~~tii~vsH~~~~~~~~~d~i~~-l-~~g~i~~ 209 (211)
T cd03264 179 DRIVILSTHIVEDVESLCNQVAV-L-NKGKLVF 209 (211)
T ss_pred CCEEEEEcCCHHHHHHhCCEEEE-E-ECCEEEe
Confidence 58999999999988889999974 4 4455554
No 163
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.6e-26 Score=198.68 Aligned_cols=145 Identities=17% Similarity=0.248 Sum_probs=104.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCc-ccCCCCcccch---
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNE-IGGDGDIPHSA--- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~-~~~~~~~~~~~--- 60 (224)
-.|++||+++|+||||||||||+++|+|+++|+ .|+|.+.+ +... ......+..+.
T Consensus 28 l~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~-~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~ 106 (279)
T PRK13635 28 FSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE-AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFG 106 (279)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhh
Confidence 368999999999999999999999999999987 56665432 1110 00000000000
Q ss_pred ---------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHH
Q 027392 61 ---------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSI 108 (224)
Q Consensus 61 ---------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~ 108 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||... +.++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l 186 (279)
T PRK13635 107 LENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQL 186 (279)
T ss_pred HhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 001112222 36999999999999999999999999999999643 4455
Q ss_pred HHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 109 AER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 109 ~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
.++ |.|||++||++++.. .||+++ ++.+|+++..++.+...
T Consensus 187 ~~~~~~tilivsH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 187 KEQKGITVLSITHDLDEAA-QADRVI--VMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHcCCCEEEEEecCHHHHH-cCCEEE--EEECCEEEEECCHHHHh
Confidence 554 899999999998886 599997 44556778887776544
No 164
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.6e-26 Score=196.25 Aligned_cols=145 Identities=14% Similarity=0.121 Sum_probs=104.1
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCc-----cCCCeEEEEc---------------------CCCcccCCCCcc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKRVVIVD---------------------TSNEIGGDGDIP 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~-----~~~~~i~~~~---------------------~~~~~~~~~~~~ 57 (224)
-.+++|++++|+|+||||||||+++|+|++++ + .|.|.+.+ +...+.. ....
T Consensus 33 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~-~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~ 110 (258)
T PRK14268 33 MQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI-EGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIY 110 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCc-ceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHH
Confidence 36899999999999999999999999999874 3 46555421 1111100 0000
Q ss_pred cch------------------hhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027392 58 HSA------------------IGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 58 ~~~------------------~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
++. ....+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 111 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 190 (258)
T PRK14268 111 DNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPIST 190 (258)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHH
Confidence 000 00112222 136899999999999999999999999999999643
Q ss_pred ------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 ------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 ------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
++++. ++.|||++||+.++...+||+++ ++++|+++..++++..+.
T Consensus 191 ~~l~~~l~~l~-~~~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 191 ARIEDLIMNLK-KDYTIVIVTHNMQQAARISDYTG--FFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHHHh-hCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhc
Confidence 33443 37899999999998889999997 456677888888776543
No 165
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.7e-26 Score=199.32 Aligned_cols=146 Identities=14% Similarity=0.157 Sum_probs=105.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC---------------CcccCCC----------Cccc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS---------------NEIGGDG----------DIPH 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~---------------~~~~~~~----------~~~~ 58 (224)
-.+++|++++|+||||||||||+|+|+|+++|+ .|.+.+.+.. ..+++.. .+.+
T Consensus 32 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 110 (289)
T PRK13645 32 LTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE-TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEK 110 (289)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHH
Confidence 468999999999999999999999999999887 5665542110 0011000 0000
Q ss_pred ch------------------hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-----
Q 027392 59 SA------------------IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----- 104 (224)
Q Consensus 59 ~~------------------~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~----- 104 (224)
+. ....+.+++ .|+||+||++||+|++.+|++|||||||++||...
T Consensus 111 nl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~ 190 (289)
T PRK13645 111 DIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFI 190 (289)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence 00 001122222 36899999999999999999999999999999653
Q ss_pred --HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 --CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 --~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.++.+ .+.|||++||+.+++..+||+++ ++.+|+++..++.+...
T Consensus 191 ~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 191 NLFERLNKEYKKRIIMVTHNMDQVLRIADEVI--VMHEGKVISIGSPFEIF 239 (289)
T ss_pred HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHh
Confidence 344444 48999999999998889999997 44557788777776554
No 166
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.94 E-value=1.7e-26 Score=212.49 Aligned_cols=146 Identities=16% Similarity=0.108 Sum_probs=106.7
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC----------cccCCC-----------------C
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----------EIGGDG-----------------D 55 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~----------~~~~~~-----------------~ 55 (224)
+-.+++|++++|+||||||||||+|+|+|+++|+ .|.+.+..... .+++.. .
T Consensus 23 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~-~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~ 101 (490)
T PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLL-SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRT 101 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhcccc
Confidence 3478999999999999999999999999999887 57765422110 011000 0
Q ss_pred cccc----------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHH
Q 027392 56 IPHS----------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSI 108 (224)
Q Consensus 56 ~~~~----------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~ 108 (224)
.... .....+.+++ .|+||+||++||++++.+|++|||||||++||+.. +.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 181 (490)
T PRK10938 102 TAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL 181 (490)
T ss_pred HHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 0000 0001122222 37999999999999999999999999999999643 4455
Q ss_pred HHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHH
Q 027392 109 AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 151 (224)
Q Consensus 109 ~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~ 151 (224)
+++|.|||++||+.+++..+||+++ ++++|+++..++++..
T Consensus 182 ~~~g~tvii~tH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 182 HQSGITLVLVLNRFDEIPDFVQFAG--VLADCTLAETGEREEI 222 (490)
T ss_pred HhcCCeEEEEeCCHHHHHhhCCEEE--EEECCEEEEeCCHHHH
Confidence 5668999999999999999999997 4456777777776654
No 167
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.6e-26 Score=194.27 Aligned_cols=148 Identities=11% Similarity=0.128 Sum_probs=104.7
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc----CCCeEEEEc---------------------CCCcccCCCCcc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVIVD---------------------TSNEIGGDGDIP 57 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~----~~~~i~~~~---------------------~~~~~~~~~~~~ 57 (224)
+-.+++||+++|+||||||||||+++|+|+++|+ ..|.|.+.+ +...+.....+.
T Consensus 24 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 103 (253)
T PRK14267 24 DLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIY 103 (253)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHH
Confidence 3468999999999999999999999999999763 246554421 111111000000
Q ss_pred cc--------------------hhhHHhHcCC--------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH
Q 027392 58 HS--------------------AIGTARRMQV--------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 103 (224)
Q Consensus 58 ~~--------------------~~~~~~~~~~--------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~ 103 (224)
++ .....+.+++ .|+||+||++||++++.+|++|||||||++||..
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 183 (253)
T PRK14267 104 DNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPV 183 (253)
T ss_pred HHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 00 0001122222 3689999999999999999999999999999965
Q ss_pred H-------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 104 A-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 104 ~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
. ++++.+ +.|+|++||+.+++..+||+++ ++.+|+++..+++.....
T Consensus 184 ~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 237 (253)
T PRK14267 184 GTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVA--FLYLGKLIEVGPTRKVFE 237 (253)
T ss_pred HHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEE--EEECCEEEEeCCHHHHHh
Confidence 3 334433 6899999999998889999997 455677888888776543
No 168
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3e-26 Score=192.14 Aligned_cols=146 Identities=14% Similarity=0.211 Sum_probs=104.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-----------------cCCCcccCCCCcccc-------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-----------------DTSNEIGGDGDIPHS------- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~------- 59 (224)
-.+.+|++++|+||||||||||+++|+|+++|+ .|.+.+. .+...+........+
T Consensus 20 ~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~-~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 98 (235)
T cd03299 20 LEVERGDYFVILGPTGSGKSVLLETIAGFIKPD-SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKK 98 (235)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHH
Confidence 368999999999999999999999999999987 5655442 221111110000000
Q ss_pred -----------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHc
Q 027392 60 -----------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAER 111 (224)
Q Consensus 60 -----------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~ 111 (224)
.....+.+++ .|+||+||++||++++.+|++++|||||++||... ++++..+
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~ 178 (235)
T cd03299 99 RKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKE 178 (235)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh
Confidence 0011222332 37999999999999999999999999999999653 3344443
Q ss_pred -CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 112 -GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 112 -g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.|+|++||+..+...+||+++. + .+|+++..++.+...
T Consensus 179 ~~~tili~tH~~~~~~~~~d~i~~-l-~~G~i~~~~~~~~~~ 218 (235)
T cd03299 179 FGVTVLHVTHDFEEAWALADKVAI-M-LNGKLIQVGKPEEVF 218 (235)
T ss_pred cCCEEEEEecCHHHHHHhCCEEEE-E-ECCEEEEecCHHHHH
Confidence 89999999999988889999974 4 456777777765543
No 169
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2e-26 Score=196.84 Aligned_cols=145 Identities=16% Similarity=0.183 Sum_probs=103.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC----------cccCCC-----Ccc-----cc----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----------EIGGDG-----DIP-----HS---- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~----------~~~~~~-----~~~-----~~---- 59 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+... .+++.. .++ .+
T Consensus 30 l~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~ 108 (269)
T PRK13648 30 FNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK-SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFG 108 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhh
Confidence 367899999999999999999999999999887 56665432110 001000 000 00
Q ss_pred --------------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHH
Q 027392 60 --------------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSI 108 (224)
Q Consensus 60 --------------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~ 108 (224)
.....+.+++ .|+||+||++||+|++.+|++|||||||++||... +.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 188 (269)
T PRK13648 109 LENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKV 188 (269)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 0011122222 36899999999999999999999999999999653 3444
Q ss_pred HHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 109 AER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 109 ~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+++ |.|+|++||+.+++.. ||+++ ++.+|+++..++++...
T Consensus 189 ~~~~~~tiiivtH~~~~~~~-~d~i~--~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 189 KSEHNITIISITHDLSEAME-ADHVI--VMNKGTVYKEGTPTEIF 230 (269)
T ss_pred HHhcCCEEEEEecCchHHhc-CCEEE--EEECCEEEEecCHHHHh
Confidence 443 8999999999988875 99997 44567888888776554
No 170
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.94 E-value=2.9e-26 Score=192.41 Aligned_cols=146 Identities=15% Similarity=0.177 Sum_probs=104.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-----------------cCCCcccCCCCcccch------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-----------------DTSNEIGGDGDIPHSA------ 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-----------------~~~~~~~~~~~~~~~~------ 60 (224)
-.+.+|++++|+||||||||||+++|+|+++|+ .|.+.+. .+...+.......++.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~ 99 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD-SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEI 99 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHh
Confidence 368999999999999999999999999999887 5665442 1111111000000000
Q ss_pred ------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHc
Q 027392 61 ------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAER 111 (224)
Q Consensus 61 ------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~ 111 (224)
....+.+++ .|+||+||+++|++++.+|+++|||||+++||... +.+++++
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~ 179 (237)
T TIGR00968 100 RKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE 179 (237)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 000122222 36999999999999999999999999999999653 3344444
Q ss_pred -CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 112 -GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 112 -g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.|+|++||+.++...+||+++ .+.+|+++..++.+...
T Consensus 180 ~~~tvli~sH~~~~~~~~~d~i~--~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 180 VHVTTVFVTHDQEEAMEVADRIV--VMSNGKIEQIGSPDEVY 219 (237)
T ss_pred cCCEEEEEeCCHHHHHhhcCEEE--EEECCEEEEecCHHHHH
Confidence 7999999999998889999997 44567777777766554
No 171
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.5e-26 Score=193.44 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=101.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCC-----ccCCCeEEEE---------------------cCCCcccCCCCcc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQKRVVIV---------------------DTSNEIGGDGDIP 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~-----~~~~~~i~~~---------------------~~~~~~~~~~~~~ 57 (224)
-.+++|++++|+||||||||||+|+|+|+.. |+ .|.+.+. .+...+.. ..+.
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~-~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~ 104 (253)
T PRK14242 27 LEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV-EGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIF 104 (253)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCC-ceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHH
Confidence 3689999999999999999999999999864 33 4555432 22111110 0000
Q ss_pred cch-------------------hhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH
Q 027392 58 HSA-------------------IGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104 (224)
Q Consensus 58 ~~~-------------------~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~ 104 (224)
++. ....+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 105 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~ 184 (253)
T PRK14242 105 ENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIA 184 (253)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 000 00011222 247999999999999999999999999999999653
Q ss_pred -------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 -------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 -------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+++++ ++.|||++||+.++...+||+++ ++.+|+++..++++...
T Consensus 185 ~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 185 TQKIEELIHELK-ARYTIIIVTHNMQQAARVSDVTA--FFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHHHHh-cCCeEEEEEecHHHHHHhCCEEE--EEECCEEEEeCCHHHHH
Confidence 33443 47899999999998989999997 44557777777776544
No 172
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.3e-26 Score=197.85 Aligned_cols=146 Identities=14% Similarity=0.208 Sum_probs=104.4
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCC--CeEEEEc-------------------CCCc-ccCCCCcccc--
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--KRVVIVD-------------------TSNE-IGGDGDIPHS-- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~--~~i~~~~-------------------~~~~-~~~~~~~~~~-- 59 (224)
-.|++|++++|+||||||||||+++|+|+++|+.+ |.|.+.+ +... ......+.++
T Consensus 28 l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~ 107 (282)
T PRK13640 28 FSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVA 107 (282)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHH
Confidence 36899999999999999999999999999988732 5554422 1110 0000000000
Q ss_pred ----------------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 60 ----------------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 60 ----------------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
.....+.+++ .|+||+||++||+|++.+|++|||||||++||... +.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~ 187 (282)
T PRK13640 108 FGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187 (282)
T ss_pred hhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 0001222232 36999999999999999999999999999999543 34
Q ss_pred HHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 107 SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 107 ~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++.+ .|.|||++||++++.. .||+++ ++.+|+++..++++...
T Consensus 188 ~l~~~~g~tvli~tH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 188 KLKKKNNLTVISITHDIDEAN-MADQVL--VLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHhcCCEEEEEecCHHHHH-hCCEEE--EEECCEEEEeCCHHHHh
Confidence 4444 3899999999998875 799997 55667888888877654
No 173
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.94 E-value=2.2e-26 Score=210.33 Aligned_cols=148 Identities=14% Similarity=0.114 Sum_probs=108.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc------ccCCCCccc--------------ch---
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE------IGGDGDIPH--------------SA--- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~------~~~~~~~~~--------------~~--- 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+.... +........ ..
T Consensus 45 fsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~-sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~ 123 (549)
T PRK13545 45 FEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN-KGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEI 123 (549)
T ss_pred EEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-ceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHH
Confidence 368999999999999999999999999999987 677765321100 000000000 00
Q ss_pred -hhHHhHcC----------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCc
Q 027392 61 -IGTARRMQ----------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGE 122 (224)
Q Consensus 61 -~~~~~~~~----------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~ 122 (224)
....+.++ -.|+||+||++||+|++.+|++|||||||++||... +.+++++|.|||++||++
T Consensus 124 i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl 203 (549)
T PRK13545 124 IPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL 203 (549)
T ss_pred HHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 00111222 247999999999999999999999999999999653 344556689999999999
Q ss_pred chHHhhccceeeeccCCeeEEEcCCHHHHHHH
Q 027392 123 WLENIIKNPILSDLIGGVDTVTLGDEEARARR 154 (224)
Q Consensus 123 ~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~ 154 (224)
++...+||+++ ++.+|+++..++++.....
T Consensus 204 ~~i~~l~DrIi--vL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 204 SQVKSFCTKAL--WLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHHHhCCEEE--EEECCEEEEECCHHHHHhh
Confidence 99999999997 4455778888887765543
No 174
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.94 E-value=2.8e-26 Score=192.19 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=102.5
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-------------------cCCCcccCC--------C--C
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-------------------DTSNEIGGD--------G--D 55 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-------------------~~~~~~~~~--------~--~ 55 (224)
.+++|++++|+||||||||||+++|+|+++|+ .|.+.+. .+...+... . .
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~ 102 (237)
T cd03252 24 RIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE-NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPG 102 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCC
Confidence 68899999999999999999999999999887 5655442 222111100 0 0
Q ss_pred ccc-chhh---------HHh------------HcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 56 IPH-SAIG---------TAR------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 56 ~~~-~~~~---------~~~------------~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
... .... ... ...-.|+||+||++||++++.+|++|||||||++||... +.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 182 (237)
T cd03252 103 MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMH 182 (237)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 000 0000 001 112347999999999999999999999999999999654 33
Q ss_pred HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 107 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 107 ~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++. +|.|||++||+.++.. .||+++ ++++|+++..++++...
T Consensus 183 ~~~-~~~tiii~sH~~~~~~-~~d~v~--~l~~G~i~~~~~~~~~~ 224 (237)
T cd03252 183 DIC-AGRTVIIIAHRLSTVK-NADRII--VMEKGRIVEQGSHDELL 224 (237)
T ss_pred Hhc-CCCEEEEEeCCHHHHH-hCCEEE--EEECCEEEEEcCHHHHH
Confidence 443 4889999999998885 599987 45567788887776554
No 175
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2e-26 Score=212.97 Aligned_cols=145 Identities=15% Similarity=0.110 Sum_probs=105.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE--------------------cCCCcccCCCC------c
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV--------------------DTSNEIGGDGD------I 56 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~--------------------~~~~~~~~~~~------~ 56 (224)
+-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+. .+...+..... +
T Consensus 25 s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 103 (510)
T PRK09700 25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT-KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYI 103 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC-ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhh
Confidence 3468899999999999999999999999999887 4655442 22111100000 0
Q ss_pred c--------c-------ch----hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---
Q 027392 57 P--------H-------SA----IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 104 (224)
Q Consensus 57 ~--------~-------~~----~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~--- 104 (224)
. . .. ....+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~ 183 (510)
T PRK09700 104 GRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDY 183 (510)
T ss_pred ccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Confidence 0 0 00 001122232 37999999999999999999999999999999643
Q ss_pred ----HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHH
Q 027392 105 ----CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 150 (224)
Q Consensus 105 ----~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~ 150 (224)
+.+++++|.|||++||+.+++..+||+++ ++.+|+++..++++.
T Consensus 184 l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 184 LFLIMNQLRKEGTAIVYISHKLAEIRRICDRYT--VMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEeeecchhh
Confidence 44556678999999999999999999997 445577777766654
No 176
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.8e-26 Score=193.41 Aligned_cols=146 Identities=13% Similarity=0.087 Sum_probs=104.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc----CCCeEEEEc---------------------CCCcccCCCCcc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVIVD---------------------TSNEIGGDGDIP 57 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~----~~~~i~~~~---------------------~~~~~~~~~~~~ 57 (224)
+-.+++||+++|+||||||||||+++|+|+++|+ ..|.|.+.+ +...+.. ..+.
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~ 105 (254)
T PRK14273 27 NIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIY 105 (254)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHH
Confidence 3478999999999999999999999999999863 246555422 1111100 0000
Q ss_pred cc-------------------hhhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH
Q 027392 58 HS-------------------AIGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104 (224)
Q Consensus 58 ~~-------------------~~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~ 104 (224)
++ .....+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 106 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~ 185 (254)
T PRK14273 106 DNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIS 185 (254)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHH
Confidence 00 000011112 247999999999999999999999999999999543
Q ss_pred -------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 -------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 -------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.+++ ++.|+|++||+.+++..+||+++ ++.+|+++..++.....
T Consensus 186 ~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 186 TGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTA--FFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHH
Confidence 34443 46899999999998889999997 45567788888777654
No 177
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.94 E-value=7e-26 Score=187.45 Aligned_cols=147 Identities=14% Similarity=0.050 Sum_probs=103.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE-EEcCCCccc------CCCCcccch--------------h
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-IVDTSNEIG------GDGDIPHSA--------------I 61 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~-~~~~~~~~~------~~~~~~~~~--------------~ 61 (224)
+-.|++|++++|+||||||||||+|+|+|+++|+ .|.+. +......++ ......++. .
T Consensus 7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~-sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~ 85 (213)
T PRK15177 7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD-EGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFS 85 (213)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC-CCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHH
Confidence 4478999999999999999999999999999887 67775 322110011 000000000 0
Q ss_pred hH-H----------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH---H-HH--HcCCEEEEEEeCcch
Q 027392 62 GT-A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S-IA--ERGVMLIGTAHGEWL 124 (224)
Q Consensus 62 ~~-~----------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~---~-~~--~~g~tvi~~tH~~~~ 124 (224)
.. . ..+.-.|+||+||+++|++++.+|+++|+|||++++|..... + +. .++.++|++||++.+
T Consensus 86 ~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~ 165 (213)
T PRK15177 86 HFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRL 165 (213)
T ss_pred HHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHH
Confidence 00 0 112224799999999999999999999999999999964321 1 21 134689999999998
Q ss_pred HHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 125 ENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 125 ~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
...+||+++ ++++|+++..++-+...
T Consensus 166 ~~~~~d~i~--~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 166 IKEHCHAFG--VLLHGKITMCEDLAQAT 191 (213)
T ss_pred HHHhcCeeE--EEECCeEEEeCCHHHHH
Confidence 889999997 45567788877766543
No 178
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.94 E-value=4.2e-26 Score=192.27 Aligned_cols=144 Identities=16% Similarity=0.086 Sum_probs=101.4
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcC--CccCCCeEEEEcCC-----------CcccCC---C-------------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQKRVVIVDTS-----------NEIGGD---G------------- 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l--~~~~~~~i~~~~~~-----------~~~~~~---~------------- 54 (224)
-.|++|++++|+||||||||||+++|+|++ +|+ .|.+.+.+.. ..+++. .
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 100 (248)
T PRK09580 22 LEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT-GGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQ 100 (248)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC-ceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHH
Confidence 368999999999999999999999999995 465 4655442211 001000 0
Q ss_pred ----C---c-cc---ch---h----hHHhHcC------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH
Q 027392 55 ----D---I-PH---SA---I----GTARRMQ------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104 (224)
Q Consensus 55 ----~---~-~~---~~---~----~~~~~~~------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~ 104 (224)
. . .. .. . ...+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~ 180 (248)
T PRK09580 101 TALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 180 (248)
T ss_pred HhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHH
Confidence 0 0 00 00 0 0001111 357999999999999999999999999999999653
Q ss_pred -------HHHHHHcCCEEEEEEeCcchHHhh-ccceeeeccCCeeEEEcCCHHH
Q 027392 105 -------CRSIAERGVMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEEA 150 (224)
Q Consensus 105 -------~~~~~~~g~tvi~~tH~~~~~~~~-~d~v~~~l~~~~~~v~~~~~~~ 150 (224)
++++++.+.|||++||+.++...+ ||+++ ++++++++..++.+.
T Consensus 181 ~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~--~l~~g~i~~~g~~~~ 232 (248)
T PRK09580 181 LKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVH--VLYQGRIVKSGDFTL 232 (248)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEE--EEECCeEEEeCCHHH
Confidence 334556689999999999888877 89886 446677777777663
No 179
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.5e-26 Score=191.68 Aligned_cols=145 Identities=14% Similarity=0.193 Sum_probs=104.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCC---ccCCCeEEE-------------------EcCCCcccCCCCcc----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLS---DEFQKRVVI-------------------VDTSNEIGGDGDIP---- 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~---~~~~~~i~~-------------------~~~~~~~~~~~~~~---- 57 (224)
-.+++|++++|+||||||||||+++|+|++. |+ .|.|.+ +.+...+... ...
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~-~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~-tv~eni~ 100 (246)
T PRK14269 23 MQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKI-DGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVK-SIYENIS 100 (246)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCC-ceEEEECCEecccCCHHHHhhhEEEEecCCccccc-cHHHHhh
Confidence 4689999999999999999999999999974 34 455443 2222211110 000
Q ss_pred ------------cc----hhhHHhHcCC--------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH--
Q 027392 58 ------------HS----AIGTARRMQV--------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-- 105 (224)
Q Consensus 58 ------------~~----~~~~~~~~~~--------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~-- 105 (224)
.. .....+.+++ .|+||+||+++|++++.+|++|||||||++||....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~ 180 (246)
T PRK14269 101 YAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGV 180 (246)
T ss_pred hHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 00 0011223333 379999999999999999999999999999996543
Q ss_pred -----HHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 106 -----RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 106 -----~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
.++. ++.|+|++||+.++...+||+++ ++.+|+++..++......
T Consensus 181 l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 181 IEELLKELS-HNLSMIMVTHNMQQGKRVADYTA--FFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHHHh-CCCEEEEEecCHHHHHhhCcEEE--EEECCEEEEECCHHHHHh
Confidence 2333 48899999999998999999997 455678888887776553
No 180
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.8e-26 Score=193.90 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=103.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCc-----cCCCeEEEEc---------------------CCCcccCCCCcc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKRVVIVD---------------------TSNEIGGDGDIP 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~-----~~~~~i~~~~---------------------~~~~~~~~~~~~ 57 (224)
-.|++|++++|+||||||||||+++|+|+++| + .|.|.+.+ +...+... ...
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~-~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~ 117 (267)
T PRK14235 40 LDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV-TGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIY 117 (267)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC-ceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHH
Confidence 36899999999999999999999999999874 4 46655422 11111000 000
Q ss_pred c----------------ch----hhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH
Q 027392 58 H----------------SA----IGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 103 (224)
Q Consensus 58 ~----------------~~----~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~ 103 (224)
. .. ....+.++ -.|+||+||++||++++.+|++|||||||++||..
T Consensus 118 enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 197 (267)
T PRK14235 118 ENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPI 197 (267)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHH
Confidence 0 00 00111122 24789999999999999999999999999999965
Q ss_pred H-------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 104 A-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 104 ~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
. ++++.+ +.|||++||+.+++..+||+++ ++.+|+++..++.+...
T Consensus 198 ~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 198 ATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTA--FFHLGNLVEVGDTEKMF 250 (267)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEE--EEECCEEEEeCCHHHHH
Confidence 3 333433 6899999999999989999997 44567788887776654
No 181
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4.1e-26 Score=190.16 Aligned_cols=142 Identities=16% Similarity=0.216 Sum_probs=100.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCC----------C
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGD----------G 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~----------~ 54 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+... .
T Consensus 24 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~ 102 (229)
T cd03254 24 FSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ-KGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRP 102 (229)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCC
Confidence 378999999999999999999999999999887 56655422 21111000 0
Q ss_pred Ccc-cchhh---------HHhH------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 55 DIP-HSAIG---------TARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 55 ~~~-~~~~~---------~~~~------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
... ..... .... ..-.|+||+||++||++++.+|++|||||||++||... +
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l 182 (229)
T cd03254 103 NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL 182 (229)
T ss_pred CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 000 00000 0011 13357999999999999999999999999999999653 2
Q ss_pred HHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHH
Q 027392 106 RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 150 (224)
Q Consensus 106 ~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~ 150 (224)
.++. ++.|||++||+.++.. .||+++ ++.+++++..++.+.
T Consensus 183 ~~~~-~~~tii~~sh~~~~~~-~~d~i~--~l~~g~~~~~~~~~~ 223 (229)
T cd03254 183 EKLM-KGRTSIIIAHRLSTIK-NADKIL--VLDDGKIIEEGTHDE 223 (229)
T ss_pred HHhc-CCCEEEEEecCHHHHh-hCCEEE--EEeCCeEEEeCCHHH
Confidence 3343 4789999999998776 599997 445567776665544
No 182
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.94 E-value=2.9e-26 Score=211.54 Aligned_cols=144 Identities=16% Similarity=0.151 Sum_probs=104.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc--------------------CCCcccCCCC------c
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD--------------------TSNEIGGDGD------I 56 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~--------------------~~~~~~~~~~------~ 56 (224)
+-.+.+|++++|+||||||||||+|+|+|+++|+ .|.|.+.+ |...+..... +
T Consensus 24 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 102 (501)
T PRK10762 24 ALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD-AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFL 102 (501)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhh
Confidence 3468899999999999999999999999999887 56655422 1111100000 0
Q ss_pred c-----------cc-----hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH------
Q 027392 57 P-----------HS-----AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------ 104 (224)
Q Consensus 57 ~-----------~~-----~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------ 104 (224)
. .. .....+.+++ .|+||+||++||+|++.+|++|||||||++||...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 182 (501)
T PRK10762 103 GREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR 182 (501)
T ss_pred ccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHH
Confidence 0 00 0001122232 36999999999999999999999999999999643
Q ss_pred -HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHH
Q 027392 105 -CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEE 149 (224)
Q Consensus 105 -~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~ 149 (224)
+.++++.|.|||++||+.+++..+||+++ ++++|+++..++..
T Consensus 183 ~l~~l~~~~~tvii~sHd~~~~~~~~d~i~--~l~~G~i~~~~~~~ 226 (501)
T PRK10762 183 VIRELKSQGRGIVYISHRLKEIFEICDDVT--VFRDGQFIAEREVA 226 (501)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEeCCEEEEecCcC
Confidence 34555668999999999999999999997 44556777765554
No 183
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.9e-26 Score=193.41 Aligned_cols=145 Identities=15% Similarity=0.144 Sum_probs=102.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCC-----ccCCCeEEE---------------------EcCCCcccCCCCcc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQKRVVI---------------------VDTSNEIGGDGDIP 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~-----~~~~~~i~~---------------------~~~~~~~~~~~~~~ 57 (224)
-.+++|++++|+||||||||||+++|+|++. |+ .|.+.+ +.+...+... ...
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~-~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~ 119 (268)
T PRK14248 42 MDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS-EGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIY 119 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC-ceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHH
Confidence 4688999999999999999999999999864 34 455543 2221111100 000
Q ss_pred cc-------------------hhhHHhH--------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH
Q 027392 58 HS-------------------AIGTARR--------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104 (224)
Q Consensus 58 ~~-------------------~~~~~~~--------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~ 104 (224)
++ ....... ..-.|+||+||++||++++.+|++|||||||++||...
T Consensus 120 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~ 199 (268)
T PRK14248 120 NNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPIS 199 (268)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHH
Confidence 00 0000111 12247999999999999999999999999999999654
Q ss_pred -------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 -------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 -------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+.++++ +.|||++||+.+++..+||+++ ++++|+++..++.+....
T Consensus 200 ~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~~ 252 (268)
T PRK14248 200 NAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTA--FFLNGDLVEYDQTEQIFT 252 (268)
T ss_pred HHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHh
Confidence 333433 6899999999998889999997 445677888888776543
No 184
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.94 E-value=5.7e-26 Score=188.23 Aligned_cols=135 Identities=16% Similarity=0.216 Sum_probs=94.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-------------------cCCCcccCC--------C-C
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-------------------DTSNEIGGD--------G-D 55 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-------------------~~~~~~~~~--------~-~ 55 (224)
-.+++|++++|+||||||||||+++|+|+.+|+ .|.+.+. .+...+... . .
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 103 (220)
T cd03245 25 LTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT-SGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAP 103 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCC
Confidence 368999999999999999999999999999887 5655442 222111100 0 0
Q ss_pred c-cc-chhhH---------HhH------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH-------
Q 027392 56 I-PH-SAIGT---------ARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC------- 105 (224)
Q Consensus 56 ~-~~-~~~~~---------~~~------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~------- 105 (224)
. .. ..... ... ..-.|+||+||++||++++.+|++|||||||++||....
T Consensus 104 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 183 (220)
T cd03245 104 LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERL 183 (220)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 0 00 00000 011 124589999999999999999999999999999996543
Q ss_pred HHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEE
Q 027392 106 RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV 143 (224)
Q Consensus 106 ~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v 143 (224)
+++++ +.|||++||+.++. .+||+++. + .+++++
T Consensus 184 ~~~~~-~~tii~~sH~~~~~-~~~d~v~~-l-~~g~i~ 217 (220)
T cd03245 184 RQLLG-DKTLIIITHRPSLL-DLVDRIIV-M-DSGRIV 217 (220)
T ss_pred HHhcC-CCEEEEEeCCHHHH-HhCCEEEE-E-eCCeEe
Confidence 33333 38999999999876 68999974 4 445554
No 185
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5e-26 Score=195.57 Aligned_cols=146 Identities=16% Similarity=0.225 Sum_probs=104.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-----------cccCCC----------Ccccch--
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-----------EIGGDG----------DIPHSA-- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-----------~~~~~~----------~~~~~~-- 60 (224)
-.|++|++++|+|+||||||||+++|+|+++|+ .|.|.+.+..- .+++.. .+..+.
T Consensus 31 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~ 109 (280)
T PRK13633 31 LEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS-EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAF 109 (280)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHh
Confidence 368999999999999999999999999999987 56655432110 000000 000000
Q ss_pred ----------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHH
Q 027392 61 ----------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRS 107 (224)
Q Consensus 61 ----------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~ 107 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||... +.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 189 (280)
T PRK13633 110 GPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKE 189 (280)
T ss_pred hHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 000112222 36999999999999999999999999999999643 344
Q ss_pred HHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 108 IAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 108 ~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+++ .|.|||++||+++++.. ||+++ ++.+|+++..++++....
T Consensus 190 l~~~~g~tillvtH~~~~~~~-~d~v~--~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 190 LNKKYGITIILITHYMEEAVE-ADRII--VMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred HHHhcCCEEEEEecChHHHhc-CCEEE--EEECCEEEEecCHHHHhc
Confidence 544 48999999999998875 99997 445677888888776553
No 186
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.94 E-value=5.3e-26 Score=190.61 Aligned_cols=142 Identities=16% Similarity=0.204 Sum_probs=101.0
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCC----------CC
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGD----------GD 55 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~----------~~ 55 (224)
.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+... ..
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~ 103 (238)
T cd03249 25 TIPPGKTVALVGSSGCGKSTVVSLLERFYDPT-SGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPD 103 (238)
T ss_pred EecCCCEEEEEeCCCCCHHHHHHHHhccCCCC-CCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCC
Confidence 68999999999999999999999999999887 56665432 11111000 00
Q ss_pred cc-cchh------hHH---hH------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 56 IP-HSAI------GTA---RR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 56 ~~-~~~~------~~~---~~------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
.. .... ... .. ..-.|+||+||++||++++.+|++|||||||++||... ++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~ 183 (238)
T cd03249 104 ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALD 183 (238)
T ss_pred CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 00 0000 000 01 12247999999999999999999999999999999654 33
Q ss_pred HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHH
Q 027392 107 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 151 (224)
Q Consensus 107 ~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~ 151 (224)
+++ +|.|||++||+.++.. +||+++ ++++|+++..++.+..
T Consensus 184 ~~~-~g~~vi~~sh~~~~~~-~~d~v~--~l~~G~i~~~~~~~~~ 224 (238)
T cd03249 184 RAM-KGRTTIVIAHRLSTIR-NADLIA--VLQNGQVVEQGTHDEL 224 (238)
T ss_pred Hhc-CCCEEEEEeCCHHHHh-hCCEEE--EEECCEEEEeCCHHHH
Confidence 344 6889999999998887 799997 4455677776665543
No 187
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.94 E-value=4.4e-26 Score=186.96 Aligned_cols=128 Identities=14% Similarity=0.194 Sum_probs=92.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC-----------------------CcccCCCCcccch
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-----------------------NEIGGDGDIPHSA 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~-----------------------~~~~~~~~~~~~~ 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+.. ..+.......++.
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~ 97 (206)
T TIGR03608 19 LTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD-SGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENL 97 (206)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHH
Confidence 368999999999999999999999999999887 5666543211 0000000000000
Q ss_pred ------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 61 ------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 61 ------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||... +
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 177 (206)
T TIGR03608 98 DLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLL 177 (206)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHH
Confidence 001122222 36899999999999999999999999999999643 3
Q ss_pred HHHHHcCCEEEEEEeCcchHHhhcccee
Q 027392 106 RSIAERGVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 106 ~~~~~~g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
+++.+++.|+|++||+.++. .+||+++
T Consensus 178 ~~~~~~~~tii~~sh~~~~~-~~~d~i~ 204 (206)
T TIGR03608 178 LELNDEGKTIIIVTHDPEVA-KQADRVI 204 (206)
T ss_pred HHHHhcCCEEEEEeCCHHHH-hhcCEEE
Confidence 44555689999999999866 4788885
No 188
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=6.3e-26 Score=194.67 Aligned_cols=145 Identities=15% Similarity=0.190 Sum_probs=104.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCc-ccCCCCcccch---
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNE-IGGDGDIPHSA--- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~-~~~~~~~~~~~--- 60 (224)
-.+++||+++|+|+||||||||+++|+|+++|+ .|.|.+.+ +... ......+..+.
T Consensus 28 l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~ 106 (277)
T PRK13642 28 FSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF-EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFG 106 (277)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhh
Confidence 368999999999999999999999999999887 56665422 1110 00000000000
Q ss_pred ---------------hhHHhHcC----------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHH
Q 027392 61 ---------------IGTARRMQ----------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSI 108 (224)
Q Consensus 61 ---------------~~~~~~~~----------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~ 108 (224)
....+.++ -.|+||+||++||++++.+|++|||||||++||... +.++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l 186 (277)
T PRK13642 107 MENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEI 186 (277)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 00011222 237999999999999999999999999999999643 3445
Q ss_pred HHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 109 AER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 109 ~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+++ |.|||++||+.+++. .||+++ ++++|+++..++++..+
T Consensus 187 ~~~~g~tiil~sH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 187 KEKYQLTVLSITHDLDEAA-SSDRIL--VMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHhcCCEEEEEeCCHHHHH-hCCEEE--EEECCEEEEeCCHHHHh
Confidence 554 899999999999886 599997 45567788888877655
No 189
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=9.7e-26 Score=190.57 Aligned_cols=146 Identities=16% Similarity=0.146 Sum_probs=103.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccC----CCeEEEE---------------------cCCCcccCCCCccc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF----QKRVVIV---------------------DTSNEIGGDGDIPH 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~----~~~i~~~---------------------~~~~~~~~~~~~~~ 58 (224)
-.|++|++++|+||||||||||+|+|+|+++|+. .|.|.+. .+...........+
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 104 (252)
T PRK14272 25 LDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFD 104 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHH
Confidence 3688999999999999999999999999987531 3555432 22111111000000
Q ss_pred ch---------------hhH----HhHc--------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027392 59 SA---------------IGT----ARRM--------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 59 ~~---------------~~~----~~~~--------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
+. ... .+.+ .-.|+||+||++||++++.+|++|||||||++||...
T Consensus 105 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 184 (252)
T PRK14272 105 NVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAST 184 (252)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 00 000 0111 1247999999999999999999999999999999653
Q ss_pred ------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 ------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 ------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+++++ ++.|+|++||+.++...+||+++ ++.+|+++..++++...
T Consensus 185 ~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 185 ARIEDLMTDLK-KVTTIIIVTHNMHQAARVSDTTS--FFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHH
Confidence 33343 46899999999998999999997 45557788888777654
No 190
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.8e-26 Score=191.00 Aligned_cols=148 Identities=18% Similarity=0.178 Sum_probs=104.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCC--cc--CCCeEEE---------------------EcCCCcccCCCCcc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLS--DE--FQKRVVI---------------------VDTSNEIGGDGDIP 57 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~--~~--~~~~i~~---------------------~~~~~~~~~~~~~~ 57 (224)
+-.|++|++++|+||||||||||+++|+|+++ |+ ..|.|.+ +.+...+.....+.
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 103 (252)
T PRK14256 24 SMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIY 103 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHH
Confidence 34689999999999999999999999999985 31 1354443 22221111100000
Q ss_pred c--------------c-----hhhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH
Q 027392 58 H--------------S-----AIGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104 (224)
Q Consensus 58 ~--------------~-----~~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~ 104 (224)
+ . .....+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~ 183 (252)
T PRK14256 104 DNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPIS 183 (252)
T ss_pred HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 0 0 000111222 247899999999999999999999999999999653
Q ss_pred -------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 -------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 -------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
++++.+ +.|||++||+.+++..+||+++ ++.+|+++..++.+....
T Consensus 184 ~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14256 184 TLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTA--FFYMGDLVECGETKKIFT 236 (252)
T ss_pred HHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEE--EEECCEEEEeCCHHHHHh
Confidence 344443 5899999999998889999997 445677888888776554
No 191
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=9.4e-26 Score=190.72 Aligned_cols=146 Identities=16% Similarity=0.138 Sum_probs=104.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccC----CCeEEE---------------------EcCCCcccCCCCccc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF----QKRVVI---------------------VDTSNEIGGDGDIPH 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~----~~~i~~---------------------~~~~~~~~~~~~~~~ 58 (224)
-.|.+|++++|+||||||||||+++|+|+++|+. .|.|.+ +.+...+... ....
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~e 103 (251)
T PRK14249 25 MDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFD 103 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHH
Confidence 3688999999999999999999999999998752 255443 2222111100 0000
Q ss_pred ------------------chh-hHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027392 59 ------------------SAI-GTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 59 ------------------~~~-~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
... ...+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 104 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 183 (251)
T PRK14249 104 NVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVST 183 (251)
T ss_pred HHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 000 0011112 147999999999999999999999999999999543
Q ss_pred ------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 ------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 ------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+.++ .++.|||++||+.++...+||+++ ++.+|+++..+++.....
T Consensus 184 ~~l~~~l~~~-~~~~tilivsh~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14249 184 MRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTG--FLLTGDLVEYGRTGEIFS 235 (251)
T ss_pred HHHHHHHHHH-hcCCEEEEEeCCHHHHHhhCCEEE--EEeCCeEEEeCCHHHHHh
Confidence 3344 357899999999999999999997 445677788877776543
No 192
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1e-25 Score=190.46 Aligned_cols=146 Identities=14% Similarity=0.087 Sum_probs=104.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCc-----cCCCeEEEE---------------------cCCCcccCCCCc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKRVVIV---------------------DTSNEIGGDGDI 56 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~-----~~~~~i~~~---------------------~~~~~~~~~~~~ 56 (224)
+-.+++|++++|+|+||||||||+++|+|+.+| + .|.|.+. .+...+.. ...
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~-~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 101 (251)
T PRK14270 24 NLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKI-EGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSI 101 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCC-ccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcH
Confidence 346899999999999999999999999999864 3 4555442 22111110 000
Q ss_pred ccch-------------------hhHHhHc--------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH
Q 027392 57 PHSA-------------------IGTARRM--------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 103 (224)
Q Consensus 57 ~~~~-------------------~~~~~~~--------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~ 103 (224)
..+. ....+.+ .-.|+||+||++||++++.+|++|||||||++||..
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 181 (251)
T PRK14270 102 YDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPI 181 (251)
T ss_pred HHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 0000 0011122 223699999999999999999999999999999965
Q ss_pred H-------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 104 A-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 104 ~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
. ++++.+ +.|+|++||+.+++..+||+++ ++++|+++..++++....
T Consensus 182 ~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14270 182 STLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTA--FFLMGDLIEFNKTEKIFL 235 (251)
T ss_pred HHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEE--EEECCeEEEeCCHHHHhc
Confidence 3 334444 5899999999998889999997 456677888888876653
No 193
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.4e-26 Score=210.58 Aligned_cols=145 Identities=16% Similarity=0.184 Sum_probs=104.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCc--cCCCeEEEE--------------------cCCCcccCCCC-----
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSD--EFQKRVVIV--------------------DTSNEIGGDGD----- 55 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~--~~~~~i~~~--------------------~~~~~~~~~~~----- 55 (224)
+-.+++|++++|+||||||||||+|+|+|+++| + .|.|.+. .|...+.....
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 103 (506)
T PRK13549 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY-EGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENI 103 (506)
T ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCC-CeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHh
Confidence 447899999999999999999999999999986 4 4655442 22111110000
Q ss_pred -c----------cc-c----hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-----
Q 027392 56 -I----------PH-S----AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----- 104 (224)
Q Consensus 56 -~----------~~-~----~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~----- 104 (224)
+ .. . .....+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 183 (506)
T PRK13549 104 FLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLL 183 (506)
T ss_pred hhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 0 00 0 0011222332 36999999999999999999999999999999543
Q ss_pred --HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHH
Q 027392 105 --CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 150 (224)
Q Consensus 105 --~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~ 150 (224)
+.+++++|.|||++||+.+++..+||+++ ++++|+++..++++.
T Consensus 184 ~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 184 DIIRDLKAHGIACIYISHKLNEVKAISDTIC--VIRDGRHIGTRPAAG 229 (506)
T ss_pred HHHHHHHHCCCEEEEEeCcHHHHHHhcCEEE--EEECCEEeeeccccc
Confidence 44555668999999999999999999997 445677777766543
No 194
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.94 E-value=6.2e-26 Score=206.76 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=116.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc---CCCeEEEEcCC--------------CcccCCCCc------c--
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE---FQKRVVIVDTS--------------NEIGGDGDI------P-- 57 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~---~~~~i~~~~~~--------------~~~~~~~~~------~-- 57 (224)
+-.|.+||+++|+|.+||||||+.++|.|++++. .+|+|.+..++ ..+++...- |
T Consensus 29 sf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~ 108 (539)
T COG1123 29 SFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVM 108 (539)
T ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchh
Confidence 4468999999999999999999999999999876 24666654321 001000000 0
Q ss_pred ---cch-------------------hhHHhHcCC------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhH-
Q 027392 58 ---HSA-------------------IGTARRMQV------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA- 102 (224)
Q Consensus 58 ---~~~-------------------~~~~~~~~~------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~- 102 (224)
.+. ....+.+++ .||||+||+.||+|++++|++||+||||++||+
T Consensus 109 tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt 188 (539)
T COG1123 109 TIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVT 188 (539)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHH
Confidence 000 001122222 379999999999999999999999999999994
Q ss_pred ------HHHHHHH-HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHH
Q 027392 103 ------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSI 159 (224)
Q Consensus 103 ------~~~~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~ 159 (224)
+.++++. +.|.++|++|||+..+..+||+++ ++.+|++|+.|+++.++..+....
T Consensus 189 ~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~--Vm~~G~iVE~G~~~~i~~~p~hpY 250 (539)
T COG1123 189 TQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVV--VMYKGEIVETGPTEEILSNPQHPY 250 (539)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEE--EEECCEEEEecCHHHHHhccCCcc
Confidence 3455555 569999999999999999999997 677789999999999988775443
No 195
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.6e-26 Score=186.06 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=94.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCC---ccCCCeEEEEcCCC---------cccCC----CCcc-----cchhh
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLS---DEFQKRVVIVDTSN---------EIGGD----GDIP-----HSAIG 62 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~---~~~~~~i~~~~~~~---------~~~~~----~~~~-----~~~~~ 62 (224)
-.+++|++++|+||||||||||+++|+|+++ |+ .|.+.+.+... .+++. ..++ ++...
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~-~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 106 (202)
T cd03233 28 GVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV-EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDF 106 (202)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc-ceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhh
Confidence 3689999999999999999999999999998 55 56665432110 01100 0011 01100
Q ss_pred -----HHhHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHc-CCEEEEE-EeCcchHHhh
Q 027392 63 -----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAER-GVMLIGT-AHGEWLENII 128 (224)
Q Consensus 63 -----~~~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~-g~tvi~~-tH~~~~~~~~ 128 (224)
......-.|+||+||++||++++.+|++|||||||++||... +.++.++ +.|+|++ +|+.+....+
T Consensus 107 ~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~ 186 (202)
T cd03233 107 ALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDL 186 (202)
T ss_pred hhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHh
Confidence 011223357999999999999999999999999999999543 3444444 5665554 5666778889
Q ss_pred ccceeeeccCCeeEEE
Q 027392 129 KNPILSDLIGGVDTVT 144 (224)
Q Consensus 129 ~d~v~~~l~~~~~~v~ 144 (224)
||+++ ++.+|+++.
T Consensus 187 ~d~i~--~l~~G~i~~ 200 (202)
T cd03233 187 FDKVL--VLYEGRQIY 200 (202)
T ss_pred CCeEE--EEECCEEEe
Confidence 99997 444566554
No 196
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8e-26 Score=213.51 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=109.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc----------------------CCCc--ccCCCCccc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD----------------------TSNE--IGGDGDIPH 58 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~----------------------~~~~--~~~~~~~~~ 58 (224)
+-.|++|++++|+|+||||||||+|+|+|+++|+ .|.|.+.+ |... +.....+..
T Consensus 344 s~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~-~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~ 422 (623)
T PRK10261 344 SFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ-GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGD 422 (623)
T ss_pred EeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHH
Confidence 3468899999999999999999999999999887 56665432 2110 000000000
Q ss_pred c-------------------hhhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-----
Q 027392 59 S-------------------AIGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH----- 103 (224)
Q Consensus 59 ~-------------------~~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~----- 103 (224)
+ .....+.+++ .|+||+||++||+||+.+|++|||||||++||..
T Consensus 423 ~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i 502 (623)
T PRK10261 423 SIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQI 502 (623)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 0 0001122333 3699999999999999999999999999999954
Q ss_pred --HHHHHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHH
Q 027392 104 --ACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 154 (224)
Q Consensus 104 --~~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~ 154 (224)
.+++++++ |.|||++||+++++..+||+++ ++.+|+++..++++.++..
T Consensus 503 ~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~--vl~~G~iv~~g~~~~i~~~ 554 (623)
T PRK10261 503 INLLLDLQRDFGIAYLFISHDMAVVERISHRVA--VMYLGQIVEIGPRRAVFEN 554 (623)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEecCHHHHhcC
Confidence 34455544 8999999999999999999997 4566788888888876643
No 197
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.4e-26 Score=193.66 Aligned_cols=148 Identities=18% Similarity=0.172 Sum_probs=104.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc----CCCeEEE---------------------EcCCCcccCCCCcc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVI---------------------VDTSNEIGGDGDIP 57 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~----~~~~i~~---------------------~~~~~~~~~~~~~~ 57 (224)
+-.|++||+++|+||||||||||+++|+|++.+. ..|.+.+ +.+...+... .+.
T Consensus 40 s~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~ 118 (274)
T PRK14265 40 HLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIY 118 (274)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHH
Confidence 3468999999999999999999999999998531 1355443 2222111100 000
Q ss_pred cch-----------------hhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH--
Q 027392 58 HSA-----------------IGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-- 104 (224)
Q Consensus 58 ~~~-----------------~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-- 104 (224)
.+. ....+.++ -.|+||+||++||+|++.+|++|||||||++||...
T Consensus 119 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~ 198 (274)
T PRK14265 119 ENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTR 198 (274)
T ss_pred HHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence 000 00011111 137999999999999999999999999999999653
Q ss_pred -----HHHHHHcCCEEEEEEeCcchHHhhccceeeecc--------CCeeEEEcCCHHHHHH
Q 027392 105 -----CRSIAERGVMLIGTAHGEWLENIIKNPILSDLI--------GGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 -----~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~--------~~~~~v~~~~~~~~~~ 153 (224)
+.++++ +.|||++||+.++...+||+++. |. ..|+++..+++.....
T Consensus 199 ~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~-l~~~~~~~~~~~G~~~~~g~~~~~~~ 258 (274)
T PRK14265 199 QVEELCLELKE-QYTIIMVTHNMQQASRVADWTAF-FNTEIDEYGKRRGKLVEFSPTEQMFG 258 (274)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEE-EecccccccccCceEEEeCCHHHHHh
Confidence 334433 68999999999999999999974 53 2678888888877653
No 198
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.2e-26 Score=189.66 Aligned_cols=143 Identities=16% Similarity=0.178 Sum_probs=101.2
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCC----------CC
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGD----------GD 55 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~----------~~ 55 (224)
.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+... ..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~ 102 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVD-SGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPG 102 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCC-CCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCC
Confidence 58899999999999999999999999999887 56665422 11111000 00
Q ss_pred cccch-hh---------HHhH------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 56 IPHSA-IG---------TARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 56 ~~~~~-~~---------~~~~------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
..... .. ..+. ..-.|+||+||++||++++.+|+++||||||++||... +.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~ 182 (234)
T cd03251 103 ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALE 182 (234)
T ss_pred CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 00000 00 0011 11247899999999999999999999999999999653 33
Q ss_pred HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 107 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 107 ~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++. ++.|||++||+.++... ||+++ ++++|+++..++.+...
T Consensus 183 ~~~-~~~tii~~sh~~~~~~~-~d~v~--~l~~G~i~~~~~~~~~~ 224 (234)
T cd03251 183 RLM-KNRTTFVIAHRLSTIEN-ADRIV--VLEDGKIVERGTHEELL 224 (234)
T ss_pred Hhc-CCCEEEEEecCHHHHhh-CCEEE--EecCCeEeeeCCHHHHH
Confidence 333 47899999999988865 99997 45556777777665543
No 199
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.5e-26 Score=208.70 Aligned_cols=144 Identities=11% Similarity=0.116 Sum_probs=104.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE--------------------cCCCcccCCCC--------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV--------------------DTSNEIGGDGD-------- 55 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~--------------------~~~~~~~~~~~-------- 55 (224)
-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+. .|.........
T Consensus 19 ~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 97 (491)
T PRK10982 19 LKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD-SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLG 97 (491)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcc
Confidence 368999999999999999999999999999887 5655442 22111100000
Q ss_pred -c-------ccc-----hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 56 -I-------PHS-----AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 56 -~-------~~~-----~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
. ... .....+.+++ .|+||+||++||++++.+|++|||||||++||... +
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 177 (491)
T PRK10982 98 RYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTII 177 (491)
T ss_pred cccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 0 000 0001122222 37999999999999999999999999999999543 4
Q ss_pred HHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHH
Q 027392 106 RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 150 (224)
Q Consensus 106 ~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~ 150 (224)
.++++.|.|||++||+.+++..+||+++ ++.+|+++..++++.
T Consensus 178 ~~l~~~g~tvii~tH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 178 RKLKERGCGIVYISHKMEEIFQLCDEIT--ILRDGQWIATQPLAG 220 (491)
T ss_pred HHHHhCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEeecChhh
Confidence 4555678999999999999999999997 455677777766554
No 200
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=190.91 Aligned_cols=145 Identities=11% Similarity=0.127 Sum_probs=103.7
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCC--cc--CCCeEEEE---------------------cCCCcccCCCCccc-
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLS--DE--FQKRVVIV---------------------DTSNEIGGDGDIPH- 58 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~--~~--~~~~i~~~---------------------~~~~~~~~~~~~~~- 58 (224)
.|++||+++|+||||||||||+++|+|++. |+ ..|.+.+. .+...+... ...+
T Consensus 34 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~en 112 (259)
T PRK14274 34 SIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDN 112 (259)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHH
Confidence 689999999999999999999999999986 31 14555432 221111000 0000
Q ss_pred -------------c-----hhhHHhHcCC--------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH--
Q 027392 59 -------------S-----AIGTARRMQV--------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-- 104 (224)
Q Consensus 59 -------------~-----~~~~~~~~~~--------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-- 104 (224)
. .....+.+++ .|+||+||++||++++.+|+++||||||++||...
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~ 192 (259)
T PRK14274 113 VAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTR 192 (259)
T ss_pred HHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 0 0000112222 36899999999999999999999999999999643
Q ss_pred -----HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 -----CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 -----~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+.++.+ +.|+|++||+.+++..+||+++ ++.+|+++..++++....
T Consensus 193 ~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 243 (259)
T PRK14274 193 KIEELILKLKE-KYTIVIVTHNMQQAARVSDQTA--FFYMGELVECNDTNKMFS 243 (259)
T ss_pred HHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEE--EEECCEEEEECCHHHHhh
Confidence 334433 6899999999998889999997 456678888888877653
No 201
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.93 E-value=9.7e-26 Score=187.84 Aligned_cols=138 Identities=19% Similarity=0.232 Sum_probs=97.5
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCC---ccCCCeEEE----------------EcCCCcccCCCCccc-------
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLS---DEFQKRVVI----------------VDTSNEIGGDGDIPH------- 58 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~---~~~~~~i~~----------------~~~~~~~~~~~~~~~------- 58 (224)
.+++||+++|+||||||||||+++|+|+++ |+ .|.+.+ +.+...+.......+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~-~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 107 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT-SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAI 107 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC-ceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHH
Confidence 689999999999999999999999999998 66 455543 222211111000000
Q ss_pred ---------c----hh-h-HHhHc----------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 59 ---------S----AI-G-TARRM----------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 59 ---------~----~~-~-~~~~~----------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
. .. . ..+.+ .-.|+||+||+++|++++.+|++|||||||++||... +.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~ 187 (226)
T cd03234 108 LRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS 187 (226)
T ss_pred hhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 0 00 0 11111 2247999999999999999999999999999999543 34
Q ss_pred HHHHcCCEEEEEEeCc-chHHhhccceeeeccCCeeEEEc
Q 027392 107 SIAERGVMLIGTAHGE-WLENIIKNPILSDLIGGVDTVTL 145 (224)
Q Consensus 107 ~~~~~g~tvi~~tH~~-~~~~~~~d~v~~~l~~~~~~v~~ 145 (224)
++.+++.|+|++||+. +++..+||+++ ++.+|+++..
T Consensus 188 ~~~~~~~tiii~sh~~~~~~~~~~d~i~--~l~~G~i~~~ 225 (226)
T cd03234 188 QLARRNRIVILTIHQPRSDLFRLFDRIL--LLSSGEIVYS 225 (226)
T ss_pred HHHHCCCEEEEEecCCCHHHHHhCCEEE--EEeCCEEEec
Confidence 4555688999999998 57888999997 3444665543
No 202
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.93 E-value=7.8e-26 Score=191.16 Aligned_cols=146 Identities=13% Similarity=0.157 Sum_probs=103.4
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCCCC--------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGDGD-------- 55 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~~~-------- 55 (224)
+-.+++|++++|+||||||||||+++|+|++++ .|.+.+.+ +.........
T Consensus 16 sl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~--~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~ 93 (248)
T PRK03695 16 SAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG--SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLH 93 (248)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhc
Confidence 346899999999999999999999999999853 46555422 1110000000
Q ss_pred ----cccc-----hhhHHhHcCC----------CCccHHHHHHHHHHHhc-------CCCEEEEeCCCChHhHHH-----
Q 027392 56 ----IPHS-----AIGTARRMQV----------PEPSLQHKVMIEAVENH-------MPEVIIVDEIGTEAEAHA----- 104 (224)
Q Consensus 56 ----~~~~-----~~~~~~~~~~----------~~~g~~qr~~la~al~~-------~p~llilDEp~~~lD~~~----- 104 (224)
.... .....+.+++ .|+||+||++||++++. +|++|||||||++||...
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~ 173 (248)
T PRK03695 94 QPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALD 173 (248)
T ss_pred CccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHH
Confidence 0000 0001112222 37999999999999997 679999999999999643
Q ss_pred --HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 --CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 --~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++++++++.|||++||+.++...+||+++ ++.+|+++..++.+...
T Consensus 174 ~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 174 RLLSELCQQGIAVVMSSHDLNHTLRHADRVW--LLKQGKLLASGRRDEVL 221 (248)
T ss_pred HHHHHHHhCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEECCHHHHh
Confidence 34455568999999999998999999997 45667788877766543
No 203
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=190.20 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=102.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCc--c--CCCeEEEE---------------------cCCCcccCCCCccc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSD--E--FQKRVVIV---------------------DTSNEIGGDGDIPH 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~--~--~~~~i~~~---------------------~~~~~~~~~~~~~~ 58 (224)
-.+++||+++|+||||||||||+++|+|++++ . ..|.|.+. .+...+.. .....
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ 102 (250)
T PRK14240 24 LDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYD 102 (250)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHH
Confidence 36889999999999999999999999998752 1 14555432 22111100 00000
Q ss_pred ch---------------h----hHHhHc--------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027392 59 SA---------------I----GTARRM--------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 59 ~~---------------~----~~~~~~--------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
+. . ...+.+ .-.|+||+||++||++++.+|++|||||||++||...
T Consensus 103 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 182 (250)
T PRK14240 103 NVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPIST 182 (250)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 00 0 000111 2247999999999999999999999999999999653
Q ss_pred ------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 ------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 ------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.++. ++.|||++||+.+.+..+||+++ ++.+|+++..++.+...
T Consensus 183 ~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 183 LKIEELIQELK-KDYTIVIVTHNMQQASRISDKTA--FFLNGEIVEFGDTVDLF 233 (250)
T ss_pred HHHHHHHHHHh-cCCeEEEEEeCHHHHHhhCCEEE--EEECCEEEEeCCHHHHH
Confidence 33443 47899999999998889999997 44557788887776654
No 204
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=191.30 Aligned_cols=145 Identities=12% Similarity=0.124 Sum_probs=103.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCC-----ccCCCeEEEE---------------------cCCCcccCCCCcc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQKRVVIV---------------------DTSNEIGGDGDIP 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~-----~~~~~~i~~~---------------------~~~~~~~~~~~~~ 57 (224)
-.|++|++++|+||||||||||+++|+|++. |+ .|.|.+. .+...+.. ....
T Consensus 34 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~-~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 111 (260)
T PRK10744 34 LDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRA-EGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIY 111 (260)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCc-ceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHH
Confidence 3689999999999999999999999999986 23 4555432 22111110 0000
Q ss_pred cc-------------------hhhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH
Q 027392 58 HS-------------------AIGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104 (224)
Q Consensus 58 ~~-------------------~~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~ 104 (224)
.+ .....+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 112 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~ 191 (260)
T PRK10744 112 DNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPIS 191 (260)
T ss_pred HHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHH
Confidence 00 000111222 247999999999999999999999999999999653
Q ss_pred -------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 -------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 -------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+.+++ ++.|||++||+.++...+||+++ ++++|+++..++.+....
T Consensus 192 ~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 244 (260)
T PRK10744 192 TGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTA--FMYLGELIEFGNTDTIFT 244 (260)
T ss_pred HHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHh
Confidence 33443 46899999999998889999997 455677888887776543
No 205
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=190.06 Aligned_cols=144 Identities=14% Similarity=0.147 Sum_probs=102.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCC--c---cCCCeEEE---------------------EcCCCcccCCCCcc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLS--D---EFQKRVVI---------------------VDTSNEIGGDGDIP 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~--~---~~~~~i~~---------------------~~~~~~~~~~~~~~ 57 (224)
-.|.+|++++|+|+||||||||+++|+|+.. | + .|.|.+ +.+...+... ...
T Consensus 26 ~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~-~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~ 103 (251)
T PRK14244 26 LDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKV-KGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIY 103 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCc-ceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHH
Confidence 3689999999999999999999999999985 2 3 455543 2222111100 000
Q ss_pred cc--------------------hhhHHhHcCC--------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH
Q 027392 58 HS--------------------AIGTARRMQV--------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 103 (224)
Q Consensus 58 ~~--------------------~~~~~~~~~~--------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~ 103 (224)
.+ .....+.+++ .|+||+||++||++++.+|++|||||||++||..
T Consensus 104 ~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~ 183 (251)
T PRK14244 104 DNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPV 183 (251)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 00 0011122222 3689999999999999999999999999999964
Q ss_pred H-------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 104 A-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 104 ~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
. +.++. ++.|||++||+.++...+||+++ ++.+|+++..++.....
T Consensus 184 ~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 184 ATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVA--FFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEE--EEECCEEEEeCCHHHHh
Confidence 3 33443 47999999999998889999997 44557788777766544
No 206
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.9e-25 Score=189.70 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=104.7
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc----CCCeEEEEc---------------------CCCcccCCCCcc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVIVD---------------------TSNEIGGDGDIP 57 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~----~~~~i~~~~---------------------~~~~~~~~~~~~ 57 (224)
+-.+++|++++|+||||||||||+++|+|++.|. ..|.|.+.+ +...+.....+.
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 103 (258)
T PRK14241 24 NLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIR 103 (258)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHH
Confidence 3468999999999999999999999999998641 146665422 111100000000
Q ss_pred --------------cch-----hhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH
Q 027392 58 --------------HSA-----IGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104 (224)
Q Consensus 58 --------------~~~-----~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~ 104 (224)
... ....+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 104 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 183 (258)
T PRK14241 104 DNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPIS 183 (258)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 000 00011222 247999999999999999999999999999999643
Q ss_pred -------HHHHHHcCCEEEEEEeCcchHHhhccceeeecc-----CCeeEEEcCCHHHHHH
Q 027392 105 -------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLI-----GGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 -------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~-----~~~~~v~~~~~~~~~~ 153 (224)
+.+++ ++.|||++||+.++...+||+++. +. +.|+++..++++....
T Consensus 184 ~~~l~~~l~~~~-~~~tviivsH~~~~~~~~~d~i~~-l~~~~~~~~g~i~~~~~~~~~~~ 242 (258)
T PRK14241 184 TLAIEDLINELK-QDYTIVIVTHNMQQAARVSDQTAF-FNLEATGKPGRLVEIDDTEKIFS 242 (258)
T ss_pred HHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEE-EecccCCCCceEEecCCHHHHHh
Confidence 33443 468999999999988899999974 54 3578888888776543
No 207
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.3e-25 Score=189.69 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=102.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCc-----cCCCeEEEE---------------------cCCCcccCCCCcc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKRVVIV---------------------DTSNEIGGDGDIP 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~-----~~~~~i~~~---------------------~~~~~~~~~~~~~ 57 (224)
-.+++|++++|+||||||||||+++|+|++++ + .|.+.+. .+...+.. ....
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~-~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 101 (250)
T PRK14262 24 MKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRV-EGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIY 101 (250)
T ss_pred EeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCc-ceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHH
Confidence 46899999999999999999999999999873 3 4555432 21111100 0000
Q ss_pred cc--------------h-----hhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH
Q 027392 58 HS--------------A-----IGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104 (224)
Q Consensus 58 ~~--------------~-----~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~ 104 (224)
.+ . ....+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 102 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~ 181 (250)
T PRK14262 102 DNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181 (250)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHH
Confidence 00 0 00011111 236999999999999999999999999999999653
Q ss_pred -------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 -------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 -------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.++. ++.|+|++||+.+.+..+||+++ ++.+|+++..++++...
T Consensus 182 ~~~l~~~l~~~~-~~~tili~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 182 TQRIEKLLEELS-ENYTIVIVTHNIGQAIRIADYIA--FMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHHHHh-cCcEEEEEeCCHHHHHHhCCEEE--EEECCEEEEecCHHHHH
Confidence 33333 36899999999998888999997 45567788888776654
No 208
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.2e-26 Score=210.47 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=105.9
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC--------------------CCc---ccCCCCcccc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--------------------SNE---IGGDGDIPHS 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~--------------------~~~---~~~~~~~~~~ 59 (224)
+-.|++|++++|+||||||||||+|+|+|+++|+ .|.|.+.+. ... ........++
T Consensus 273 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~ 351 (501)
T PRK11288 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT-AGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADN 351 (501)
T ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC-CceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHH
Confidence 3478999999999999999999999999999887 576665321 100 0000000000
Q ss_pred ------------------------hhhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH
Q 027392 60 ------------------------AIGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104 (224)
Q Consensus 60 ------------------------~~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~ 104 (224)
.......+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 352 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~ 431 (501)
T PRK11288 352 INISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGA 431 (501)
T ss_pred hccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhH
Confidence 0001122333 36999999999999999999999999999999543
Q ss_pred -------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHH
Q 027392 105 -------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 150 (224)
Q Consensus 105 -------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~ 150 (224)
+.++++.|.|||++||+++++..+||+++ ++.+|+++..+++++
T Consensus 432 ~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~--~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 432 KHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIV--VMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEE--EEECCEEEEEEcccc
Confidence 44556778999999999999999999997 445567777766654
No 209
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.4e-25 Score=190.56 Aligned_cols=149 Identities=13% Similarity=0.133 Sum_probs=104.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCC-----CeEE-------------------EEcCCCcccCCCC----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVV-------------------IVDTSNEIGGDGD---- 55 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~-----~~i~-------------------~~~~~~~~~~~~~---- 55 (224)
-.+.+|++++|+||||||||||+++|+|+++|+.+ |.+. |+.+...+.....
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~n 110 (257)
T PRK14246 31 IKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDN 110 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHH
Confidence 36889999999999999999999999999987631 2222 2222111110000
Q ss_pred ---------c-cc-ch----hhHHhHcCC--------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH--
Q 027392 56 ---------I-PH-SA----IGTARRMQV--------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-- 104 (224)
Q Consensus 56 ---------~-~~-~~----~~~~~~~~~--------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-- 104 (224)
. .. .. ....+.+++ .|+||+||++||++++.+|+++||||||++||...
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~ 190 (257)
T PRK14246 111 IAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190 (257)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHH
Confidence 0 00 00 001122222 36899999999999999999999999999999653
Q ss_pred -----HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHh
Q 027392 105 -----CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 155 (224)
Q Consensus 105 -----~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~ 155 (224)
+.++. ++.|||++||+.+++..+|++++ .+.+++++..++.+.....+
T Consensus 191 ~l~~~l~~~~-~~~tiilvsh~~~~~~~~~d~v~--~l~~g~i~~~g~~~~~~~~~ 243 (257)
T PRK14246 191 AIEKLITELK-NEIAIVIVSHNPQQVARVADYVA--FLYNGELVEWGSSNEIFTSP 243 (257)
T ss_pred HHHHHHHHHh-cCcEEEEEECCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhCC
Confidence 33343 36899999999998989999997 44557888888887765443
No 210
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.3e-25 Score=189.67 Aligned_cols=146 Identities=14% Similarity=0.156 Sum_probs=103.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhc---CCcc-CCCeEEEE---------------------cCCCcccCCCCccc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARV---LSDE-FQKRVVIV---------------------DTSNEIGGDGDIPH 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~---l~~~-~~~~i~~~---------------------~~~~~~~~~~~~~~ 58 (224)
-.+++|++++|+||||||||||+++|+|+ .++. ..|.+.+. .+...+.. ....+
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~ 102 (250)
T PRK14245 24 MEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFE 102 (250)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHH
Confidence 36899999999999999999999999997 3431 13554432 22211110 00000
Q ss_pred c-------------------hhhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027392 59 S-------------------AIGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 59 ~-------------------~~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
+ .....+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 103 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 182 (250)
T PRK14245 103 NVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPIST 182 (250)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 0 000112222 247999999999999999999999999999999643
Q ss_pred ------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 ------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 ------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
++++. ++.|||++||+.++...+||+++ ++++|+++..++++....
T Consensus 183 ~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~--~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 183 AKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTA--FFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEE--EEECCEEEEECCHHHHhc
Confidence 33443 47899999999998889999997 445677888888876653
No 211
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.6e-25 Score=189.17 Aligned_cols=146 Identities=15% Similarity=0.122 Sum_probs=102.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCC--cc--CCCeEEEE---------------------cCCCcccCCCCccc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLS--DE--FQKRVVIV---------------------DTSNEIGGDGDIPH 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~--~~--~~~~i~~~---------------------~~~~~~~~~~~~~~ 58 (224)
-.+++||+++|+||||||||||+++|+|+.. |+ ..|.|.+. .+...+.. .....
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 104 (252)
T PRK14239 26 LDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYE 104 (252)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHH
Confidence 4688999999999999999999999999853 42 14555432 22211110 00000
Q ss_pred ch--------------h-h----HHhHc--------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027392 59 SA--------------I-G----TARRM--------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 59 ~~--------------~-~----~~~~~--------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
+. . . ..+.+ .-.|+||+||++||++++.+|++|||||||++||...
T Consensus 105 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 184 (252)
T PRK14239 105 NVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISA 184 (252)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 00 0 0 01112 1247999999999999999999999999999999653
Q ss_pred ------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 ------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 ------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
++++. ++.|||++||+.++...+||+++ ++.+|+++..++......
T Consensus 185 ~~l~~~l~~~~-~~~tii~~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 185 GKIEETLLGLK-DDYTMLLVTRSMQQASRISDRTG--FFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HHHHHHHHHHh-hCCeEEEEECCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHh
Confidence 33343 36899999999998889999997 455677888888776553
No 212
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.93 E-value=1.3e-25 Score=189.79 Aligned_cols=143 Identities=15% Similarity=0.119 Sum_probs=100.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhc--CCccCCCeEEEEc--------------------CCCcccCC--------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARV--LSDEFQKRVVIVD--------------------TSNEIGGD-------- 53 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~--l~~~~~~~i~~~~--------------------~~~~~~~~-------- 53 (224)
-.+++|++++|+|+||||||||+++|+|+ ++|+ .|.+.+.+ +.......
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~ 106 (252)
T CHL00131 28 LSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL-EGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLR 106 (252)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC-CceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHH
Confidence 36899999999999999999999999998 4555 45554321 11100000
Q ss_pred --CC----c---cc----c----hhhHHhH-----------cC-CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH
Q 027392 54 --GD----I---PH----S----AIGTARR-----------MQ-VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104 (224)
Q Consensus 54 --~~----~---~~----~----~~~~~~~-----------~~-~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~ 104 (224)
.. . .. . .....+. .. -.|+||+||++||++++.+|++|||||||++||...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~ 186 (252)
T CHL00131 107 LAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDA 186 (252)
T ss_pred HhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 00 0 00 0 0000111 11 257999999999999999999999999999999543
Q ss_pred -------HHHHHHcCCEEEEEEeCcchHHhh-ccceeeeccCCeeEEEcCCHH
Q 027392 105 -------CRSIAERGVMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEE 149 (224)
Q Consensus 105 -------~~~~~~~g~tvi~~tH~~~~~~~~-~d~v~~~l~~~~~~v~~~~~~ 149 (224)
+.+++++|.|||++||+.++...+ ||+++ ++.+|+++..++++
T Consensus 187 ~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~--~l~~G~i~~~~~~~ 237 (252)
T CHL00131 187 LKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVH--VMQNGKIIKTGDAE 237 (252)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEE--EEeCCEEEEecChh
Confidence 344555689999999999888776 89987 45667788877766
No 213
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.93 E-value=9e-26 Score=187.63 Aligned_cols=129 Identities=19% Similarity=0.295 Sum_probs=94.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC---C---------------cccCCC---C-ccc---
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS---N---------------EIGGDG---D-IPH--- 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~---~---------------~~~~~~---~-~~~--- 58 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.... . .+++.. . ++.
T Consensus 29 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 107 (224)
T TIGR02324 29 LTVNAGECVALSGPSGAGKSTLLKSLYANYLPD-SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSA 107 (224)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccH
Confidence 367899999999999999999999999999887 5776653110 0 011100 0 000
Q ss_pred --ch------------------hhHHhHcC-----------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---
Q 027392 59 --SA------------------IGTARRMQ-----------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 104 (224)
Q Consensus 59 --~~------------------~~~~~~~~-----------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~--- 104 (224)
.. ....+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 108 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~ 187 (224)
T TIGR02324 108 LEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQV 187 (224)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 00 00011121 136999999999999999999999999999999643
Q ss_pred ----HHHHHHcCCEEEEEEeCcchHHhhcccee
Q 027392 105 ----CRSIAERGVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 105 ----~~~~~~~g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
+++++++|.|+|++||+.+++..+||+++
T Consensus 188 l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~ 220 (224)
T TIGR02324 188 VVELIAEAKARGAALIGIFHDEEVRELVADRVM 220 (224)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeE
Confidence 34455568999999999998888999985
No 214
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=9.2e-26 Score=186.66 Aligned_cols=131 Identities=16% Similarity=0.193 Sum_probs=95.7
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc----------------CCCcccCCCCcccch------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD----------------TSNEIGGDGDIPHSA------ 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~----------------~~~~~~~~~~~~~~~------ 60 (224)
+-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+.......++.
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 109 (214)
T PRK13543 31 DFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE-SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGL 109 (214)
T ss_pred eEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-CeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHh
Confidence 3468999999999999999999999999999887 56654432 111111000000000
Q ss_pred ---------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCE
Q 027392 61 ---------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVM 114 (224)
Q Consensus 61 ---------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~t 114 (224)
......+++ .|+||+||+++|++++.+|++|||||||++||... +.++++++.|
T Consensus 110 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (214)
T PRK13543 110 HGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGA 189 (214)
T ss_pred cCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 011122332 36999999999999999999999999999999653 3344566899
Q ss_pred EEEEEeCcchHHhhccceee
Q 027392 115 LIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 115 vi~~tH~~~~~~~~~d~v~~ 134 (224)
+|++||+.++...+|++++.
T Consensus 190 iii~sH~~~~~~~~~~~i~~ 209 (214)
T PRK13543 190 ALVTTHGAYAAPPVRTRMLT 209 (214)
T ss_pred EEEEecChhhhhhhcceEEE
Confidence 99999999999999999863
No 215
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.3e-25 Score=192.06 Aligned_cols=146 Identities=14% Similarity=0.131 Sum_probs=104.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCC-----ccCCCeEEEE---------------------cCCCcccCCCCc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQKRVVIV---------------------DTSNEIGGDGDI 56 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~-----~~~~~~i~~~---------------------~~~~~~~~~~~~ 56 (224)
+-.|++|++++|+|+||||||||+++|+|+++ |+ .|.|.+. .+...+... ..
T Consensus 44 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv 121 (271)
T PRK14238 44 NLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKT-TGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SI 121 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCC-ceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cH
Confidence 34789999999999999999999999999986 34 4555432 222111100 00
Q ss_pred ccch-------------------hhHHhHc--------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH
Q 027392 57 PHSA-------------------IGTARRM--------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 103 (224)
Q Consensus 57 ~~~~-------------------~~~~~~~--------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~ 103 (224)
.++. ....+.+ .-.|+||+||++||++++.+|++|||||||++||..
T Consensus 122 ~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~ 201 (271)
T PRK14238 122 YDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPI 201 (271)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHH
Confidence 0000 0000111 124799999999999999999999999999999965
Q ss_pred H-------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 104 A-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 104 ~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
. +.++.+ +.|+|++||+.+++..+||+++ ++++|+++..++......
T Consensus 202 ~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~--~l~~G~i~~~g~~~~~~~ 255 (271)
T PRK14238 202 STLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTA--FFLNGYVNEYDDTDKIFS 255 (271)
T ss_pred HHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHc
Confidence 3 334433 6899999999998889999997 446677888888776543
No 216
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=9.2e-26 Score=193.05 Aligned_cols=145 Identities=15% Similarity=0.211 Sum_probs=102.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCc-ccCCCCcccch---
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNE-IGGDGDIPHSA--- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~-~~~~~~~~~~~--- 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +... ......+.++.
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~ 108 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTISKILTGLLKPQ-SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG 108 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhH
Confidence 368899999999999999999999999999887 56654422 1110 00000000000
Q ss_pred ---------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHH
Q 027392 61 ---------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSI 108 (224)
Q Consensus 61 ---------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~ 108 (224)
....+.+++ .|+||+||++||+|++.+|++|||||||++||... +.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~ 188 (271)
T PRK13632 109 LENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDL 188 (271)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 001122222 36999999999999999999999999999999653 3444
Q ss_pred HHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 109 AER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 109 ~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+++ +.|+|++||+.++.. .||+++ ++.+|+++..++.+...
T Consensus 189 ~~~~~~tiii~sH~~~~~~-~~d~v~--~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 189 RKTRKKTLISITHDMDEAI-LADKVI--VFSEGKLIAQGKPKEIL 230 (271)
T ss_pred HHhcCcEEEEEEechhHHh-hCCEEE--EEECCEEEEecCHHHHh
Confidence 444 489999999998775 799997 44567777777766544
No 217
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.8e-25 Score=187.04 Aligned_cols=142 Identities=21% Similarity=0.263 Sum_probs=100.5
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCC----------CC
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGD----------GD 55 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~----------~~ 55 (224)
.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +...+... ..
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~ 101 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS-SGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPD 101 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCC
Confidence 68899999999999999999999999999887 56665422 11111100 00
Q ss_pred cccc-hh------h---HHhH------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH-------H
Q 027392 56 IPHS-AI------G---TARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------R 106 (224)
Q Consensus 56 ~~~~-~~------~---~~~~------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~-------~ 106 (224)
.... .. . .... ..-.|+||+||++||++++.+|++|||||||++||.... .
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~ 181 (236)
T cd03253 102 ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALR 181 (236)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 0000 00 0 0011 123579999999999999999999999999999996543 3
Q ss_pred HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHH
Q 027392 107 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 151 (224)
Q Consensus 107 ~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~ 151 (224)
++++ |.|||++||+.++... ||+++ ++++++++..++.+..
T Consensus 182 ~~~~-~~tiii~sh~~~~~~~-~d~~~--~l~~g~i~~~~~~~~~ 222 (236)
T cd03253 182 DVSK-GRTTIVIAHRLSTIVN-ADKII--VLKDGRIVERGTHEEL 222 (236)
T ss_pred HhcC-CCEEEEEcCCHHHHHh-CCEEE--EEECCEEEeeCCHHHH
Confidence 3344 8899999999988865 99997 4455677776665543
No 218
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=192.19 Aligned_cols=147 Identities=16% Similarity=0.150 Sum_probs=103.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCC-----ccCCCeEEEE---------------------cCCCcccCC----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQKRVVIV---------------------DTSNEIGGD---- 53 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~-----~~~~~~i~~~---------------------~~~~~~~~~---- 53 (224)
-.|++|++++|+||||||||||+++|+|+++ |+ .|.+.+. .+...+...
T Consensus 34 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~-~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~e 112 (269)
T PRK14259 34 CDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL-KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYE 112 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC-ceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHH
Confidence 3689999999999999999999999999986 34 4555432 221111000
Q ss_pred -----C---Ccccc----hhhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---
Q 027392 54 -----G---DIPHS----AIGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 104 (224)
Q Consensus 54 -----~---~~~~~----~~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~--- 104 (224)
. .+... .....+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 113 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~ 192 (269)
T PRK14259 113 NIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLK 192 (269)
T ss_pred HHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHH
Confidence 0 00000 000011121 147899999999999999999999999999999653
Q ss_pred ----HHHHHHcCCEEEEEEeCcchHHhhccceeeeccC----------CeeEEEcCCHHHHHH
Q 027392 105 ----CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIG----------GVDTVTLGDEEARAR 153 (224)
Q Consensus 105 ----~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~----------~~~~v~~~~~~~~~~ 153 (224)
+.+++ ++.|||++||+.+++..+||+++. |.+ .|+++..+++...+.
T Consensus 193 l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~i~~-l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 193 IEETMHELK-KNFTIVIVTHNMQQAVRVSDMTAF-FNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred HHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEE-EeccccccccccccceEEEeCCHHHHHh
Confidence 33343 368999999999999999999975 543 256788888877654
No 219
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.1e-25 Score=180.40 Aligned_cols=141 Identities=15% Similarity=0.130 Sum_probs=101.7
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE--------------cCCCcccCCCCcccchhh------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV--------------DTSNEIGGDGDIPHSAIG------ 62 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~--------------~~~~~~~~~~~~~~~~~~------ 62 (224)
+-.|.+||.+.++||+||||||||++++|+..|. .|++... .|++.+.+..+..++...
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~-~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~G 103 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS-RGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRG 103 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc-cceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcC
Confidence 4578999999999999999999999999999987 5555432 222221111111111100
Q ss_pred ------------HHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH--------HHHHHHcC
Q 027392 63 ------------TARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--------CRSIAERG 112 (224)
Q Consensus 63 ------------~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~--------~~~~~~~g 112 (224)
....+++ .||||+||+.+||||+.+|++|+||||+..||.-. +.-+++.|
T Consensus 104 i~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tg 183 (259)
T COG4525 104 IEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETG 183 (259)
T ss_pred CCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhC
Confidence 1122232 26999999999999999999999999999999532 22346789
Q ss_pred CEEEEEEeCcchHHhhccceeeeccCC-eeEEEc
Q 027392 113 VMLIGTAHGEWLENIIKNPILSDLIGG-VDTVTL 145 (224)
Q Consensus 113 ~tvi~~tH~~~~~~~~~d~v~~~l~~~-~~~v~~ 145 (224)
+.++++||+.+++-.++++++. +..+ |++|.-
T Consensus 184 k~~lliTH~ieEAlflatrLvv-lsp~pgRvv~~ 216 (259)
T COG4525 184 KQVLLITHDIEEALFLATRLVV-LSPGPGRVVER 216 (259)
T ss_pred CeEEEEeccHHHHHhhhheeEE-ecCCCceeeEe
Confidence 9999999999999999999875 4443 566654
No 220
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=189.81 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=102.7
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc----CCCeEEE--------------------EcCCCcccCC-----
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVI--------------------VDTSNEIGGD----- 53 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~----~~~~i~~--------------------~~~~~~~~~~----- 53 (224)
+-.+++|++++|+||||||||||+++|+|+++|+ ..|.+.+ +.+...+...
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~ 102 (249)
T PRK14253 23 NLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYEN 102 (249)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHH
Confidence 3468999999999999999999999999998752 1354443 2222111100
Q ss_pred ---C----Ccc-cchh-----hHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH--
Q 027392 54 ---G----DIP-HSAI-----GTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-- 104 (224)
Q Consensus 54 ---~----~~~-~~~~-----~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-- 104 (224)
. ... .... ...+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 182 (249)
T PRK14253 103 VAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATH 182 (249)
T ss_pred HHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHH
Confidence 0 000 0000 0011111 246899999999999999999999999999999653
Q ss_pred -----HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 -----CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 -----~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.++.+ +.|||++||+.+++..+||+++ ++.+|+++..++.+...
T Consensus 183 ~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 183 KIEELMEELKK-NYTIVIVTHSMQQARRISDRTA--FFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHH
Confidence 334433 5899999999998899999997 45567788877766543
No 221
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.93 E-value=1.4e-25 Score=191.64 Aligned_cols=146 Identities=15% Similarity=0.195 Sum_probs=104.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC----------------------CCc--ccCCCCcccc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT----------------------SNE--IGGDGDIPHS 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~----------------------~~~--~~~~~~~~~~ 59 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+. ... +.........
T Consensus 33 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~ 111 (268)
T PRK10419 33 LSLKSGETVALLGRSGCGKSTLARLLVGLESPS-QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREI 111 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHH
Confidence 468999999999999999999999999999887 566554321 110 0000000000
Q ss_pred h-------------------hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH------
Q 027392 60 A-------------------IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH------ 103 (224)
Q Consensus 60 ~-------------------~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~------ 103 (224)
. ......+++ .|+||+||++||++++.+|++|||||||++||..
T Consensus 112 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~ 191 (268)
T PRK10419 112 IREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVI 191 (268)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH
Confidence 0 000112222 3689999999999999999999999999999964
Q ss_pred -HHHHHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 104 -ACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 104 -~~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
.+++++++ +.|+|++||+.++...+||+++. + .+|+++..+++....
T Consensus 192 ~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~-l-~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 192 RLLKKLQQQFGTACLFITHDLRLVERFCQRVMV-M-DNGQIVETQPVGDKL 240 (268)
T ss_pred HHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEE-E-ECCEEeeeCChhhcc
Confidence 34455544 89999999999999999999974 4 556777777766543
No 222
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=1.7e-25 Score=179.94 Aligned_cols=124 Identities=13% Similarity=0.073 Sum_probs=87.4
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccC--CCCcccchhhHHhH-----------cCC
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--DGDIPHSAIGTARR-----------MQV 69 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~-----------~~~ 69 (224)
+-.+++|++++|+||||||||||||++.+ + .|.+.+......... ...+++ ....+. ..-
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~----~-~G~v~~~~~~~~~~~~~~~~~~q--~~~l~~~~L~~~~~~~~~~~ 87 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A-SGKARLISFLPKFSRNKLIFIDQ--LQFLIDVGLGYLTLGQKLST 87 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhh----c-CCcEEECCcccccccccEEEEhH--HHHHHHcCCCccccCCCcCc
Confidence 44789999999999999999999999863 2 355543221110000 000000 111112 223
Q ss_pred CCccHHHHHHHHHHHhcC--CCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 70 PEPSLQHKVMIEAVENHM--PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~~--p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
.|+||+||+++|++++.+ |+++|+|||+++||... ++++++.|.|||++||+.++. ..||+++.
T Consensus 88 LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~-~~~d~i~~ 160 (176)
T cd03238 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL-SSADWIID 160 (176)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEE
Confidence 478999999999999999 99999999999999653 334455689999999999876 47999864
No 223
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.93 E-value=7.3e-26 Score=198.45 Aligned_cols=140 Identities=16% Similarity=0.247 Sum_probs=101.0
Q ss_pred EEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------CCCcccCCCCcccch----------------
Q 027392 14 FVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------TSNEIGGDGDIPHSA---------------- 60 (224)
Q Consensus 14 l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------~~~~~~~~~~~~~~~---------------- 60 (224)
|+||||||||||+|+|+|+++|+ .|.|.+.+ +...+.....+.++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~-~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD-SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC-ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 68999999999999999999987 56665422 211111100000000
Q ss_pred --hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-cCCEEEEEEe
Q 027392 61 --IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAH 120 (224)
Q Consensus 61 --~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~-~g~tvi~~tH 120 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||... +.++.+ .|.|+|++||
T Consensus 80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTH 159 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159 (325)
T ss_pred HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 001122222 36999999999999999999999999999999653 334443 4899999999
Q ss_pred CcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhh
Q 027392 121 GEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 156 (224)
Q Consensus 121 ~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~ 156 (224)
+.+++..+||+++ ++++|+++..++++..+..+.
T Consensus 160 d~~e~~~~~d~i~--vl~~G~i~~~g~~~~~~~~~~ 193 (325)
T TIGR01187 160 DQEEAMTMSDRIA--IMRKGKIAQIGTPEEIYEEPA 193 (325)
T ss_pred CHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCCC
Confidence 9999999999997 556678888888888776543
No 224
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.93 E-value=1.3e-25 Score=184.06 Aligned_cols=130 Identities=19% Similarity=0.140 Sum_probs=93.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC---------cccCC---------CCcccc-----
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN---------EIGGD---------GDIPHS----- 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~---------~~~~~---------~~~~~~----- 59 (224)
+-.|++|++++|+|+||||||||+++|+|+++|+ .|.+.+.+... .+++. ....++
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 98 (201)
T cd03231 20 SFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL-AGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWH 98 (201)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhc
Confidence 3468999999999999999999999999999887 56665432110 01000 000000
Q ss_pred -------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCEE
Q 027392 60 -------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVML 115 (224)
Q Consensus 60 -------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~tv 115 (224)
.....+.+++ .|+||+||+++|++++.+|++|||||||++||... +.+++++|.|+
T Consensus 99 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~ti 178 (201)
T cd03231 99 ADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMV 178 (201)
T ss_pred ccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 0001122222 36999999999999999999999999999999643 33445568999
Q ss_pred EEEEeCcchHHhhcccee
Q 027392 116 IGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 116 i~~tH~~~~~~~~~d~v~ 133 (224)
|++||+......+|++++
T Consensus 179 ii~sH~~~~~~~~~~~~~ 196 (201)
T cd03231 179 VLTTHQDLGLSEAGAREL 196 (201)
T ss_pred EEEecCchhhhhccceeE
Confidence 999999776777888885
No 225
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.93 E-value=1.7e-25 Score=207.32 Aligned_cols=82 Identities=11% Similarity=0.126 Sum_probs=67.5
Q ss_pred CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCee
Q 027392 70 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD 141 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~ 141 (224)
.|+||+||++||+|++.+|++|||||||++||+.. ++++.+ .|.|||++||+.+++..+||+++. | .+|+
T Consensus 169 LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~-l-~~G~ 246 (520)
T TIGR03269 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIW-L-ENGE 246 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE-E-eCCE
Confidence 37999999999999999999999999999999653 345544 489999999999999999999974 4 5567
Q ss_pred EEEcCCHHHHHH
Q 027392 142 TVTLGDEEARAR 153 (224)
Q Consensus 142 ~v~~~~~~~~~~ 153 (224)
++..++++....
T Consensus 247 i~~~g~~~~~~~ 258 (520)
T TIGR03269 247 IKEEGTPDEVVA 258 (520)
T ss_pred EeeecCHHHHHH
Confidence 777777665543
No 226
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=1.5e-25 Score=191.87 Aligned_cols=147 Identities=17% Similarity=0.186 Sum_probs=104.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccC-------CCeEEEE-------------------cCCCcccCCCCc-
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-------QKRVVIV-------------------DTSNEIGGDGDI- 56 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~-------~~~i~~~-------------------~~~~~~~~~~~~- 56 (224)
-.|++|++++|+||||||||||+|+|+|+++|+. .|.|.+. .+.....+...+
T Consensus 22 l~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~ 101 (272)
T PRK13547 22 LRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAR 101 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHH
Confidence 4689999999999999999999999999998751 3555442 111110000000
Q ss_pred --------cc---------c----hhhHHhHcCC----------CCccHHHHHHHHHHHh---------cCCCEEEEeCC
Q 027392 57 --------PH---------S----AIGTARRMQV----------PEPSLQHKVMIEAVEN---------HMPEVIIVDEI 96 (224)
Q Consensus 57 --------~~---------~----~~~~~~~~~~----------~~~g~~qr~~la~al~---------~~p~llilDEp 96 (224)
+. . .....+.+++ .|+||+||+++|++++ .+|++||||||
T Consensus 102 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEP 181 (272)
T PRK13547 102 EIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEP 181 (272)
T ss_pred HHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCc
Confidence 00 0 0001112222 3699999999999999 49999999999
Q ss_pred CChHhHHH-------HHHHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 97 GTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 97 ~~~lD~~~-------~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
|++||... ++++.++ +.|||++||+.++...+||+++ ++.+|+++..++++...
T Consensus 182 t~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 182 TAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIA--MLADGAIVAHGAPADVL 243 (272)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE--EEECCeEEEecCHHHHc
Confidence 99999643 3444444 8999999999998888999997 44557788887776654
No 227
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.2e-25 Score=188.37 Aligned_cols=145 Identities=13% Similarity=0.131 Sum_probs=103.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCC--c---cCCCeEEEEc---------------------CCCcccCCCCcc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLS--D---EFQKRVVIVD---------------------TSNEIGGDGDIP 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~--~---~~~~~i~~~~---------------------~~~~~~~~~~~~ 57 (224)
-.|++||+++|+|+||||||||+++|+|+++ | + .|.|.+.+ +...+.. ..+.
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~-~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 102 (251)
T PRK14251 25 LDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKI-TGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVY 102 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCc-ceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHH
Confidence 3689999999999999999999999999986 2 3 45554322 1111110 0000
Q ss_pred cc-------------------hhhHHhHcCC--------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH
Q 027392 58 HS-------------------AIGTARRMQV--------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104 (224)
Q Consensus 58 ~~-------------------~~~~~~~~~~--------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~ 104 (224)
++ .....+.+++ .|+||+||++||++++.+|++||||||+++||...
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~ 182 (251)
T PRK14251 103 DNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPIS 182 (251)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHH
Confidence 00 0000111222 36899999999999999999999999999999654
Q ss_pred H-------HHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 C-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 ~-------~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
. +++. ++.|||++||+.+++..+||+++ ++.+|+++..++.+..+.
T Consensus 183 ~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14251 183 SSEIEETLMELK-HQYTFIMVTHNLQQAGRISDQTA--FLMNGDLIEAGPTEEMFI 235 (251)
T ss_pred HHHHHHHHHHHH-cCCeEEEEECCHHHHHhhcCEEE--EEECCEEEEeCCHHHHHh
Confidence 3 3333 36899999999998889999997 445577888887776553
No 228
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.5e-25 Score=189.65 Aligned_cols=147 Identities=14% Similarity=0.099 Sum_probs=102.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCc--c--CCCeEEE---------------------EcCCCcccCC-----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSD--E--FQKRVVI---------------------VDTSNEIGGD----- 53 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~--~--~~~~i~~---------------------~~~~~~~~~~----- 53 (224)
-.+++|++++|+||||||||||+++|+|+..+ + ..|.+.+ +.+...+...
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 106 (253)
T PRK14261 27 ISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYEN 106 (253)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHHHH
Confidence 36899999999999999999999999998752 1 1354443 2222111100
Q ss_pred ----CCc----ccc-----hhhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH--
Q 027392 54 ----GDI----PHS-----AIGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-- 104 (224)
Q Consensus 54 ----~~~----~~~-----~~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-- 104 (224)
... ... .....+.++ -.|+||+||++||++++.+|+++||||||++||...
T Consensus 107 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~ 186 (253)
T PRK14261 107 VAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186 (253)
T ss_pred HHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 000 000 000011111 247999999999999999999999999999999653
Q ss_pred -----HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 -----CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 -----~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+.++++ +.|+|++||+.++...+||+++ ++++|+++..++.+....
T Consensus 187 ~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14261 187 KIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTG--FMYLGKLIEFDKTTQIFE 237 (253)
T ss_pred HHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEE--EEECCEEEEcCCHHHHHh
Confidence 333433 5899999999998888999997 456677888888776553
No 229
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2e-25 Score=192.31 Aligned_cols=145 Identities=19% Similarity=0.188 Sum_probs=103.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCC-----ccCCCeEEEE---------------------cCCCcccCCCCcc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQKRVVIV---------------------DTSNEIGGDGDIP 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~-----~~~~~~i~~~---------------------~~~~~~~~~~~~~ 57 (224)
-.|++|++++|+||||||||||+++|+|+++ |+ .|.|.+. .+...+... .+.
T Consensus 60 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~-~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~ 137 (285)
T PRK14254 60 MDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARV-EGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIY 137 (285)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCC-ceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHH
Confidence 3689999999999999999999999999986 34 4655442 221111100 000
Q ss_pred cch-----------------hhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH--
Q 027392 58 HSA-----------------IGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-- 104 (224)
Q Consensus 58 ~~~-----------------~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-- 104 (224)
.+. ....+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 138 enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~ 217 (285)
T PRK14254 138 DNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATS 217 (285)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHH
Confidence 000 00111222 236999999999999999999999999999999653
Q ss_pred -----HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 -----CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 -----~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++++++ +.|||++||+.+++..+||+++. ++.+|+++..++....+
T Consensus 218 ~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dri~v-~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 218 KIEDLIEELAE-EYTVVIVTHNMQQAARISDKTAV-FLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEEEE-EeeCCEEEEeCCHHHHH
Confidence 334443 47999999999999999999753 44667788887776554
No 230
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8.2e-26 Score=213.45 Aligned_cols=147 Identities=18% Similarity=0.210 Sum_probs=106.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE---------------------------------EcCCC-
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI---------------------------------VDTSN- 48 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~---------------------------------~~~~~- 48 (224)
+-.|++|++++|+||||||||||+|+|+|+++|+ .|.|.+ +.|..
T Consensus 36 s~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 114 (623)
T PRK10261 36 SFSLQRGETLAIVGESGSGKSVTALALMRLLEQA-GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPM 114 (623)
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCch
Confidence 4468999999999999999999999999999886 455543 11111
Q ss_pred -cccCCCCcccch-------------------hhHHhHcCC-------------CCccHHHHHHHHHHHhcCCCEEEEeC
Q 027392 49 -EIGGDGDIPHSA-------------------IGTARRMQV-------------PEPSLQHKVMIEAVENHMPEVIIVDE 95 (224)
Q Consensus 49 -~~~~~~~~~~~~-------------------~~~~~~~~~-------------~~~g~~qr~~la~al~~~p~llilDE 95 (224)
.+.....+.++. ....+.+++ .|+||+||++||+||+.+|++|||||
T Consensus 115 ~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDE 194 (623)
T PRK10261 115 TSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADE 194 (623)
T ss_pred hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 000000000000 001223333 36999999999999999999999999
Q ss_pred CCChHhHHH-------HHHHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 96 IGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 96 p~~~lD~~~-------~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
||++||... ++++.++ |.|||++||+++++..+||+++ ++.+|+++..++++..+
T Consensus 195 Pt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~--vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 195 PTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVL--VMYQGEAVETGSVEQIF 257 (623)
T ss_pred CCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE--EeeCCeecccCCHHHhh
Confidence 999999643 4455544 8999999999999999999997 55567788777776654
No 231
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.6e-25 Score=189.19 Aligned_cols=148 Identities=15% Similarity=0.149 Sum_probs=105.9
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc----CCCeEEEEc---------------------CCCcccCCCCcc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVIVD---------------------TSNEIGGDGDIP 57 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~----~~~~i~~~~---------------------~~~~~~~~~~~~ 57 (224)
+-.+++|++++|+|+||||||||+++|+|+++|+ ..|.+.+.+ +...+.. ....
T Consensus 27 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~ 105 (261)
T PRK14258 27 SMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVY 105 (261)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHH
Confidence 3468999999999999999999999999999873 135444322 1111000 0000
Q ss_pred cch-------------------hhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH
Q 027392 58 HSA-------------------IGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104 (224)
Q Consensus 58 ~~~-------------------~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~ 104 (224)
.+. ....+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 106 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~ 185 (261)
T PRK14258 106 DNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIA 185 (261)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 000 00011222 247999999999999999999999999999999653
Q ss_pred -------HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCC-----eeEEEcCCHHHHHH
Q 027392 105 -------CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGG-----VDTVTLGDEEARAR 153 (224)
Q Consensus 105 -------~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~-----~~~v~~~~~~~~~~ 153 (224)
+.++++ .+.|+|++||+.+++..+||+++ ++.+ |+++..++++....
T Consensus 186 ~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~--~l~~~~~~~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 186 SMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTA--FFKGNENRIGQLVEFGLTKKIFN 245 (261)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEE--EEccCCCcCceEEEeCCHHHHHh
Confidence 334433 48999999999999999999997 4454 78888888877654
No 232
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.1e-25 Score=189.89 Aligned_cols=147 Identities=16% Similarity=0.140 Sum_probs=105.1
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc----CCCeEEEEcC---------------------CCcccCCCCccc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVIVDT---------------------SNEIGGDGDIPH 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~----~~~~i~~~~~---------------------~~~~~~~~~~~~ 58 (224)
-.+++|++++|+|+||||||||+++|+|+++|. ..|.|.+.+. ...+.. ....+
T Consensus 29 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 107 (261)
T PRK14263 29 VPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFS-MSIFD 107 (261)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcccc-ccHHH
Confidence 468999999999999999999999999999761 2465554321 111100 00000
Q ss_pred c-----------------hhhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---
Q 027392 59 S-----------------AIGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 104 (224)
Q Consensus 59 ~-----------------~~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~--- 104 (224)
+ .....+.++ -.|+||+||++||+|++.+|++|||||||++||...
T Consensus 108 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~ 187 (261)
T PRK14263 108 NVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRR 187 (261)
T ss_pred HHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHH
Confidence 0 000111222 247899999999999999999999999999999653
Q ss_pred ----HHHHHHcCCEEEEEEeCcchHHhhccceeeecc-------CCeeEEEcCCHHHHHH
Q 027392 105 ----CRSIAERGVMLIGTAHGEWLENIIKNPILSDLI-------GGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 ----~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~-------~~~~~v~~~~~~~~~~ 153 (224)
++++. ++.|+|++||+.+++..+||+++. +. ++|+++..++.+....
T Consensus 188 l~~~l~~~~-~~~tii~isH~~~~i~~~~d~v~~-l~~~~~~~~~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 188 VEELMVELK-KDYTIALVTHNMQQAIRVADTTAF-FSVDISQGTRTGYLVEMGPTAQIFQ 245 (261)
T ss_pred HHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEE-EecccccccCCceEEEeCCHHHHHh
Confidence 33443 468999999999988999999974 43 3678888888776553
No 233
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.93 E-value=2e-25 Score=206.75 Aligned_cols=146 Identities=22% Similarity=0.202 Sum_probs=105.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-cCC----------------CcccCC----CCcc-----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-DTS----------------NEIGGD----GDIP----- 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-~~~----------------~~~~~~----~~~~----- 57 (224)
-.|++|++++|+||||||||||+|+|+|+++|+ .|.|.+. +.. ..+++. ..++
T Consensus 305 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 383 (520)
T TIGR03269 305 LEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT-SGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVL 383 (520)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHH
Confidence 368999999999999999999999999999887 5777653 210 001110 0000
Q ss_pred cch-----------------hhHHhHcCC---------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027392 58 HSA-----------------IGTARRMQV---------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 58 ~~~-----------------~~~~~~~~~---------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
.+. ....+.+++ .|+||+||++||+|++.+|++|||||||++||...
T Consensus 384 e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~ 463 (520)
T TIGR03269 384 DNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITK 463 (520)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 000 001122222 36999999999999999999999999999999643
Q ss_pred ------HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 ------CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 ------~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++++++ .|.|||++||+.+++..+||+++ ++++|+++..++++...
T Consensus 464 ~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 516 (520)
T TIGR03269 464 VDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAA--LMRDGKIVKIGDPEEIV 516 (520)
T ss_pred HHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHH
Confidence 344444 48999999999999999999997 44557777777766543
No 234
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.1e-25 Score=205.99 Aligned_cols=145 Identities=17% Similarity=0.202 Sum_probs=103.4
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE--------EcCCCcccCCCCc------------------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--------VDTSNEIGGDGDI------------------ 56 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~--------~~~~~~~~~~~~~------------------ 56 (224)
+-.|++|++++|+||||||||||+|+|+|+++|+ .|.+.+ +.+..........
T Consensus 21 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 99 (530)
T PRK15064 21 SVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS-AGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQER 99 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 3478999999999999999999999999999887 465543 3332211100000
Q ss_pred ------c--------------------------cchhhHHhH-----------cCCCCccHHHHHHHHHHHhcCCCEEEE
Q 027392 57 ------P--------------------------HSAIGTARR-----------MQVPEPSLQHKVMIEAVENHMPEVIIV 93 (224)
Q Consensus 57 ------~--------------------------~~~~~~~~~-----------~~~~~~g~~qr~~la~al~~~p~llil 93 (224)
+ .......+. ..-.|+||+||++||++++.+|++|||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlL 179 (530)
T PRK15064 100 DRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLL 179 (530)
T ss_pred HHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0 000000111 222479999999999999999999999
Q ss_pred eCCCChHhHHHHHH----HHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEE-EcCCHHH
Q 027392 94 DEIGTEAEAHACRS----IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV-TLGDEEA 150 (224)
Q Consensus 94 DEp~~~lD~~~~~~----~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v-~~~~~~~ 150 (224)
||||++||...... +.+.+.|||++||+.++...+||+++. + ++|+++ ..++.+.
T Consensus 180 DEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~-l-~~g~i~~~~g~~~~ 239 (530)
T PRK15064 180 DEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMAD-L-DYGELRVYPGNYDE 239 (530)
T ss_pred cCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEE-E-eCCEEEEecCCHHH
Confidence 99999999765432 345689999999999999999999974 4 456663 4566553
No 235
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=1.3e-25 Score=184.54 Aligned_cols=137 Identities=18% Similarity=0.192 Sum_probs=96.4
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-------------------cCCCcccCCCCcccch----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-------------------DTSNEIGGDGDIPHSA---- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-------------------~~~~~~~~~~~~~~~~---- 60 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+. .+...+.. ..+..+.
T Consensus 29 l~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~ 106 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE-EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD 106 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC
Confidence 468899999999999999999999999999887 5655542 22211110 0000000
Q ss_pred -------hhHH---hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH-------HHHHHcCCEEEEEEeCcc
Q 027392 61 -------IGTA---RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEW 123 (224)
Q Consensus 61 -------~~~~---~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~-------~~~~~~g~tvi~~tH~~~ 123 (224)
.... ....-.|+||+||+++|++++.+|+++||||||++||.... +++ .++.|+|++||+.+
T Consensus 107 ~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~th~~~ 185 (207)
T cd03369 107 EYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREE-FTNSTILTIAHRLR 185 (207)
T ss_pred CCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHH
Confidence 0000 11223479999999999999999999999999999996543 233 24789999999998
Q ss_pred hHHhhccceeeeccCCeeEEEcC
Q 027392 124 LENIIKNPILSDLIGGVDTVTLG 146 (224)
Q Consensus 124 ~~~~~~d~v~~~l~~~~~~v~~~ 146 (224)
+... ||+++. + ++|+++..+
T Consensus 186 ~~~~-~d~v~~-l-~~g~i~~~g 205 (207)
T cd03369 186 TIID-YDKILV-M-DAGEVKEYD 205 (207)
T ss_pred HHhh-CCEEEE-E-ECCEEEecC
Confidence 8765 899874 4 445555543
No 236
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=7.4e-26 Score=178.40 Aligned_cols=122 Identities=23% Similarity=0.362 Sum_probs=93.9
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCC---CCccHHHHHHHH
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV---PEPSLQHKVMIE 81 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~qr~~la 81 (224)
.+++|++++|+|+||||||||+++|+|++.++ .|.+.+.+. .+... . .......+.. .|+||+||++++
T Consensus 21 ~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~-~G~i~~~~~--~~~~~---~--~~~~~~~i~~~~qlS~G~~~r~~l~ 92 (157)
T cd00267 21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILIDGK--DIAKL---P--LEELRRRIGYVPQLSGGQRQRVALA 92 (157)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCE--EcccC---C--HHHHHhceEEEeeCCHHHHHHHHHH
Confidence 58899999999999999999999999999887 677765432 11100 0 0000011111 689999999999
Q ss_pred HHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 82 AVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 82 ~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
++++.+|+++++||||++||... +.++.+.+.|++++||+.++...+||+++.
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~ 152 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIV 152 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999999999999999543 334444568999999999999999999864
No 237
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.93 E-value=1.4e-25 Score=208.18 Aligned_cols=148 Identities=16% Similarity=0.188 Sum_probs=104.7
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc----CCCeEEE-----------------------EcCCCc--ccCC
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVI-----------------------VDTSNE--IGGD 53 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~----~~~~i~~-----------------------~~~~~~--~~~~ 53 (224)
+-.+.+||+++|+||||||||||+|+|+|+++|. ..|.+.+ +.|... +...
T Consensus 29 sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~ 108 (529)
T PRK15134 29 SLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPL 108 (529)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCch
Confidence 3468999999999999999999999999999861 1354433 322211 0000
Q ss_pred CC--------------cccc-----hhhHHhHcC-------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHh
Q 027392 54 GD--------------IPHS-----AIGTARRMQ-------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 101 (224)
Q Consensus 54 ~~--------------~~~~-----~~~~~~~~~-------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD 101 (224)
.. .... .....+.++ -.|+||+||++||+|++.+|++|||||||++||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD 188 (529)
T PRK15134 109 HTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALD 188 (529)
T ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccC
Confidence 00 0000 000112222 247999999999999999999999999999999
Q ss_pred HHH-------HHHHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 102 AHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 102 ~~~-------~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.. +++++++ |.|||++||+++++..+||+++ ++.+|+++..+++....
T Consensus 189 ~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~--~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 189 VSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVA--VMQNGRCVEQNRAATLF 245 (529)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEE--EEECCEEEEeCCHHHHh
Confidence 653 3445444 8999999999999999999997 44557777777776543
No 238
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.3e-25 Score=190.64 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=102.4
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCc-----cCCCeEEEE---------------------cCCCcccCCCCcc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKRVVIV---------------------DTSNEIGGDGDIP 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~-----~~~~~i~~~---------------------~~~~~~~~~~~~~ 57 (224)
-.+++|++++|+||||||||||+++|+|++++ + .|.+.+. .+...+... ...
T Consensus 46 ~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~-~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~ 123 (272)
T PRK14236 46 MRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI-EGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIY 123 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCC-ceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHH
Confidence 36899999999999999999999999999873 3 4555432 211111000 000
Q ss_pred cc-------------------hhhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH
Q 027392 58 HS-------------------AIGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104 (224)
Q Consensus 58 ~~-------------------~~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~ 104 (224)
.+ .....+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 124 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~ 203 (272)
T PRK14236 124 ENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIS 203 (272)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence 00 000011111 246899999999999999999999999999999653
Q ss_pred -------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 -------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 -------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.++++ +.|+|++||+.++...+||+++ ++++|+++..++.+...
T Consensus 204 ~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 204 TLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTA--FMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEE--EEECCEEEecCCHHHHh
Confidence 334444 6899999999998889999997 44567778777766544
No 239
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3e-25 Score=191.39 Aligned_cols=146 Identities=12% Similarity=0.105 Sum_probs=101.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCC--c---cCCCeEEEE---------------------cCCCcccCC----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLS--D---EFQKRVVIV---------------------DTSNEIGGD---- 53 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~--~---~~~~~i~~~---------------------~~~~~~~~~---- 53 (224)
-.|.+|++++|+||||||||||+++|+|+.. | + .|.|.+. .+...+...
T Consensus 60 l~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~-~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~e 138 (286)
T PRK14275 60 ADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT-TGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFD 138 (286)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCC-ceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHHH
Confidence 4689999999999999999999999999864 2 4 4555442 221111100
Q ss_pred --------CCccc-c-----hhhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027392 54 --------GDIPH-S-----AIGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 54 --------~~~~~-~-----~~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
..... . .....+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 139 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~ 218 (286)
T PRK14275 139 NIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKAT 218 (286)
T ss_pred HHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 00000 0 000011111 236999999999999999999999999999999653
Q ss_pred ------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 ------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 ------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
++++++ +.|||++||+.+++..+||+++ ++.+|+++..++......
T Consensus 219 ~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~--~L~~G~i~~~g~~~~~~~ 270 (286)
T PRK14275 219 AKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTM--FFYEGVLVEHAPTAQLFT 270 (286)
T ss_pred HHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHh
Confidence 233333 5899999999999889999997 445577888877766543
No 240
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.5e-25 Score=187.22 Aligned_cols=146 Identities=16% Similarity=0.162 Sum_probs=102.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCC--cc--CCCeEEE---------------------EcCCCcccCCCCcc-
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLS--DE--FQKRVVI---------------------VDTSNEIGGDGDIP- 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~--~~--~~~~i~~---------------------~~~~~~~~~~~~~~- 57 (224)
-.+.+|++++|+||||||||||+++|+|+.+ |+ ..|.|.+ +.+...+.. ....
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~ 104 (252)
T PRK14255 26 LDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYE 104 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHH
Confidence 3689999999999999999999999999864 31 1354443 222211110 0000
Q ss_pred ------------c-chh-h----HHhHc--------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027392 58 ------------H-SAI-G----TARRM--------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 58 ------------~-~~~-~----~~~~~--------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
. ... . ..+.+ .-.|+||+||++||++++.+|++|||||||++||...
T Consensus 105 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~ 184 (252)
T PRK14255 105 NVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISS 184 (252)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 0 000 0 00111 1246899999999999999999999999999999653
Q ss_pred ------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 ------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 ------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+.++.+ +.|+|++||+.+++..+||+++ ++++|+++..+++...+.
T Consensus 185 ~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14255 185 TQIENMLLELRD-QYTIILVTHSMHQASRISDKTA--FFLTGNLIEFADTKQMFL 236 (252)
T ss_pred HHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhc
Confidence 334433 5899999999998889999997 456678888887776653
No 241
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.93 E-value=1.4e-25 Score=182.14 Aligned_cols=121 Identities=17% Similarity=0.240 Sum_probs=85.8
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc---------------------CCCc-ccCCCCcccch
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD---------------------TSNE-IGGDGDIPHSA 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~---------------------~~~~-~~~~~~~~~~~ 60 (224)
+-.|++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +... ..+...+.++.
T Consensus 12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl 90 (190)
T TIGR01166 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ-SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDV 90 (190)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHH
Confidence 3468999999999999999999999999999887 56655421 1110 00000000000
Q ss_pred ------------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 61 ------------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 61 ------------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
....+.+++ .|+||+||++||++++.+|++|||||||++||... +
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 170 (190)
T TIGR01166 91 AFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAIL 170 (190)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 001122222 36899999999999999999999999999999643 4
Q ss_pred HHHHHcCCEEEEEEeCcch
Q 027392 106 RSIAERGVMLIGTAHGEWL 124 (224)
Q Consensus 106 ~~~~~~g~tvi~~tH~~~~ 124 (224)
.+++++|.|||++||+.++
T Consensus 171 ~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 171 RRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHcCCEEEEEeecccc
Confidence 4555668999999999864
No 242
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.1e-25 Score=180.70 Aligned_cols=149 Identities=20% Similarity=0.282 Sum_probs=113.3
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC------ccc----------------------CC
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN------EIG----------------------GD 53 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~------~~~----------------------~~ 53 (224)
++..+++|.++.|+|||||||||||.+++++++.+ .|.+.+-...- +++ ..
T Consensus 20 isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d-~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~F 98 (252)
T COG4604 20 VSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD-SGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGF 98 (252)
T ss_pred ceeeecCCceeEEECCCCccHHHHHHHHHHhcccc-CceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhc
Confidence 45689999999999999999999999999999998 68777632210 000 01
Q ss_pred CCcccch----------h-hHH----------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------HH
Q 027392 54 GDIPHSA----------I-GTA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------AC 105 (224)
Q Consensus 54 ~~~~~~~----------~-~~~----------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~~ 105 (224)
+.+|... + ... +.+.-.||||+||.-+|..++++.++++||||.++||.+ .+
T Consensus 99 GRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~L 178 (252)
T COG4604 99 GRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKIL 178 (252)
T ss_pred CCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHH
Confidence 2222210 0 011 223335799999999999999999999999999999954 34
Q ss_pred HHHH-HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 106 RSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 106 ~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+.+. +.|+||+++-||.+++..++|.++. + .+|+++..|.++.+..
T Consensus 179 rrla~el~KtiviVlHDINfAS~YsD~IVA-l-K~G~vv~~G~~~eii~ 225 (252)
T COG4604 179 RRLADELGKTIVVVLHDINFASCYSDHIVA-L-KNGKVVKQGSPDEIIQ 225 (252)
T ss_pred HHHHHHhCCeEEEEEecccHHHhhhhheee-e-cCCEEEecCCHHHhcC
Confidence 4444 5599999999999999999999985 4 5578999999998763
No 243
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.3e-25 Score=189.20 Aligned_cols=146 Identities=12% Similarity=0.108 Sum_probs=104.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCc-----cCCCeEEEE---------------------cCCCcccCCCCc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKRVVIV---------------------DTSNEIGGDGDI 56 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~-----~~~~~i~~~---------------------~~~~~~~~~~~~ 56 (224)
+-.+.+||+++|+||||||||||+++|+|+++| + .|.|.+. .+...+... ..
T Consensus 40 sl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv 117 (267)
T PRK14237 40 DMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARV-TGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAK-SI 117 (267)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCc-ceEEEECCEEcccccCChHHHhcceEEEecCCccccc-cH
Confidence 346899999999999999999999999999863 3 4555432 221111100 00
Q ss_pred ccch-------------------hhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH
Q 027392 57 PHSA-------------------IGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 103 (224)
Q Consensus 57 ~~~~-------------------~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~ 103 (224)
.++. ....+.++ -.|+||+||++||++++.+|++|||||||++||..
T Consensus 118 ~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~ 197 (267)
T PRK14237 118 YENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPI 197 (267)
T ss_pred HHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 0000 00011222 23689999999999999999999999999999965
Q ss_pred H-------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 104 A-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 104 ~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
. +.++. ++.|||++||+.++...+||+++ ++.+|+++..+++.....
T Consensus 198 ~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14237 198 STMQLEETMFELK-KNYTIIIVTHNMQQAARASDYTA--FFYLGDLIEYDKTRNIFT 251 (267)
T ss_pred HHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEEE--EEECCEEEEeCCHHHHhc
Confidence 3 33343 46899999999998889999997 456678888888776543
No 244
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.9e-25 Score=206.12 Aligned_cols=140 Identities=15% Similarity=0.128 Sum_probs=101.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc--------------------CCCcccCCCCc------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD--------------------TSNEIGGDGDI------ 56 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~--------------------~~~~~~~~~~~------ 56 (224)
+-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+.+ |...+......
T Consensus 24 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 102 (501)
T PRK11288 24 SFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD-AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYL 102 (501)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHh
Confidence 3478999999999999999999999999999887 56665422 21111000000
Q ss_pred ----------cc-----chhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------
Q 027392 57 ----------PH-----SAIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------- 104 (224)
Q Consensus 57 ----------~~-----~~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------- 104 (224)
.. ......+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 182 (501)
T PRK11288 103 GQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRV 182 (501)
T ss_pred cccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 00 00001122332 36999999999999999999999999999999643
Q ss_pred HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEc
Q 027392 105 CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 145 (224)
Q Consensus 105 ~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~ 145 (224)
+.++.++|.|||++||+.+++..+||+++. + .+|+++..
T Consensus 183 l~~~~~~g~tiiiitHd~~~~~~~~d~i~~-l-~~G~i~~~ 221 (501)
T PRK11288 183 IRELRAEGRVILYVSHRMEEIFALCDAITV-F-KDGRYVAT 221 (501)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEEE-E-ECCEEEee
Confidence 344556689999999999999999999974 4 45666554
No 245
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.93 E-value=1.6e-25 Score=206.49 Aligned_cols=144 Identities=18% Similarity=0.194 Sum_probs=103.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCc--cCCCeEEE--------------------EcCCCcccCC-------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSD--EFQKRVVI--------------------VDTSNEIGGD------- 53 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~--~~~~~i~~--------------------~~~~~~~~~~------- 53 (224)
+-.+++|++++|+||||||||||+++|+|+++| + .|.|.+ +.|...+...
T Consensus 21 sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 99 (500)
T TIGR02633 21 DLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTW-DGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENI 99 (500)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-CeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHH
Confidence 347899999999999999999999999999986 3 455543 2222111100
Q ss_pred ---CCc-------ccc-----hhhHHhHc-----------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---
Q 027392 54 ---GDI-------PHS-----AIGTARRM-----------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 104 (224)
Q Consensus 54 ---~~~-------~~~-----~~~~~~~~-----------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~--- 104 (224)
... ... .....+.+ .-.|+||+||++||++++.+|++|||||||++||...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~ 179 (500)
T TIGR02633 100 FLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEI 179 (500)
T ss_pred HhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Confidence 000 000 00001112 2247999999999999999999999999999999643
Q ss_pred ----HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHH
Q 027392 105 ----CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEE 149 (224)
Q Consensus 105 ----~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~ 149 (224)
+.+++++|.|||++||+.+++..+||+++ ++++|+++..+++.
T Consensus 180 l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~--~l~~G~i~~~~~~~ 226 (500)
T TIGR02633 180 LLDIIRDLKAHGVACVYISHKLNEVKAVCDTIC--VIRDGQHVATKDMS 226 (500)
T ss_pred HHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEE--EEeCCeEeeecCcc
Confidence 44556678999999999999999999997 44556777665544
No 246
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=1e-25 Score=178.67 Aligned_cols=159 Identities=18% Similarity=0.213 Sum_probs=117.2
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC--------cc-cCC-----------------CC
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN--------EI-GGD-----------------GD 55 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~--------~~-~~~-----------------~~ 55 (224)
|+-.-.+|+++.|+|.+||||||+||||+=+-.|+ .|.|.+.++.- .+ ..+ ..
T Consensus 25 vSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~-~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FN 103 (256)
T COG4598 25 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS-AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFN 103 (256)
T ss_pred eeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC-CceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcc
Confidence 34556789999999999999999999999999988 67776543210 00 000 00
Q ss_pred cc-c-----ch---------------h----hHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChH
Q 027392 56 IP-H-----SA---------------I----GTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 100 (224)
Q Consensus 56 ~~-~-----~~---------------~----~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~l 100 (224)
.+ + +. + ....++++ .||||+||++|||||+..|+++++||||+.|
T Consensus 104 LWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSAL 183 (256)
T COG4598 104 LWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSAL 183 (256)
T ss_pred hhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccC
Confidence 00 0 00 0 01122332 3699999999999999999999999999999
Q ss_pred hHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027392 101 EAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 101 D~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
|++. ++.++++|.|.+++||.|.++...++.++ +++.|.+-..|+|+..+..+.......|
T Consensus 184 DPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~--fLh~G~iEE~G~P~qvf~nP~S~RlkqF 251 (256)
T COG4598 184 DPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVI--FLHQGKIEEEGPPEQVFGNPQSPRLKQF 251 (256)
T ss_pred CHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheE--EeecceecccCChHHHhcCCCCHHHHHH
Confidence 9764 46788999999999999999999999997 5676777778999988866544433333
No 247
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=2.3e-25 Score=182.79 Aligned_cols=129 Identities=13% Similarity=0.109 Sum_probs=93.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeE------EEEcCCCcccCC---------CCccc-chhhH----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV------VIVDTSNEIGGD---------GDIPH-SAIGT---- 63 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i------~~~~~~~~~~~~---------~~~~~-~~~~~---- 63 (224)
-.+++|++++|+||||||||||+++|+|+.+|+ .|.| .|+.+...+... ..+.. .....
T Consensus 26 ~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~-~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~ 104 (204)
T cd03250 26 LEVPKGELVAIVGPVGSGKSSLLSALLGELEKL-SGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKAC 104 (204)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC-CCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHc
Confidence 468999999999999999999999999999887 4544 455444322110 01100 00000
Q ss_pred -----Hh------------HcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH----H----HHHHcCCEEEEE
Q 027392 64 -----AR------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC----R----SIAERGVMLIGT 118 (224)
Q Consensus 64 -----~~------------~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~----~----~~~~~g~tvi~~ 118 (224)
.. ...-.|+||+||++||++++.+|+++|+||||++||.... + .+.+++.|||++
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~ 184 (204)
T cd03250 105 ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILV 184 (204)
T ss_pred CcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 00 1122479999999999999999999999999999996532 1 222447899999
Q ss_pred EeCcchHHhhccceee
Q 027392 119 AHGEWLENIIKNPILS 134 (224)
Q Consensus 119 tH~~~~~~~~~d~v~~ 134 (224)
||+.+.... ||+++.
T Consensus 185 sh~~~~~~~-~d~i~~ 199 (204)
T cd03250 185 THQLQLLPH-ADQIVV 199 (204)
T ss_pred eCCHHHHhh-CCEEEE
Confidence 999988876 999863
No 248
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=6.4e-25 Score=181.53 Aligned_cols=154 Identities=12% Similarity=0.185 Sum_probs=114.6
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-c----ccCCCCc--ccchhh-------------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-E----IGGDGDI--PHSAIG------------- 62 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-~----~~~~~~~--~~~~~~------------- 62 (224)
+=.+.+||.+||+|+||||||||+|+|+|.++|+ .|.+.....-. - .++.... .++...
T Consensus 47 sf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~ 125 (249)
T COG1134 47 SFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-SGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEID 125 (249)
T ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC-CceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHH
Confidence 3468999999999999999999999999999999 67766532110 0 0011000 000000
Q ss_pred -----------H----HhHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------HHHHHHHcCCEEEEEEe
Q 027392 63 -----------T----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAH 120 (224)
Q Consensus 63 -----------~----~~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~~~~~~~~g~tvi~~tH 120 (224)
. ...++-.|.||+-|++++.+...+|++||+||..+-.|.. .+.++.+++.|+|++||
T Consensus 126 ~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSH 205 (249)
T COG1134 126 EKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSH 205 (249)
T ss_pred HHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 0 0122334789999999999999999999999999988853 34556677899999999
Q ss_pred CcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHH
Q 027392 121 GEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSI 159 (224)
Q Consensus 121 ~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~ 159 (224)
++..+.++||+++ ++++|++...|+++.....+....
T Consensus 206 d~~~I~~~Cd~~i--~l~~G~i~~~G~~~~vi~~Y~~~~ 242 (249)
T COG1134 206 DLGAIKQYCDRAI--WLEHGQIRMEGSPEEVIPAYEEDL 242 (249)
T ss_pred CHHHHHHhcCeeE--EEeCCEEEEcCCHHHHHHHHHHhh
Confidence 9999999999998 456678999999998876665443
No 249
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.93 E-value=1.1e-25 Score=208.04 Aligned_cols=145 Identities=17% Similarity=0.175 Sum_probs=104.8
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE--------------------cCCC---cccCCCCc---
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV--------------------DTSN---EIGGDGDI--- 56 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~--------------------~~~~---~~~~~~~~--- 56 (224)
+-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+. .+.. .+......
T Consensus 283 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~ 361 (510)
T PRK15439 283 SLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR-GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWN 361 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHH
Confidence 3478999999999999999999999999999887 5665442 2210 00000000
Q ss_pred ---------c----cc-----hhhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---
Q 027392 57 ---------P----HS-----AIGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 104 (224)
Q Consensus 57 ---------~----~~-----~~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~--- 104 (224)
. .. .....+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 362 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~ 441 (510)
T PRK15439 362 VCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARND 441 (510)
T ss_pred HHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHH
Confidence 0 00 0001122232 36999999999999999999999999999999543
Q ss_pred ----HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHH
Q 027392 105 ----CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 150 (224)
Q Consensus 105 ----~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~ 150 (224)
+++++++|.|||++||+++++..+||+++ ++.+|+++..++++.
T Consensus 442 l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~--~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 442 IYQLIRSIAAQNVAVLFISSDLEEIEQMADRVL--VMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEEcccc
Confidence 44555678999999999999999999997 445677777766654
No 250
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.9e-25 Score=187.88 Aligned_cols=148 Identities=14% Similarity=0.089 Sum_probs=104.7
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc----CCCeEEEEc---------------------CCCcccCCCCcc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVIVD---------------------TSNEIGGDGDIP 57 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~----~~~~i~~~~---------------------~~~~~~~~~~~~ 57 (224)
+-.+++|++++|+|+||||||||+|+|+|+++++ ..|.+.+.+ +...+.. ....
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~ 105 (259)
T PRK14260 27 SMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIY 105 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHH
Confidence 3468999999999999999999999999998752 145555422 1111100 0000
Q ss_pred cch-------------------hhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH
Q 027392 58 HSA-------------------IGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104 (224)
Q Consensus 58 ~~~-------------------~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~ 104 (224)
.+. ....+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 106 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 185 (259)
T PRK14260 106 ENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIA 185 (259)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 000 00011222 236899999999999999999999999999999543
Q ss_pred -------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccC----CeeEEEcCCHHHHHH
Q 027392 105 -------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIG----GVDTVTLGDEEARAR 153 (224)
Q Consensus 105 -------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~----~~~~v~~~~~~~~~~ 153 (224)
+.++++ +.|+|++||+++++..+||+++. +.. +|+++..+++.....
T Consensus 186 ~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~-l~~~~~~~G~i~~~~~~~~~~~ 243 (259)
T PRK14260 186 TMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAF-FSTDESRIGQMVEFGVTTQIFS 243 (259)
T ss_pred HHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEE-EeccCCCCceEEEeCCHHHHhc
Confidence 333433 58999999999999999999974 542 478888888877643
No 251
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2e-25 Score=206.38 Aligned_cols=143 Identities=18% Similarity=0.125 Sum_probs=102.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE--------------------cCCC---cccCCC-----
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV--------------------DTSN---EIGGDG----- 54 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~--------------------~~~~---~~~~~~----- 54 (224)
+-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+. .|.. .+....
T Consensus 283 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~ 361 (510)
T PRK09700 283 SFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA-GGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQN 361 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC-CCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHH
Confidence 3478999999999999999999999999999887 5665542 2210 000000
Q ss_pred -Ccc----------------c-c----hhhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHh
Q 027392 55 -DIP----------------H-S----AIGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 101 (224)
Q Consensus 55 -~~~----------------~-~----~~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD 101 (224)
.+. . . .....+.+++ .|+||+||++||++++.+|++|||||||++||
T Consensus 362 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD 441 (510)
T PRK09700 362 MAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGID 441 (510)
T ss_pred hccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcC
Confidence 000 0 0 0001122333 36999999999999999999999999999999
Q ss_pred HH-------HHHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCH
Q 027392 102 AH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 148 (224)
Q Consensus 102 ~~-------~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~ 148 (224)
.. .+++++++|.|||++||+.+++..+||+++. + .+|+++..+++
T Consensus 442 ~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~-l-~~G~i~~~~~~ 493 (510)
T PRK09700 442 VGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAV-F-CEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEE-E-ECCEEEEEecC
Confidence 54 3445556789999999999999999999974 4 45666665433
No 252
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=207.78 Aligned_cols=144 Identities=15% Similarity=0.124 Sum_probs=103.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCc-cCCCeEEEE--------------------cCCCc---ccCCCC----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSD-EFQKRVVIV--------------------DTSNE---IGGDGD---- 55 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~-~~~~~i~~~--------------------~~~~~---~~~~~~---- 55 (224)
-.|++|++++|+||||||||||+|+|+|+++| + .|.|.+. .|... +.....
T Consensus 283 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~ 361 (506)
T PRK13549 283 FSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW-EGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKN 361 (506)
T ss_pred eEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC-CcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHH
Confidence 37899999999999999999999999999984 5 4655542 22110 000000
Q ss_pred --------cc-----cc------hhhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027392 56 --------IP-----HS------AIGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 56 --------~~-----~~------~~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
+. .. .....+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 362 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~ 441 (506)
T PRK13549 362 ITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAK 441 (506)
T ss_pred hhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHH
Confidence 00 00 0001122222 36999999999999999999999999999999543
Q ss_pred ------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHH
Q 027392 105 ------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 150 (224)
Q Consensus 105 ------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~ 150 (224)
+.+++++|.|||++||+++++..+||+++ ++.+|+++..++++.
T Consensus 442 ~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~--~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 442 YEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVL--VMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEecccc
Confidence 44556678999999999999999999997 445567776655543
No 253
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=2.2e-25 Score=183.08 Aligned_cols=130 Identities=19% Similarity=0.133 Sum_probs=93.4
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC---------cccCC---------CCcccch----
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN---------EIGGD---------GDIPHSA---- 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~---------~~~~~---------~~~~~~~---- 60 (224)
+-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+..- .+++. ....++.
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~ 99 (204)
T PRK13538 21 SFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD-AGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQ 99 (204)
T ss_pred eEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHH
Confidence 3468999999999999999999999999999987 67766532110 00000 0000000
Q ss_pred -----------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcC
Q 027392 61 -----------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERG 112 (224)
Q Consensus 61 -----------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g 112 (224)
....+.+++ .|+||+||++||++++.+|+++||||||++||... ++++++++
T Consensus 100 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 179 (204)
T PRK13538 100 RLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQG 179 (204)
T ss_pred HhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCC
Confidence 001122222 36999999999999999999999999999999653 34445568
Q ss_pred CEEEEEEeCcchHHhhcccee
Q 027392 113 VMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 113 ~tvi~~tH~~~~~~~~~d~v~ 133 (224)
.|+|++||+.++...+..+++
T Consensus 180 ~tiii~sh~~~~i~~~~~~~~ 200 (204)
T PRK13538 180 GMVILTTHQDLPVASDKVRKL 200 (204)
T ss_pred CEEEEEecChhhhccCCceEE
Confidence 899999999998887666664
No 254
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.93 E-value=1.3e-25 Score=207.17 Aligned_cols=144 Identities=17% Similarity=0.123 Sum_probs=104.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE--------------------cCCC---cccCCCCc----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV--------------------DTSN---EIGGDGDI---- 56 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~--------------------~~~~---~~~~~~~~---- 56 (224)
-.|.+|++++|+||||||||||+|+|+|+++|+ .|.|.+. .|.. .+.....+
T Consensus 273 l~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~-~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 351 (501)
T PRK10762 273 FTLRKGEILGVSGLMGAGRTELMKVLYGALPRT-SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENM 351 (501)
T ss_pred EEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHh
Confidence 368999999999999999999999999999887 5665542 2221 00000000
Q ss_pred ---------------cc-c----hhhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH--
Q 027392 57 ---------------PH-S----AIGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-- 103 (224)
Q Consensus 57 ---------------~~-~----~~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-- 103 (224)
.. . .....+.+++ .|+||+||++||++++.+|++|||||||++||..
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~ 431 (501)
T PRK10762 352 SLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAK 431 (501)
T ss_pred hhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHH
Confidence 00 0 0001122333 2699999999999999999999999999999954
Q ss_pred -----HHHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHH
Q 027392 104 -----ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 150 (224)
Q Consensus 104 -----~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~ 150 (224)
.++++.++|.|||++||+++++..+||+++ ++.+|+++..++++.
T Consensus 432 ~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~--~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 432 KEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRIL--VMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEE--EEECCEEEEEecccc
Confidence 345556678999999999999999999997 445567776655544
No 255
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.4e-25 Score=191.91 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=103.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCC-----ccCCCeEEE---------------------EcCCCcccCC----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQKRVVI---------------------VDTSNEIGGD---- 53 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~-----~~~~~~i~~---------------------~~~~~~~~~~---- 53 (224)
-.|++|++++|+|+||||||||+++|+|+++ |+ .|.|.+ +.+...+...
T Consensus 66 ~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~-~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~e 144 (305)
T PRK14264 66 MDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARI-DGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRE 144 (305)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC-ceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHH
Confidence 3688999999999999999999999999985 33 454443 2222111000
Q ss_pred -CCcc--------------------cc-----hhhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEE
Q 027392 54 -GDIP--------------------HS-----AIGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIV 93 (224)
Q Consensus 54 -~~~~--------------------~~-----~~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llil 93 (224)
..+. .. .....+.++ -.|+||+||++||++|+.+|++|||
T Consensus 145 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLL 224 (305)
T PRK14264 145 NISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILM 224 (305)
T ss_pred HHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0000 00 000011111 2479999999999999999999999
Q ss_pred eCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 94 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 94 DEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
||||++||... ++++++ +.|+|++||+.+++..+||+++. ++.+|+++..++++....
T Consensus 225 DEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~-~l~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 225 DEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQTAV-FLTGGELVEYDDTDKIFE 289 (305)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEE-EecCCEEEEeCCHHHHHh
Confidence 99999999643 334444 48999999999999999999743 556678888888776543
No 256
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.93 E-value=5.1e-25 Score=188.89 Aligned_cols=146 Identities=14% Similarity=0.134 Sum_probs=104.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC---------C
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD---------G 54 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~---------~ 54 (224)
+-.|++||+++|+||||||||||+++|+|++. . .|.|.+ +.+...++.. .
T Consensus 24 sl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~-~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~ 101 (275)
T cd03289 24 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T-EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYG 101 (275)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C-CcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhcc
Confidence 34789999999999999999999999999997 4 465554 2222211100 0
Q ss_pred Cccc-chhhHHhHcC---------------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHH----H
Q 027392 55 DIPH-SAIGTARRMQ---------------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----I 108 (224)
Q Consensus 55 ~~~~-~~~~~~~~~~---------------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~----~ 108 (224)
.... ......+.++ ..|+||+||++||+|++.+|++|||||||++||...... +
T Consensus 102 ~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l 181 (275)
T cd03289 102 KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTL 181 (275)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 0000 0001111111 157899999999999999999999999999999654322 2
Q ss_pred H--HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 109 A--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 109 ~--~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
. ..++|||++||+++.+. .||+++ ++.+|+++..++++.+..
T Consensus 182 ~~~~~~~tii~isH~~~~i~-~~dri~--vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 182 KQAFADCTVILSEHRIEAML-ECQRFL--VIEENKVRQYDSIQKLLN 225 (275)
T ss_pred HHhcCCCEEEEEECCHHHHH-hCCEEE--EecCCeEeecCCHHHHhh
Confidence 2 24789999999998776 499997 556788999999988765
No 257
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.93 E-value=2.3e-25 Score=185.66 Aligned_cols=128 Identities=16% Similarity=0.291 Sum_probs=92.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCCCCcccc-----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGDGDIPHS----- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~~~~~~~----- 59 (224)
-.+++||+++|+||||||||||+++|+|+.+|+ .|.+.+.+ +...+... .+.++
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~ 105 (225)
T PRK10247 28 FSLRAGEFKLITGPSGCGKSTLLKIVASLISPT-SGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPW 105 (225)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCeEEECCEEcCcCCHHHHHhccEEEecccccccc-cHHHHHHhHH
Confidence 368999999999999999999999999999887 56655432 11111000 00000
Q ss_pred -----------hhhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH
Q 027392 60 -----------AIGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE 110 (224)
Q Consensus 60 -----------~~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~ 110 (224)
.....+.+++ .|+||+||++||++++.+|+++||||||++||... +.++.+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 185 (225)
T PRK10247 106 QIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVR 185 (225)
T ss_pred hhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0011222222 36899999999999999999999999999999653 334443
Q ss_pred -cCCEEEEEEeCcchHHhhccceee
Q 027392 111 -RGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 111 -~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
.|.|||++||+.++.. .||+++.
T Consensus 186 ~~~~tvii~sh~~~~~~-~~d~i~~ 209 (225)
T PRK10247 186 EQNIAVLWVTHDKDEIN-HADKVIT 209 (225)
T ss_pred hcCCEEEEEECChHHHH-hCCEEEE
Confidence 4889999999998886 6999975
No 258
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.93 E-value=1.1e-24 Score=187.35 Aligned_cols=145 Identities=10% Similarity=0.022 Sum_probs=104.1
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCe------EEEEcCCCcccCC---------CCccc-chhhHH---
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR------VVIVDTSNEIGGD---------GDIPH-SAIGTA--- 64 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~------i~~~~~~~~~~~~---------~~~~~-~~~~~~--- 64 (224)
-.|++|++++|+||||||||||+++|+|+++|+ .|. +.|+.+...+... ..... ......
T Consensus 58 ~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~-~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~ 136 (282)
T cd03291 58 LKIEKGEMLAITGSTGSGKTSLLMLILGELEPS-EGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKAC 136 (282)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHh
Confidence 368999999999999999999999999999887 454 4455554332211 00000 000000
Q ss_pred ------hH------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH---H-H---HHcCCEEEEEE
Q 027392 65 ------RR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S-I---AERGVMLIGTA 119 (224)
Q Consensus 65 ------~~------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~---~-~---~~~g~tvi~~t 119 (224)
.. ..-.|+||+||++||++++.+|++|||||||++||+.... + + ..++.|||++|
T Consensus 137 ~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiis 216 (282)
T cd03291 137 QLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVT 216 (282)
T ss_pred CCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence 00 1235799999999999999999999999999999965422 1 1 13478999999
Q ss_pred eCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 120 HGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 120 H~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
|+..+.. .||+++ ++.+|+++..++.....
T Consensus 217 H~~~~~~-~~d~i~--~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 217 SKMEHLK-KADKIL--ILHEGSSYFYGTFSELQ 246 (282)
T ss_pred CChHHHH-hCCEEE--EEECCEEEEECCHHHHH
Confidence 9998774 799997 45667788888876654
No 259
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.1e-25 Score=193.93 Aligned_cols=147 Identities=15% Similarity=0.115 Sum_probs=106.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCc-----cCCCeEE---------------------EEcCCCcccCCCCcc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKRVV---------------------IVDTSNEIGGDGDIP 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~-----~~~~~i~---------------------~~~~~~~~~~~~~~~ 57 (224)
-.|++|++++|+||||||||||+++|+|+..+ + .|.|. |+.+.+.++. ..+.
T Consensus 103 ~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~-~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~ 180 (329)
T PRK14257 103 LDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH-EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIF 180 (329)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC-ceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHH
Confidence 46899999999999999999999999999853 3 34443 3333222111 0000
Q ss_pred --------------cch-----hhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH
Q 027392 58 --------------HSA-----IGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 104 (224)
Q Consensus 58 --------------~~~-----~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~ 104 (224)
... ....+..+ -.|+||+||++||||++.+|++|||||||++||...
T Consensus 181 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~ 260 (329)
T PRK14257 181 DNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260 (329)
T ss_pred HHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 000 00011222 136999999999999999999999999999999653
Q ss_pred -------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHh
Q 027392 105 -------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 155 (224)
Q Consensus 105 -------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~ 155 (224)
++++.+ +.|+|++||+++.+..+||+++ ++.+|+++..|++..++..+
T Consensus 261 ~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Drii--vl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 261 TAKIEELILELKK-KYSIIIVTHSMAQAQRISDETV--FFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred HHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhcCC
Confidence 333333 6899999999999999999997 55668899999999877544
No 260
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.7e-25 Score=189.25 Aligned_cols=146 Identities=18% Similarity=0.136 Sum_probs=103.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc----CCCeEEE--------------------EcCCCcccCCCCccc-
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVI--------------------VDTSNEIGGDGDIPH- 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~----~~~~i~~--------------------~~~~~~~~~~~~~~~- 58 (224)
-.|++||+++|+||||||||||+++|+|+++|. ..|.|.+ +.+...+.. .....
T Consensus 42 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 120 (276)
T PRK14271 42 MGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDN 120 (276)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHH
Confidence 368899999999999999999999999999751 2455543 222111110 00000
Q ss_pred --------------ch----hhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH--
Q 027392 59 --------------SA----IGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-- 104 (224)
Q Consensus 59 --------------~~----~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-- 104 (224)
.. ....+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~ 200 (276)
T PRK14271 121 VLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTE 200 (276)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 00 00011222 246899999999999999999999999999999653
Q ss_pred -----HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 -----CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 -----~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+.++++ +.|||++||+.++...+||+++ ++.+|+++..++++....
T Consensus 201 ~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~--~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 201 KIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAA--LFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHh
Confidence 333433 5899999999998899999997 445577888888776543
No 261
>PRK13409 putative ATPase RIL; Provisional
Probab=99.93 E-value=2.7e-25 Score=208.31 Aligned_cols=129 Identities=22% Similarity=0.263 Sum_probs=96.2
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE------EEcCCCcccCCCCcccc-------------hhhHHh
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------IVDTSNEIGGDGDIPHS-------------AIGTAR 65 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~------~~~~~~~~~~~~~~~~~-------------~~~~~~ 65 (224)
.+.+||+++|+||||||||||+|+|+|+++|+ .|.+. |+.|.........+.+. .....+
T Consensus 361 ~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~-~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~ 439 (590)
T PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD-EGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIK 439 (590)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHH
Confidence 57899999999999999999999999999988 56553 44443221111010000 001112
Q ss_pred HcC----------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-cCCEEEEEEeCcchHHh
Q 027392 66 RMQ----------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENI 127 (224)
Q Consensus 66 ~~~----------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~-~g~tvi~~tH~~~~~~~ 127 (224)
.++ -.|+||+||++||++++.+|++|||||||++||... ++++++ .|.|+|++||+.+++..
T Consensus 440 ~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~ 519 (590)
T PRK13409 440 PLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDY 519 (590)
T ss_pred HCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 222 247999999999999999999999999999999543 445544 48999999999999999
Q ss_pred hccceee
Q 027392 128 IKNPILS 134 (224)
Q Consensus 128 ~~d~v~~ 134 (224)
+||+++.
T Consensus 520 ~aDrviv 526 (590)
T PRK13409 520 ISDRLMV 526 (590)
T ss_pred hCCEEEE
Confidence 9999974
No 262
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=4.1e-25 Score=203.59 Aligned_cols=147 Identities=16% Similarity=0.207 Sum_probs=105.8
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCe--------EEEEcCCCcccCCCCccc----------------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR--------VVIVDTSNEIGGDGDIPH---------------- 58 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~--------i~~~~~~~~~~~~~~~~~---------------- 58 (224)
+-.+.+|+.+||+|+||||||||||+|+|.+.|+ .|. +.++.|.........+..
T Consensus 23 ~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~-~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~ 101 (530)
T COG0488 23 SLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD-SGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAEL 101 (530)
T ss_pred cceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC-CCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHH
Confidence 4478999999999999999999999999999887 454 455555433221100000
Q ss_pred --------------------------------chhhHH---------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCC
Q 027392 59 --------------------------------SAIGTA---------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 97 (224)
Q Consensus 59 --------------------------------~~~~~~---------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~ 97 (224)
...... ..+.-.|||++.|++||++|..+||+|+|||||
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPT 181 (530)
T COG0488 102 EEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPT 181 (530)
T ss_pred HHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 000000 112224799999999999999999999999999
Q ss_pred ChHhHHHHH----HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 98 TEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 98 ~~lD~~~~~----~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++||.+.+. .+++...|+|++|||..+.+.+|++++. +.. +++..+.+....+
T Consensus 182 NHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~-ld~-g~l~~y~Gny~~~ 238 (530)
T COG0488 182 NHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILE-LDR-GKLTPYKGNYSSY 238 (530)
T ss_pred cccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEE-ecC-CceeEecCCHHHH
Confidence 999987654 3344444999999999999999999985 655 4555554444444
No 263
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.93 E-value=4.2e-25 Score=187.53 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=94.7
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE-----------EEcCCC----------c--ccC----CCCcc
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-----------IVDTSN----------E--IGG----DGDIP 57 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~-----------~~~~~~----------~--~~~----~~~~~ 57 (224)
.+.+|++++|+||||||||||+|+|+|+++|+ .|.|. +.+..- . +.+ ....+
T Consensus 22 ~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~-~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 100 (255)
T cd03236 22 VPREGQVLGLVGPNGIGKSTALKILAGKLKPN-LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIP 100 (255)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC-CceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCc
Confidence 57899999999999999999999999999998 67774 211110 0 000 00000
Q ss_pred c-----------------chhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH------
Q 027392 58 H-----------------SAIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------ 104 (224)
Q Consensus 58 ~-----------------~~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------ 104 (224)
. ......+.+++ .|+||+||+++|++++.+|+++|+||||++||...
T Consensus 101 ~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~ 180 (255)
T cd03236 101 KAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAAR 180 (255)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHH
Confidence 0 00001122322 36899999999999999999999999999999653
Q ss_pred -HHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 105 -CRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 105 -~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
++++++++.|||++||++++...+||+++.
T Consensus 181 ~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~ 211 (255)
T cd03236 181 LIRELAEDDNYVLVVEHDLAVLDYLSDYIHC 211 (255)
T ss_pred HHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 345555689999999999989889999964
No 264
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.7e-25 Score=186.56 Aligned_cols=143 Identities=14% Similarity=0.094 Sum_probs=106.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCCccCCCeE-----------------------EEEcCCCcccCCCCcccchhh----
Q 027392 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRV-----------------------VIVDTSNEIGGDGDIPHSAIG---- 62 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i-----------------------~~~~~~~~~~~~~~~~~~~~~---- 62 (224)
.+++|.|++|||||||+|+|+|+++|+ .|.| .|++|+..++....+..+...
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPd-eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~ 103 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPD-EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWK 103 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCcc-ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhcc
Confidence 699999999999999999999999998 4444 333333333222111111100
Q ss_pred -----------------HHhHc-CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhH-------HHHHHHH-HcCCEEE
Q 027392 63 -----------------TARRM-QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIA-ERGVMLI 116 (224)
Q Consensus 63 -----------------~~~~~-~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~-------~~~~~~~-~~g~tvi 116 (224)
...++ .-.|||++||++|+|||+..|++|+||||.+.||. -.++.+. +....|+
T Consensus 104 ~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIl 183 (352)
T COG4148 104 SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPIL 183 (352)
T ss_pred cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEE
Confidence 01111 22479999999999999999999999999999993 2345555 4478999
Q ss_pred EEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHh
Q 027392 117 GTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 155 (224)
Q Consensus 117 ~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~ 155 (224)
++||.+++..++||+++ ++..|++...|..++.+...
T Consensus 184 YVSHS~~Ev~RLAd~vV--~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 184 YVSHSLDEVLRLADRVV--VLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred EEecCHHHHHhhhheEE--EecCCeEEecCcHHHHhcCc
Confidence 99999999999999997 67778888898888877544
No 265
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.93 E-value=4.1e-25 Score=226.44 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=109.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC---------cccCCC---------C---------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN---------EIGGDG---------D--------- 55 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~---------~~~~~~---------~--------- 55 (224)
+-.|++||+++|+||||||||||+|+|+|+++|+ .|.+.+.+.+- .+++.. .
T Consensus 1959 Sf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt-sG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a 2037 (2272)
T TIGR01257 1959 CVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT-SGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYA 2037 (2272)
T ss_pred EEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHH
Confidence 3468999999999999999999999999999988 57665532110 011100 0
Q ss_pred ----cccchh-----hHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH
Q 027392 56 ----IPHSAI-----GTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA 109 (224)
Q Consensus 56 ----~~~~~~-----~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~ 109 (224)
.+.... ...+.+++ .|+|||||+++|+|++.+|++|||||||+|||+.. +.+++
T Consensus 2038 ~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~ 2117 (2272)
T TIGR01257 2038 RLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII 2117 (2272)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 000000 01122222 37999999999999999999999999999999653 44556
Q ss_pred HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 110 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 110 ~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++|+|||+|||++++++.+||+++ ++.+|+++..|++..+.
T Consensus 2118 ~~g~TIILtTH~mee~e~lcDrV~--IL~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257 2118 REGRAVVLTSHSMEECEALCTRLA--IMVKGAFQCLGTIQHLK 2158 (2272)
T ss_pred hCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHH
Confidence 678999999999999999999997 56668888888877654
No 266
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=6.6e-25 Score=204.88 Aligned_cols=144 Identities=14% Similarity=0.174 Sum_probs=102.7
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeE--------EEEcCCCcccCCCCcccch--------------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV--------VIVDTSNEIGGDGDIPHSA-------------- 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i--------~~~~~~~~~~~~~~~~~~~-------------- 60 (224)
+-.|++|++++|+||||||||||+|+|+|+++|+ .|.| .|+.|...+........+.
T Consensus 27 s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~-~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 105 (556)
T PRK11819 27 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF-EGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRF 105 (556)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 3478999999999999999999999999999887 4554 3444443221110000000
Q ss_pred ----------------------------------------hhHHhHcC---------CCCccHHHHHHHHHHHhcCCCEE
Q 027392 61 ----------------------------------------IGTARRMQ---------VPEPSLQHKVMIEAVENHMPEVI 91 (224)
Q Consensus 61 ----------------------------------------~~~~~~~~---------~~~~g~~qr~~la~al~~~p~ll 91 (224)
....+.++ -.|+||+||++||++++.+|++|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vl 185 (556)
T PRK11819 106 NEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDML 185 (556)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEE
Confidence 00011122 24799999999999999999999
Q ss_pred EEeCCCChHhHHHHH----HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEE-EcCCHH
Q 027392 92 IVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV-TLGDEE 149 (224)
Q Consensus 92 ilDEp~~~lD~~~~~----~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v-~~~~~~ 149 (224)
||||||++||..... .+++.+.|||++||+.+++..+||+++. + ++|+++ ..++.+
T Consensus 186 LLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~-l-~~g~i~~~~g~~~ 246 (556)
T PRK11819 186 LLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILE-L-DRGRGIPWEGNYS 246 (556)
T ss_pred EEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEE-E-eCCEEEEecCCHH
Confidence 999999999976543 2344457999999999999999999974 4 445655 445544
No 267
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.5e-25 Score=204.87 Aligned_cols=142 Identities=19% Similarity=0.135 Sum_probs=102.4
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC----C-------cccCC------------CC-----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS----N-------EIGGD------------GD----- 55 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~----~-------~~~~~------------~~----- 55 (224)
-.+++|++++|+||||||||||+|+|+|+++|+ .|.|.+.+.. . .+++. ..
T Consensus 269 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~ 347 (491)
T PRK10982 269 FDLHKGEILGIAGLVGAKRTDIVETLFGIREKS-AGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNS 347 (491)
T ss_pred EEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC-ccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHhe
Confidence 368999999999999999999999999999887 5776653210 0 01000 00
Q ss_pred ----c----------ccch-----hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027392 56 ----I----------PHSA-----IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 56 ----~----------~~~~-----~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
+ .... ....+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~ 427 (491)
T PRK10982 348 LISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAK 427 (491)
T ss_pred ehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHH
Confidence 0 0000 000111222 36999999999999999999999999999999543
Q ss_pred ------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCH
Q 027392 105 ------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 148 (224)
Q Consensus 105 ------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~ 148 (224)
+.++.++|.|||++||+++++..+||+++. + .+|+++...++
T Consensus 428 ~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~-l-~~g~i~~~~~~ 475 (491)
T PRK10982 428 FEIYQLIAELAKKDKGIIIISSEMPELLGITDRILV-M-SNGLVAGIVDT 475 (491)
T ss_pred HHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEE-E-ECCEEEEEEcc
Confidence 445567799999999999999999999974 4 45666655444
No 268
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=6.9e-25 Score=186.95 Aligned_cols=147 Identities=16% Similarity=0.133 Sum_probs=103.6
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCc-----cCCCeEEEE---------------------cCCCcccCCCCc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKRVVIV---------------------DTSNEIGGDGDI 56 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~-----~~~~~i~~~---------------------~~~~~~~~~~~~ 56 (224)
+-.|++|++++|+||||||||||+++|+|++.+ + .|.+.+. .+...+... .+
T Consensus 30 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~-~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv 107 (264)
T PRK14243 30 WLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRV-EGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SI 107 (264)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCC-ceEEEECCEEccccccChHHHhhhEEEEccCCccccc-cH
Confidence 346899999999999999999999999998752 3 4555432 111111000 00
Q ss_pred cc-------------ch---h-hHHhHc--------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027392 57 PH-------------SA---I-GTARRM--------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 57 ~~-------------~~---~-~~~~~~--------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
.+ .. . ...+.+ .-.|+||+||++||++++.+|++|||||||++||...
T Consensus 108 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 187 (264)
T PRK14243 108 YDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPIST 187 (264)
T ss_pred HHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 00 00 0 001111 1147999999999999999999999999999999654
Q ss_pred ------HHHHHHcCCEEEEEEeCcchHHhhccceeeecc--------CCeeEEEcCCHHHHHH
Q 027392 105 ------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLI--------GGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 ------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~--------~~~~~v~~~~~~~~~~ 153 (224)
+.++.+ +.|||++||+.+++..+||+++. |. +.|+++..+.+.....
T Consensus 188 ~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~-l~~~~~~~~~~~g~i~~~~~~~~~~~ 248 (264)
T PRK14243 188 LRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAF-FNVELTEGGGRYGYLVEFDRTEKIFN 248 (264)
T ss_pred HHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEE-EecccccccccCceEEEeCCHHHHHh
Confidence 333433 58999999999999999999974 54 2578888888777653
No 269
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=3.6e-25 Score=204.14 Aligned_cols=141 Identities=18% Similarity=0.144 Sum_probs=100.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCc-cCCCeEEEEc--------------------CCCc---ccCC------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSD-EFQKRVVIVD--------------------TSNE---IGGD------ 53 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~-~~~~~i~~~~--------------------~~~~---~~~~------ 53 (224)
-.|.+|++++|+||||||||||+|+|+|+++| + .|.|.+.+ |... +...
T Consensus 281 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~ 359 (500)
T TIGR02633 281 FSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKN 359 (500)
T ss_pred eEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC-CeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHH
Confidence 36899999999999999999999999999985 4 46655422 1110 0000
Q ss_pred ---CC---c------ccc-----hhhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027392 54 ---GD---I------PHS-----AIGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 54 ---~~---~------~~~-----~~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
.. . ... .....+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~ 439 (500)
T TIGR02633 360 ITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAK 439 (500)
T ss_pred hcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHH
Confidence 00 0 000 0001122222 36999999999999999999999999999999543
Q ss_pred ------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCC
Q 027392 105 ------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 147 (224)
Q Consensus 105 ------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~ 147 (224)
+.+++++|.|||++||+++++..+||+++. + .+|+++...+
T Consensus 440 ~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~-l-~~G~i~~~~~ 486 (500)
T TIGR02633 440 YEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLV-I-GEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE-E-ECCEEEEEEc
Confidence 445666789999999999999999999974 4 4466665443
No 270
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.92 E-value=5.6e-25 Score=182.41 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=96.1
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-------------------cCCCcccCC---------CC
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-------------------DTSNEIGGD---------GD 55 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-------------------~~~~~~~~~---------~~ 55 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+. .+...+... ..
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~ 103 (221)
T cd03244 25 FSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS-SGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE 103 (221)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCC
Confidence 468999999999999999999999999999887 5665542 221111100 00
Q ss_pred ccc-chhh---------HH------------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH-------H
Q 027392 56 IPH-SAIG---------TA------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------R 106 (224)
Q Consensus 56 ~~~-~~~~---------~~------------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~-------~ 106 (224)
... .... .. ....-.|+||+||++||++++.+|+++||||||++||.... +
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 183 (221)
T cd03244 104 YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR 183 (221)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 000 0000 00 11223479999999999999999999999999999996543 2
Q ss_pred HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcC
Q 027392 107 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 146 (224)
Q Consensus 107 ~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~ 146 (224)
++. ++.|+|++||+..+... ||+++. + .+|+++..+
T Consensus 184 ~~~-~~~tii~~sh~~~~~~~-~d~i~~-l-~~g~~~~~~ 219 (221)
T cd03244 184 EAF-KDCTVLTIAHRLDTIID-SDRILV-L-DKGRVVEFD 219 (221)
T ss_pred Hhc-CCCEEEEEeCCHHHHhh-CCEEEE-E-ECCeEEecC
Confidence 332 36899999999987765 899873 4 445655543
No 271
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.92 E-value=6.5e-25 Score=203.78 Aligned_cols=146 Identities=16% Similarity=0.224 Sum_probs=104.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE----------------------cCCCc--ccCCCCc--
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV----------------------DTSNE--IGGDGDI-- 56 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~----------------------~~~~~--~~~~~~~-- 56 (224)
+-.|++|++++|+||||||||||+|+|+|+++ + .|.|.+. .|... +.....+
T Consensus 306 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~-~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e 383 (529)
T PRK15134 306 SFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S-QGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQ 383 (529)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C-CcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHH
Confidence 34789999999999999999999999999985 4 4655542 22110 0000000
Q ss_pred -------------ccc-----hhhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---
Q 027392 57 -------------PHS-----AIGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 104 (224)
Q Consensus 57 -------------~~~-----~~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~--- 104 (224)
... .....+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 384 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 463 (529)
T PRK15134 384 IIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQ 463 (529)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHH
Confidence 000 0001122222 36999999999999999999999999999999643
Q ss_pred ----HHHHHHc-CCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 ----CRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 ----~~~~~~~-g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+++++++ |.|||++||+++++..+||+++ ++.+|+++..++.+...
T Consensus 464 l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 464 ILALLKSLQQKHQLAYLFISHDLHVVRALCHQVI--VLRQGEVVEQGDCERVF 514 (529)
T ss_pred HHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEE--EEECCEEEEEcCHHHHh
Confidence 4455544 8999999999999999999997 44557788887776654
No 272
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.92 E-value=1.7e-24 Score=183.79 Aligned_cols=145 Identities=12% Similarity=0.093 Sum_probs=102.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC-----CCcc--
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD-----GDIP-- 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~-----~~~~-- 57 (224)
-.+++|++++|+|+||||||||+++|+|+++|+ .|.+.+ +.+...+... ....
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~ 120 (257)
T cd03288 42 AYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF-DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECK 120 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC-CCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCC
Confidence 368899999999999999999999999999887 565554 2222111100 0000
Q ss_pred --c-chhhH---------HhHc------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHHH----H
Q 027392 58 --H-SAIGT---------ARRM------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI----A 109 (224)
Q Consensus 58 --~-~~~~~---------~~~~------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~~----~ 109 (224)
. ..... ...+ .-.|+||+||++||++++.+|++|||||||++||......+ .
T Consensus 121 ~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~ 200 (257)
T cd03288 121 CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVM 200 (257)
T ss_pred CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 0 00000 0111 23478999999999999999999999999999996543221 1
Q ss_pred --HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 110 --ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 110 --~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
.++.|+|++||+++.... ||+++ ++++|+++..++++...
T Consensus 201 ~~~~~~tiii~sh~~~~~~~-~dri~--~l~~G~i~~~g~~~~~~ 242 (257)
T cd03288 201 TAFADRTVVTIAHRVSTILD-ADLVL--VLSRGILVECDTPENLL 242 (257)
T ss_pred HhcCCCEEEEEecChHHHHh-CCEEE--EEECCEEEEeCCHHHHH
Confidence 247899999999988775 99997 44567788887776554
No 273
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=9.7e-25 Score=186.04 Aligned_cols=145 Identities=14% Similarity=0.185 Sum_probs=102.6
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc----CCCeEEEEcCCC--------------cccCCC--------Cccc
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVIVDTSN--------------EIGGDG--------DIPH 58 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~----~~~~i~~~~~~~--------------~~~~~~--------~~~~ 58 (224)
.|++||+++|+|+||||||||+++|+|++.|. ..|.|.+..... .+++.. .+.+
T Consensus 38 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 117 (265)
T PRK14252 38 MVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFE 117 (265)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcchHHH
Confidence 68999999999999999999999999998741 145555421110 011000 0000
Q ss_pred c--------------h-----hhHHhHcC--------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027392 59 S--------------A-----IGTARRMQ--------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 59 ~--------------~-----~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
+ . ....+.++ -.|+||+||++||++++.+|++|||||||++||...
T Consensus 118 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~ 197 (265)
T PRK14252 118 NVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIAT 197 (265)
T ss_pred HHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHH
Confidence 0 0 00011111 246899999999999999999999999999999654
Q ss_pred ------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 ------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 ------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.++++ +.|+|++||+.++...+||+++ ++.+|+++..++.+..+
T Consensus 198 ~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 198 ASIEELISDLKN-KVTILIVTHNMQQAARVSDYTA--YMYMGELIEFGATDTIF 248 (265)
T ss_pred HHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHH
Confidence 333433 6899999999999989999997 44667788888877655
No 274
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=205.88 Aligned_cols=140 Identities=13% Similarity=0.143 Sum_probs=100.6
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE--------EcCCCcccCC---CCccc-------------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--------VDTSNEIGGD---GDIPH------------- 58 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~--------~~~~~~~~~~---~~~~~------------- 58 (224)
+-.|++|++++|+||||||||||||+|+|+++|+ .|.|.+ +.+....... ..+..
T Consensus 21 s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd-~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 99 (638)
T PRK10636 21 TATINPGQKVGLVGKNGCGKSTLLALLKNEISAD-GGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLH 99 (638)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHH
Confidence 3478999999999999999999999999999887 576654 2221100000 00000
Q ss_pred ----------------------------chhhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCCh
Q 027392 59 ----------------------------SAIGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTE 99 (224)
Q Consensus 59 ----------------------------~~~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~ 99 (224)
........+++ .|+||+||++||++|+.+|++|||||||++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~ 179 (638)
T PRK10636 100 DANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNH 179 (638)
T ss_pred HHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCc
Confidence 00001122333 369999999999999999999999999999
Q ss_pred HhHHHHHH----HHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEc
Q 027392 100 AEAHACRS----IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 145 (224)
Q Consensus 100 lD~~~~~~----~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~ 145 (224)
||...... +.+.+.|||++||+..+...+|++++. | ++|+++.+
T Consensus 180 LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~-L-~~G~i~~~ 227 (638)
T PRK10636 180 LDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIH-I-EQQSLFEY 227 (638)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEE-E-eCCEEEEe
Confidence 99765433 345578999999999999999999974 4 45666543
No 275
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.92 E-value=8.1e-25 Score=181.59 Aligned_cols=129 Identities=16% Similarity=0.273 Sum_probs=92.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc----------------------CCCcccCCCCcccc--
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD----------------------TSNEIGGDGDIPHS-- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~----------------------~~~~~~~~~~~~~~-- 59 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.|.+.+ +...+.......++
T Consensus 26 ~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~ 104 (220)
T TIGR02982 26 LEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ-EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQ 104 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHH
Confidence 368999999999999999999999999999887 56655421 11111110000000
Q ss_pred -----------------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 60 -----------------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 60 -----------------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
.....+.+++ .|+||+||++||++++.+|++||||||+++||... +
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l 184 (220)
T TIGR02982 105 MALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELM 184 (220)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 0001122222 36899999999999999999999999999999654 3
Q ss_pred HHHHH-cCCEEEEEEeCcchHHhhccceee
Q 027392 106 RSIAE-RGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 106 ~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
+++++ .+.|+|++||+++.. .+||+++.
T Consensus 185 ~~~~~~~~~tii~~sh~~~~~-~~~d~v~~ 213 (220)
T TIGR02982 185 QKLAREQGCTILIVTHDNRIL-DVADRIVH 213 (220)
T ss_pred HHHHHHcCCEEEEEeCCHHHH-hhCCEEEE
Confidence 44444 489999999999854 68999974
No 276
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=1e-24 Score=179.53 Aligned_cols=127 Identities=18% Similarity=0.163 Sum_probs=90.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-------cccCC---------CCcccc--------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-------EIGGD---------GDIPHS-------- 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-------~~~~~---------~~~~~~-------- 59 (224)
-.|++|++++|+||||||||||+++|+|+.+|+ .|.|.+.+... .+++. ....++
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~ 101 (207)
T PRK13539 23 FTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA-AGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL 101 (207)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc
Confidence 368899999999999999999999999999887 57776532110 01100 000000
Q ss_pred ------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCEEE
Q 027392 60 ------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLI 116 (224)
Q Consensus 60 ------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi 116 (224)
.....+.+++ .|+||+||++||++++.+|++|||||||++||... +.+++++|.|+|
T Consensus 102 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii 181 (207)
T PRK13539 102 GGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVI 181 (207)
T ss_pred CCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 0001112222 36999999999999999999999999999999543 344556689999
Q ss_pred EEEeCcchHHhhcccee
Q 027392 117 GTAHGEWLENIIKNPIL 133 (224)
Q Consensus 117 ~~tH~~~~~~~~~d~v~ 133 (224)
++||+.++... ++++
T Consensus 182 i~sH~~~~~~~--~~~~ 196 (207)
T PRK13539 182 AATHIPLGLPG--AREL 196 (207)
T ss_pred EEeCCchhhcc--CcEE
Confidence 99999987765 6664
No 277
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.92 E-value=1.4e-24 Score=179.76 Aligned_cols=129 Identities=11% Similarity=0.121 Sum_probs=91.2
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------------CCCcccCC-------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------------TSNEIGGD------- 53 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------------~~~~~~~~------- 53 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+...
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~ 100 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL-EGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENIT 100 (218)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHHh
Confidence 368899999999999999999999999999887 56655422 11110000
Q ss_pred --CCcccch-hhHHh---------------------HcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-----
Q 027392 54 --GDIPHSA-IGTAR---------------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----- 104 (224)
Q Consensus 54 --~~~~~~~-~~~~~---------------------~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~----- 104 (224)
....... ....+ ...-.|+||+||++||++++.+|++|||||||++||...
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~ 180 (218)
T cd03290 101 FGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLM 180 (218)
T ss_pred hcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHH
Confidence 0000000 00000 112347999999999999999999999999999999653
Q ss_pred ----HHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 105 ----CRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 105 ----~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
++.+++.+.|+|++||+.++.. .||+++.
T Consensus 181 ~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~ 213 (218)
T cd03290 181 QEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIA 213 (218)
T ss_pred HHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEE
Confidence 2233455799999999998775 6998863
No 278
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=202.04 Aligned_cols=146 Identities=20% Similarity=0.258 Sum_probs=103.9
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeE--------EEEcCCCc--ccCCCCccc-------------c
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV--------VIVDTSNE--IGGDGDIPH-------------S 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i--------~~~~~~~~--~~~~~~~~~-------------~ 59 (224)
+-.|++|++++|+||||||||||+|+|+|+++|+ .|.| .|+.+... +........ .
T Consensus 339 s~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~-~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 417 (530)
T PRK15064 339 NLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD-SGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQA 417 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHH
Confidence 3468999999999999999999999999999887 4544 34444321 110000000 0
Q ss_pred hhhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHH----HHHcCCEEEEEEeCcch
Q 027392 60 AIGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEWL 124 (224)
Q Consensus 60 ~~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~----~~~~g~tvi~~tH~~~~ 124 (224)
.....+.+++ .|+||+||++||++++.+|++|||||||++||...... +.+.+.|||++||+.++
T Consensus 418 ~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~ 497 (530)
T PRK15064 418 VRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREF 497 (530)
T ss_pred HHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 0011122222 37999999999999999999999999999999764432 33446799999999999
Q ss_pred HHhhccceeeeccCCeeEE-EcCCHHHH
Q 027392 125 ENIIKNPILSDLIGGVDTV-TLGDEEAR 151 (224)
Q Consensus 125 ~~~~~d~v~~~l~~~~~~v-~~~~~~~~ 151 (224)
+..+||+++. + ++++++ ..++....
T Consensus 498 ~~~~~d~i~~-l-~~g~i~~~~g~~~~~ 523 (530)
T PRK15064 498 VSSLATRIIE-I-TPDGVVDFSGTYEEY 523 (530)
T ss_pred HHHhCCEEEE-E-ECCeEEEcCCCHHHH
Confidence 9999999974 4 445665 55665543
No 279
>PLN03211 ABC transporter G-25; Provisional
Probab=99.92 E-value=1.8e-24 Score=205.02 Aligned_cols=147 Identities=16% Similarity=0.254 Sum_probs=105.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc-CCCeEEE---------------EcCCCcccCCCCc-----------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-FQKRVVI---------------VDTSNEIGGDGDI----------- 56 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~-~~~~i~~---------------~~~~~~~~~~~~~----------- 56 (224)
-.+++||+++|+||||||||||+++|+|.++++ ..|.|.+ +.|...+.....+
T Consensus 89 ~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~ 168 (659)
T PLN03211 89 GMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLR 168 (659)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhC
Confidence 368999999999999999999999999998763 2354443 3332211110000
Q ss_pred -cc-----ch----hhHHhHcCC---------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------H
Q 027392 57 -PH-----SA----IGTARRMQV---------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------A 104 (224)
Q Consensus 57 -~~-----~~----~~~~~~~~~---------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~ 104 (224)
+. .. ....+.+++ .|+||+||++||++++.+|++|+|||||++||.. .
T Consensus 169 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~ 248 (659)
T PLN03211 169 LPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLT 248 (659)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHH
Confidence 00 00 000112222 4799999999999999999999999999999954 3
Q ss_pred HHHHHHcCCEEEEEEeCcc-hHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 CRSIAERGVMLIGTAHGEW-LENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 ~~~~~~~g~tvi~~tH~~~-~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+++++++|.|||+++|+.+ ....++|+++ ++.+|+++..|+.+...
T Consensus 249 L~~l~~~g~TvI~~sH~~~~~i~~~~D~ii--lL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 249 LGSLAQKGKTIVTSMHQPSSRVYQMFDSVL--VLSEGRCLFFGKGSDAM 295 (659)
T ss_pred HHHHHhCCCEEEEEecCCCHHHHHhhceEE--EecCCcEEEECCHHHHH
Confidence 4455667899999999987 4778999997 55667888888887654
No 280
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.92 E-value=2.2e-24 Score=201.16 Aligned_cols=145 Identities=14% Similarity=0.176 Sum_probs=102.7
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeE--------EEEcCCCcccCCCCcccch--------------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV--------VIVDTSNEIGGDGDIPHSA-------------- 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i--------~~~~~~~~~~~~~~~~~~~-------------- 60 (224)
+-.|++|++++|+||||||||||+++|+|+++|+ .|.| .|+.|...+.......+..
T Consensus 25 s~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~-~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~ 103 (552)
T TIGR03719 25 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF-NGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRF 103 (552)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 3478999999999999999999999999999887 4554 3444433221110000000
Q ss_pred -----------h-----------------------------hHHhHc---------CCCCccHHHHHHHHHHHhcCCCEE
Q 027392 61 -----------I-----------------------------GTARRM---------QVPEPSLQHKVMIEAVENHMPEVI 91 (224)
Q Consensus 61 -----------~-----------------------------~~~~~~---------~~~~~g~~qr~~la~al~~~p~ll 91 (224)
. .....+ .-.|+||+||++||++++.+|++|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lL 183 (552)
T TIGR03719 104 NEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDML 183 (552)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 0 000111 224799999999999999999999
Q ss_pred EEeCCCChHhHHHHH----HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEE-EcCCHHH
Q 027392 92 IVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV-TLGDEEA 150 (224)
Q Consensus 92 ilDEp~~~lD~~~~~----~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v-~~~~~~~ 150 (224)
||||||++||..... .+.+.+.|||++||+.++...+||+++. + +.|+++ ..|+.+.
T Consensus 184 LLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~-l-~~g~i~~~~g~~~~ 245 (552)
T TIGR03719 184 LLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILE-L-DRGRGIPWEGNYSS 245 (552)
T ss_pred EEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEE-E-ECCEEEEecCCHHH
Confidence 999999999976543 2344467999999999999999999974 4 446654 4455553
No 281
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.92 E-value=1.2e-24 Score=208.25 Aligned_cols=145 Identities=19% Similarity=0.223 Sum_probs=106.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC----------C
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD----------G 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~----------~ 54 (224)
-.+++|+.++|+||||||||||+++|+|++.|+ +|.|.+ +.|+..++.. .
T Consensus 500 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~ 578 (710)
T TIGR03796 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW-SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP 578 (710)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCC
Confidence 368999999999999999999999999999988 566654 3332222110 0
Q ss_pred Ccccc-hhhHHh---------------------HcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH----HHHH
Q 027392 55 DIPHS-AIGTAR---------------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----CRSI 108 (224)
Q Consensus 55 ~~~~~-~~~~~~---------------------~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~----~~~~ 108 (224)
....+ .....+ +-.-.||||+||++||||+..+|++|||||||++||.+. .+.+
T Consensus 579 ~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l 658 (710)
T TIGR03796 579 TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNL 658 (710)
T ss_pred CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHH
Confidence 00000 000000 011236999999999999999999999999999999653 3345
Q ss_pred HHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 109 AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 109 ~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
.+.++|+|++||..+... .||+++ .+++|+++..|+.++..
T Consensus 659 ~~~~~T~IiitHrl~~i~-~~D~Ii--vl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 659 RRRGCTCIIVAHRLSTIR-DCDEII--VLERGKVVQRGTHEELW 699 (710)
T ss_pred HhcCCEEEEEecCHHHHH-hCCEEE--EEeCCEEEEecCHHHHH
Confidence 567899999999998665 599997 45668888888877654
No 282
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.92 E-value=3.4e-25 Score=210.09 Aligned_cols=147 Identities=17% Similarity=0.242 Sum_probs=108.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCCCCccc-----
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGDGDIPH----- 58 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~~~~~~----- 58 (224)
+-.|++||.++|+|+||||||||+|.|+|++.|+ .|+|.+-+ |+..++. +.+.+
T Consensus 493 sL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~-~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~ 570 (709)
T COG2274 493 SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ-QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALG 570 (709)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcC
Confidence 3478999999999999999999999999999998 57766532 2221111 11111
Q ss_pred -------chhhHH---------------------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH----HH
Q 027392 59 -------SAIGTA---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----CR 106 (224)
Q Consensus 59 -------~~~~~~---------------------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~----~~ 106 (224)
+....+ +.-.-.|||||||++||||+..+|++|||||||++||.+. .+
T Consensus 571 ~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~ 650 (709)
T COG2274 571 NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQ 650 (709)
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHH
Confidence 111100 1111247999999999999999999999999999999643 33
Q ss_pred HHHH--cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHH
Q 027392 107 SIAE--RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 154 (224)
Q Consensus 107 ~~~~--~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~ 154 (224)
.+.+ .|+|+|+++|..+.. ..||+++ ++++|+++..|+.++....
T Consensus 651 ~L~~~~~~~T~I~IaHRl~ti-~~adrIi--Vl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 651 NLLQILQGRTVIIIAHRLSTI-RSADRII--VLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHHHHhcCCeEEEEEccchHh-hhccEEE--EccCCceeccCCHHHHHHh
Confidence 4443 469999999999844 5899997 6777899999888876643
No 283
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=1.5e-24 Score=177.59 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=88.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC---------cccC---------CCCcccch-----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN---------EIGG---------DGDIPHSA----- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~---------~~~~---------~~~~~~~~----- 60 (224)
-.+++||+++|+||||||||||+++|+|+.+|+ .|.+.+.+..- .+++ ...+.++.
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~ 100 (200)
T PRK13540 22 FHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE-KGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIH 100 (200)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHh
Confidence 368899999999999999999999999999887 57665532210 0100 00000000
Q ss_pred --------hhHHhHcC----------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCEE
Q 027392 61 --------IGTARRMQ----------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVML 115 (224)
Q Consensus 61 --------~~~~~~~~----------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~tv 115 (224)
....+.++ -.|+||+||++||++++.+|++|||||||++||... +.++++++.|+
T Consensus 101 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~ti 180 (200)
T PRK13540 101 FSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180 (200)
T ss_pred cCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEE
Confidence 00111111 236999999999999999999999999999999643 34445568999
Q ss_pred EEEEeCcchHHhhccc
Q 027392 116 IGTAHGEWLENIIKNP 131 (224)
Q Consensus 116 i~~tH~~~~~~~~~d~ 131 (224)
|++||+...... ||.
T Consensus 181 ii~sh~~~~~~~-~d~ 195 (200)
T PRK13540 181 LLTSHQDLPLNK-ADY 195 (200)
T ss_pred EEEeCCchhccc-cch
Confidence 999999876653 443
No 284
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.92 E-value=8.4e-25 Score=182.01 Aligned_cols=128 Identities=19% Similarity=0.182 Sum_probs=90.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCC---------CC
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGD---------GD 55 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~---------~~ 55 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+... ..
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~ 113 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ-GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQ 113 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccC
Confidence 368999999999999999999999999999887 56655432 11111000 00
Q ss_pred -ccc-chh---------hHHhHc--CC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH-------
Q 027392 56 -IPH-SAI---------GTARRM--QV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC------- 105 (224)
Q Consensus 56 -~~~-~~~---------~~~~~~--~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~------- 105 (224)
... ... ...+.+ ++ .|+||+||++||++++.+|++|||||||++||....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 193 (226)
T cd03248 114 SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQAL 193 (226)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 000 000 001111 11 369999999999999999999999999999996543
Q ss_pred HHHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 106 RSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 106 ~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
.++.+ +.|+|++||+.++.. .||+++.
T Consensus 194 ~~~~~-~~tii~~sh~~~~~~-~~d~i~~ 220 (226)
T cd03248 194 YDWPE-RRTVLVIAHRLSTVE-RADQILV 220 (226)
T ss_pred HHHcC-CCEEEEEECCHHHHH-hCCEEEE
Confidence 33333 689999999998886 4999864
No 285
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.2e-24 Score=182.20 Aligned_cols=145 Identities=13% Similarity=0.122 Sum_probs=101.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCC--c---cCCCeEEEE---------------------cCCCcccCC----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLS--D---EFQKRVVIV---------------------DTSNEIGGD---- 53 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~--~---~~~~~i~~~---------------------~~~~~~~~~---- 53 (224)
-.+++|++++|+||||||||||+++|+|+.. | + .|.|.+. .+...+...
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~-~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ 102 (250)
T PRK14266 24 LDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH-EGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFD 102 (250)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCC-ccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHHH
Confidence 3688999999999999999999999999864 2 3 4555432 221111100
Q ss_pred ----C-C---c-ccchh-----hHHhHc--------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-
Q 027392 54 ----G-D---I-PHSAI-----GTARRM--------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 104 (224)
Q Consensus 54 ----~-~---~-~~~~~-----~~~~~~--------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~- 104 (224)
. . . ..... ...+.+ .-.|+||+||++||++++.+|++|+||||+++||...
T Consensus 103 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~ 182 (250)
T PRK14266 103 NVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPIST 182 (250)
T ss_pred HHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHH
Confidence 0 0 0 00000 001111 2247999999999999999999999999999999653
Q ss_pred ------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 105 ------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 105 ------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.+++ ++.|||++||+..+...+|++++ ++.+|+++..++++...
T Consensus 183 ~~l~~~l~~~~-~~~tiii~sh~~~~~~~~~~~i~--~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 183 TKIEDLIHKLK-EDYTIVIVTHNMQQATRVSKYTS--FFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHHh-cCCeEEEEECCHHHHHhhcCEEE--EEECCeEEEeCCHHHHH
Confidence 33333 47899999999999999999986 44557788888877654
No 286
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.92 E-value=2e-24 Score=206.07 Aligned_cols=145 Identities=18% Similarity=0.198 Sum_probs=105.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-------------------cCCCcccCC--------C-C
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-------------------DTSNEIGGD--------G-D 55 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-------------------~~~~~~~~~--------~-~ 55 (224)
-.+++||.++|+|+||||||||+|.|+|++.|+ +|.|.+. .|+..++.. + .
T Consensus 474 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~ 552 (686)
T TIGR03797 474 LQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE-SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP 552 (686)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC
Confidence 468999999999999999999999999999998 5766543 222222110 0 0
Q ss_pred ccc-chhhHHhHc---------------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH----HHHH
Q 027392 56 IPH-SAIGTARRM---------------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC----RSIA 109 (224)
Q Consensus 56 ~~~-~~~~~~~~~---------------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~----~~~~ 109 (224)
... ......+.. .-.||||+||++||||+..+|++|||||||++||.+.- +.+.
T Consensus 553 ~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~ 632 (686)
T TIGR03797 553 LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLE 632 (686)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 000 000001100 12379999999999999999999999999999996542 3344
Q ss_pred HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 110 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 110 ~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.++|+|++||..+... .||+++ .+++|+++..|+.++..
T Consensus 633 ~~~~T~IiItHr~~~i~-~~D~Ii--vl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 633 RLKVTRIVIAHRLSTIR-NADRIY--VLDAGRVVQQGTYDELM 672 (686)
T ss_pred HhCCeEEEEecChHHHH-cCCEEE--EEECCEEEEECCHHHHH
Confidence 55789999999998665 599997 45668889988877654
No 287
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.7e-24 Score=204.88 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=102.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeE--------EEEcCCC--cccCCCCc--------ccc----hh
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV--------VIVDTSN--EIGGDGDI--------PHS----AI 61 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i--------~~~~~~~--~~~~~~~~--------~~~----~~ 61 (224)
-.|.+|++++|+||||||||||+|+|+|+++|+ .|.| .|++|.. .+...... +.. ..
T Consensus 333 l~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 411 (638)
T PRK10636 333 LNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV-SGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLR 411 (638)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHH
Confidence 378999999999999999999999999999887 4544 3444432 11100000 000 00
Q ss_pred hHHhHc-----------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHH----HHHcCCEEEEEEeCcchHH
Q 027392 62 GTARRM-----------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEWLEN 126 (224)
Q Consensus 62 ~~~~~~-----------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~----~~~~g~tvi~~tH~~~~~~ 126 (224)
.....+ ...|+||+||++||++++.+|++|||||||++||...... +.+.+.|||++||++.++.
T Consensus 412 ~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~ 491 (638)
T PRK10636 412 DYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLR 491 (638)
T ss_pred HHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence 011222 2347999999999999999999999999999999765432 3344569999999999999
Q ss_pred hhccceeeeccCCeeEE-EcCCHHH
Q 027392 127 IIKNPILSDLIGGVDTV-TLGDEEA 150 (224)
Q Consensus 127 ~~~d~v~~~l~~~~~~v-~~~~~~~ 150 (224)
.+||+++. + .+|+++ ..|+.+.
T Consensus 492 ~~~d~i~~-l-~~G~i~~~~g~~~~ 514 (638)
T PRK10636 492 STTDDLYL-V-HDGKVEPFDGDLED 514 (638)
T ss_pred HhCCEEEE-E-ECCEEEEcCCCHHH
Confidence 99999974 4 456665 4566554
No 288
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.92 E-value=3.1e-24 Score=200.20 Aligned_cols=144 Identities=18% Similarity=0.259 Sum_probs=102.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeE--------EEEcCCCc-ccCCCC-------------ccc-c
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV--------VIVDTSNE-IGGDGD-------------IPH-S 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i--------~~~~~~~~-~~~~~~-------------~~~-~ 59 (224)
+-.|++|++++|+||||||||||+++|+|+++|+ .|.| .|+.+... +..... ... .
T Consensus 342 sl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 420 (552)
T TIGR03719 342 SFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD-SGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKRE 420 (552)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcch
Confidence 3478999999999999999999999999999887 4544 44444321 111000 000 0
Q ss_pred --hhhHHhHcC-----------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHH----HHHcCCEEEEEEeCc
Q 027392 60 --AIGTARRMQ-----------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGE 122 (224)
Q Consensus 60 --~~~~~~~~~-----------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~----~~~~g~tvi~~tH~~ 122 (224)
.......++ -.|+||+||++||++++.+|++|||||||++||...... +.+.+.|||++||++
T Consensus 421 ~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~ 500 (552)
T TIGR03719 421 VPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDR 500 (552)
T ss_pred HHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 001112222 237999999999999999999999999999999765432 333345899999999
Q ss_pred chHHhhccceeeeccCCeeEEEc-CCH
Q 027392 123 WLENIIKNPILSDLIGGVDTVTL-GDE 148 (224)
Q Consensus 123 ~~~~~~~d~v~~~l~~~~~~v~~-~~~ 148 (224)
+++..+||+++. +.++++++.+ ++.
T Consensus 501 ~~~~~~~d~i~~-l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 501 WFLDRIATHILA-FEGDSHVEWFEGNY 526 (552)
T ss_pred HHHHHhCCEEEE-EECCCeEEEeCCCH
Confidence 999999999975 6555565544 444
No 289
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.92 E-value=3.5e-24 Score=202.79 Aligned_cols=144 Identities=15% Similarity=0.179 Sum_probs=101.8
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc--------CCCcccCCCCccc----------------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD--------TSNEIGGDGDIPH---------------- 58 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~--------~~~~~~~~~~~~~---------------- 58 (224)
+-.|++|++++|+||||||||||||+|+|+++|+ .|.|.+.. +.........+..
T Consensus 23 s~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~-~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 101 (635)
T PRK11147 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD-DGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRY 101 (635)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHH
Confidence 3468999999999999999999999999999887 57765422 1110000000000
Q ss_pred ------------------------------------chhhHHhHcC--------CCCccHHHHHHHHHHHhcCCCEEEEe
Q 027392 59 ------------------------------------SAIGTARRMQ--------VPEPSLQHKVMIEAVENHMPEVIIVD 94 (224)
Q Consensus 59 ------------------------------------~~~~~~~~~~--------~~~~g~~qr~~la~al~~~p~llilD 94 (224)
........++ -.|+||+||++||++|+.+|++||||
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLD 181 (635)
T PRK11147 102 HDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLD 181 (635)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0000011222 24799999999999999999999999
Q ss_pred CCCChHhHHHHH----HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEc-CCHH
Q 027392 95 EIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEE 149 (224)
Q Consensus 95 Ep~~~lD~~~~~----~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~-~~~~ 149 (224)
|||++||..... .+.+.+.|||++||+..+...+|++++. | ++|+++.+ |+..
T Consensus 182 EPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~-L-~~G~i~~~~g~~~ 239 (635)
T PRK11147 182 EPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVD-L-DRGKLVSYPGNYD 239 (635)
T ss_pred CCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEE-E-ECCEEEEecCCHH
Confidence 999999976543 2334467999999999999999999974 5 44666654 4433
No 290
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.92 E-value=1.7e-24 Score=204.87 Aligned_cols=147 Identities=12% Similarity=0.195 Sum_probs=103.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE--------EEcCCCc-ccCCCC-----------c--c---c
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------IVDTSNE-IGGDGD-----------I--P---H 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~--------~~~~~~~-~~~~~~-----------~--~---~ 58 (224)
-.|.+|++++|+||||||||||+|+|+|+++|+ .|.|. |+.+... +..... . . .
T Consensus 340 l~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~ 418 (635)
T PRK11147 340 AQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD-SGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPR 418 (635)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHH
Confidence 478999999999999999999999999999887 45543 4444221 111000 0 0 0
Q ss_pred chhhHHhH-----------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH---H-HHHcCCEEEEEEeCcc
Q 027392 59 SAIGTARR-----------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S-IAERGVMLIGTAHGEW 123 (224)
Q Consensus 59 ~~~~~~~~-----------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~---~-~~~~g~tvi~~tH~~~ 123 (224)
........ +.-.|+||+||++||++++.+|++|||||||++||..... + +.+.+.|||++||+.+
T Consensus 419 ~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~ 498 (635)
T PRK11147 419 HVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQ 498 (635)
T ss_pred HHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 00011112 2234799999999999999999999999999999976533 2 2344679999999999
Q ss_pred hHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 124 LENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 124 ~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++..+|++++. +.++|++..+.+...-+
T Consensus 499 ~~~~~~d~i~~-l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 499 FVDNTVTECWI-FEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHhcCEEEE-EeCCCeEEEccCCHHHH
Confidence 99999999974 54456666664444333
No 291
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.92 E-value=2.3e-24 Score=176.07 Aligned_cols=126 Identities=18% Similarity=0.208 Sum_probs=87.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC------------------CCcccCCCCcccc------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT------------------SNEIGGDGDIPHS------ 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~------------------~~~~~~~~~~~~~------ 59 (224)
-.+.+|++++|+||||||||||+++|+|+++|+ .|.+.+.+. ...+.......++
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 99 (198)
T TIGR01189 21 FTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD-SGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAA 99 (198)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHH
Confidence 368899999999999999999999999999887 566554221 1111000000000
Q ss_pred --------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCE
Q 027392 60 --------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVM 114 (224)
Q Consensus 60 --------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~t 114 (224)
.....+.+++ .|+||+||++||++++.+|+++||||||++||... +.+++++|.|
T Consensus 100 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 179 (198)
T TIGR01189 100 IHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGI 179 (198)
T ss_pred HcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence 0001122222 36999999999999999999999999999999643 3445566899
Q ss_pred EEEEEeCcchHHhhccce
Q 027392 115 LIGTAHGEWLENIIKNPI 132 (224)
Q Consensus 115 vi~~tH~~~~~~~~~d~v 132 (224)
+|++||+... ..|+++
T Consensus 180 ii~~sH~~~~--~~~~~~ 195 (198)
T TIGR01189 180 VLLTTHQDLG--LVEARE 195 (198)
T ss_pred EEEEEccccc--ccceEE
Confidence 9999999752 345554
No 292
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.7e-24 Score=196.05 Aligned_cols=142 Identities=18% Similarity=0.195 Sum_probs=106.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc--------------------ccCC---------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE--------------------IGGD--------- 53 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~--------------------~~~~--------- 53 (224)
.-.+.+||+.+|+|.||||||||+|+|+|.++|+ .|.|.+.++... +...
T Consensus 28 ~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~-~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifL 106 (500)
T COG1129 28 SLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD-SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFL 106 (500)
T ss_pred eeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC-CceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhc
Confidence 4478999999999999999999999999999998 677766422110 0000
Q ss_pred CCcccch-------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhH-------H
Q 027392 54 GDIPHSA-------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------H 103 (224)
Q Consensus 54 ~~~~~~~-------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~-------~ 103 (224)
+..+... .....++++ .+.+|||.++||+|+..++++|||||||+.|+. +
T Consensus 107 gre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~ 186 (500)
T COG1129 107 GREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD 186 (500)
T ss_pred ccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 0111100 001122332 357899999999999999999999999999984 3
Q ss_pred HHHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCC
Q 027392 104 ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 147 (224)
Q Consensus 104 ~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~ 147 (224)
.+++++++|.++|++||.++++..+||++. ++.+|+.|...+
T Consensus 187 ~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Drit--VlRDG~~v~~~~ 228 (500)
T COG1129 187 LIRRLKAQGVAIIYISHRLDEVFEIADRIT--VLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHhCCCEEEEEcCcHHHHHHhcCEEE--EEeCCEEeeecc
Confidence 467789999999999999999999999997 556666666433
No 293
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=2.2e-24 Score=175.90 Aligned_cols=122 Identities=15% Similarity=0.151 Sum_probs=86.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC------cccCCC---------Ccccch--------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN------EIGGDG---------DIPHSA-------- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~------~~~~~~---------~~~~~~-------- 60 (224)
-.+++|++++|+|+||||||||+++|+|+++|+ .|.+.+.+..- .+++.. ...++.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~ 99 (195)
T PRK13541 21 ITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS-SGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYN 99 (195)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcc
Confidence 367899999999999999999999999999988 67766533210 011100 000000
Q ss_pred -----hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH-------HHHHHcCCEEEEE
Q 027392 61 -----IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGT 118 (224)
Q Consensus 61 -----~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~-------~~~~~~g~tvi~~ 118 (224)
....+.+++ .|+||+||+++|++++.+|+++||||||++||.... ++..+++.|+|++
T Consensus 100 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~ 179 (195)
T PRK13541 100 SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLS 179 (195)
T ss_pred cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 000122222 369999999999999999999999999999996542 2234568999999
Q ss_pred EeCcchHH
Q 027392 119 AHGEWLEN 126 (224)
Q Consensus 119 tH~~~~~~ 126 (224)
||+..+..
T Consensus 180 sh~~~~i~ 187 (195)
T PRK13541 180 SHLESSIK 187 (195)
T ss_pred eCCccccc
Confidence 99987554
No 294
>PLN03073 ABC transporter F family; Provisional
Probab=99.91 E-value=4.4e-24 Score=203.77 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=101.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE--------EEcCCCcccCC--CC--------ccc----chh
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------IVDTSNEIGGD--GD--------IPH----SAI 61 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~--------~~~~~~~~~~~--~~--------~~~----~~~ 61 (224)
-.|.+|++++|+||||||||||+|+|+|+++|+ .|.|. |+.|....... .. .+. ...
T Consensus 530 l~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~-~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~ 608 (718)
T PLN03073 530 FGIDLDSRIAMVGPNGIGKSTILKLISGELQPS-SGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR 608 (718)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHH
Confidence 468999999999999999999999999999987 46543 44443210000 00 000 000
Q ss_pred hHHhHc-----------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----HHHHcCCEEEEEEeCcchHH
Q 027392 62 GTARRM-----------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLEN 126 (224)
Q Consensus 62 ~~~~~~-----------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~~~~~g~tvi~~tH~~~~~~ 126 (224)
.....+ .-.|+||+||++||++++.+|++|||||||++||..... .+.+.+.|||++||+.+++.
T Consensus 609 ~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~ 688 (718)
T PLN03073 609 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLIS 688 (718)
T ss_pred HHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence 111222 234799999999999999999999999999999976433 33443459999999999999
Q ss_pred hhccceeeeccCCeeEE-EcCCHH
Q 027392 127 IIKNPILSDLIGGVDTV-TLGDEE 149 (224)
Q Consensus 127 ~~~d~v~~~l~~~~~~v-~~~~~~ 149 (224)
.+|++++. + .+|+++ ..++..
T Consensus 689 ~~~drv~~-l-~~G~i~~~~g~~~ 710 (718)
T PLN03073 689 GSVDELWV-V-SEGKVTPFHGTFH 710 (718)
T ss_pred HhCCEEEE-E-ECCEEEEeCCCHH
Confidence 99999974 4 456666 345443
No 295
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.91 E-value=5.4e-24 Score=198.74 Aligned_cols=145 Identities=17% Similarity=0.236 Sum_probs=102.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE--------EEcCCC-cccCCCCcc-------------c-c
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------IVDTSN-EIGGDGDIP-------------H-S 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~--------~~~~~~-~~~~~~~~~-------------~-~ 59 (224)
+-.|++|++++|+||||||||||+++|+|+++|+ .|.|. |+.+.. .+....... . .
T Consensus 344 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~-~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 422 (556)
T PRK11819 344 SFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD-SGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNRE 422 (556)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccH
Confidence 3468999999999999999999999999999887 45544 444432 111100000 0 0
Q ss_pred --hhhHHhHcC-----------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHH----HHHcCCEEEEEEeCc
Q 027392 60 --AIGTARRMQ-----------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGE 122 (224)
Q Consensus 60 --~~~~~~~~~-----------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~----~~~~g~tvi~~tH~~ 122 (224)
.....+.++ -.|+||+||++||++++.+|++|||||||++||...... +.+.+.|||++||+.
T Consensus 423 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~ 502 (556)
T PRK11819 423 IPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDR 502 (556)
T ss_pred HHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCH
Confidence 001112222 237999999999999999999999999999999654332 233345899999999
Q ss_pred chHHhhccceeeeccCCeeEEE-cCCHH
Q 027392 123 WLENIIKNPILSDLIGGVDTVT-LGDEE 149 (224)
Q Consensus 123 ~~~~~~~d~v~~~l~~~~~~v~-~~~~~ 149 (224)
++...+||+++. +.+++++.. .|+..
T Consensus 503 ~~~~~~~d~i~~-l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 503 WFLDRIATHILA-FEGDSQVEWFEGNFQ 529 (556)
T ss_pred HHHHHhCCEEEE-EECCCeEEEecCCHH
Confidence 999999999975 554466554 44444
No 296
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=4.1e-24 Score=168.25 Aligned_cols=130 Identities=20% Similarity=0.234 Sum_probs=94.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC--------------cccCC----CCccc------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN--------------EIGGD----GDIPH------ 58 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~--------------~~~~~----~~~~~------ 58 (224)
.-.|++||.++|+||+|||||||+-.++|+-.|+ +|.|.+.++.- .+++. ..+|.
T Consensus 30 ~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s-sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlEN 108 (228)
T COG4181 30 ELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS-SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALEN 108 (228)
T ss_pred eEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC-CceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhh
Confidence 3468999999999999999999999999999998 67777654421 00000 00000
Q ss_pred -------------c----hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------
Q 027392 59 -------------S----AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------- 104 (224)
Q Consensus 59 -------------~----~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------- 104 (224)
+ .....+++++ .|||++||++||||++..|++||.||||.+||...
T Consensus 109 V~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDL 188 (228)
T COG4181 109 VALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADL 188 (228)
T ss_pred ccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHH
Confidence 0 0111233333 36999999999999999999999999999999542
Q ss_pred HHH-HHHcCCEEEEEEeCcchHHhhccceee
Q 027392 105 CRS-IAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 105 ~~~-~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
+-. -++.|.|+|++|||..++. -|+|.+.
T Consensus 189 lF~lnre~G~TlVlVTHD~~LA~-Rc~R~~r 218 (228)
T COG4181 189 LFALNRERGTTLVLVTHDPQLAA-RCDRQLR 218 (228)
T ss_pred HHHHhhhcCceEEEEeCCHHHHH-hhhheee
Confidence 222 2477999999999998665 6777763
No 297
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.91 E-value=6.6e-24 Score=185.82 Aligned_cols=157 Identities=16% Similarity=0.215 Sum_probs=119.1
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc-------------c---c---CCCCcccch--
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-------------I---G---GDGDIPHSA-- 60 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~-------------~---~---~~~~~~~~~-- 60 (224)
|+-.+++|+.++|+|.+|||||||-++|.+++++. |.|.|.+++-. + + +.+.-|.+.
T Consensus 306 isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~--G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~ 383 (534)
T COG4172 306 ISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ--GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVG 383 (534)
T ss_pred ceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC--ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHH
Confidence 34578999999999999999999999999999875 77777543210 0 0 000001110
Q ss_pred -----------------------hhHHhHcCCC-----------CccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH---
Q 027392 61 -----------------------IGTARRMQVP-----------EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH--- 103 (224)
Q Consensus 61 -----------------------~~~~~~~~~~-----------~~g~~qr~~la~al~~~p~llilDEp~~~lD~~--- 103 (224)
....+.+++. ||||+||++||||++.+|++++||||||.||..
T Consensus 384 qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQa 463 (534)
T COG4172 384 QIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQA 463 (534)
T ss_pred HHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHH
Confidence 0112233332 699999999999999999999999999999943
Q ss_pred ----HHHHHH-HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhh
Q 027392 104 ----ACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILER 162 (224)
Q Consensus 104 ----~~~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~ 162 (224)
.++.+. +.+.+-+++|||+..+..+|++++ ++.+|++|..|+.+.++..+.......
T Consensus 464 Qvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~vi--Vm~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 464 QVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVI--VMRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred HHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEE--EEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 455565 458999999999999999999998 678899999999999998776655543
No 298
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.91 E-value=4.9e-24 Score=200.09 Aligned_cols=144 Identities=17% Similarity=0.167 Sum_probs=102.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC----------C
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD----------G 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~----------~ 54 (224)
-.+++|+.++|+||+|||||||++.|+|++ |+ .|.|.+ ++|+..++.. .
T Consensus 371 l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~-~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~ 448 (588)
T PRK11174 371 FTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY-QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP 448 (588)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC-CcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC
Confidence 468999999999999999999999999999 76 566554 3333222211 0
Q ss_pred Cccc-chhhHH---------hHc------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----HH
Q 027392 55 DIPH-SAIGTA---------RRM------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SI 108 (224)
Q Consensus 55 ~~~~-~~~~~~---------~~~------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~~ 108 (224)
.... +..... ..+ .-.||||+||++||||++.+|++|||||||++||.+.-+ .+
T Consensus 449 ~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l 528 (588)
T PRK11174 449 DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL 528 (588)
T ss_pred CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 0000 000000 011 124799999999999999999999999999999965322 22
Q ss_pred H--HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 109 A--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 109 ~--~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
. .+++|+|++||..+... .||+++ .+++|+++..|+.++..
T Consensus 529 ~~~~~~~TvIiItHrl~~i~-~aD~Ii--vl~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 529 NAASRRQTTLMVTHQLEDLA-QWDQIW--VMQDGQIVQQGDYAELS 571 (588)
T ss_pred HHHhCCCEEEEEecChHHHH-hCCEEE--EEeCCeEeecCCHHHHH
Confidence 2 24789999999997654 699997 44567888888877655
No 299
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.91 E-value=4.5e-24 Score=218.91 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=106.1
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc------------------CCCcccCCCCcccch-----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD------------------TSNEIGGDGDIPHSA----- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~------------------~~~~~~~~~~~~~~~----- 60 (224)
-.+.+||+++|+||||||||||+++|+|+++|+ .|.+.+.+ |...+.....+.+..
T Consensus 951 l~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt-sG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~ 1029 (2272)
T TIGR01257 951 ITFYENQITAFLGHNGAGKTTTLSILTGLLPPT-SGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQ 1029 (2272)
T ss_pred EEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC-ceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHH
Confidence 468999999999999999999999999999988 57665432 111110000000000
Q ss_pred -------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH
Q 027392 61 -------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE 110 (224)
Q Consensus 61 -------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~ 110 (224)
....+.+++ .|+|||||+++|+|++.+|++|||||||++||+.. +++++
T Consensus 1030 lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~- 1108 (2272)
T TIGR01257 1030 LKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR- 1108 (2272)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-
Confidence 001222333 36999999999999999999999999999999653 34443
Q ss_pred cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHH
Q 027392 111 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 151 (224)
Q Consensus 111 ~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~ 151 (224)
+|.|||++||++++++.+||+++ ++.+|+++..|++..+
T Consensus 1109 ~g~TIIltTHdmdea~~laDrI~--iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1109 SGRTIIMSTHHMDEADLLGDRIA--IISQGRLYCSGTPLFL 1147 (2272)
T ss_pred CCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEecCHHHH
Confidence 58999999999999999999997 5566788888777654
No 300
>PRK13409 putative ATPase RIL; Provisional
Probab=99.91 E-value=3.8e-24 Score=200.62 Aligned_cols=128 Identities=18% Similarity=0.166 Sum_probs=94.7
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE-----------EEcCC------------Cccc----CCCCcc
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-----------IVDTS------------NEIG----GDGDIP 57 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~-----------~~~~~------------~~~~----~~~~~~ 57 (224)
.+++|++++|+||||||||||+|+|+|+++|+ .|.+. +.+.. ..+. +....+
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~-~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p 173 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPN-LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIP 173 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC-CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhh
Confidence 68999999999999999999999999999998 57764 21110 0000 000001
Q ss_pred c--------ch---------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH------
Q 027392 58 H--------SA---------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------ 104 (224)
Q Consensus 58 ~--------~~---------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------ 104 (224)
. .. ....+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 174 ~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~ 253 (590)
T PRK13409 174 KVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVAR 253 (590)
T ss_pred hhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 0 00 001122222 37999999999999999999999999999999653
Q ss_pred -HHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 105 -CRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 105 -~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
++++++ |.|||++||++++...+||+++.
T Consensus 254 ~i~~l~~-g~tvIivsHd~~~l~~~~D~v~v 283 (590)
T PRK13409 254 LIRELAE-GKYVLVVEHDLAVLDYLADNVHI 283 (590)
T ss_pred HHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 445556 89999999999999999999964
No 301
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.91 E-value=8.1e-24 Score=198.80 Aligned_cols=145 Identities=15% Similarity=0.169 Sum_probs=104.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-------------------cCCCcccCC---------CC
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-------------------DTSNEIGGD---------GD 55 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-------------------~~~~~~~~~---------~~ 55 (224)
-.+++|+.++|+|+||||||||+++|+|++.|+ +|.|.+. +|+..++.. ..
T Consensus 362 l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~-~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~ 440 (592)
T PRK10790 362 LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT-EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD 440 (592)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCC
Confidence 368999999999999999999999999999997 5666542 232222110 00
Q ss_pred ccc-chhhHHh---------Hc------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----HHH
Q 027392 56 IPH-SAIGTAR---------RM------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIA 109 (224)
Q Consensus 56 ~~~-~~~~~~~---------~~------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~~~ 109 (224)
... ......+ .+ .-.||||+||++||||+..+|++|||||||++||.+.-+ .+.
T Consensus 441 ~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~ 520 (592)
T PRK10790 441 ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA 520 (592)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 000 0000011 11 113699999999999999999999999999999965422 222
Q ss_pred --HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 110 --ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 110 --~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
..++|+|++||+..... .||+++ .+++|+++..|+.+...
T Consensus 521 ~~~~~~tvIivtHr~~~l~-~~D~ii--~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 521 AVREHTTLVVIAHRLSTIV-EADTIL--VLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HHhCCCEEEEEecchHHHH-hCCEEE--EEECCEEEEEcCHHHHH
Confidence 23689999999997554 699997 45668889998887765
No 302
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.91 E-value=9.1e-24 Score=201.80 Aligned_cols=145 Identities=14% Similarity=0.192 Sum_probs=103.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-------------------cCCCcccCC----------C
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-------------------DTSNEIGGD----------G 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-------------------~~~~~~~~~----------~ 54 (224)
-.+++|+.++|+|+||||||||+++|+|++.|+ .|.|.+. .|+..++.. .
T Consensus 486 l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~ 564 (694)
T TIGR03375 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT-EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP 564 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC
Confidence 368999999999999999999999999999998 5666542 222221110 0
Q ss_pred Cccc-chhhHHh---------------------HcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----HH
Q 027392 55 DIPH-SAIGTAR---------------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SI 108 (224)
Q Consensus 55 ~~~~-~~~~~~~---------------------~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~~ 108 (224)
.... ......+ +-...|+||+||++||||+..+|+++||||||++||.+.-+ .+
T Consensus 565 ~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l 644 (694)
T TIGR03375 565 YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRL 644 (694)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 0000 0000000 01124799999999999999999999999999999965432 22
Q ss_pred H--HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 109 A--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 109 ~--~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
. .+++|+|++||+.+.. ..||+++ .+++|+++..|+.++..
T Consensus 645 ~~~~~~~T~iiItHrl~~~-~~~D~ii--vl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 645 KRWLAGKTLVLVTHRTSLL-DLVDRII--VMDNGRIVADGPKDQVL 687 (694)
T ss_pred HHHhCCCEEEEEecCHHHH-HhCCEEE--EEeCCEEEeeCCHHHHH
Confidence 2 2478999999999865 5799997 45668888888877654
No 303
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.91 E-value=9.6e-24 Score=202.12 Aligned_cols=145 Identities=19% Similarity=0.257 Sum_probs=104.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC----------C
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD----------G 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~----------~ 54 (224)
-.+++||.++|+||||||||||++.|+|+++|+ +|.|.+ +.|++.++.. .
T Consensus 502 l~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~ 580 (711)
T TIGR00958 502 FTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT-GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT 580 (711)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC
Confidence 468999999999999999999999999999998 576654 3332222110 0
Q ss_pred Cccc-chhhHH---------hHc------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHHH----
Q 027392 55 DIPH-SAIGTA---------RRM------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI---- 108 (224)
Q Consensus 55 ~~~~-~~~~~~---------~~~------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~~---- 108 (224)
...+ +..... +++ ...||||+||++||||+..+|++|||||||++||.+.-+.+
T Consensus 581 ~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~ 660 (711)
T TIGR00958 581 DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESR 660 (711)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhh
Confidence 0010 110000 111 12379999999999999999999999999999997543322
Q ss_pred HHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 109 AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 109 ~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
...++|+|++||+.+... .||+++. +++|+++..|+.++..
T Consensus 661 ~~~~~TvIiItHrl~~i~-~aD~Iiv--L~~G~ive~Gt~~eL~ 701 (711)
T TIGR00958 661 SRASRTVLLIAHRLSTVE-RADQILV--LKKGSVVEMGTHKQLM 701 (711)
T ss_pred ccCCCeEEEEeccHHHHH-hCCEEEE--EECCEEEEeeCHHHHH
Confidence 234789999999998664 6999974 4567888888877655
No 304
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.91 E-value=7.7e-24 Score=197.22 Aligned_cols=144 Identities=17% Similarity=0.262 Sum_probs=101.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC----------C
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD----------G 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~----------~ 54 (224)
-.+++|+.++|+||||||||||+++|+|+++|+ .|.+.+ ++|+..+... .
T Consensus 339 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~ 417 (544)
T TIGR01842 339 FRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT-SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE 417 (544)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCC
Confidence 368999999999999999999999999999987 566544 2222221110 0
Q ss_pred Cccc-chhh---------HHhHc------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 55 DIPH-SAIG---------TARRM------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 55 ~~~~-~~~~---------~~~~~------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
.... +... ..+.+ ...|+||+||++||||+..+|++|||||||++||.+. +
T Consensus 418 ~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l 497 (544)
T TIGR01842 418 NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAI 497 (544)
T ss_pred CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHH
Confidence 0000 0000 00111 1237999999999999999999999999999999653 2
Q ss_pred HHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHH
Q 027392 106 RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 151 (224)
Q Consensus 106 ~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~ 151 (224)
.++...++|+|++||+.+.. ..||+++. + ++|+++..|+.+..
T Consensus 498 ~~~~~~~~tvi~ith~~~~~-~~~d~i~~-l-~~G~i~~~g~~~~l 540 (544)
T TIGR01842 498 KALKARGITVVVITHRPSLL-GCVDKILV-L-QDGRIARFGERDEV 540 (544)
T ss_pred HHHhhCCCEEEEEeCCHHHH-HhCCEEEE-E-ECCEEEeeCCHHHH
Confidence 23333578999999999865 47999874 4 55778888776554
No 305
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.91 E-value=2.9e-24 Score=201.34 Aligned_cols=146 Identities=16% Similarity=0.229 Sum_probs=103.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-------------------cCCCcccCC--------CC-
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-------------------DTSNEIGGD--------GD- 55 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-------------------~~~~~~~~~--------~~- 55 (224)
-.+++|+.++|+|+||||||||+++|+|+++|+ .|.|.+. +|+..++.. +.
T Consensus 364 l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~ 442 (582)
T PRK11176 364 FKIPAGKTVALVGRSGSGKSTIANLLTRFYDID-EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYART 442 (582)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC-CceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCC
Confidence 368999999999999999999999999999997 5766543 222111110 00
Q ss_pred --ccc-chhhHH---------hHc------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----H
Q 027392 56 --IPH-SAIGTA---------RRM------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----S 107 (224)
Q Consensus 56 --~~~-~~~~~~---------~~~------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~ 107 (224)
... ...... +.+ .-.||||+||++|||++..+|++|||||||++||.+... .
T Consensus 443 ~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~ 522 (582)
T PRK11176 443 EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA 522 (582)
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHH
Confidence 000 000000 111 113799999999999999999999999999999965422 2
Q ss_pred HH--HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 108 IA--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 108 ~~--~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+. .+++|+|++||+.+.. ..||+++ .+++|+++..|+.+....
T Consensus 523 l~~~~~~~tvI~VtHr~~~~-~~~D~Ii--~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 523 LDELQKNRTSLVIAHRLSTI-EKADEIL--VVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHhCCCEEEEEecchHHH-HhCCEEE--EEECCEEEEeCCHHHHHh
Confidence 22 2468999999999755 4699997 445678888888776653
No 306
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.91 E-value=1.2e-23 Score=197.43 Aligned_cols=145 Identities=18% Similarity=0.204 Sum_probs=102.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC----------C
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD----------G 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~----------~ 54 (224)
-.+++|+.++|+|+||||||||+++|+|+++|+ .|.|.+ +.|++.+... .
T Consensus 356 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~ 434 (588)
T PRK13657 356 FEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ-SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP 434 (588)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC
Confidence 368999999999999999999999999999987 565544 3333222110 0
Q ss_pred Cccc-chhhH---------HhHc------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----HH
Q 027392 55 DIPH-SAIGT---------ARRM------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SI 108 (224)
Q Consensus 55 ~~~~-~~~~~---------~~~~------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~~ 108 (224)
.... ..... ...+ ...||||+||++|||+++.+|+++||||||++||.+... .+
T Consensus 435 ~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l 514 (588)
T PRK13657 435 DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL 514 (588)
T ss_pred CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 0000 00000 0000 124799999999999999999999999999999965432 22
Q ss_pred H--HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 109 A--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 109 ~--~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
. .+++|+|++||+.+.. ..||+++. +++|+++..|+.+...
T Consensus 515 ~~~~~~~tvIiitHr~~~~-~~~D~ii~--l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 515 DELMKGRTTFIIAHRLSTV-RNADRILV--FDNGRVVESGSFDELV 557 (588)
T ss_pred HHHhcCCEEEEEEecHHHH-HhCCEEEE--EECCEEEEeCCHHHHH
Confidence 2 2468999999999865 57999974 4557788888776654
No 307
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.91 E-value=5e-24 Score=190.42 Aligned_cols=140 Identities=17% Similarity=0.179 Sum_probs=104.1
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCccc--------------------CCCCcccch-
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG--------------------GDGDIPHSA- 60 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~~- 60 (224)
|.-.|++||+.+|+|.||||||||+++|.|++.|+ .|.|.+.++.-.+. ....+.++.
T Consensus 23 V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~-~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENii 101 (501)
T COG3845 23 VSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD-SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENII 101 (501)
T ss_pred eeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC-cceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhh
Confidence 34579999999999999999999999999999999 67776643211110 000000010
Q ss_pred --------------------hhHHhHcCCC----------CccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------
Q 027392 61 --------------------IGTARRMQVP----------EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH------- 103 (224)
Q Consensus 61 --------------------~~~~~~~~~~----------~~g~~qr~~la~al~~~p~llilDEp~~~lD~~------- 103 (224)
....+++++. +-|+|||+.|-++|..+|++|||||||+-|-+.
T Consensus 102 Lg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~ 181 (501)
T COG3845 102 LGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE 181 (501)
T ss_pred hcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 0012334432 579999999999999999999999999988754
Q ss_pred HHHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEE
Q 027392 104 ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 144 (224)
Q Consensus 104 ~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~ 144 (224)
.++.++++|+|||++||.++++..+||++- ++.+|+++-
T Consensus 182 ~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvT--VLR~Gkvvg 220 (501)
T COG3845 182 ILRRLAAEGKTIIFITHKLKEVMAIADRVT--VLRRGKVVG 220 (501)
T ss_pred HHHHHHHCCCEEEEEeccHHHHHHhhCeeE--EEeCCeEEe
Confidence 355678999999999999999999999996 445565444
No 308
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.90 E-value=2e-23 Score=195.95 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=102.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC----------C
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD----------G 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~----------~ 54 (224)
-.+++|+.++|+||||||||||+++|+|+++|+ .|.|.+ +.|+..+... .
T Consensus 356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~ 434 (585)
T TIGR01192 356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT-VGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE 434 (585)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC-CCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC
Confidence 368999999999999999999999999999987 566654 2222211110 0
Q ss_pred Cccc-chhhH---------H------------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHH----H
Q 027392 55 DIPH-SAIGT---------A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----I 108 (224)
Q Consensus 55 ~~~~-~~~~~---------~------------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~----~ 108 (224)
.... +.... . +.....|+||+||++|||+++.+|++|||||||++||.+..+. +
T Consensus 435 ~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l 514 (585)
T TIGR01192 435 GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI 514 (585)
T ss_pred CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 0000 00000 0 0011237999999999999999999999999999999654322 2
Q ss_pred H--HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 109 A--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 109 ~--~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
. ..+.|+|++||+.+... .||+++ .+++|+++..|+.+...
T Consensus 515 ~~~~~~~tvI~isH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 515 DALRKNRTTFIIAHRLSTVR-NADLVL--FLDQGRLIEKGSFQELI 557 (585)
T ss_pred HHHhCCCEEEEEEcChHHHH-cCCEEE--EEECCEEEEECCHHHHH
Confidence 2 24789999999998774 599997 44557788888776554
No 309
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.90 E-value=2.1e-23 Score=194.95 Aligned_cols=144 Identities=17% Similarity=0.251 Sum_probs=103.4
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC--------C---
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD--------G--- 54 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~--------~--- 54 (224)
.+++|+.++|+|+||||||||+++|+|++.|+ .|.|.+ ++|++.++.. .
T Consensus 354 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 432 (571)
T TIGR02203 354 VIEPGETVALVGRSGSGKSTLVNLIPRFYEPD-SGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE 432 (571)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCC
Confidence 68899999999999999999999999999987 566654 3333222211 0
Q ss_pred Ccccc-hhhH---------HhHc------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHH----H
Q 027392 55 DIPHS-AIGT---------ARRM------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----I 108 (224)
Q Consensus 55 ~~~~~-~~~~---------~~~~------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~----~ 108 (224)
..... .... ..++ ...||||+||++|||+++.+|++++|||||++||....+. +
T Consensus 433 ~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L 512 (571)
T TIGR02203 433 QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL 512 (571)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 01110 0000 0111 1247999999999999999999999999999999654322 2
Q ss_pred H--HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 109 A--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 109 ~--~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
. ..++|+|++||+.+.. ..||+++. + ++|+++..++.+...
T Consensus 513 ~~~~~~~tiIiitH~~~~~-~~~D~ii~-l-~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 513 ERLMQGRTTLVIAHRLSTI-EKADRIVV-M-DDGRIVERGTHNELL 555 (571)
T ss_pred HHHhCCCEEEEEehhhHHH-HhCCEEEE-E-eCCEEEeeCCHHHHH
Confidence 2 2468999999999754 57999974 4 557788888877765
No 310
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.90 E-value=8.3e-24 Score=174.92 Aligned_cols=140 Identities=20% Similarity=0.143 Sum_probs=95.9
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-----------cccCC------------------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-----------EIGGD------------------ 53 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-----------~~~~~------------------ 53 (224)
+=.|++||..+|+|||||||||||++++|..+|. .+.+.++.... .+++.
T Consensus 51 sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps-sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvV 129 (257)
T COG1119 51 SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS-SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVV 129 (257)
T ss_pred ceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC-CCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceee
Confidence 3378999999999999999999999999999987 56555543210 11110
Q ss_pred --------CCcc----cch----hhHH----------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH--
Q 027392 54 --------GDIP----HSA----IGTA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-- 105 (224)
Q Consensus 54 --------~~~~----~~~----~~~~----------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~-- 105 (224)
+.+. .+. .... +.+.-.|-||+||+.||||++.+|++||||||++|||....
T Consensus 130 lSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ 209 (257)
T COG1119 130 LSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQ 209 (257)
T ss_pred eecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHH
Confidence 0000 000 0011 12233468999999999999999999999999999995433
Q ss_pred -----HHHHHc--CCEEEEEEeCcchHHhhccceeeeccCCeeEEEc
Q 027392 106 -----RSIAER--GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 145 (224)
Q Consensus 106 -----~~~~~~--g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~ 145 (224)
.++... +.++|++||..+++-...++++ +...++++..
T Consensus 210 ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l--ll~~g~v~~~ 254 (257)
T COG1119 210 LLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL--LLKEGEVVAQ 254 (257)
T ss_pred HHHHHHHHhcCCCCceEEEEEcchhhcccccceEE--EeeCCceeec
Confidence 334433 6789999999877766666665 4444555443
No 311
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.7e-23 Score=190.58 Aligned_cols=144 Identities=15% Similarity=0.175 Sum_probs=104.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC-------------------CCcccCCCCcccch----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-------------------SNEIGGDGDIPHSA---- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~-------------------~~~~~~~~~~~~~~---- 60 (224)
-.+++|+.++|+|+||||||||++.|+|+++|+ .|.+.+.+. ++.+.. +.+.++.
T Consensus 342 ~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~-~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~ 419 (559)
T COG4988 342 LTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT-QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR 419 (559)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC-CceEEECCccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC
Confidence 378999999999999999999999999999987 677665433 222211 0111110
Q ss_pred --------hhHH------hHc----C----------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H
Q 027392 61 --------IGTA------RRM----Q----------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 105 (224)
Q Consensus 61 --------~~~~------~~~----~----------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~ 105 (224)
.... +-+ + -.|+||+||+++|||+..+++++++||||++||.+. +
T Consensus 420 ~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l 499 (559)
T COG4988 420 PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQAL 499 (559)
T ss_pred CcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHH
Confidence 0001 111 1 136899999999999999999999999999999653 2
Q ss_pred HHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 106 RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 106 ~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
.++. +++|+|++||++..+ .-+|+++ .+++|+++..|+.+....
T Consensus 500 ~~l~-~~ktvl~itHrl~~~-~~~D~I~--vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 500 QELA-KQKTVLVITHRLEDA-ADADRIV--VLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HHHH-hCCeEEEEEcChHHH-hcCCEEE--EecCCceeccCCHHHHhh
Confidence 3333 459999999998744 5788887 566688999988887653
No 312
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.90 E-value=3.1e-23 Score=194.33 Aligned_cols=144 Identities=15% Similarity=0.188 Sum_probs=103.1
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-------------------cCCCcccCCCCccc------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-------------------DTSNEIGGDGDIPH------ 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-------------------~~~~~~~~~~~~~~------ 58 (224)
-.+++|+.++|+||||||||||+++|+|++.|+ .|.|.+. .|+..++. ..+.+
T Consensus 361 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~ 438 (574)
T PRK11160 361 LQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ-QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA 438 (574)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC
Confidence 368999999999999999999999999999988 5766542 22221111 00000
Q ss_pred ------chhhHHh--------------------HcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----HH
Q 027392 59 ------SAIGTAR--------------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SI 108 (224)
Q Consensus 59 ------~~~~~~~--------------------~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~~ 108 (224)
+.....+ +-...|+||+||++|||+++.+|++|||||||++||.+.-+ .+
T Consensus 439 ~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l 518 (574)
T PRK11160 439 PNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL 518 (574)
T ss_pred CccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0000011 11124789999999999999999999999999999965422 22
Q ss_pred H--HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 109 A--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 109 ~--~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
. .+++|+|++||..+... .||+++ .+++|+++..|+.++..
T Consensus 519 ~~~~~~~tviiitHr~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~ 561 (574)
T PRK11160 519 AEHAQNKTVLMITHRLTGLE-QFDRIC--VMDNGQIIEQGTHQELL 561 (574)
T ss_pred HHHcCCCEEEEEecChhHHH-hCCEEE--EEeCCeEEEeCCHHHHH
Confidence 2 24789999999998665 599997 44567888888776654
No 313
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.90 E-value=1.9e-23 Score=200.02 Aligned_cols=145 Identities=12% Similarity=0.178 Sum_probs=103.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC--------C--
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD--------G-- 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~--------~-- 54 (224)
-.+++|+.++|+||||||||||++.|+|++.|+ .|.|.+ +.|+..++.. +
T Consensus 495 l~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~ 573 (708)
T TIGR01193 495 LTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR-SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK 573 (708)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCCCC-CcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCC
Confidence 468999999999999999999999999999998 566654 3333222110 0
Q ss_pred -Cccc-chhhHHhH---------------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH----HH
Q 027392 55 -DIPH-SAIGTARR---------------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC----RS 107 (224)
Q Consensus 55 -~~~~-~~~~~~~~---------------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~----~~ 107 (224)
.... ......+. -.-.|+||+||++||||+..+|++|||||||++||.+.- +.
T Consensus 574 ~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~ 653 (708)
T TIGR01193 574 ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNN 653 (708)
T ss_pred CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHH
Confidence 0110 00000110 011369999999999999999999999999999996532 22
Q ss_pred HHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 108 IAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 108 ~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.+ +++|+|++||+.+.. ..||+++ .+++|+++..|+.++..
T Consensus 654 L~~~~~~T~IiitHr~~~~-~~~D~i~--~l~~G~i~~~G~~~~L~ 696 (708)
T TIGR01193 654 LLNLQDKTIIFVAHRLSVA-KQSDKII--VLDHGKIIEQGSHDELL 696 (708)
T ss_pred HHHhcCCEEEEEecchHHH-HcCCEEE--EEECCEEEEECCHHHHH
Confidence 222 478999999999865 5799997 44667888888877654
No 314
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=2.8e-23 Score=165.32 Aligned_cols=159 Identities=19% Similarity=0.253 Sum_probs=121.0
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCC-------------C---Ccccc------
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD-------------G---DIPHS------ 59 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~-------------~---~~~~~------ 59 (224)
|+-.+++|+.++++|.||||||||.|+|+|.++|+ +|++.+.+..-..+.. . .-|..
T Consensus 32 vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT-sG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiL 110 (267)
T COG4167 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT-SGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQIL 110 (267)
T ss_pred eEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC-CceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHh
Confidence 35578899999999999999999999999999998 6888775432211100 0 00000
Q ss_pred ------------------hhhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH------
Q 027392 60 ------------------AIGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------ 104 (224)
Q Consensus 60 ------------------~~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------ 104 (224)
.+...+.+++ .+.||+||+++||||+.+|+++|.||...+||...
T Consensus 111 d~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~N 190 (267)
T COG4167 111 DFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLIN 190 (267)
T ss_pred cchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHH
Confidence 0111233333 24799999999999999999999999999999542
Q ss_pred -HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhc
Q 027392 105 -CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 163 (224)
Q Consensus 105 -~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (224)
..++.+ .|...|+++...-....++|.++ +++.|++|..|.+...+..+...+..|.
T Consensus 191 L~LeLQek~GiSyiYV~QhlG~iKHi~D~vi--VM~EG~vvE~G~t~~v~a~P~~~~TkRl 249 (267)
T COG4167 191 LMLELQEKQGISYIYVTQHIGMIKHISDQVL--VMHEGEVVERGSTADVLASPLHELTKRL 249 (267)
T ss_pred HHHHHHHHhCceEEEEechhhHhhhhcccEE--EEecCceeecCChhhhhcCCccHHHHHH
Confidence 334554 49999999999999999999998 7788999999999999888877666653
No 315
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.90 E-value=7.3e-24 Score=195.04 Aligned_cols=140 Identities=16% Similarity=0.141 Sum_probs=95.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc--------------------CCCcccCC----------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD--------------------TSNEIGGD---------- 53 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~--------------------~~~~~~~~---------- 53 (224)
-.+++|++++|+||||||||||+|+|+|+.++...|.|.+.+ +.......
T Consensus 281 l~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~ 360 (490)
T PRK10938 281 WQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVIL 360 (490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHH
Confidence 368899999999999999999999999987641145554432 11000000
Q ss_pred -CCc---------cc----chhhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH----
Q 027392 54 -GDI---------PH----SAIGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---- 104 (224)
Q Consensus 54 -~~~---------~~----~~~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~---- 104 (224)
... .. ......+.+++ .|+||+||++||++++.+|++|||||||++||...
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 440 (490)
T PRK10938 361 SGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLV 440 (490)
T ss_pred hccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 000 00 00001112222 36999999999999999999999999999999653
Q ss_pred ---HHHHHHcC-CEEEEEEeCcchHHh-hccceeeeccCCeeEEEc
Q 027392 105 ---CRSIAERG-VMLIGTAHGEWLENI-IKNPILSDLIGGVDTVTL 145 (224)
Q Consensus 105 ---~~~~~~~g-~tvi~~tH~~~~~~~-~~d~v~~~l~~~~~~v~~ 145 (224)
+.++++++ .|||++||+.+++.. +|++++ ++++|+++..
T Consensus 441 ~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~--~l~~G~i~~~ 484 (490)
T PRK10938 441 RRFVDVLISEGETQLLFVSHHAEDAPACITHRLE--FVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHhcCCcEEEEEecchhhhhhhhheeEE--EecCCceEEe
Confidence 34455555 479999999998876 588886 4555665554
No 316
>PLN03073 ABC transporter F family; Provisional
Probab=99.90 E-value=4.7e-23 Score=196.77 Aligned_cols=139 Identities=22% Similarity=0.272 Sum_probs=100.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcC---CccCCCeEEEEcCCCcccCCCC------------------------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVL---SDEFQKRVVIVDTSNEIGGDGD------------------------ 55 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l---~~~~~~~i~~~~~~~~~~~~~~------------------------ 55 (224)
+-.|.+|++++|+||||||||||||+|+|.. .|+ .+.|.+++|... +....
T Consensus 197 sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~-~g~I~~~~Q~~~-g~~~t~~~~v~~~~~~~~~~~~~~~~~~~ 274 (718)
T PLN03073 197 SVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPK-NCQILHVEQEVV-GDDTTALQCVLNTDIERTQLLEEEAQLVA 274 (718)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCC-CCEEEEEeccCC-CCCCCHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999864 344 588887765310 00000
Q ss_pred ---------------------cccch------------------------hhHHhH-----------cCCCCccHHHHHH
Q 027392 56 ---------------------IPHSA------------------------IGTARR-----------MQVPEPSLQHKVM 79 (224)
Q Consensus 56 ---------------------~~~~~------------------------~~~~~~-----------~~~~~~g~~qr~~ 79 (224)
.+... ...... ..-.|+||+||++
T Consensus 275 q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~ 354 (718)
T PLN03073 275 QQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIA 354 (718)
T ss_pred HHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHH
Confidence 00000 000011 1224799999999
Q ss_pred HHHHHhcCCCEEEEeCCCChHhHHHHHH----HHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEc
Q 027392 80 IEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 145 (224)
Q Consensus 80 la~al~~~p~llilDEp~~~lD~~~~~~----~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~ 145 (224)
||++|+.+|++|||||||++||...... +.+.+.|+|++||+..+...+|++++. + ++++++.+
T Consensus 355 LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~-l-~~g~i~~~ 422 (718)
T PLN03073 355 LARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILH-L-HGQKLVTY 422 (718)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE-E-ECCEEEEe
Confidence 9999999999999999999999765433 345588999999999999999999974 4 44666543
No 317
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.90 E-value=3.2e-23 Score=194.05 Aligned_cols=145 Identities=18% Similarity=0.201 Sum_probs=102.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-------------------cCCCcccCC----------C
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-------------------DTSNEIGGD----------G 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-------------------~~~~~~~~~----------~ 54 (224)
-.+++|+.++|+||||||||||+++|+|+++|+ .|.+.+. .|...+... .
T Consensus 336 ~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~ 414 (569)
T PRK10789 336 FTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS-EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP 414 (569)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCC
Confidence 368999999999999999999999999999987 5766542 222211110 0
Q ss_pred Cccc-chhhHHh---------Hc------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----HH
Q 027392 55 DIPH-SAIGTAR---------RM------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SI 108 (224)
Q Consensus 55 ~~~~-~~~~~~~---------~~------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~~ 108 (224)
.... ......+ .+ ...|+||+||++|||+++.+|+++||||||++||.+... .+
T Consensus 415 ~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l 494 (569)
T PRK10789 415 DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNL 494 (569)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 0000 0000000 11 124799999999999999999999999999999965422 22
Q ss_pred H--HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 109 A--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 109 ~--~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
. .+++|+|++||+.+... .||+++ .+++|+++..|+.+...
T Consensus 495 ~~~~~~~tii~itH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 495 RQWGEGRTVIISAHRLSALT-EASEIL--VMQHGHIAQRGNHDQLA 537 (569)
T ss_pred HHHhCCCEEEEEecchhHHH-cCCEEE--EEeCCEEEEecCHHHHH
Confidence 2 25799999999997654 699987 44567788888876654
No 318
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.90 E-value=1.4e-23 Score=187.88 Aligned_cols=147 Identities=18% Similarity=0.236 Sum_probs=109.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE-------------------EEcCCCcccCCCCcccc----
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IVDTSNEIGGDGDIPHS---- 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~-------------------~~~~~~~~~~~~~~~~~---- 59 (224)
+=.+.+|+.++|+||+|||||||.|.|.|..+|. .|.|. |++|+-+++. +.+.++
T Consensus 356 sF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~-~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaRf 433 (580)
T COG4618 356 SFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT-SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIARF 433 (580)
T ss_pred eeEecCCceEEEECCCCccHHHHHHHHHcccccC-CCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHhc
Confidence 3468999999999999999999999999999987 45544 3333322221 111111
Q ss_pred --------hhhHHhHcC---------------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhH-------H
Q 027392 60 --------AIGTARRMQ---------------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------H 103 (224)
Q Consensus 60 --------~~~~~~~~~---------------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~-------~ 103 (224)
.+..++.-+ -.|+|||||++||||+-.+|.+++||||-++||. +
T Consensus 434 ~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~ 513 (580)
T COG4618 434 GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAA 513 (580)
T ss_pred cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHH
Confidence 111111001 1268999999999999999999999999999993 4
Q ss_pred HHHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHH
Q 027392 104 ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 154 (224)
Q Consensus 104 ~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~ 154 (224)
++..++++|.|+|+++|..+ +...+|+++ ++++|++-.+|+.++....
T Consensus 514 Ai~~~k~rG~~vvviaHRPs-~L~~~Dkil--vl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 514 AILAAKARGGTVVVIAHRPS-ALASVDKIL--VLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHHHHHHcCCEEEEEecCHH-HHhhcceee--eecCChHHhcCCHHHHHHH
Confidence 57788899999999999998 556889997 6677877778888776643
No 319
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=6.2e-23 Score=160.44 Aligned_cols=142 Identities=18% Similarity=0.288 Sum_probs=107.0
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccC--------------------CCCccc-----ch
Q 027392 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------------------DGDIPH-----SA 60 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~--------------------~~~~~~-----~~ 60 (224)
-+.|+.+.|+||+|+|||||+|.+.=+.-|. +|...+-++...+.. ....|+ +.
T Consensus 25 ~~~getlvllgpsgagkssllr~lnlle~p~-sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enl 103 (242)
T COG4161 25 CPEGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENL 103 (242)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHhCCC-CCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHH
Confidence 4789999999999999999999999888777 566555332211110 001111 00
Q ss_pred h-------------------hHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------H
Q 027392 61 I-------------------GTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------A 104 (224)
Q Consensus 61 ~-------------------~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~ 104 (224)
+ ...+++.+ .||||+||++|||||+++|++|++||||+.||++ .
T Consensus 104 ieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~i 183 (242)
T COG4161 104 IEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI 183 (242)
T ss_pred HhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHH
Confidence 0 01122222 2699999999999999999999999999999965 4
Q ss_pred HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHH
Q 027392 105 CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 150 (224)
Q Consensus 105 ~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~ 150 (224)
++++.+.|+|=+++||..+.+...+.+++ ++..|++|..|+...
T Consensus 184 ikel~~tgitqvivthev~va~k~as~vv--yme~g~ive~g~a~~ 227 (242)
T COG4161 184 IKELAETGITQVIVTHEVEVARKTASRVV--YMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHhcCceEEEEEeehhHHHhhhhheE--eeecCeeEeecchhh
Confidence 67888999999999999999999999997 566788999887764
No 320
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.90 E-value=5.8e-23 Score=193.89 Aligned_cols=148 Identities=16% Similarity=0.188 Sum_probs=106.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc--CCCeEEEE----------------cCCCcccCCCCc--------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE--FQKRVVIV----------------DTSNEIGGDGDI-------- 56 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~--~~~~i~~~----------------~~~~~~~~~~~~-------- 56 (224)
+-.+++||+++|+|||||||||||++|+|...+. ..|.|.+. .|...+.....+
T Consensus 45 s~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~ 124 (617)
T TIGR00955 45 SGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQA 124 (617)
T ss_pred EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHH
Confidence 3478999999999999999999999999998763 13445432 222211111000
Q ss_pred ----ccc-----h----hhHHh----------HcC------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH----
Q 027392 57 ----PHS-----A----IGTAR----------RMQ------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH---- 103 (224)
Q Consensus 57 ----~~~-----~----~~~~~----------~~~------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~---- 103 (224)
+.. . ....+ .++ -.|+||+||+.||++++.+|++++|||||++||..
T Consensus 125 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~ 204 (617)
T TIGR00955 125 HLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS 204 (617)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHH
Confidence 100 0 00001 111 24799999999999999999999999999999954
Q ss_pred ---HHHHHHHcCCEEEEEEeCcc-hHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 104 ---ACRSIAERGVMLIGTAHGEW-LENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 104 ---~~~~~~~~g~tvi~~tH~~~-~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
.+++++++|.|+|+++|+.+ ....++|+++ ++.+|+++..|+++...
T Consensus 205 l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~--ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 205 VVQVLKGLAQKGKTIICTIHQPSSELFELFDKII--LMAEGRVAYLGSPDQAV 255 (617)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEE--EeeCCeEEEECCHHHHH
Confidence 34556667899999999985 5678999997 55678899999887654
No 321
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=2.5e-23 Score=163.37 Aligned_cols=132 Identities=17% Similarity=0.281 Sum_probs=97.9
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-------------------cccCC-----CCcc
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-------------------EIGGD-----GDIP 57 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-------------------~~~~~-----~~~~ 57 (224)
++-.+.+||+++|+||+|||||||+|+++.+++|+ .|.+.+-+++- .++.. ..+|
T Consensus 22 isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~-~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP 100 (223)
T COG4619 22 ISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT-SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFP 100 (223)
T ss_pred eeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC-CceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccc
Confidence 45689999999999999999999999999999998 57776643321 11100 0011
Q ss_pred cch----------hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------H-HHH
Q 027392 58 HSA----------IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C-RSI 108 (224)
Q Consensus 58 ~~~----------~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~-~~~ 108 (224)
.+. .....++.+ .|||++||++|+|-|...|++|+|||||+.||... + +.+
T Consensus 101 ~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v 180 (223)
T COG4619 101 WQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYV 180 (223)
T ss_pred hHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHh
Confidence 110 011222322 36999999999999999999999999999999532 2 233
Q ss_pred HHcCCEEEEEEeCcchHHhhccceee
Q 027392 109 AERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 109 ~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
+++..+++.+||+.+.+-+.+++++.
T Consensus 181 ~~q~vAv~WiTHd~dqa~rha~k~it 206 (223)
T COG4619 181 REQNVAVLWITHDKDQAIRHADKVIT 206 (223)
T ss_pred hhhceEEEEEecChHHHhhhhheEEE
Confidence 57889999999999988889999865
No 322
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.89 E-value=6.8e-23 Score=191.79 Aligned_cols=144 Identities=15% Similarity=0.224 Sum_probs=101.5
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC----------CC
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD----------GD 55 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~----------~~ 55 (224)
.+++||.++|+|+||||||||+++|+|+++|. .|.+.+ ++|++.++.. ..
T Consensus 362 ~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~-~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~ 440 (576)
T TIGR02204 362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ-SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPD 440 (576)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCC
Confidence 68999999999999999999999999999987 566544 2222221110 00
Q ss_pred ccc-chhhH---------HhHc------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----HHH
Q 027392 56 IPH-SAIGT---------ARRM------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIA 109 (224)
Q Consensus 56 ~~~-~~~~~---------~~~~------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~~~ 109 (224)
... ..... .+.+ ...|+||+||+++|||+..+|++||+||||++||....+ .+.
T Consensus 441 ~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~ 520 (576)
T TIGR02204 441 ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALE 520 (576)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHH
Confidence 000 00000 0111 113689999999999999999999999999999965422 222
Q ss_pred --HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 110 --ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 110 --~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
.+++|+|++||+.+.. ..+|+++. + .+|+++..|+.+...
T Consensus 521 ~~~~~~t~IiitH~~~~~-~~~d~vi~-l-~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 521 TLMKGRTTLIIAHRLATV-LKADRIVV-M-DQGRIVAQGTHAELI 562 (576)
T ss_pred HHhCCCEEEEEecchHHH-HhCCEEEE-E-ECCEEEeeecHHHHH
Confidence 2479999999999765 56999974 4 456788888776554
No 323
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.7e-23 Score=186.40 Aligned_cols=146 Identities=14% Similarity=0.169 Sum_probs=105.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc----------ccCCC--------Ccc--------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE----------IGGDG--------DIP-------- 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~----------~~~~~--------~~~-------- 57 (224)
-.+++||.++|+|++|||||||++.++|.+.|+ +|.+...+..-. +.... ...
T Consensus 359 l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~-~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~ 437 (573)
T COG4987 359 LTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ-QGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP 437 (573)
T ss_pred eeecCCCeEEEECCCCCCHHHHHHHHHhccCCC-CCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC
Confidence 468999999999999999999999999999998 687776432110 00000 000
Q ss_pred ----cchhhHHhHcCC---------------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----HH
Q 027392 58 ----HSAIGTARRMQV---------------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SI 108 (224)
Q Consensus 58 ----~~~~~~~~~~~~---------------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~~ 108 (224)
++.....+++++ .|||++||++|||++.++.+++||||||.|||+..-+ .+
T Consensus 438 ~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll 517 (573)
T COG4987 438 DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALL 517 (573)
T ss_pred CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHH
Confidence 001111111111 2699999999999999999999999999999965322 22
Q ss_pred --HHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 109 --AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 109 --~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+-+++|+|++||.....+ .||+|+ ++.+|++++.|+......
T Consensus 518 ~~~~~~kTll~vTHrL~~le-~~drIi--vl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 518 FEHAEGKTLLMVTHRLRGLE-RMDRII--VLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHhcCCeEEEEecccccHh-hcCEEE--EEECCeeeecCCHHhhhc
Confidence 235899999999987554 789987 566788999988887653
No 324
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.9e-23 Score=162.31 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=107.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc---ccCC------------CCcccc--------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE---IGGD------------GDIPHS-------- 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~---~~~~------------~~~~~~-------- 59 (224)
+--+.|||+.+|+|.+||||||||+||++-+.|+ .|.+.|...+.. +... ..+.++
T Consensus 26 sF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~-~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm 104 (258)
T COG4107 26 SFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD-AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRM 104 (258)
T ss_pred ceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC-CCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCcccccee
Confidence 3357899999999999999999999999999998 688877532211 1000 000000
Q ss_pred ----------------------h----hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhH
Q 027392 60 ----------------------A----IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 102 (224)
Q Consensus 60 ----------------------~----~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~ 102 (224)
+ ....+++.+ .||||+||+.||+-|...|+++++||||.|||.
T Consensus 105 ~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDV 184 (258)
T COG4107 105 QVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 184 (258)
T ss_pred eeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcch
Confidence 0 001122222 269999999999999999999999999999995
Q ss_pred HH-------HHHH-HHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 103 HA-------CRSI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 103 ~~-------~~~~-~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
.. ++.+ .+-+.+++++|||+..+..++++.+ .+..++++..|-.+..+.
T Consensus 185 SVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlm--vmk~g~vve~GLTDrvLD 241 (258)
T COG4107 185 SVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLM--VMKQGQVVESGLTDRVLD 241 (258)
T ss_pred hhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcce--eecCCCEecccccccccc
Confidence 42 2333 3668999999999999999999997 566677787766555443
No 325
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.89 E-value=6.9e-23 Score=194.63 Aligned_cols=129 Identities=17% Similarity=0.211 Sum_probs=94.7
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCe--------EEEEcCCCcccCC--------CC---------ccc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR--------VVIVDTSNEIGGD--------GD---------IPH 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~--------i~~~~~~~~~~~~--------~~---------~~~ 58 (224)
-.+++||+++|+||||||||||+++|+|+++++ +|. +.++.|...+... .. ...
T Consensus 473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~-~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~ 551 (659)
T TIGR00954 473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVY-GGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSD 551 (659)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCH
Confidence 368899999999999999999999999999876 454 4556555432211 00 000
Q ss_pred -chhhHHhHc-------------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----HHHHcCCE
Q 027392 59 -SAIGTARRM-------------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVM 114 (224)
Q Consensus 59 -~~~~~~~~~-------------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~~~~~g~t 114 (224)
......+.+ ...|+||+||++|||+++++|+++||||||++||.+... .+++.+.|
T Consensus 552 ~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~t 631 (659)
T TIGR00954 552 KDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGIT 631 (659)
T ss_pred HHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCE
Confidence 000111111 235799999999999999999999999999999976433 23456899
Q ss_pred EEEEEeCcchHHhhccceee
Q 027392 115 LIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 115 vi~~tH~~~~~~~~~d~v~~ 134 (224)
+|++||+.+.. ..||+++.
T Consensus 632 vI~isH~~~~~-~~~d~il~ 650 (659)
T TIGR00954 632 LFSVSHRKSLW-KYHEYLLY 650 (659)
T ss_pred EEEEeCchHHH-HhCCEEEE
Confidence 99999999865 57999864
No 326
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.89 E-value=2.4e-23 Score=198.97 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=103.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCC----------C
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGD----------G 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~----------~ 54 (224)
-.+++|+.++|+|+||||||||+++|+|++.|+ +|.|.+.+ |+..+... .
T Consensus 478 l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~-~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~ 556 (694)
T TIGR01846 478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ-HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP 556 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC
Confidence 368999999999999999999999999999988 67766532 11111100 0
Q ss_pred Cccc-chhhHH---------hH------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----HH
Q 027392 55 DIPH-SAIGTA---------RR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SI 108 (224)
Q Consensus 55 ~~~~-~~~~~~---------~~------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~~ 108 (224)
.... ...... .+ -.-.|+||+||++||||++.+|++|||||||++||...-. .+
T Consensus 557 ~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l 636 (694)
T TIGR01846 557 GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM 636 (694)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 0000 000000 11 1123699999999999999999999999999999965322 22
Q ss_pred H--HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 109 A--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 109 ~--~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
. ..+.|+|++||+.+... .||+++ .+++|+++..|+.+...
T Consensus 637 ~~~~~~~t~i~itH~~~~~~-~~d~ii--~l~~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 637 REICRGRTVIIIAHRLSTVR-ACDRII--VLEKGQIAESGRHEELL 679 (694)
T ss_pred HHHhCCCEEEEEeCChHHHH-hCCEEE--EEeCCEEEEeCCHHHHH
Confidence 2 24789999999998765 599997 45668888888877654
No 327
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=4.2e-23 Score=167.78 Aligned_cols=144 Identities=16% Similarity=0.198 Sum_probs=108.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc-------------ccC---CCCcc-----cchh
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-------------IGG---DGDIP-----HSAI 61 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~-------------~~~---~~~~~-----~~~~ 61 (224)
+-.|++|+++-++|.||||||||+++|+|.+.|+ +|.|.+...+-. ++. .+..+ ++..
T Consensus 26 sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t-~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~ 104 (263)
T COG1101 26 SLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT-SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLA 104 (263)
T ss_pred ceeecCCceEEEEcCCCccHHHHHHHhhCccccC-CceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHH
Confidence 4578999999999999999999999999999998 688876432100 000 00000 0000
Q ss_pred ------------------------h------------HHhHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH
Q 027392 62 ------------------------G------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC 105 (224)
Q Consensus 62 ------------------------~------------~~~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~ 105 (224)
. ...++++.||||||-+.++.|-.+.|++|+|||-|++||++..
T Consensus 105 la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta 184 (263)
T COG1101 105 LAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTA 184 (263)
T ss_pred HHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchH
Confidence 0 0134456689999999999999999999999999999997542
Q ss_pred -------HHH-HHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHH
Q 027392 106 -------RSI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEE 149 (224)
Q Consensus 106 -------~~~-~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~ 149 (224)
.++ .+.+.|.+++||+++.+-.+.+|.+ +++.|++|+.-...
T Consensus 185 ~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlI--mLh~G~IvlDv~g~ 234 (263)
T COG1101 185 EFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLI--MLHSGKIVLDVTGE 234 (263)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEE--EEeCCeEEEEcccc
Confidence 223 3568899999999999999999997 77888888864433
No 328
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=2e-22 Score=168.23 Aligned_cols=73 Identities=10% Similarity=0.100 Sum_probs=59.3
Q ss_pred CccHHHHHHHHHHHhcCC--CEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceeeecc----
Q 027392 71 EPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLI---- 137 (224)
Q Consensus 71 ~~g~~qr~~la~al~~~p--~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~---- 137 (224)
|+||+||+++|++++.+| ++|||||||++||... +.+++++|.|+|++||+++++ .+||+++. +.
T Consensus 139 SgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~-~~~d~i~~-l~~~~~ 216 (226)
T cd03270 139 SGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTI-RAADHVID-IGPGAG 216 (226)
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHH-HhCCEEEE-eCCCcc
Confidence 689999999999999998 5999999999999543 345556789999999999876 48999973 31
Q ss_pred -CCeeEEEc
Q 027392 138 -GGVDTVTL 145 (224)
Q Consensus 138 -~~~~~v~~ 145 (224)
++|++|..
T Consensus 217 ~~~G~iv~~ 225 (226)
T cd03270 217 VHGGEIVAQ 225 (226)
T ss_pred ccCCEEEec
Confidence 55666654
No 329
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.89 E-value=1.4e-22 Score=186.91 Aligned_cols=133 Identities=14% Similarity=0.236 Sum_probs=100.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCC--------eEEEEcCCC-cccCCC--------Cc----ccchhh
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------RVVIVDTSN-EIGGDG--------DI----PHSAIG 62 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~--------~i~~~~~~~-~~~~~~--------~~----~~~~~~ 62 (224)
-.|.+|+.++|+||||+|||||||+|+|.+.|. .| ++.|++|.. ...... .. ......
T Consensus 343 ~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~ 421 (530)
T COG0488 343 FRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRA 421 (530)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHH
Confidence 368899999999999999999999999988877 34 345666643 111100 01 011111
Q ss_pred HH-----------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHH----HHHcCCEEEEEEeCcchHHh
Q 027392 63 TA-----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEWLENI 127 (224)
Q Consensus 63 ~~-----------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~----~~~~g~tvi~~tH~~~~~~~ 127 (224)
.. ..++..|||||.|+.||..++.+|.+|||||||+.||.+.+.. +.+...|||++|||..+.+.
T Consensus 422 ~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred HHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 12 2333458999999999999999999999999999999876654 34568899999999999999
Q ss_pred hccceeeeccC
Q 027392 128 IKNPILSDLIG 138 (224)
Q Consensus 128 ~~d~v~~~l~~ 138 (224)
+|++++. +.+
T Consensus 502 va~~i~~-~~~ 511 (530)
T COG0488 502 VATRIWL-VED 511 (530)
T ss_pred hcceEEE-EcC
Confidence 9999975 443
No 330
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.89 E-value=1.3e-22 Score=192.41 Aligned_cols=142 Identities=16% Similarity=0.187 Sum_probs=101.8
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-----------------------CCCcccCCCCcccch-
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------------------TSNEIGGDGDIPHSA- 60 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-----------------------~~~~~~~~~~~~~~~- 60 (224)
.+++||+++|+||||||||||+++|+|+++|+ .|.+.+.+ +...+.......++.
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 108 (648)
T PRK10535 30 DIYAGEMVAIVGASGSGKSTLMNILGCLDKPT-SGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVE 108 (648)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHH
Confidence 58999999999999999999999999999887 56555422 211111000000000
Q ss_pred -----------------hhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 61 -----------------IGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 61 -----------------~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
....+.+++ .|+||+||++||++++.+|++||||||+++||... ++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~ 188 (648)
T PRK10535 109 VPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILH 188 (648)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 001122222 36999999999999999999999999999999653 34
Q ss_pred HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHH
Q 027392 107 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 150 (224)
Q Consensus 107 ~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~ 150 (224)
++++++.|+|++||+.+..+ .||+++ .+.+++++..++.+.
T Consensus 189 ~l~~~g~tilivsH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~ 229 (648)
T PRK10535 189 QLRDRGHTVIIVTHDPQVAA-QAERVI--EIRDGEIVRNPPAQE 229 (648)
T ss_pred HHHhcCCEEEEECCCHHHHH-hCCEEE--EEECCEEEeecCccc
Confidence 55566899999999998775 699997 445577777766553
No 331
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.89 E-value=5.3e-23 Score=192.40 Aligned_cols=144 Identities=16% Similarity=0.221 Sum_probs=104.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCCCCcc-------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGDGDIP------- 57 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~~~~~------- 57 (224)
-.+++||.++|+||+|||||||++.|.+++.|+ .|.|.+.+ |+..++. ..+.
T Consensus 350 ~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~-~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~ 427 (567)
T COG1132 350 FSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT-SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR 427 (567)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC
Confidence 368999999999999999999999999999997 67777611 1111110 0000
Q ss_pred -----cchhhHH---------hHc------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------
Q 027392 58 -----HSAIGTA---------RRM------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------- 104 (224)
Q Consensus 58 -----~~~~~~~---------~~~------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~------- 104 (224)
++....+ ..+ ...|+|||||++||||+..+|++|||||||+++|.+.
T Consensus 428 ~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~ 507 (567)
T COG1132 428 PDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDA 507 (567)
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHH
Confidence 0111100 111 1136899999999999999999999999999999643
Q ss_pred HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 105 CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 105 ~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+.++. +++|+|+++|..+.... ||+++ ++++|+++..|+.++...
T Consensus 508 l~~l~-~~rT~iiIaHRlsti~~-aD~Ii--Vl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 508 LKKLL-KGRTTLIIAHRLSTIKN-ADRII--VLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHHh-cCCEEEEEeccHhHHHh-CCEEE--EEECCEEEEecCHHHHHH
Confidence 22233 46799999999986665 99998 556677999999887664
No 332
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=1.9e-22 Score=196.37 Aligned_cols=148 Identities=18% Similarity=0.220 Sum_probs=108.4
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc----------cc--------CCCCcccch----
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE----------IG--------GDGDIPHSA---- 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~----------~~--------~~~~~~~~~---- 60 (224)
+-.|++|+.++|+||+||||||+++.|.+++.|+ .|.|.+-+.+-. ++ +...+.++.
T Consensus 373 sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~-~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~ 451 (1228)
T KOG0055|consen 373 SLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT-SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGK 451 (1228)
T ss_pred EEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC-CceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCC
Confidence 4478999999999999999999999999999998 687776432210 10 000000000
Q ss_pred --------hhH-------------HhHc--------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---HHHH
Q 027392 61 --------IGT-------------ARRM--------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CRSI 108 (224)
Q Consensus 61 --------~~~-------------~~~~--------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~---~~~~ 108 (224)
... ...+ .-.|||||||++||||++.+|++|||||||++||.+. ++++
T Consensus 452 ~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~A 531 (1228)
T KOG0055|consen 452 PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEA 531 (1228)
T ss_pred CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHH
Confidence 000 0001 0147999999999999999999999999999999653 3332
Q ss_pred ---HHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHH
Q 027392 109 ---AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 154 (224)
Q Consensus 109 ---~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~ 154 (224)
...|.|.|+++|.++.... +|+++ +++.|++|+.|+.+++...
T Consensus 532 Ld~~~~grTTivVaHRLStIrn-aD~I~--v~~~G~IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 532 LDKASKGRTTIVVAHRLSTIRN-ADKIA--VMEEGKIVEQGTHDELIAL 577 (1228)
T ss_pred HHHhhcCCeEEEEeeehhhhhc-cCEEE--EEECCEEEEecCHHHHHhc
Confidence 3458899999999997765 99987 6777899999999886654
No 333
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.1e-22 Score=158.56 Aligned_cols=132 Identities=20% Similarity=0.293 Sum_probs=102.0
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCC----------------------Ccccc
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG----------------------DIPHS 59 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~----------------------~~~~~ 59 (224)
++-+++.||+++|-||+|||||||||+|-+-+.|+ +|.|.+-.+...+.... .+|.-
T Consensus 30 vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d-~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV 108 (235)
T COG4778 30 VSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD-EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRV 108 (235)
T ss_pred eeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC-CceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCc
Confidence 45589999999999999999999999999999999 68887754433221100 00000
Q ss_pred -----------------------hhhHHhHcCCC-----------CccHHHHHHHHHHHhcCCCEEEEeCCCChHh----
Q 027392 60 -----------------------AIGTARRMQVP-----------EPSLQHKVMIEAVENHMPEVIIVDEIGTEAE---- 101 (224)
Q Consensus 60 -----------------------~~~~~~~~~~~-----------~~g~~qr~~la~al~~~p~llilDEp~~~lD---- 101 (224)
......+++++ |||++||+.|||.++.+.++|+|||||+.||
T Consensus 109 ~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr 188 (235)
T COG4778 109 SALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNR 188 (235)
T ss_pred chHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccch
Confidence 00012333432 6999999999999999999999999999999
Q ss_pred ---HHHHHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 102 ---AHACRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 102 ---~~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
.+.+.+.+++|.++|.+-||.+.-+..|||++.
T Consensus 189 ~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~ 224 (235)
T COG4778 189 AVVVELIREAKARGAALVGIFHDEEVREAVADRLLD 224 (235)
T ss_pred HHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheee
Confidence 355677788999999999999988899999963
No 334
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.88 E-value=1.8e-22 Score=187.32 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=83.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE------------------EEcCCCcccCC----------CC
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------------------IVDTSNEIGGD----------GD 55 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~------------------~~~~~~~~~~~----------~~ 55 (224)
-.+++|+.++|+||+|||||||++.|+|+++|+ .|.|. +++|++.++.. ..
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~ 434 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL-QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPD 434 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCC
Confidence 368999999999999999999999999999998 56664 34443332211 00
Q ss_pred ccc-chhhHHhH---------------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH----HHHH
Q 027392 56 IPH-SAIGTARR---------------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC----RSIA 109 (224)
Q Consensus 56 ~~~-~~~~~~~~---------------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~----~~~~ 109 (224)
..+ +.....+. -...||||+||++||||+..+|++|||||||++||.+.- +.+.
T Consensus 435 ~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~ 514 (529)
T TIGR02868 435 ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLL 514 (529)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 000 00000110 011379999999999999999999999999999996542 2233
Q ss_pred H--cCCEEEEEEeCc
Q 027392 110 E--RGVMLIGTAHGE 122 (224)
Q Consensus 110 ~--~g~tvi~~tH~~ 122 (224)
+ .++|+|++||..
T Consensus 515 ~~~~~~TvIiItHrl 529 (529)
T TIGR02868 515 AALSGKTVVVITHHL 529 (529)
T ss_pred HhcCCCEEEEEecCC
Confidence 2 468999999973
No 335
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.88 E-value=4.5e-22 Score=174.36 Aligned_cols=155 Identities=17% Similarity=0.203 Sum_probs=113.8
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc----CCCeEEEEcCCC--------------cccCCC----------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVIVDTSN--------------EIGGDG---------- 54 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~----~~~~i~~~~~~~--------------~~~~~~---------- 54 (224)
+-.+.+||.++|+|.+|||||-..+.+.++++.. .+|++.|.+.+- .+....
T Consensus 30 sf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl 109 (534)
T COG4172 30 SFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPL 109 (534)
T ss_pred eeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcH
Confidence 4468999999999999999999999999999753 134555432210 010000
Q ss_pred -Ccccch-------------------hhHHhHcCC-------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHh
Q 027392 55 -DIPHSA-------------------IGTARRMQV-------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 101 (224)
Q Consensus 55 -~~~~~~-------------------~~~~~~~~~-------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD 101 (224)
.+-.+. ....+.+++ .||||+||++||.||+++|++||.||||+.||
T Consensus 110 ~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALD 189 (534)
T COG4172 110 HTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALD 189 (534)
T ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhh
Confidence 000000 011233333 26999999999999999999999999999999
Q ss_pred H-------HHHHHHH-HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHH
Q 027392 102 A-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSI 159 (224)
Q Consensus 102 ~-------~~~~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~ 159 (224)
. +.+++++ +.|..++++|||+.....++|++. ++..|++|..+..+.++..+....
T Consensus 190 VtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~--VM~~G~ivE~~~t~~lF~~PqHpY 253 (534)
T COG4172 190 VTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVY--VMQHGEIVETGTTETLFAAPQHPY 253 (534)
T ss_pred hhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEE--EEeccEEeecCcHHHHhhCCCChH
Confidence 4 3455665 559999999999999999999997 667788999999998887765443
No 336
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.88 E-value=3.5e-22 Score=186.25 Aligned_cols=138 Identities=12% Similarity=0.215 Sum_probs=96.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC-------------------CCcccCC----C--Cccc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-------------------SNEIGGD----G--DIPH 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~-------------------~~~~~~~----~--~~~~ 58 (224)
-.+++|+.++|+||||||||||+++|+|+++|+ .|.|.+.+. +..+... . ....
T Consensus 344 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~ 422 (547)
T PRK10522 344 LTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ-SGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANP 422 (547)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHH
Confidence 368999999999999999999999999999987 576655321 1111000 0 0000
Q ss_pred c-hhhHHhHc---------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----HH----HHcCCE
Q 027392 59 S-AIGTARRM---------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SI----AERGVM 114 (224)
Q Consensus 59 ~-~~~~~~~~---------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~~----~~~g~t 114 (224)
+ .....+.+ .-.|+||+||++||||++.+|++|||||||++||.+.-. .+ ++.+.|
T Consensus 423 ~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~t 502 (547)
T PRK10522 423 ALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKT 502 (547)
T ss_pred HHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 0 00000000 135789999999999999999999999999999965422 22 224799
Q ss_pred EEEEEeCcchHHhhccceeeeccCCeeEEEc
Q 027392 115 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 145 (224)
Q Consensus 115 vi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~ 145 (224)
+|++||+.+. ...||+++. + ++|+++..
T Consensus 503 vi~itH~~~~-~~~~d~i~~-l-~~G~i~e~ 530 (547)
T PRK10522 503 IFAISHDDHY-FIHADRLLE-M-RNGQLSEL 530 (547)
T ss_pred EEEEEechHH-HHhCCEEEE-E-ECCEEEEe
Confidence 9999999875 457999974 4 45666665
No 337
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.88 E-value=4.7e-22 Score=201.35 Aligned_cols=145 Identities=18% Similarity=0.209 Sum_probs=102.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCC---ccCCCeEEEE---------------cCCCcccCCCCc--------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLS---DEFQKRVVIV---------------DTSNEIGGDGDI-------- 56 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~---~~~~~~i~~~---------------~~~~~~~~~~~~-------- 56 (224)
+-.+++|++++|+|||||||||||++|+|+.+ ++ .|.|.+. .|.........+
T Consensus 783 s~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~-~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a 861 (1394)
T TIGR00956 783 DGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVIT-GGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSA 861 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcc-eeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHH
Confidence 34789999999999999999999999999986 33 4555442 221111000000
Q ss_pred ----ccc----h-----hhHHhHcC--------------CCCccHHHHHHHHHHHhcCCC-EEEEeCCCChHhHH-----
Q 027392 57 ----PHS----A-----IGTARRMQ--------------VPEPSLQHKVMIEAVENHMPE-VIIVDEIGTEAEAH----- 103 (224)
Q Consensus 57 ----~~~----~-----~~~~~~~~--------------~~~~g~~qr~~la~al~~~p~-llilDEp~~~lD~~----- 103 (224)
+.. . ....+.++ -.|+|||||++||++|+.+|+ +|+|||||++||..
T Consensus 862 ~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i 941 (1394)
T TIGR00956 862 YLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSI 941 (1394)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHH
Confidence 000 0 00011111 247899999999999999997 99999999999953
Q ss_pred --HHHHHHHcCCEEEEEEeCcch-HHhhccceeeeccCCeeEEEcCCHH
Q 027392 104 --ACRSIAERGVMLIGTAHGEWL-ENIIKNPILSDLIGGVDTVTLGDEE 149 (224)
Q Consensus 104 --~~~~~~~~g~tvi~~tH~~~~-~~~~~d~v~~~l~~~~~~v~~~~~~ 149 (224)
.+++++++|.|||+++|+.+. ....+|+++. |.+||+++..|+..
T Consensus 942 ~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~-L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 942 CKLMRKLADHGQAILCTIHQPSAILFEEFDRLLL-LQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEE-EcCCCEEEEECCcc
Confidence 345666779999999999875 3467899974 65566888887764
No 338
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.88 E-value=3.9e-22 Score=185.11 Aligned_cols=128 Identities=13% Similarity=0.144 Sum_probs=91.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCC----------C
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGD----------G 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~----------~ 54 (224)
-.+++|+.++|+||||||||||+|+|+|+++|+ .|.|.+.+ |+..++.. .
T Consensus 343 l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~ 421 (529)
T TIGR02857 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT-EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP 421 (529)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCC
Confidence 368999999999999999999999999999988 56665432 22211110 0
Q ss_pred Cccc-chhhHHhH---------------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----HH
Q 027392 55 DIPH-SAIGTARR---------------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SI 108 (224)
Q Consensus 55 ~~~~-~~~~~~~~---------------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~~ 108 (224)
...+ +.....+. -.-.||||+||+++||+++.+|+++||||||++||.+.-+ .+
T Consensus 422 ~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l 501 (529)
T TIGR02857 422 DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEAL 501 (529)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 0000 00010111 1123699999999999999999999999999999965422 22
Q ss_pred HH--cCCEEEEEEeCcchHHhhcccee
Q 027392 109 AE--RGVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 109 ~~--~g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
.+ +++|+|++||+.+.. ..||+++
T Consensus 502 ~~~~~~~t~i~itH~~~~~-~~~d~i~ 527 (529)
T TIGR02857 502 RALAQGRTVLLVTHRLALA-ERADRIV 527 (529)
T ss_pred HHhcCCCEEEEEecCHHHH-HhCCEEE
Confidence 22 578999999999866 4689885
No 339
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.88 E-value=1.3e-22 Score=189.41 Aligned_cols=137 Identities=15% Similarity=0.197 Sum_probs=96.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC----------cccCC--------CCcccc------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----------EIGGD--------GDIPHS------ 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~----------~~~~~--------~~~~~~------ 59 (224)
-.+++|++++|+||||||||||++.|+|++.|+ .|.|.+.+.+- .+.+. .....+
T Consensus 363 ~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~ 441 (555)
T TIGR01194 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ-EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHAS 441 (555)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchh
Confidence 378999999999999999999999999999998 67776532110 00000 000000
Q ss_pred ---hhhHHhHc----------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH--------HHHHcC
Q 027392 60 ---AIGTARRM----------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERG 112 (224)
Q Consensus 60 ---~~~~~~~~----------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~--------~~~~~g 112 (224)
.....+.+ ...|+||+||++|||+++.+|+++||||||++||.+.-+ .++..+
T Consensus 442 ~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~ 521 (555)
T TIGR01194 442 LDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQG 521 (555)
T ss_pred HHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence 00011111 124799999999999999999999999999999965321 223458
Q ss_pred CEEEEEEeCcchHHhhccceeeeccCCeeEEE
Q 027392 113 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 144 (224)
Q Consensus 113 ~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~ 144 (224)
+|+|++||+.+.. ..||+++. + ++|+++.
T Consensus 522 ~tiiiisH~~~~~-~~~d~i~~-l-~~G~i~~ 550 (555)
T TIGR01194 522 KTIIIISHDDQYF-ELADQIIK-L-AAGCIVK 550 (555)
T ss_pred CEEEEEeccHHHH-HhCCEEEE-E-ECCEEEE
Confidence 9999999998754 57999974 4 4455543
No 340
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2e-22 Score=187.06 Aligned_cols=147 Identities=18% Similarity=0.245 Sum_probs=105.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-------------------CCCcccCCCCcccch---
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-------------------TSNEIGGDGDIPHSA--- 60 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-------------------~~~~~~~~~~~~~~~--- 60 (224)
.-.|+|||+++|+||||+||||+.+.|.+++.|+ +|+|.+-+ |.+.++. ..+.+++
T Consensus 488 sfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt-sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG 565 (716)
T KOG0058|consen 488 SFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT-SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYG 565 (716)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC-CCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcC
Confidence 3478999999999999999999999999999998 67766522 2111110 1111111
Q ss_pred ---------hhHH---------------------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---HHH
Q 027392 61 ---------IGTA---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CRS 107 (224)
Q Consensus 61 ---------~~~~---------------------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~---~~~ 107 (224)
...+ ++=...|||||||++|||||+.+|.+|||||.|+.||.+. +++
T Consensus 566 ~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~ 645 (716)
T KOG0058|consen 566 LDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQE 645 (716)
T ss_pred CCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHH
Confidence 0000 0101236999999999999999999999999999999642 333
Q ss_pred HH---HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHH
Q 027392 108 IA---ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 154 (224)
Q Consensus 108 ~~---~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~ 154 (224)
.. -++.|||++.|.++-++ -||+|+ ++++|++++.|+-+++...
T Consensus 646 aL~~~~~~rTVlvIAHRLSTV~-~Ad~Iv--vi~~G~V~E~G~h~eLl~~ 692 (716)
T KOG0058|consen 646 ALDRLMQGRTVLVIAHRLSTVR-HADQIV--VIDKGRVVEMGTHDELLSK 692 (716)
T ss_pred HHHHhhcCCeEEEEehhhhHhh-hccEEE--EEcCCeEEecccHHHHhhC
Confidence 32 23589999999998554 688886 6677899999877766543
No 341
>PLN03140 ABC transporter G family member; Provisional
Probab=99.88 E-value=5e-22 Score=201.23 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=102.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCc-cCCCeEEE----------------EcCCCcccCCC-----------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-EFQKRVVI----------------VDTSNEIGGDG----------- 54 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~-~~~~~i~~----------------~~~~~~~~~~~----------- 54 (224)
+-.+++|++++|+|||||||||||++|+|...+ ...|.+.+ +.|........
T Consensus 900 s~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~ 979 (1470)
T PLN03140 900 TGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAF 979 (1470)
T ss_pred EEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHH
Confidence 347899999999999999999999999998753 11344443 22221111000
Q ss_pred -Cccc----ch-----hhHHhHc---------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH------
Q 027392 55 -DIPH----SA-----IGTARRM---------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH------ 103 (224)
Q Consensus 55 -~~~~----~~-----~~~~~~~---------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~------ 103 (224)
..+. .. ....+.+ .-.|+|||||+.||++|+.+|++|+|||||++||..
T Consensus 980 lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~ 1059 (1470)
T PLN03140 980 LRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1059 (1470)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Confidence 0000 00 0001111 124799999999999999999999999999999954
Q ss_pred -HHHHHHHcCCEEEEEEeCcc-hHHhhccceeeeccCCeeEEEcCCHH
Q 027392 104 -ACRSIAERGVMLIGTAHGEW-LENIIKNPILSDLIGGVDTVTLGDEE 149 (224)
Q Consensus 104 -~~~~~~~~g~tvi~~tH~~~-~~~~~~d~v~~~l~~~~~~v~~~~~~ 149 (224)
.+++++++|.|||+++|+.+ .....+|+++. |.++|+++..|+..
T Consensus 1060 ~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vll-L~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1060 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL-MKRGGQVIYSGPLG 1106 (1470)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEE-EcCCCEEEEECCcc
Confidence 34566677999999999987 45678999974 54467888887753
No 342
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=6.7e-22 Score=178.54 Aligned_cols=145 Identities=16% Similarity=0.184 Sum_probs=103.9
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-------------------cCCCcccCCCCccc-----
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-------------------DTSNEIGGDGDIPH----- 58 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-------------------~~~~~~~~~~~~~~----- 58 (224)
+=.|++||.++|+|+|||||||++|+|.++... +|+|.+- +|+..++.. .+.+
T Consensus 372 sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~--sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YG 448 (591)
T KOG0057|consen 372 SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDY--SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYG 448 (591)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHHHhcc--CCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcC
Confidence 346899999999999999999999999999983 4666553 332221110 0000
Q ss_pred -------chhhHH---------------------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH----HH
Q 027392 59 -------SAIGTA---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----CR 106 (224)
Q Consensus 59 -------~~~~~~---------------------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~----~~ 106 (224)
...... ++-...||||+||+++|||++.+|+++++||||+.||.+. ++
T Consensus 449 n~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~ 528 (591)
T KOG0057|consen 449 NPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILD 528 (591)
T ss_pred CCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHH
Confidence 011111 1222247999999999999999999999999999999543 33
Q ss_pred HHH--HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 107 SIA--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 107 ~~~--~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
.+. ..++|+|++-|+.+... -||+++ ++.+|++...|+-++...
T Consensus 529 ~i~~~~~~rTvI~IvH~l~ll~-~~DkI~--~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 529 MIMDVMSGRTVIMIVHRLDLLK-DFDKII--VLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHhcCCCeEEEEEecchhHh-cCCEEE--EEECCeeEEeccHHHHhh
Confidence 332 45899999999999665 688887 455677888888776653
No 343
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.87 E-value=5.4e-22 Score=193.59 Aligned_cols=155 Identities=15% Similarity=0.134 Sum_probs=114.1
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc--------ccCCCCcccch-------------
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE--------IGGDGDIPHSA------------- 60 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~--------~~~~~~~~~~~------------- 60 (224)
++=+|++||++|++|+|||||||+++++.|..+|+ +|.+.+.+.+-. ....++.|+..
T Consensus 584 ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t-~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~ 662 (885)
T KOG0059|consen 584 LSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT-SGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLE 662 (885)
T ss_pred eEEEecCCceEEEecCCCCCchhhHHHHhCCccCC-cceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHH
Confidence 34589999999999999999999999999999998 677665221110 00011222110
Q ss_pred -----------------hhHHh----------HcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HH
Q 027392 61 -----------------IGTAR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 106 (224)
Q Consensus 61 -----------------~~~~~----------~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~ 106 (224)
....+ ..+..|+|+++|+.+|.|++.+|++++||||++|+|+.. +.
T Consensus 663 ~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~ 742 (885)
T KOG0059|consen 663 FYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIA 742 (885)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHH
Confidence 00011 223347999999999999999999999999999999654 45
Q ss_pred HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhhHHHHhhcCCCc
Q 027392 107 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERKAPPT 167 (224)
Q Consensus 107 ~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 167 (224)
+++++|+.+|+|||.|++++.+|+|+. ++-.|++..+|.+.. ++++|+..-
T Consensus 743 ~~~k~g~aiiLTSHsMeE~EaLCtR~a--Imv~G~l~ciGs~q~--------LKsrfG~gy 793 (885)
T KOG0059|consen 743 RLRKNGKAIILTSHSMEEAEALCTRTA--IMVIGQLRCIGSPQE--------LKSRYGSGY 793 (885)
T ss_pred HHHhcCCEEEEEcCCHHHHHHHhhhhh--eeecCeeEEecChHH--------HHhhcCCcE
Confidence 667777799999999999999999995 455577888877654 456676643
No 344
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.7e-21 Score=159.80 Aligned_cols=144 Identities=19% Similarity=0.164 Sum_probs=103.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc-CCCeEEEEcCCC------c-----ccCCCCcccch-----------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSN------E-----IGGDGDIPHSA----------- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~-~~~~i~~~~~~~------~-----~~~~~~~~~~~----------- 60 (224)
-.|++||+.+|.||||||||||.++|+|.-.+. .+|+|.+-.++- + ++.....|..+
T Consensus 25 L~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~ 104 (251)
T COG0396 25 LTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRA 104 (251)
T ss_pred eeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHH
Confidence 468999999999999999999999999986432 256776643320 0 00000011000
Q ss_pred -------------------hhHHhHcCC------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-----
Q 027392 61 -------------------IGTARRMQV------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----- 104 (224)
Q Consensus 61 -------------------~~~~~~~~~------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~----- 104 (224)
...++.+++ .|||+++|..|+.+++.+|++.|||||.||||..+
T Consensus 105 a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~ 184 (251)
T COG0396 105 AMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVA 184 (251)
T ss_pred HHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHH
Confidence 001111222 26999999999999999999999999999999765
Q ss_pred --HHHHHHcCCEEEEEEeCcchHHhhc-cceeeeccCCeeEEEcCCHH
Q 027392 105 --CRSIAERGVMLIGTAHGEWLENIIK-NPILSDLIGGVDTVTLGDEE 149 (224)
Q Consensus 105 --~~~~~~~g~tvi~~tH~~~~~~~~~-d~v~~~l~~~~~~v~~~~~~ 149 (224)
++++++.+.+++++||.....+.+. |++ |++-+|++|..|+++
T Consensus 185 ~~i~~lr~~~~~~liITHy~rll~~i~pD~v--hvl~~GrIv~sG~~e 230 (251)
T COG0396 185 EGINALREEGRGVLIITHYQRLLDYIKPDKV--HVLYDGRIVKSGDPE 230 (251)
T ss_pred HHHHHHhcCCCeEEEEecHHHHHhhcCCCEE--EEEECCEEEecCCHH
Confidence 4567788999999999998777664 444 466678999999994
No 345
>PLN03130 ABC transporter C family member; Provisional
Probab=99.87 E-value=6.2e-22 Score=202.53 Aligned_cols=146 Identities=15% Similarity=0.205 Sum_probs=106.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCCCCcc------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGDGDIP------ 57 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~~~~~------ 57 (224)
+-.|++||.++|+|++|||||||+++|.|++.|+ .|.|.+ ++|++.++. +.+.
T Consensus 1259 s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~-~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~-GTIreNLd~~ 1336 (1622)
T PLN03130 1259 SFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE-RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFS-GTVRFNLDPF 1336 (1622)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC-CceEEECCEecccCCHHHHHhccEEECCCCcccc-ccHHHHhCcC
Confidence 3478999999999999999999999999999987 566654 223222211 0110
Q ss_pred -----cchhhHHhHc---------------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---HHH-
Q 027392 58 -----HSAIGTARRM---------------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CRS- 107 (224)
Q Consensus 58 -----~~~~~~~~~~---------------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~---~~~- 107 (224)
.+.....+.. .-.|+|||||++||||++.+|++|||||||+++|.+. +++
T Consensus 1337 ~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~ 1416 (1622)
T PLN03130 1337 NEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKT 1416 (1622)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 0111111111 1236899999999999999999999999999999643 222
Q ss_pred HHH--cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 108 IAE--RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 108 ~~~--~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+++ +++|+|+++|..+... -||+++ ++++|++++.|+++++..
T Consensus 1417 I~~~~~~~TvI~IAHRL~tI~-~~DrIl--VLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1417 IREEFKSCTMLIIAHRLNTII-DCDRIL--VLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHHCCCCEEEEEeCChHHHH-hCCEEE--EEECCEEEEeCCHHHHHh
Confidence 222 3789999999998665 589997 556788999999988764
No 346
>PLN03232 ABC transporter C family member; Provisional
Probab=99.87 E-value=8.4e-22 Score=200.92 Aligned_cols=147 Identities=14% Similarity=0.173 Sum_probs=106.0
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-------------------cCCCcccCC---------C
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-------------------DTSNEIGGD---------G 54 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-------------------~~~~~~~~~---------~ 54 (224)
+-.|++||.++|+|++|||||||+++|.|++.|+ +|+|.+. +|++.++.. .
T Consensus 1256 sl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~-~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~ 1334 (1495)
T PLN03232 1256 SFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE-KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS 1334 (1495)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC
Confidence 3478999999999999999999999999999988 5766542 232222110 0
Q ss_pred Ccc-cchhhHHhHc---------------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---HHH-H
Q 027392 55 DIP-HSAIGTARRM---------------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CRS-I 108 (224)
Q Consensus 55 ~~~-~~~~~~~~~~---------------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~---~~~-~ 108 (224)
... .+.....+.. .-.|+|||||++||||++++|++|||||||+++|.+. +++ +
T Consensus 1335 ~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L 1414 (1495)
T PLN03232 1335 EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTI 1414 (1495)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 000 0111111111 1136899999999999999999999999999999653 222 2
Q ss_pred HH--cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 109 AE--RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 109 ~~--~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
++ +++|+|+++|..+... -||+++ ++++|++++.|++++...
T Consensus 1415 ~~~~~~~TvI~IAHRl~ti~-~~DrIl--VL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1415 REEFKSCTMLVIAHRLNTII-DCDKIL--VLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HHHcCCCEEEEEeCCHHHHH-hCCEEE--EEECCEEEEECCHHHHHh
Confidence 22 4789999999998665 589998 556688999999988664
No 347
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.87 E-value=1.3e-21 Score=198.66 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=56.1
Q ss_pred CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHH-cCCEEEEEEeCcchHHhhccceeeeccC
Q 027392 70 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIG 138 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~~~l~~ 138 (224)
.|+||+||++||||++.+|++|||||||++||... +.++.+ .|.|+|+++|+++.. ..||+++. |.+
T Consensus 580 LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iiv-l~~ 654 (1466)
T PTZ00265 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFV-LSN 654 (1466)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEE-EeC
Confidence 47999999999999999999999999999999543 344443 489999999999876 58999975 544
No 348
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=2.2e-22 Score=161.41 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=105.7
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc------------ccCCCCcc---------cch
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE------------IGGDGDIP---------HSA 60 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~------------~~~~~~~~---------~~~ 60 (224)
++-.+.+||.-+|+|||||||||++-.|+|..+|+ .|++.+.++... ++.....| ++.
T Consensus 24 ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~-~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNL 102 (249)
T COG4674 24 LSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ-EGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENL 102 (249)
T ss_pred eEEEecCCeEEEEECCCCCCceeeeeeecccCCCC-cceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHH
Confidence 34578999999999999999999999999999998 688877552211 00000000 000
Q ss_pred ----------h----h------------HH----------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHh-HH
Q 027392 61 ----------I----G------------TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE-AH 103 (224)
Q Consensus 61 ----------~----~------------~~----------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD-~~ 103 (224)
+ . .. ......|.||+|++.|...++++|++|++|||.+|+- .+
T Consensus 103 elA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~E 182 (249)
T COG4674 103 ELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAE 182 (249)
T ss_pred HHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHH
Confidence 0 0 00 1112346899999999999999999999999999874 22
Q ss_pred ------HHHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 104 ------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 104 ------~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
.++.+ +..++|+++.|||.+...+++++- .++.|.+...|+-+.+.
T Consensus 183 t~~taeLl~~l-a~~hsilVVEHDM~Fvr~~A~~VT--Vlh~G~VL~EGsld~v~ 234 (249)
T COG4674 183 TEKTAELLKSL-AGKHSILVVEHDMGFVREIADKVT--VLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred HHHHHHHHHHH-hcCceEEEEeccHHHHHHhhheeE--EEeccceeecccHHHhh
Confidence 23333 345899999999999999999995 55667777777766543
No 349
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.86 E-value=1.8e-21 Score=198.35 Aligned_cols=144 Identities=13% Similarity=0.064 Sum_probs=104.0
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCe------EEEEcCCCcccCC---------CCccc----chhh---
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR------VVIVDTSNEIGGD---------GDIPH----SAIG--- 62 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~------i~~~~~~~~~~~~---------~~~~~----~~~~--- 62 (224)
.|++|++++|+|||||||||||++|+|+++|+ .|. +.|+.|...+... ..+.. ....
T Consensus 448 ~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~-~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~ 526 (1490)
T TIGR01271 448 KLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS-EGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQ 526 (1490)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHh
Confidence 68899999999999999999999999999987 454 4566665433211 00100 0000
Q ss_pred HHh---------------HcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHHH-----H--HcCCEEEEEEe
Q 027392 63 TAR---------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI-----A--ERGVMLIGTAH 120 (224)
Q Consensus 63 ~~~---------------~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~~-----~--~~g~tvi~~tH 120 (224)
..+ +..-.|||||||++||||+..+|+++|||||+++||....+.+ . .+++|+|++||
T Consensus 527 L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH 606 (1490)
T TIGR01271 527 LEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTS 606 (1490)
T ss_pred HHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 000 1122479999999999999999999999999999996542211 1 24789999999
Q ss_pred CcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 121 GEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 121 ~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++.... .||+++ ++.+|+++..|+.+...
T Consensus 607 ~~~~~~-~ad~ii--~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 607 KLEHLK-KADKIL--LLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred ChHHHH-hCCEEE--EEECCEEEEEcCHHHHH
Confidence 998776 599997 44567788888877654
No 350
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.8e-21 Score=154.10 Aligned_cols=119 Identities=19% Similarity=0.178 Sum_probs=86.6
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCccc---------CCC---------Ccccc------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG---------GDG---------DIPHS------ 59 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~---------~~~---------~~~~~------ 59 (224)
=++.+||++-|.||||||||||||+|+|++.|+ .|.|.+.+...... +.+ ...++
T Consensus 23 f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~-~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~ 101 (209)
T COG4133 23 FTLNAGEALQITGPNGAGKTTLLRILAGLLRPD-AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQR 101 (209)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC-CCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHH
Confidence 378999999999999999999999999999998 78888753321110 000 00000
Q ss_pred ---------hhhHHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHH-------HHHcCC
Q 027392 60 ---------AIGTARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS-------IAERGV 113 (224)
Q Consensus 60 ---------~~~~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~-------~~~~g~ 113 (224)
.......+++ .|.|||+|++||+.++..+++.|||||++++|.+.... =..+|.
T Consensus 102 ~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GG 181 (209)
T COG4133 102 FHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGG 181 (209)
T ss_pred HhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCC
Confidence 0111223332 36899999999999999999999999999999654322 135688
Q ss_pred EEEEEEeCcc
Q 027392 114 MLIGTAHGEW 123 (224)
Q Consensus 114 tvi~~tH~~~ 123 (224)
.||.+||..-
T Consensus 182 iVllttHq~l 191 (209)
T COG4133 182 IVLLTTHQPL 191 (209)
T ss_pred EEEEecCCcc
Confidence 9999999964
No 351
>PLN03140 ABC transporter G family member; Provisional
Probab=99.86 E-value=1.6e-21 Score=197.51 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=67.0
Q ss_pred CccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------HHHHHHH-cCCEEEEEEeCc-chHHhhccceeeeccCCee
Q 027392 71 EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAE-RGVMLIGTAHGE-WLENIIKNPILSDLIGGVD 141 (224)
Q Consensus 71 ~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~~~~~~~-~g~tvi~~tH~~-~~~~~~~d~v~~~l~~~~~ 141 (224)
|||||||+.+|++++.+|+++++||||+|||.. .++++++ .|.|+|+++|+. .++..++|+++ ++.+|+
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vi--lL~~G~ 415 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDII--LLSEGQ 415 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEE--EeeCce
Confidence 699999999999999999999999999999953 3455544 589999999985 57788999997 556688
Q ss_pred EEEcCCHHHHH
Q 027392 142 TVTLGDEEARA 152 (224)
Q Consensus 142 ~v~~~~~~~~~ 152 (224)
++..|+.+...
T Consensus 416 ivy~G~~~~~~ 426 (1470)
T PLN03140 416 IVYQGPRDHIL 426 (1470)
T ss_pred EEEeCCHHHHH
Confidence 88888877654
No 352
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.86 E-value=1.9e-21 Score=197.44 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=63.2
Q ss_pred CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH-HcCCEEEEEEeCcchHHhhccceeeeccCC--
Q 027392 70 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGG-- 139 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~-- 139 (224)
.||||+||++|||||+.+|++|||||||++||.+. +.++. .+++|+|+++|.++.. ..||+++. +.++
T Consensus 1359 LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti-~~aD~Ivv-l~~~~~ 1436 (1466)
T PTZ00265 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASI-KRSDKIVV-FNNPDR 1436 (1466)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHH-HhCCEEEE-EeCCCC
Confidence 36999999999999999999999999999999543 23332 2479999999999755 46999985 5541
Q ss_pred -eeEE-EcCCHHHHH
Q 027392 140 -VDTV-TLGDEEARA 152 (224)
Q Consensus 140 -~~~v-~~~~~~~~~ 152 (224)
|+++ ..|+-+++.
T Consensus 1437 ~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1437 TGSFVQAHGTHEELL 1451 (1466)
T ss_pred CCCEEEEecCHHHHH
Confidence 6644 677766654
No 353
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.86 E-value=3.5e-21 Score=195.07 Aligned_cols=146 Identities=12% Similarity=0.087 Sum_probs=103.6
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCC----ccCCCeEEEE------------------cCCCcccCCC------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLS----DEFQKRVVIV------------------DTSNEIGGDG------ 54 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~----~~~~~~i~~~------------------~~~~~~~~~~------ 54 (224)
+-.+++||+++|+||||||||||||+|+|+.. +. .|.|.+. .|........
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~-~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l 159 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGV-EGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETL 159 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCc-eeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHH
Confidence 34789999999999999999999999999862 33 4555542 2221111000
Q ss_pred ------Ccc--------c-ch----hh-HHhHcCC---------------CCccHHHHHHHHHHHhcCCCEEEEeCCCCh
Q 027392 55 ------DIP--------H-SA----IG-TARRMQV---------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTE 99 (224)
Q Consensus 55 ------~~~--------~-~~----~~-~~~~~~~---------------~~~g~~qr~~la~al~~~p~llilDEp~~~ 99 (224)
..+ . +. .. ..+.+++ .|||||||+.||++++.+|+++++||||++
T Consensus 160 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsg 239 (1394)
T TIGR00956 160 DFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRG 239 (1394)
T ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCC
Confidence 000 0 00 00 1122222 379999999999999999999999999999
Q ss_pred HhHH-------HHHHHHH-cCCEEEEEEeCc-chHHhhccceeeeccCCeeEEEcCCHHHH
Q 027392 100 AEAH-------ACRSIAE-RGVMLIGTAHGE-WLENIIKNPILSDLIGGVDTVTLGDEEAR 151 (224)
Q Consensus 100 lD~~-------~~~~~~~-~g~tvi~~tH~~-~~~~~~~d~v~~~l~~~~~~v~~~~~~~~ 151 (224)
||.. .++++++ .|.|+|+++|+. +.+..++|+++ ++.+|+++..|+++..
T Consensus 240 LD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~--~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 240 LDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVI--VLYEGYQIYFGPADKA 298 (1394)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEE--EEeCCeEEEECCHHHH
Confidence 9953 3556665 489999999995 67788999997 5566788888887754
No 354
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.86 E-value=2.4e-21 Score=158.54 Aligned_cols=127 Identities=12% Similarity=0.119 Sum_probs=84.1
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccC------------------------CCeEEEEcCCCcccCCCCcccch
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEF------------------------QKRVVIVDTSNEIGGDGDIPHSA 60 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~------------------------~~~i~~~~~~~~~~~~~~~~~~~ 60 (224)
.+.+| +++|+||||||||||+++|++++.+.. ...+.++.|.....+........
T Consensus 19 ~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~ 97 (197)
T cd03278 19 PFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDV 97 (197)
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhH
Confidence 46788 999999999999999999999875430 01223333322211000000000
Q ss_pred hhH-------HhHcCCCCccHHHHHHHHHHHh----cCCCEEEEeCCCChHhHHHH-------HHHHHcCCEEEEEEeCc
Q 027392 61 IGT-------ARRMQVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGE 122 (224)
Q Consensus 61 ~~~-------~~~~~~~~~g~~qr~~la~al~----~~p~llilDEp~~~lD~~~~-------~~~~~~g~tvi~~tH~~ 122 (224)
... .....-.|+||+||+++|++++ ..|+++++|||+++||.... +++.+ +.|||++||++
T Consensus 98 ~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~ 176 (197)
T cd03278 98 SEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVITHRK 176 (197)
T ss_pred HHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH
Confidence 000 1112234799999999999986 46699999999999996543 33333 68999999999
Q ss_pred chHHhhccceee
Q 027392 123 WLENIIKNPILS 134 (224)
Q Consensus 123 ~~~~~~~d~v~~ 134 (224)
++. .+||+++.
T Consensus 177 ~~~-~~~d~v~~ 187 (197)
T cd03278 177 GTM-EAADRLYG 187 (197)
T ss_pred HHH-hhcceEEE
Confidence 876 57999864
No 355
>PTZ00243 ABC transporter; Provisional
Probab=99.86 E-value=3.9e-21 Score=196.29 Aligned_cols=144 Identities=14% Similarity=0.142 Sum_probs=104.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCe------EEEEcCCCcccCCCCcccch--------------hhH
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR------VVIVDTSNEIGGDGDIPHSA--------------IGT 63 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~------i~~~~~~~~~~~~~~~~~~~--------------~~~ 63 (224)
-.|++|++++|+||||||||||+++|+|++.|+ .|. +.|+.|...+.. ..+.++. ...
T Consensus 681 l~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~-~G~i~~~~~i~yv~Q~~~l~~-~Tv~enI~~~~~~~~~~~~~~~~~ 758 (1560)
T PTZ00243 681 VSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS-EGRVWAERSIAYVPQQAWIMN-ATVRGNILFFDEEDAARLADAVRV 758 (1560)
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCeEEEEeCCCccCC-CcHHHHHHcCChhhHHHHHHHHHH
Confidence 368999999999999999999999999999887 454 556666544321 1110000 000
Q ss_pred ------H------------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH----HHH---HHcCCEEEEE
Q 027392 64 ------A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC----RSI---AERGVMLIGT 118 (224)
Q Consensus 64 ------~------------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~----~~~---~~~g~tvi~~ 118 (224)
. ++..-.||||+||++||||+..+|+++|||||+++||.... +.+ ...|+|+|++
T Consensus 759 ~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlv 838 (1560)
T PTZ00243 759 SQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLA 838 (1560)
T ss_pred hhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 0 11122479999999999999999999999999999996532 221 1247899999
Q ss_pred EeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 119 AHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 119 tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
||+.+... .||+++ ++++|+++..|+.+...
T Consensus 839 TH~~~~~~-~ad~ii--~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 839 THQVHVVP-RADYVV--ALGDGRVEFSGSSADFM 869 (1560)
T ss_pred eCCHHHHH-hCCEEE--EEECCEEEEecCHHHHH
Confidence 99998774 699997 44567788888877654
No 356
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.86 E-value=5.4e-21 Score=195.26 Aligned_cols=147 Identities=12% Similarity=0.170 Sum_probs=106.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCC---------C
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGD---------G 54 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~---------~ 54 (224)
+-.|++||.++|+|++|||||||+++|.|++.|+ +|.|.+ ++|++.++.. .
T Consensus 1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~-~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~ 1384 (1522)
T TIGR00957 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA-EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS 1384 (1522)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC-CCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc
Confidence 3478999999999999999999999999999987 566654 3333222110 0
Q ss_pred Cccc-chhhHHhHc---------------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---HHH-H
Q 027392 55 DIPH-SAIGTARRM---------------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CRS-I 108 (224)
Q Consensus 55 ~~~~-~~~~~~~~~---------------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~---~~~-~ 108 (224)
.... +.....+.. .-.|+|||||++||||++.+|++|||||||+++|.+. +++ +
T Consensus 1385 ~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l 1464 (1522)
T TIGR00957 1385 QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTI 1464 (1522)
T ss_pred CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0000 111111111 1136899999999999999999999999999999653 222 2
Q ss_pred HH--cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 109 AE--RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 109 ~~--~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
++ +++|+|+++|..+... .||+++ .+++|++++.|++++...
T Consensus 1465 ~~~~~~~TvI~IAHRl~ti~-~~DrIl--Vld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1465 RTQFEDCTVLTIAHRLNTIM-DYTRVI--VLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHHcCCCEEEEEecCHHHHH-hCCEEE--EEECCEEEEECCHHHHHh
Confidence 22 4789999999998655 589997 556788999999988764
No 357
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.85 E-value=4.3e-21 Score=195.98 Aligned_cols=145 Identities=14% Similarity=0.181 Sum_probs=104.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCe------EEEEcCCCcccCC---------CCcccch----hhH-
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR------VVIVDTSNEIGGD---------GDIPHSA----IGT- 63 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~------i~~~~~~~~~~~~---------~~~~~~~----~~~- 63 (224)
-.+++|++++|+||||||||||+++|+|+++|+ .|. +.|+.|.+.+... ..+.... ...
T Consensus 659 l~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~-~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~ 737 (1522)
T TIGR00957 659 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEAC 737 (1522)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC-CcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHh
Confidence 368999999999999999999999999999887 454 4566665443210 0010000 000
Q ss_pred -----Hh------------HcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----HHH-----HcCCEEEE
Q 027392 64 -----AR------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIA-----ERGVMLIG 117 (224)
Q Consensus 64 -----~~------------~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~~~-----~~g~tvi~ 117 (224)
.. +-.-.||||+||++||||+..+|++++|||||++||....+ .+. .+++|+|+
T Consensus 738 ~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIl 817 (1522)
T TIGR00957 738 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRIL 817 (1522)
T ss_pred CCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEE
Confidence 00 11123799999999999999999999999999999965422 221 24689999
Q ss_pred EEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 118 TAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 118 ~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+||+.+.... ||+++ .+++|+++..|+.+...
T Consensus 818 vTH~~~~l~~-~D~ii--~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 818 VTHGISYLPQ-VDVII--VMSGGKISEMGSYQELL 849 (1522)
T ss_pred EeCChhhhhh-CCEEE--EecCCeEEeeCCHHHHH
Confidence 9999987765 99997 44567888888877654
No 358
>PLN03232 ABC transporter C family member; Provisional
Probab=99.85 E-value=6e-21 Score=194.72 Aligned_cols=146 Identities=16% Similarity=0.119 Sum_probs=106.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCC------CeEEEEcCCCcccCC---------CCcccc-hhhH----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------KRVVIVDTSNEIGGD---------GDIPHS-AIGT---- 63 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~------~~i~~~~~~~~~~~~---------~~~~~~-~~~~---- 63 (224)
-.+++|+.++|+||+|||||||++.|.|.++|..+ +.+.|+.|.+.+... ..+..+ ....
T Consensus 638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~ 717 (1495)
T PLN03232 638 LEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVT 717 (1495)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHh
Confidence 36899999999999999999999999999998732 346677776544321 011110 0000
Q ss_pred -----HhHc------------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH----HHH-H--HcCCEEEEEE
Q 027392 64 -----ARRM------------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC----RSI-A--ERGVMLIGTA 119 (224)
Q Consensus 64 -----~~~~------------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~----~~~-~--~~g~tvi~~t 119 (224)
...+ .-.|||||||++||||+..+|+++||||||++||.+.- +++ . .+++|+|++|
T Consensus 718 ~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvT 797 (1495)
T PLN03232 718 ALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVT 797 (1495)
T ss_pred CCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEE
Confidence 0011 11379999999999999999999999999999996532 232 2 2578999999
Q ss_pred eCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 120 HGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 120 H~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
|..+.. ..||+++ ++.+|+++..|+.+...
T Consensus 798 H~~~~l-~~aD~Ii--~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 798 NQLHFL-PLMDRII--LVSEGMIKEEGTFAELS 827 (1495)
T ss_pred CChhhH-HhCCEEE--EEeCCEEEEecCHHHHH
Confidence 999854 5699997 45667888888877654
No 359
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.85 E-value=8.5e-21 Score=193.42 Aligned_cols=144 Identities=15% Similarity=0.191 Sum_probs=104.1
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCCCCccc------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGDGDIPH------ 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~~~~~~------ 58 (224)
-.|++||.++|+|++|||||||+++|.|++. . +|.|.+ ++|++.++. +.+..
T Consensus 1240 ~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~-~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~-GTIR~NLdp~~ 1316 (1490)
T TIGR01271 1240 FSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T-EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFS-GTFRKNLDPYE 1316 (1490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C-CcEEEECCEEcccCCHHHHHhceEEEeCCCccCc-cCHHHHhCccc
Confidence 3789999999999999999999999999986 3 566654 333322221 11110
Q ss_pred -----chhhHHhHcC---------------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---H-HHH
Q 027392 59 -----SAIGTARRMQ---------------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---C-RSI 108 (224)
Q Consensus 59 -----~~~~~~~~~~---------------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~---~-~~~ 108 (224)
......+..+ -.|+||+||++||||++.+|++|||||||+++|.+. + +.+
T Consensus 1317 ~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L 1396 (1490)
T TIGR01271 1317 QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL 1396 (1490)
T ss_pred CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 1111111111 136899999999999999999999999999999653 2 223
Q ss_pred HH--cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 109 AE--RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 109 ~~--~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
.+ .++|||+++|.++... .||+++ ++++|+++..|++..+..
T Consensus 1397 ~~~~~~~TvI~IaHRl~ti~-~~DrIl--vL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1397 KQSFSNCTVILSEHRVEALL-ECQQFL--VIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HHHcCCCEEEEEecCHHHHH-hCCEEE--EEECCEEEEeCCHHHHHc
Confidence 22 3689999999998655 589997 556688999999988763
No 360
>PTZ00243 ABC transporter; Provisional
Probab=99.85 E-value=7.2e-21 Score=194.38 Aligned_cols=145 Identities=12% Similarity=0.131 Sum_probs=105.0
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEE-------------------cCCCcccCCCCccc------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-------------------DTSNEIGGDGDIPH------ 58 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~-------------------~~~~~~~~~~~~~~------ 58 (224)
-.|++||.++|+|++|||||||+++|.|++.|+ +|.|.+. +|++.++. +.+.+
T Consensus 1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~-~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~~ 1408 (1560)
T PTZ00243 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC-GGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPFL 1408 (1560)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEcccCCHHHHHhcceEECCCCcccc-ccHHHHhCccc
Confidence 368999999999999999999999999999987 5766542 22222211 11100
Q ss_pred -----chhhHHhHc---------------------CCCCccHHHHHHHHHHHhcC-CCEEEEeCCCChHhHHH---HHH-
Q 027392 59 -----SAIGTARRM---------------------QVPEPSLQHKVMIEAVENHM-PEVIIVDEIGTEAEAHA---CRS- 107 (224)
Q Consensus 59 -----~~~~~~~~~---------------------~~~~~g~~qr~~la~al~~~-p~llilDEp~~~lD~~~---~~~- 107 (224)
+....++.. .-.|+|||||++||||++++ |++|||||||+++|.+. +++
T Consensus 1409 ~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~ 1488 (1560)
T PTZ00243 1409 EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488 (1560)
T ss_pred CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 111111111 11368999999999999995 89999999999999653 222
Q ss_pred HHH--cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 108 IAE--RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 108 ~~~--~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
+.+ +++|+|+++|..+.. ..||+++ ++++|+++..|+++++..
T Consensus 1489 L~~~~~~~TvI~IAHRl~ti-~~~DrIl--VLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1489 VMSAFSAYTVITIAHRLHTV-AQYDKII--VMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred HHHHCCCCEEEEEeccHHHH-HhCCEEE--EEECCEEEEECCHHHHHh
Confidence 222 468999999999755 4689997 556688999999988764
No 361
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.85 E-value=1.1e-20 Score=177.83 Aligned_cols=148 Identities=17% Similarity=0.209 Sum_probs=103.8
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc--CCCeEEEEc----------------CCCcccCCC----------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE--FQKRVVIVD----------------TSNEIGGDG---------- 54 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~--~~~~i~~~~----------------~~~~~~~~~---------- 54 (224)
+-.+++||+.+|+||+||||||||++|+|..... ..|.|.+.+ |+..+....
T Consensus 50 sg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A 129 (613)
T KOG0061|consen 50 SGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSA 129 (613)
T ss_pred EEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHH
Confidence 3468999999999999999999999999999752 345555543 221111110
Q ss_pred --Ccccc-----hh----hHHhHcCC---------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhH------
Q 027392 55 --DIPHS-----AI----GTARRMQV---------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA------ 102 (224)
Q Consensus 55 --~~~~~-----~~----~~~~~~~~---------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~------ 102 (224)
..+.. .. .....+++ -|||||+|+++|.-++++|.+|++||||+|||.
T Consensus 130 ~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~v 209 (613)
T KOG0061|consen 130 LLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQV 209 (613)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHH
Confidence 11110 00 00111111 258999999999999999999999999999993
Q ss_pred -HHHHHHHHcCCEEEEEEeCcc-hHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 103 -HACRSIAERGVMLIGTAHGEW-LENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 103 -~~~~~~~~~g~tvi~~tH~~~-~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+.+++++++|+|||+|-|... ....+-|+++ ++..|+++..|.+....
T Consensus 210 v~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~--lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 210 VQLLKRLARSGRTVICTIHQPSSELFELFDKLL--LLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhh--hhcCCcEEEecCHHHHH
Confidence 456777878999999999953 3445667776 45556888888886543
No 362
>PLN03130 ABC transporter C family member; Provisional
Probab=99.85 E-value=1.1e-20 Score=193.37 Aligned_cols=146 Identities=16% Similarity=0.093 Sum_probs=105.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCC------eEEEEcCCCcccCC---------CCcccc-hhhH----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------RVVIVDTSNEIGGD---------GDIPHS-AIGT---- 63 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~------~i~~~~~~~~~~~~---------~~~~~~-~~~~---- 63 (224)
-.+++|+.++|+||+|||||||+++|.|.+++..+| .+.|+.|.+.+... ..+... ....
T Consensus 638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~ 717 (1622)
T PLN03130 638 LDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVT 717 (1622)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHh
Confidence 368999999999999999999999999999987313 45667666544321 011110 0000
Q ss_pred -----Hh------------HcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH----HHH-H--HcCCEEEEEE
Q 027392 64 -----AR------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC----RSI-A--ERGVMLIGTA 119 (224)
Q Consensus 64 -----~~------------~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~----~~~-~--~~g~tvi~~t 119 (224)
.+ +-.-.|||||||++||||+..+|+++||||||++||.+.- +++ . .+++|+|++|
T Consensus 718 ~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVT 797 (1622)
T PLN03130 718 ALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVT 797 (1622)
T ss_pred CcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEE
Confidence 00 1011379999999999999999999999999999996532 222 2 2578999999
Q ss_pred eCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 120 HGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 120 H~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
|..... ..||+++ .+++|+++..|+.+...
T Consensus 798 H~l~~l-~~aD~Ii--~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 798 NQLHFL-SQVDRII--LVHEGMIKEEGTYEELS 827 (1622)
T ss_pred CCHhHH-HhCCEEE--EEeCCEEEEeCCHHHHH
Confidence 999755 4689997 45668888888877654
No 363
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.84 E-value=8.8e-21 Score=156.84 Aligned_cols=65 Identities=15% Similarity=0.010 Sum_probs=55.3
Q ss_pred CCccHHHHHHHHHHHhc----------CCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccce
Q 027392 70 PEPSLQHKVMIEAVENH----------MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPI 132 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~----------~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v 132 (224)
.|+||+||+++|++++. +|+++|+|||+++||... +.++++++.|+|++||++++...+|+++
T Consensus 124 lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i 203 (213)
T cd03279 124 LSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRL 203 (213)
T ss_pred cCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEE
Confidence 47899999999999974 679999999999999643 3455556889999999999999999998
Q ss_pred ee
Q 027392 133 LS 134 (224)
Q Consensus 133 ~~ 134 (224)
+.
T Consensus 204 ~~ 205 (213)
T cd03279 204 EV 205 (213)
T ss_pred EE
Confidence 64
No 364
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=5.4e-21 Score=171.53 Aligned_cols=127 Identities=18% Similarity=0.214 Sum_probs=86.7
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcC---CccCCCeEEEEcC-------------------CCcccCCCCcccchhh
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVL---SDEFQKRVVIVDT-------------------SNEIGGDGDIPHSAIG 62 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l---~~~~~~~i~~~~~-------------------~~~~~~~~~~~~~~~~ 62 (224)
.+..|..+||+|+||+|||||||+|+.-- -+. ...+.-.+. ..++..... ...+..
T Consensus 102 ~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~v-eqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~-l~ei~~ 179 (582)
T KOG0062|consen 102 TLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHV-EQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLT-LEEIYD 179 (582)
T ss_pred eeecccccceeCCCCCcHHHHHHHHHhcCcCccCc-hhheeccchHHHhhhhhccHHHHHHHHhhhhhhccch-HHHHHH
Confidence 56789999999999999999999999711 111 011100000 000000000 000000
Q ss_pred -HHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----HHHHcCCEEEEEEeCcchHH
Q 027392 63 -TARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLEN 126 (224)
Q Consensus 63 -~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~~~~~g~tvi~~tH~~~~~~ 126 (224)
....+++ .|||+|.|++||||+..+||+|+|||||+.||...+. .+...+.|+|++|||..+.+
T Consensus 180 ~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn 259 (582)
T KOG0062|consen 180 KILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLN 259 (582)
T ss_pred HHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHH
Confidence 1112232 3799999999999999999999999999999976543 45567789999999999999
Q ss_pred hhcccee
Q 027392 127 IIKNPIL 133 (224)
Q Consensus 127 ~~~d~v~ 133 (224)
.+|..|+
T Consensus 260 ~V~tdII 266 (582)
T KOG0062|consen 260 TVCTDII 266 (582)
T ss_pred HHHHHHH
Confidence 9998886
No 365
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=1e-19 Score=154.81 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=61.5
Q ss_pred CccHHHHHHHHHHHhcC---CCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceeeecc---
Q 027392 71 EPSLQHKVMIEAVENHM---PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLI--- 137 (224)
Q Consensus 71 ~~g~~qr~~la~al~~~---p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~--- 137 (224)
|+||+||+.||++++.+ |+++||||||++||... +.++.++|.|+|+++|++++.. .||+++. +-
T Consensus 171 SgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~ii~-Lgp~~ 248 (261)
T cd03271 171 SGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWIID-LGPEG 248 (261)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEE-ecCCc
Confidence 69999999999999996 79999999999999543 3455667899999999998775 6999874 42
Q ss_pred --CCeeEEEcCC
Q 027392 138 --GGVDTVTLGD 147 (224)
Q Consensus 138 --~~~~~v~~~~ 147 (224)
.+|+++..|+
T Consensus 249 g~~~G~iv~~Gt 260 (261)
T cd03271 249 GDGGGQVVASGT 260 (261)
T ss_pred CCCCCEEEEeCC
Confidence 4677777654
No 366
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=4.2e-20 Score=142.93 Aligned_cols=131 Identities=14% Similarity=0.172 Sum_probs=91.3
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccC--CCeEE-----------------EEcCCCcccCCCCcccc---
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--QKRVV-----------------IVDTSNEIGGDGDIPHS--- 59 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~--~~~i~-----------------~~~~~~~~~~~~~~~~~--- 59 (224)
+..+|.+||++-|.||+|||||||+.-+.|.+.+++ .|++. ++.|+..++....+.++
T Consensus 21 ~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~f 100 (213)
T COG4136 21 VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLF 100 (213)
T ss_pred eeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEE
Confidence 345789999999999999999999999999997652 23333 33333222221111111
Q ss_pred -----hhh---------HHhHcCC----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH--------HH
Q 027392 60 -----AIG---------TARRMQV----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC--------RS 107 (224)
Q Consensus 60 -----~~~---------~~~~~~~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~--------~~ 107 (224)
..+ ..++.++ .||||+.|+++.|+|...|+.++||||++.||.... .+
T Consensus 101 Alp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~ 180 (213)
T COG4136 101 ALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSE 180 (213)
T ss_pred ecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHH
Confidence 111 1122222 269999999999999999999999999999996442 34
Q ss_pred HHHcCCEEEEEEeCcchHHhhcccee
Q 027392 108 IAERGVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 108 ~~~~g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
+.+.|...+.+|||...+. ...+++
T Consensus 181 ~r~agiPtv~VTHD~~Dvp-agsrVi 205 (213)
T COG4136 181 VRAAGIPTVQVTHDLQDVP-AGSRVI 205 (213)
T ss_pred HHhcCCCeEEEecccccCC-CCCeee
Confidence 5667999999999986554 555554
No 367
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.82 E-value=6.7e-20 Score=165.38 Aligned_cols=149 Identities=16% Similarity=0.173 Sum_probs=102.8
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCC--------C------------------Cc-c
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------G------------------DI-P 57 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~--------~------------------~~-~ 57 (224)
-+.+|+.++|+|+|||||||+|++|+|-..|. ..++.++.-..++... . .. .
T Consensus 97 El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~-p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d 175 (614)
T KOG0927|consen 97 ELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI-PEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACD 175 (614)
T ss_pred EecCCceEEEEcCCCCcHhHHHHHHhcCCCCC-CcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhcc
Confidence 36899999999999999999999999998775 2333222111111100 0 00 0
Q ss_pred c-----------------------chhh-----------HHhHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH
Q 027392 58 H-----------------------SAIG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 103 (224)
Q Consensus 58 ~-----------------------~~~~-----------~~~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~ 103 (224)
. +... ..+.+.-.|+|+++|++||++|..+|++|+|||||++||.+
T Consensus 176 ~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDle 255 (614)
T KOG0927|consen 176 DKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLE 255 (614)
T ss_pred chhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHH
Confidence 0 0000 01222224699999999999999999999999999999988
Q ss_pred HHH----HHHHcCC-EEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHhh
Q 027392 104 ACR----SIAERGV-MLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 156 (224)
Q Consensus 104 ~~~----~~~~~g~-tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~~ 156 (224)
++. .+.+... ++++++|..++...+|..|+. +.. .+.+.++++...+....
T Consensus 256 A~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~-l~~-kkl~~y~Gnydqy~~tr 311 (614)
T KOG0927|consen 256 AIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIH-LDN-KKLIYYEGNYDQYVKTR 311 (614)
T ss_pred HHHHHHHHHHhccCceEEEEecchhhhhhHhhhhhe-ecc-cceeeecCCHHHHhhHH
Confidence 753 3455555 899999999999999999975 544 34566666655554443
No 368
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.82 E-value=9e-20 Score=153.21 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=50.4
Q ss_pred CCccHHHHHHHHHHHh----cCCCEEEEeCCCChHhHHHH-------HHHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 70 PEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 70 ~~~g~~qr~~la~al~----~~p~llilDEp~~~lD~~~~-------~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
.|+||+||++||++++ .+|+++|+||||++||+... .++.+ +.++|+++|..+ ...+||+++.
T Consensus 159 lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~-~~~~~d~i~~ 232 (243)
T cd03272 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPE-LLEVADKFYG 232 (243)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHhhCCEEEE
Confidence 4689999999999996 35899999999999996543 33333 678888888865 6679999864
No 369
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.81 E-value=1.4e-19 Score=160.74 Aligned_cols=129 Identities=17% Similarity=0.226 Sum_probs=94.9
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCC----eEEEEcCCCcccCCCCccc------------chh-----h-
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----RVVIVDTSNEIGGDGDIPH------------SAI-----G- 62 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~----~i~~~~~~~~~~~~~~~~~------------~~~-----~- 62 (224)
.+..||+++++||||-||||+.++|||.+.|+.+. ++.|-+|.-...+...+.. ..+ .
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~p 442 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKP 442 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCc
Confidence 57789999999999999999999999999998431 3334332111001111100 000 0
Q ss_pred ------HHhHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------HHHHHH-HcCCEEEEEEeCcchHHhh
Q 027392 63 ------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIA-ERGVMLIGTAHGEWLENII 128 (224)
Q Consensus 63 ------~~~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~~~~~~-~~g~tvi~~tH~~~~~~~~ 128 (224)
..+.+.-.|||+.||+++|.+|..++|+.+||||++.||.+ +++.+. ++++|.+++.||.-+...+
T Consensus 443 l~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyv 522 (591)
T COG1245 443 LNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYV 522 (591)
T ss_pred cchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhh
Confidence 11334446899999999999999999999999999999954 455655 4578999999999999999
Q ss_pred cccee
Q 027392 129 KNPIL 133 (224)
Q Consensus 129 ~d~v~ 133 (224)
+|+++
T Consensus 523 sDr~i 527 (591)
T COG1245 523 SDRLI 527 (591)
T ss_pred hceEE
Confidence 99995
No 370
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.81 E-value=1.8e-19 Score=148.29 Aligned_cols=127 Identities=17% Similarity=0.143 Sum_probs=82.0
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHH----hcCCccCCC---------------eEEEEcCCCc---cc--CCCCcccch-
Q 027392 6 LHYGKSILFVGRPGVGKTTVMREIA----RVLSDEFQK---------------RVVIVDTSNE---IG--GDGDIPHSA- 60 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~----g~l~~~~~~---------------~i~~~~~~~~---~~--~~~~~~~~~- 60 (224)
+.+| +++|+||||||||||+++|. |...++.++ .+.+..+... +. .......+.
T Consensus 20 ~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~ 98 (204)
T cd03240 20 FFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVI 98 (204)
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhcee
Confidence 5566 99999999999999999995 777664210 1111111110 00 000000000
Q ss_pred ---hh----H-HhHcCCCCccHHHH------HHHHHHHhcCCCEEEEeCCCChHhHHHHH--------HHHHc-CCEEEE
Q 027392 61 ---IG----T-ARRMQVPEPSLQHK------VMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAER-GVMLIG 117 (224)
Q Consensus 61 ---~~----~-~~~~~~~~~g~~qr------~~la~al~~~p~llilDEp~~~lD~~~~~--------~~~~~-g~tvi~ 117 (224)
.+ . .+...-.|+||+|| ++++++++.+|+++++|||+++||..... +++++ +.++|+
T Consensus 99 ~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iii 178 (204)
T cd03240 99 FCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIV 178 (204)
T ss_pred eechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEE
Confidence 00 0 11223457899996 68899999999999999999999964433 23333 789999
Q ss_pred EEeCcchHHhhccceee
Q 027392 118 TAHGEWLENIIKNPILS 134 (224)
Q Consensus 118 ~tH~~~~~~~~~d~v~~ 134 (224)
+||+.++.. .||+++.
T Consensus 179 itH~~~~~~-~~d~i~~ 194 (204)
T cd03240 179 ITHDEELVD-AADHIYR 194 (204)
T ss_pred EEecHHHHh-hCCEEEE
Confidence 999988664 6888864
No 371
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=3.2e-19 Score=173.96 Aligned_cols=146 Identities=17% Similarity=0.208 Sum_probs=104.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC-------------------Cccc---------CC-C
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-------------------NEIG---------GD-G 54 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~-------------------~~~~---------~~-~ 54 (224)
-.+++|+.++|+||+||||||.+..|-+++.|+ .|.|.+-+.+ +.++ +. .
T Consensus 1011 l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~-~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~ 1089 (1228)
T KOG0055|consen 1011 LSIRAGQTVALVGPSGSGKSTVISLLERFYDPD-AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE 1089 (1228)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC-CCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC
Confidence 368999999999999999999999999999998 6777653221 1111 00 0
Q ss_pred Cccc-chhhHH---------------------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH---HHHHHH
Q 027392 55 DIPH-SAIGTA---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH---ACRSIA 109 (224)
Q Consensus 55 ~~~~-~~~~~~---------------------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~---~~~~~~ 109 (224)
..+. +....+ ++-.-.|||||||++||||++.+|++|||||.|+.||.+ .+++..
T Consensus 1090 ~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeAL 1169 (1228)
T KOG0055|consen 1090 EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEAL 1169 (1228)
T ss_pred CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHH
Confidence 0111 000000 111123699999999999999999999999999999954 344432
Q ss_pred ---HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 110 ---ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 110 ---~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
..|.|.|++.|.++-+ +.||.+. ++++|++++.|+-+.+..
T Consensus 1170 d~a~~gRT~IvIAHRLSTI-qnaD~I~--Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1170 DRAMEGRTTIVIAHRLSTI-QNADVIA--VLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHhhcCCcEEEEecchhhh-hcCCEEE--EEECCEEEecccHHHHHh
Confidence 3478999999999854 5788886 567788888887766553
No 372
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.80 E-value=5.2e-20 Score=141.25 Aligned_cols=94 Identities=15% Similarity=0.270 Sum_probs=65.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC-------------------CcccCCCCcccch----
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-------------------NEIGGDGDIPHSA---- 60 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~-------------------~~~~~~~~~~~~~---- 60 (224)
-.+++|++++|+|+||||||||+++|+|..+++ .|.+.+.+.. ..+.....+.++.
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~-~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~ 84 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD-SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDER 84 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTSSHES-EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHH
T ss_pred EEEcCCCEEEEEccCCCccccceeeeccccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 468999999999999999999999999999886 5766553210 0000000000000
Q ss_pred -hhH----------HhHc----CCCCccHHHHHHHHHHHhcCCCEEEEeCCCC
Q 027392 61 -IGT----------ARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 98 (224)
Q Consensus 61 -~~~----------~~~~----~~~~~g~~qr~~la~al~~~p~llilDEp~~ 98 (224)
... ...+ .-.|+||+||++||++++.+|+++||||||+
T Consensus 85 ~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 85 IEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 000 0111 3347999999999999999999999999996
No 373
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.78 E-value=1.2e-19 Score=143.70 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=103.5
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc------cc----C---C--------------CC
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE------IG----G---D--------------GD 55 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~------~~----~---~--------------~~ 55 (224)
+--+..||++-++||||||||||+-.++|+++. .|.|.+-..+-+ +. + . ..
T Consensus 19 S~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~--sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~ 96 (248)
T COG4138 19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH 96 (248)
T ss_pred ccccccceEEEEECCCCccHHHHHHHHhCCCCC--CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc
Confidence 446789999999999999999999999999975 477766433211 00 0 0 00
Q ss_pred cccchh-----hHH----------hHcCCCCccHHHHHHHHHHHhc-----C--CCEEEEeCCCChHhHH-------HHH
Q 027392 56 IPHSAI-----GTA----------RRMQVPEPSLQHKVMIEAVENH-----M--PEVIIVDEIGTEAEAH-------ACR 106 (224)
Q Consensus 56 ~~~~~~-----~~~----------~~~~~~~~g~~qr~~la~al~~-----~--p~llilDEp~~~lD~~-------~~~ 106 (224)
.|.+.. ... +.+.-.|||+.||+-+|..... | .++|++|||.++||.. .+.
T Consensus 97 qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~ 176 (248)
T COG4138 97 QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLS 176 (248)
T ss_pred CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHH
Confidence 011000 001 1222347999999999876553 3 3799999999999943 345
Q ss_pred HHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 107 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 107 ~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
++...|.+||+++||.+.-.+-+++++ +...|+++..|..++..
T Consensus 177 ~~c~~G~~vims~HDLNhTLrhA~~~w--LL~rG~l~~~G~~~eVl 220 (248)
T COG4138 177 ALCQQGLAIVMSSHDLNHTLRHAHRAW--LLKRGKLLASGRREEVL 220 (248)
T ss_pred HHHhCCcEEEEeccchhhHHHHHHHHH--HHhcCeEEeecchhhhc
Confidence 678889999999999988888899997 66667777777777654
No 374
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.78 E-value=8.3e-19 Score=158.35 Aligned_cols=133 Identities=16% Similarity=0.223 Sum_probs=95.4
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE--------EcCCC--cccCC--------CCccc-----chhh
Q 027392 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--------VDTSN--EIGGD--------GDIPH-----SAIG 62 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~--------~~~~~--~~~~~--------~~~~~-----~~~~ 62 (224)
+..++.++++||||+|||||||.+.|.+.|. .|.+.- +.|.. ..... ..++. ....
T Consensus 413 id~~srvAlVGPNG~GKsTLlKl~~gdl~p~-~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ 491 (614)
T KOG0927|consen 413 IDLDSRVALVGPNGAGKSTLLKLITGDLQPT-IGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRS 491 (614)
T ss_pred cCcccceeEecCCCCchhhhHHHHhhccccc-cccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHH
Confidence 5667999999999999999999999999998 454432 11111 11100 00110 0111
Q ss_pred HHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHHH----HHcCCEEEEEEeCcchHHh
Q 027392 63 TARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI----AERGVMLIGTAHGEWLENI 127 (224)
Q Consensus 63 ~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~~----~~~g~tvi~~tH~~~~~~~ 127 (224)
...++++ .|.|||.|+.+|+.+...|.+|+|||||++||.+.+..+ .+...+||++|||..++.+
T Consensus 492 ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~q 571 (614)
T KOG0927|consen 492 ILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQ 571 (614)
T ss_pred HHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHH
Confidence 2234444 368999999999999999999999999999997765443 3457799999999999999
Q ss_pred hccceeeeccCCe
Q 027392 128 IKNPILSDLIGGV 140 (224)
Q Consensus 128 ~~d~v~~~l~~~~ 140 (224)
++++++. ..++.
T Consensus 572 VaeEi~~-c~~~~ 583 (614)
T KOG0927|consen 572 VAEEIWV-CENGT 583 (614)
T ss_pred HHHHhHh-hccCc
Confidence 9999974 44433
No 375
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.77 E-value=1.2e-18 Score=142.71 Aligned_cols=130 Identities=12% Similarity=0.133 Sum_probs=83.6
Q ss_pred ceecCc-EEEEEcCCCCcHHHHHHHHH--------hcCCccCCC-eEEEEcCCCcccCCCCcccchhhHHhHcCCCCccH
Q 027392 5 LLHYGK-SILFVGRPGVGKTTVMREIA--------RVLSDEFQK-RVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSL 74 (224)
Q Consensus 5 ~i~~Ge-~~~l~G~nGsGKTTLl~~i~--------g~l~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 74 (224)
.+.+|+ +++|+||||||||||+|.|+ |...|.... .+.++++.... . ... -.....+...++||
T Consensus 23 ~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~--l-g~~---~~l~~~~s~fs~g~ 96 (200)
T cd03280 23 QLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFAD--I-GDE---QSIEQSLSTFSSHM 96 (200)
T ss_pred EECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEe--c-Cch---hhhhcCcchHHHHH
Confidence 467784 79999999999999999999 544443111 11111111000 0 000 00111223346799
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCChHhHHH--------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEE
Q 027392 75 QHKVMIEAVENHMPEVIIVDEIGTEAEAHA--------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 144 (224)
Q Consensus 75 ~qr~~la~al~~~p~llilDEp~~~lD~~~--------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~ 144 (224)
+|+..++++ +.+|+++++|||++++|... ++++.+.+.++|++||+.+ ...+|++++. + ..++++.
T Consensus 97 ~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~-l~~~~d~~~~-l-~~g~l~~ 170 (200)
T cd03280 97 KNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGE-LKAYAYKREG-V-ENASMEF 170 (200)
T ss_pred HHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHH-HHHHHhcCCC-e-EEEEEEE
Confidence 999888876 48999999999999999542 3445566899999999854 5678888853 3 3355443
No 376
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.77 E-value=3.3e-18 Score=144.76 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=50.2
Q ss_pred CccHHHHHHHHHHHh----cCCCEEEEeCCCChHhHHHHHH----HH--HcCCEEEEEEeCcchHHhhccceee
Q 027392 71 EPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHACRS----IA--ERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 71 ~~g~~qr~~la~al~----~~p~llilDEp~~~lD~~~~~~----~~--~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
|+||+||+++|++++ .+|+++++||||++||...... +. .+|.++|++||..+ ....||+++.
T Consensus 168 S~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~-~~~~~d~v~~ 240 (251)
T cd03273 168 SGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEG-MFNNANVLFR 240 (251)
T ss_pred CHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHhCCEEEE
Confidence 689999999999997 4789999999999999654322 21 24789999999965 4457999863
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.77 E-value=3e-18 Score=141.78 Aligned_cols=63 Identities=8% Similarity=0.019 Sum_probs=50.1
Q ss_pred CCccHHHHHHHHHHHhc----CCCEEEEeCCCChHhHHHHH-------HHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 70 PEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~----~p~llilDEp~~~lD~~~~~-------~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
.|+||+||+++|++++. .|+++++|||+++||+.... ++ .++.++|++||+.+ ...+||+++.
T Consensus 128 lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~-~~~~~~iivs~~~~-~~~~~d~v~~ 201 (212)
T cd03274 128 LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKER-TKNAQFIVISLRNN-MFELADRLVG 201 (212)
T ss_pred cCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHH-cCCCEEEEEECcHH-HHHhCCEEEE
Confidence 46899999999999963 47999999999999965432 33 24678899999965 6679999963
No 378
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.76 E-value=4.8e-18 Score=157.11 Aligned_cols=128 Identities=17% Similarity=0.274 Sum_probs=91.2
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCe--------EEEEcCCCcccCC------------CCcccc-hhhH
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR--------VVIVDTSNEIGGD------------GDIPHS-AIGT 63 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~--------i~~~~~~~~~~~~------------~~~~~~-~~~~ 63 (224)
.+++|+.+.|.||||||||||+|+|+|+.+.. .|+ +.|++|.+.+... ..+++. ....
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g-~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~v 493 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWPWG-SGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAV 493 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCccC-CCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHH
Confidence 58899999999999999999999999999754 343 4555655543321 001111 0111
Q ss_pred HhHcC----------------CCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH----HHHHH--cCCEEEEEEeC
Q 027392 64 ARRMQ----------------VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC----RSIAE--RGVMLIGTAHG 121 (224)
Q Consensus 64 ~~~~~----------------~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~----~~~~~--~g~tvi~~tH~ 121 (224)
..+++ +.|+|+|||+++||++.++|++++|||-|++||.+.- +.+++ .+.|||.++|.
T Consensus 494 L~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr 573 (604)
T COG4178 494 LHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573 (604)
T ss_pred HHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccc
Confidence 11111 2469999999999999999999999999999996543 33445 47899999999
Q ss_pred cchHHhhccceee
Q 027392 122 EWLENIIKNPILS 134 (224)
Q Consensus 122 ~~~~~~~~d~v~~ 134 (224)
... ..+.++.+.
T Consensus 574 ~tl-~~~h~~~l~ 585 (604)
T COG4178 574 PTL-WNFHSRQLE 585 (604)
T ss_pred hhh-HHHHhhhee
Confidence 874 456666544
No 379
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.75 E-value=5.7e-18 Score=143.07 Aligned_cols=64 Identities=9% Similarity=0.056 Sum_probs=52.5
Q ss_pred CCccHHHHHHHHHHHhcC----CCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 70 PEPSLQHKVMIEAVENHM----PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~~----p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
.|+||+||++||++++.+ |+++|+|||+++||... +.+++++|.++|++||+.++. ..||+++.
T Consensus 156 LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i~~ 230 (247)
T cd03275 156 LSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADALVG 230 (247)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeEEE
Confidence 368999999999999864 89999999999999643 344455588999999997754 67999864
No 380
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.74 E-value=9.7e-18 Score=149.10 Aligned_cols=128 Identities=20% Similarity=0.212 Sum_probs=91.4
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE---E-----EcCCCccc------------------CCCCccc
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV---I-----VDTSNEIG------------------GDGDIPH 58 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~---~-----~~~~~~~~------------------~~~~~~~ 58 (224)
...+|++++|+||||-||||.+|+|+|.+.|+.+..-. . .....+++ +...+|.
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk 175 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPK 175 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHH
Confidence 45789999999999999999999999999998421100 0 00000000 0000111
Q ss_pred chhh-----------------HH----------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhH-------HH
Q 027392 59 SAIG-----------------TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HA 104 (224)
Q Consensus 59 ~~~~-----------------~~----------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~-------~~ 104 (224)
...+ .. +.+.-.|||+.||++||+++..+.|+.++|||++-||. ..
T Consensus 176 ~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~ 255 (591)
T COG1245 176 VVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARV 255 (591)
T ss_pred HhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHH
Confidence 0000 01 12223479999999999999999999999999999994 35
Q ss_pred HHHHHHcCCEEEEEEeCcchHHhhccce
Q 027392 105 CRSIAERGVMLIGTAHGEWLENIIKNPI 132 (224)
Q Consensus 105 ~~~~~~~g~tvi~~tH~~~~~~~~~d~v 132 (224)
++++.+.+++||++.||+...+.++|-+
T Consensus 256 Irel~~~~k~ViVVEHDLavLD~lsD~v 283 (591)
T COG1245 256 IRELAEDGKYVIVVEHDLAVLDYLSDFV 283 (591)
T ss_pred HHHHhccCCeEEEEechHHHHHHhhhee
Confidence 6778877899999999999888889887
No 381
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.73 E-value=2.2e-17 Score=147.92 Aligned_cols=148 Identities=22% Similarity=0.253 Sum_probs=100.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcc-------cCCCCccc-----------------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI-------GGDGDIPH----------------- 58 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~-------~~~~~~~~----------------- 58 (224)
+=.+.+|+.++|+||+|+||||++|.+-++...+ .|.|.+-+|+-.. ...+.+|+
T Consensus 558 sF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~-sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak 636 (790)
T KOG0056|consen 558 SFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN-SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAK 636 (790)
T ss_pred eEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc-CceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecC
Confidence 4478999999999999999999999999999776 5666654442100 00001111
Q ss_pred ------chhhH---------------------HhHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH---HHHHH
Q 027392 59 ------SAIGT---------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH---ACRSI 108 (224)
Q Consensus 59 ------~~~~~---------------------~~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~---~~~~~ 108 (224)
..... .++--..|||+|||+++||+++.+|.+++|||.|+.||.. .++..
T Consensus 637 ~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaa 716 (790)
T KOG0056|consen 637 PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAA 716 (790)
T ss_pred CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHH
Confidence 00000 0110113699999999999999999999999999999942 23322
Q ss_pred H---HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHH
Q 027392 109 A---ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 154 (224)
Q Consensus 109 ~---~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~ 154 (224)
. -.+.|-|++.|.++-+ .-||.++ .+.+|++++-|.-++...+
T Consensus 717 L~rlca~RTtIVvAHRLSTi-vnAD~IL--vi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 717 LARLCANRTTIVVAHRLSTI-VNADLIL--VISNGRIVERGRHEELLKR 762 (790)
T ss_pred HHHHhcCCceEEEeeeehhe-ecccEEE--EEeCCeEeecCcHHHHHhc
Confidence 1 2367888999998743 3577887 4556778887776665543
No 382
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=2.8e-17 Score=163.41 Aligned_cols=148 Identities=13% Similarity=0.214 Sum_probs=107.1
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE-------------------EcCCCcccCCCCcc-----
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGDGDIP----- 57 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~-------------------~~~~~~~~~~~~~~----- 57 (224)
|+-.|++||.+||+|+.|||||||+++|-++..|. +|+|.+ ++|++.++. +.+.
T Consensus 1159 is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~-~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NLDP 1236 (1381)
T KOG0054|consen 1159 ISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPA-EGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNLDP 1236 (1381)
T ss_pred ceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCcc-CCeEEEcCeecccccHHHHHhcCeeeCCCCceec-CccccccCc
Confidence 34579999999999999999999999999999986 576654 233332221 1111
Q ss_pred ------cchhhHHhHcC-----------C----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH---HHHH
Q 027392 58 ------HSAIGTARRMQ-----------V----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH---ACRS 107 (224)
Q Consensus 58 ------~~~~~~~~~~~-----------~----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~---~~~~ 107 (224)
++.....++.+ + .|-||||.++||||++++.+||+|||.|++.|.+ .+++
T Consensus 1237 f~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~ 1316 (1381)
T KOG0054|consen 1237 FDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 1316 (1381)
T ss_pred ccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHH
Confidence 11111111111 1 1468999999999999999999999999999954 2443
Q ss_pred H-HH--cCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHH
Q 027392 108 I-AE--RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 154 (224)
Q Consensus 108 ~-~~--~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~ 154 (224)
. ++ .++||+.+.|..+-+. -||+++ +++.|+++++++|..++..
T Consensus 1317 tIR~~F~dcTVltIAHRl~TVm-d~DrVl--Vld~G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1317 TIREEFKDCTVLTIAHRLNTVM-DSDRVL--VLDAGRVVEFDSPAELLSD 1363 (1381)
T ss_pred HHHHHhcCCeEEEEeeccchhh-hcCeEE--EeeCCeEeecCChHHHHhC
Confidence 2 22 2689999999987543 588998 5677899999999987754
No 383
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.73 E-value=3.1e-17 Score=134.39 Aligned_cols=126 Identities=9% Similarity=0.051 Sum_probs=77.5
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccC------------------CCeEEEEcCCCcccCC--CCcccchh-hH-
Q 027392 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEF------------------QKRVVIVDTSNEIGGD--GDIPHSAI-GT- 63 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~------------------~~~i~~~~~~~~~~~~--~~~~~~~~-~~- 63 (224)
+.+| +.+|+||||||||||+.+|.-.+.... ...+.+..+....... ........ ..
T Consensus 19 f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (198)
T cd03276 19 FGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFL 97 (198)
T ss_pred cCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHh
Confidence 3444 779999999999999999985433210 0111111111111100 00000000 00
Q ss_pred ------HhHcCCCCccHHHHHHHHHHH----hcCCCEEEEeCCCChHhHHH-------HHHHHHc---CCEEEEEEeCcc
Q 027392 64 ------ARRMQVPEPSLQHKVMIEAVE----NHMPEVIIVDEIGTEAEAHA-------CRSIAER---GVMLIGTAHGEW 123 (224)
Q Consensus 64 ------~~~~~~~~~g~~qr~~la~al----~~~p~llilDEp~~~lD~~~-------~~~~~~~---g~tvi~~tH~~~ 123 (224)
.+...-.|+||+||+++|+++ +.+|+++|||||++++|... +.++.+. +.+||+++|+++
T Consensus 98 ~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~ 177 (198)
T cd03276 98 TSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS 177 (198)
T ss_pred ccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc
Confidence 112233479999999999999 58999999999999999643 3333332 358999999998
Q ss_pred hHHhhcccee
Q 027392 124 LENIIKNPIL 133 (224)
Q Consensus 124 ~~~~~~d~v~ 133 (224)
++..+ |++.
T Consensus 178 ~i~~~-d~v~ 186 (198)
T cd03276 178 GLASS-DDVK 186 (198)
T ss_pred ccccc-ccee
Confidence 88765 7763
No 384
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.5e-17 Score=141.93 Aligned_cols=147 Identities=20% Similarity=0.254 Sum_probs=103.8
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcc-------cCCCCcccc-----------h---
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI-------GGDGDIPHS-----------A--- 60 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~-------~~~~~~~~~-----------~--- 60 (224)
++-.+++|+.++++||+|+||||+++.|-+++.++ .|.|.+.+|+-.- ...+.+|+. .
T Consensus 282 isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~-sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~yg 360 (497)
T COG5265 282 ISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN-SGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYG 360 (497)
T ss_pred ccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc-CceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhcc
Confidence 35578999999999999999999999999999988 6887775543100 000111110 0
Q ss_pred ---------hhH---------------------HhHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH---HHH
Q 027392 61 ---------IGT---------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CRS 107 (224)
Q Consensus 61 ---------~~~---------------------~~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~---~~~ 107 (224)
... .++.-..|||+|||+++||+++.+|++|++||.|+.||.+. ++.
T Consensus 361 r~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~ 440 (497)
T COG5265 361 RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA 440 (497)
T ss_pred CccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH
Confidence 000 01111136999999999999999999999999999999543 221
Q ss_pred -H--HHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 108 -I--AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 108 -~--~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
+ ...|.|-+++.|.++-. .-||.++ .+++|++++.|+-+.+.
T Consensus 441 ~l~~~~~~rttlviahrlsti-~~adeii--vl~~g~i~erg~h~~ll 485 (497)
T COG5265 441 ALREVSAGRTTLVIAHRLSTI-IDADEII--VLDNGRIVERGTHEELL 485 (497)
T ss_pred HHHHHhCCCeEEEEeehhhhc-cCCceEE--EeeCCEEEecCcHHHHH
Confidence 2 24688999999998744 3577777 55667888887766655
No 385
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=4.7e-17 Score=161.78 Aligned_cols=146 Identities=15% Similarity=0.166 Sum_probs=106.2
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccC-----CCeEEEEcCCCcccC---------CCCcccchhhH-------
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-----QKRVVIVDTSNEIGG---------DGDIPHSAIGT------- 63 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~-----~~~i~~~~~~~~~~~---------~~~~~~~~~~~------- 63 (224)
.|++|+.++|+|+.|||||+||.+|.|.++... .|.+.|+.|.+.+.. ...+..+....
T Consensus 543 ~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L 622 (1381)
T KOG0054|consen 543 EIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACAL 622 (1381)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccC
Confidence 589999999999999999999999999998752 245567766544321 11111111000
Q ss_pred ---H------------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHH----HH---HHcCCEEEEEEeC
Q 027392 64 ---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SI---AERGVMLIGTAHG 121 (224)
Q Consensus 64 ---~------------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~----~~---~~~g~tvi~~tH~ 121 (224)
. ++---.|||||||++||||.-.+.|+++||.|.+.+|...-+ +. .-+++|+|++||.
T Consensus 623 ~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHq 702 (1381)
T KOG0054|consen 623 KKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQ 702 (1381)
T ss_pred HhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCc
Confidence 0 110113699999999999999999999999999999965422 22 2347899999998
Q ss_pred cchHHhhccceeeeccCCeeEEEcCCHHHHHH
Q 027392 122 EWLENIIKNPILSDLIGGVDTVTLGDEEARAR 153 (224)
Q Consensus 122 ~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~ 153 (224)
..+. .-||.++ ++++|+++..|+-++...
T Consensus 703 l~~L-~~ad~Ii--vl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 703 LQFL-PHADQII--VLKDGKIVESGTYEELLK 731 (1381)
T ss_pred hhhh-hhCCEEE--EecCCeEecccCHHHHHh
Confidence 8754 4688887 778899999999887663
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=1.2e-16 Score=155.55 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=64.2
Q ss_pred CccHHHHHHHHHHHhc---CCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceeeecc---
Q 027392 71 EPSLQHKVMIEAVENH---MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLI--- 137 (224)
Q Consensus 71 ~~g~~qr~~la~al~~---~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~--- 137 (224)
|+||+||+.||++|+. +|+++||||||++||... +.++.++|.|||+++|+++++. .||+++. |-
T Consensus 830 SgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~ii~-Lgp~~ 907 (924)
T TIGR00630 830 SGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADYIID-LGPEG 907 (924)
T ss_pred CHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEE-ecCCc
Confidence 6899999999999997 599999999999999543 4456677999999999998775 6999974 41
Q ss_pred --CCeeEEEcCCHHH
Q 027392 138 --GGVDTVTLGDEEA 150 (224)
Q Consensus 138 --~~~~~v~~~~~~~ 150 (224)
.+|+++..++++.
T Consensus 908 G~~gG~iv~~G~~~~ 922 (924)
T TIGR00630 908 GDGGGTIVASGTPEE 922 (924)
T ss_pred cCCCCEEEEeCCHHH
Confidence 4678888877654
No 387
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.72 E-value=3e-17 Score=130.21 Aligned_cols=120 Identities=16% Similarity=0.152 Sum_probs=78.5
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchh-hHHhHcCCCCccHHHHHHHHHHHhc
Q 027392 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAI-GTARRMQVPEPSLQHKVMIEAVENH 86 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~qr~~la~al~~ 86 (224)
++.+++|+|||||||||+++.+.-.+... .+++....+ ...+ ...+.... ..... .-.|+||++++.+++++..
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~-~~~~~~~~~-~~~g--~~~~~~~~~~i~~~-~~lS~G~~~~~~la~~L~~ 94 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGA-QSATRRRSG-VKAG--CIVAAVSAELIFTR-LQLSGGEKELSALALILAL 94 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-chhhhccCc-ccCC--CcceeeEEEEehhe-eeccccHHHHHHHHHHHHh
Confidence 34599999999999999999987766543 222211100 0000 00010000 00001 1147899999999999986
Q ss_pred ----CCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhcccee
Q 027392 87 ----MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 87 ----~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
+|+++++|||++++|+.. +.++..++.++|++||+.++.. .+|+++
T Consensus 95 ~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~ 151 (162)
T cd03227 95 ASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE-LADKLI 151 (162)
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hhhhEE
Confidence 789999999999999643 3333334789999999998765 578875
No 388
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.72 E-value=6.5e-17 Score=130.36 Aligned_cols=123 Identities=13% Similarity=0.148 Sum_probs=78.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCccCCC----eEE-EEcCCCcccCC-C----Cc--ccchhhHHhHcCCCCccHHHHH
Q 027392 11 SILFVGRPGVGKTTVMREIARVLSDEFQK----RVV-IVDTSNEIGGD-G----DI--PHSAIGTARRMQVPEPSLQHKV 78 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~~~~~----~i~-~~~~~~~~~~~-~----~~--~~~~~~~~~~~~~~~~g~~qr~ 78 (224)
+.+|+||||||||+++.+|.-.+.-.... ... ........+.. . .+ ........+...+.|+||+||+
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~LS~Ge~~r~ 103 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGEKSLS 103 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCcccCCHHHHHHH
Confidence 89999999999999999987655321000 000 00000000000 0 00 0000001122234689999999
Q ss_pred HHHHHHh----cCCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 79 MIEAVEN----HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 79 ~la~al~----~~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
+++++++ .+|+++++|||++++|... +.++.+.|.++|++||+.+.. ..+|+++.
T Consensus 104 ~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~-~~adrvi~ 169 (178)
T cd03239 104 ALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMF-ENADKLIG 169 (178)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH-hhCCeEEE
Confidence 9999986 6899999999999999543 334455578999999998765 47888863
No 389
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.2e-17 Score=144.71 Aligned_cols=137 Identities=14% Similarity=0.252 Sum_probs=98.9
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC--c-----------ccCC-----------C-Ccccc
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN--E-----------IGGD-----------G-DIPHS 59 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~--~-----------~~~~-----------~-~~~~~ 59 (224)
.|++||++.|+|.|||||||+++.+.|+..|+ .|.|...+..- + ++.+ . .-++.
T Consensus 345 ~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq-sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~ 423 (546)
T COG4615 345 TIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ-SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQL 423 (546)
T ss_pred EEecCcEEEEECCCCCcHHHHHHHHhcccCCC-CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHH
Confidence 68999999999999999999999999999999 68877643210 0 0000 0 00111
Q ss_pred hhhHHhHc------CC---------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH--------HHHHHcCCEEE
Q 027392 60 AIGTARRM------QV---------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC--------RSIAERGVMLI 116 (224)
Q Consensus 60 ~~~~~~~~------~~---------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~--------~~~~~~g~tvi 116 (224)
.....+++ .+ .|.|||+|+++-.|++-+-|++++||..+..|+... -.++++|+||+
T Consensus 424 i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~ 503 (546)
T COG4615 424 IEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIF 503 (546)
T ss_pred HHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEE
Confidence 10111111 11 257999999999999999999999999999896543 34688999999
Q ss_pred EEEeCcchHHhhccceeeeccCCeeEEEc
Q 027392 117 GTAHGEWLENIIKNPILSDLIGGVDTVTL 145 (224)
Q Consensus 117 ~~tH~~~~~~~~~d~v~~~l~~~~~~v~~ 145 (224)
.+|||.. ....+||.+ .+..|+++..
T Consensus 504 aIsHDd~-YF~~ADrll--~~~~G~~~e~ 529 (546)
T COG4615 504 AISHDDH-YFIHADRLL--EMRNGQLSEL 529 (546)
T ss_pred EEecCch-hhhhHHHHH--HHhcCceeec
Confidence 9999987 445788987 4455666665
No 390
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.71 E-value=3e-17 Score=134.59 Aligned_cols=124 Identities=16% Similarity=0.116 Sum_probs=73.0
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCC-ccCCCeEEEEcCCCcccCCCCcccchh---hHHhHcCCCCccHHHHHHH
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLS-DEFQKRVVIVDTSNEIGGDGDIPHSAI---GTARRMQVPEPSLQHKVMI 80 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~-~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~qr~~l 80 (224)
.+.+|++++|+||||||||||+++|++..- .. .|... ......+++......... .....+.-. ..+.+++..
T Consensus 25 ~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~-~g~~~-~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~-~~e~~~l~~ 101 (202)
T cd03243 25 NLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQ-IGCFV-PAESASIPLVDRIFTRIGAEDSISDGRSTF-MAELLELKE 101 (202)
T ss_pred EEcCCeEEEEECCCCCccHHHHHHHHHHHHHHH-cCCCc-cccccccCCcCEEEEEecCcccccCCceeH-HHHHHHHHH
Confidence 467889999999999999999999994331 11 11100 000111111000000000 000001111 234445677
Q ss_pred HHHHhcCCCEEEEeCCCChHhHHH--------HHHHHHcCCEEEEEEeCcchHHhhccce
Q 027392 81 EAVENHMPEVIIVDEIGTEAEAHA--------CRSIAERGVMLIGTAHGEWLENIIKNPI 132 (224)
Q Consensus 81 a~al~~~p~llilDEp~~~lD~~~--------~~~~~~~g~tvi~~tH~~~~~~~~~d~v 132 (224)
+..++.+|+++|+|||++++|+.. ++.+.+.+.++|++||+.++.. .++++
T Consensus 102 i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~-~~~~~ 160 (202)
T cd03243 102 ILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELAD-LPEQV 160 (202)
T ss_pred HHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHH-HhhcC
Confidence 777788999999999999999532 2334556889999999987665 45443
No 391
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.71 E-value=1.6e-16 Score=154.95 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=67.9
Q ss_pred CccHHHHHHHHHHHhcCC---CEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceeeecc---
Q 027392 71 EPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLI--- 137 (224)
Q Consensus 71 ~~g~~qr~~la~al~~~p---~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~--- 137 (224)
|+||+||+.||++|+.+| +++||||||++||... +++++++|.|||+++|+++++. .||+++. |-
T Consensus 832 SgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ii~-Lgp~~ 909 (943)
T PRK00349 832 SGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWIID-LGPEG 909 (943)
T ss_pred CHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEE-ecCCc
Confidence 689999999999999999 9999999999999543 4455667999999999998775 7999974 42
Q ss_pred --CCeeEEEcCCHHHHHH
Q 027392 138 --GGVDTVTLGDEEARAR 153 (224)
Q Consensus 138 --~~~~~v~~~~~~~~~~ 153 (224)
.+|+++..++++.+..
T Consensus 910 G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 910 GDGGGEIVATGTPEEVAK 927 (943)
T ss_pred CCCCCEEEEeCCHHHHHh
Confidence 4688899998887653
No 392
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.71 E-value=1.5e-16 Score=161.65 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=67.8
Q ss_pred CccHHHHHHHHHHHh---cCCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceeeecc---
Q 027392 71 EPSLQHKVMIEAVEN---HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLI--- 137 (224)
Q Consensus 71 ~~g~~qr~~la~al~---~~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~--- 137 (224)
|+||+||++||++++ .+|+++||||||++||... +.++++.|.|||+++|++++. .+||+++. |.
T Consensus 811 SGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~-L~p~g 888 (1809)
T PRK00635 811 SGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLE-LGPEG 888 (1809)
T ss_pred CHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEE-EccCC
Confidence 699999999999997 6999999999999999543 445667799999999999988 79999974 52
Q ss_pred --CCeeEEEcCCHHHHHH
Q 027392 138 --GGVDTVTLGDEEARAR 153 (224)
Q Consensus 138 --~~~~~v~~~~~~~~~~ 153 (224)
.+|+++..++++.+..
T Consensus 889 g~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 889 GNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCCCEEEEeCCHHHHHh
Confidence 2578888999887653
No 393
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.70 E-value=8.7e-18 Score=164.40 Aligned_cols=147 Identities=18% Similarity=0.201 Sum_probs=99.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc-----------------CCCeEEEEcCCCcccCCCCcccchh----
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-----------------FQKRVVIVDTSNEIGGDGDIPHSAI---- 61 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~---- 61 (224)
.-+++||..++|+|++||||||||++|||...-- +.+.++|+.|...-.....+.+...
T Consensus 811 ~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~ 890 (1391)
T KOG0065|consen 811 SGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAA 890 (1391)
T ss_pred ceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHH
Confidence 4478999999999999999999999999975310 1123333333211101001100000
Q ss_pred -----------------hHHh----------HcCC----CCccHHHHHHHHHHHhcCC-CEEEEeCCCChHhHH------
Q 027392 62 -----------------GTAR----------RMQV----PEPSLQHKVMIEAVENHMP-EVIIVDEIGTEAEAH------ 103 (224)
Q Consensus 62 -----------------~~~~----------~~~~----~~~g~~qr~~la~al~~~p-~llilDEp~~~lD~~------ 103 (224)
...+ -++. .+..||+|+.||.-|+.+| -||+|||||+|||..
T Consensus 891 LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~ 970 (1391)
T KOG0065|consen 891 LRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVM 970 (1391)
T ss_pred HcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHH
Confidence 0001 1222 2467999999999999999 999999999999954
Q ss_pred -HHHHHHHcCCEEEEEEeCcch-HHhhccceeeeccCCeeEEEcCCHHH
Q 027392 104 -ACRSIAERGVMLIGTAHGEWL-ENIIKNPILSDLIGGVDTVTLGDEEA 150 (224)
Q Consensus 104 -~~~~~~~~g~tvi~~tH~~~~-~~~~~d~v~~~l~~~~~~v~~~~~~~ 150 (224)
.++++++.|.||+.|-|..+. ..+.-|+++. |..||+.|..|+...
T Consensus 971 ~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLL-LkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 971 RFLRKLADTGQTILCTIHQPSIDIFEAFDELLL-LKRGGQTVYFGPLGE 1018 (1391)
T ss_pred HHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHH-HhcCCeEEEecCccc
Confidence 356778899999999999641 2233466654 888999999877654
No 394
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.70 E-value=1.2e-16 Score=145.28 Aligned_cols=140 Identities=17% Similarity=0.149 Sum_probs=103.3
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc-----------ccCC-------CCcc-----cc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-----------IGGD-------GDIP-----HS 59 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~-----------~~~~-------~~~~-----~~ 59 (224)
+-.+.+|||+||.|--|||+|-|+++|.|..++. .|.+.+-+..-. +++. +.+. .+
T Consensus 279 Sf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~-~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~N 357 (500)
T COG1129 279 SFTVRAGEILGIAGLVGAGRTELARALFGARPAS-SGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAEN 357 (500)
T ss_pred eeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC-CceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHh
Confidence 4478999999999999999999999999977665 566654321100 0000 0000 00
Q ss_pred h-------------h----------hHHh-----------HcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhH---
Q 027392 60 A-------------I----------GTAR-----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA--- 102 (224)
Q Consensus 60 ~-------------~----------~~~~-----------~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~--- 102 (224)
. + ...+ ...-.|||.|||+.||+.|..+|++|||||||.|.|.
T Consensus 358 i~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK 437 (500)
T COG1129 358 ITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAK 437 (500)
T ss_pred eehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchH
Confidence 0 0 0011 1222479999999999999999999999999999993
Q ss_pred ----HHHHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEc
Q 027392 103 ----HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 145 (224)
Q Consensus 103 ----~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~ 145 (224)
..+++++++|++||++|-++.+...+|||++ +++.|+++..
T Consensus 438 ~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIl--Vm~~Gri~~e 482 (500)
T COG1129 438 AEIYRLIRELAAEGKAILMISSELPELLGLSDRIL--VMREGRIVGE 482 (500)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEE--EEECCEEEEE
Confidence 3567889999999999999999999999998 5667777764
No 395
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=3.3e-16 Score=140.98 Aligned_cols=136 Identities=13% Similarity=0.102 Sum_probs=96.2
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCC-----------------------CCcccchhh
Q 027392 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD-----------------------GDIPHSAIG 62 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~-----------------------~~~~~~~~~ 62 (224)
++.-+.++++|+||+||||+++++.+-+.|. .+.+.... +..+.+. +..++.+..
T Consensus 387 ~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~-rgi~~~~~-r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~ 464 (582)
T KOG0062|consen 387 RESDSRISRVGENGDGKSTLLKILKGDLTPT-RGIVGRHP-RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRR 464 (582)
T ss_pred cchhhhhheeccCchhHHHHHHHHhccCCcc-cceeeecc-cceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHH
Confidence 4455678999999999999999999988876 34333321 2111110 111111111
Q ss_pred HHhHc-----------CCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHH----HHHcCCEEEEEEeCcchHHh
Q 027392 63 TARRM-----------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEWLENI 127 (224)
Q Consensus 63 ~~~~~-----------~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~----~~~~g~tvi~~tH~~~~~~~ 127 (224)
-...+ .-.||||+-|+++|.+...+|.+|+|||||+.||.+.+.. ++..+..||++||+.++...
T Consensus 465 hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~ 544 (582)
T KOG0062|consen 465 HLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISS 544 (582)
T ss_pred HHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhh
Confidence 11222 3347999999999999999999999999999999876644 45667899999999999999
Q ss_pred hccceeeeccCCeeEEEc
Q 027392 128 IKNPILSDLIGGVDTVTL 145 (224)
Q Consensus 128 ~~d~v~~~l~~~~~~v~~ 145 (224)
+|+.++. . .+|++.-+
T Consensus 545 ~c~E~Wv-v-e~g~vt~i 560 (582)
T KOG0062|consen 545 LCKELWV-V-EDGKVTPI 560 (582)
T ss_pred cCceeEE-E-cCCcEEee
Confidence 9999974 4 44554444
No 396
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=99.68 E-value=5.4e-17 Score=133.46 Aligned_cols=135 Identities=46% Similarity=0.658 Sum_probs=112.4
Q ss_pred CcccceecCcE-EEEEcCCCCcHHHHHHHHHhcCCcc----CCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHH
Q 027392 1 MVYDLLHYGKS-ILFVGRPGVGKTTVMREIARVLSDE----FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQ 75 (224)
Q Consensus 1 ~~~~~i~~Ge~-~~l~G~nGsGKTTLl~~i~g~l~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 75 (224)
|+.+....|.. ++|+||||+|||||||-|+++++.. ...++.++++.++++. ........+...++++.++.-+
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag-~~~gvpq~~~g~R~dVld~cpk 206 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAG-CLNGVPQHGRGRRMDVLDPCPK 206 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhc-cccCCchhhhhhhhhhcccchH
Confidence 45667788877 9999999999999999999999765 3468889999888875 3444444555678888887778
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcchHHhhccceeeec
Q 027392 76 HKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 136 (224)
Q Consensus 76 qr~~la~al~~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l 136 (224)
...++.+...+.|+++|+||+.+.+|..++....+.|..+|.|.|.....+...++.+..+
T Consensus 207 ~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~~~GVkli~TaHG~~iedl~krp~lkdl 267 (308)
T COG3854 207 AEGMMMAIRSMSPEVIIVDEIGTEEDALAILTALHAGVKLITTAHGNGIEDLIKRPTLKDL 267 (308)
T ss_pred HHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHhcCcEEEEeeccccHHHhhcChhHHHH
Confidence 7888888889999999999999999999999999999999999999887776677775544
No 397
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.2e-16 Score=140.74 Aligned_cols=192 Identities=24% Similarity=0.354 Sum_probs=137.5
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCcc------HHHHHH
Q 027392 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPS------LQHKVM 79 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~qr~~ 79 (224)
+-+|..++|-|.||.||||||-.++-.+... +++.|+.. ++. .+|...+++++++.+.. ..-.-.
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~--~~vLYVsG-EES------~~QiklRA~RL~~~~~~l~l~aEt~~e~I 160 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKR--GKVLYVSG-EES------LQQIKLRADRLGLPTNNLYLLAETNLEDI 160 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhc--CcEEEEeC-CcC------HHHHHHHHHHhCCCccceEEehhcCHHHH
Confidence 4589999999999999999998888877654 58888853 332 45566667777764421 112234
Q ss_pred HHHHHhcCCCEEEEeCCCCh----Hh------------HHHH-HHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeE
Q 027392 80 IEAVENHMPEVIIVDEIGTE----AE------------AHAC-RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 142 (224)
Q Consensus 80 la~al~~~p~llilDEp~~~----lD------------~~~~-~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~ 142 (224)
++.+-..+|+++++|.+.+- ++ ...+ +..+.++.+++++.|...+-.....++++||.+-. +
T Consensus 161 ~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG~IAGPrvLEHmVDtV-l 239 (456)
T COG1066 161 IAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEGAIAGPRVLEHMVDTV-L 239 (456)
T ss_pred HHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEcccccccCchheeeeeeEE-E
Confidence 55555689999999999652 22 1122 33456799999999999877777788899885421 3
Q ss_pred EEcCCHHHHHHHhhHHHHhhcCCCceeEEEEEeccee---------EEeccch----hHHHHHhcCCCcee-eEEeecCC
Q 027392 143 VTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHY---------WVTHKTE----KSVDMLLRGKTPLV-EIRKRDDR 208 (224)
Q Consensus 143 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~----~~~~~~~~g~~~~~-e~~~~~~~ 208 (224)
.+.|+....+ +..+.++|||++.+..++|+|.++|. |++...+ .++.+.++|.||++ |+|++..+
T Consensus 240 yFEGd~~~~~-RiLR~vKNRFG~t~EiGvFeM~~~GL~eV~npS~lFL~er~~~~~GS~v~~~~EGtRpllvEvQALv~~ 318 (456)
T COG1066 240 YFEGDRHSRY-RILRSVKNRFGATNELGVFEMTENGLREVSNPSALFLSERGEQTPGSAVVVVMEGTRPLLVEIQALVSP 318 (456)
T ss_pred EEeccCCCce-eeeehhcccCCcccceeEEEEecCCeeEecCcHHhHhhcCCCCCCCcEEEEEEecccceEEEeeecccc
Confidence 3345555544 67899999999999999999999984 4443322 35677899999995 99985544
No 398
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.1e-16 Score=142.14 Aligned_cols=119 Identities=19% Similarity=0.237 Sum_probs=83.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcCCccCC-------CeEEEEcCCC--ccc----------CCCCcccchh-hHHhHcC
Q 027392 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSN--EIG----------GDGDIPHSAI-GTARRMQ 68 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~-------~~i~~~~~~~--~~~----------~~~~~~~~~~-~~~~~~~ 68 (224)
...++|+||||.||||||+.|.|-+.|+.+ -+|.++++.. .+. ....+|.+-. ...-.++
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fG 692 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFG 692 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhh
Confidence 467999999999999999999999998721 1344554421 110 0112222111 1111222
Q ss_pred C-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHHH----HHcCCEEEEEEeCcchHHh
Q 027392 69 V-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI----AERGVMLIGTAHGEWLENI 127 (224)
Q Consensus 69 ~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~~----~~~g~tvi~~tH~~~~~~~ 127 (224)
+ .||||+.|+++|-.-+..|++|||||||++||++.+..+ .+....||++||+..++-.
T Consensus 693 L~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~e 766 (807)
T KOG0066|consen 693 LASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVE 766 (807)
T ss_pred hhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeee
Confidence 2 369999999999999999999999999999998876654 3457789999999775543
No 399
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.67 E-value=2.1e-16 Score=129.60 Aligned_cols=119 Identities=14% Similarity=0.105 Sum_probs=68.9
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc-CCCeEE---EEcCCCcccCCCCcccchhhHHhHcCCCC-ccHHHHHH
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDE-FQKRVV---IVDTSNEIGGDGDIPHSAIGTARRMQVPE-PSLQHKVM 79 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~-~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~qr~~ 79 (224)
.+..|++++|+||||||||||+|+|++...-. .+..+- +..+...+.......++.. .+... ..+.+++.
T Consensus 21 ~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~-----~~~s~~~~e~~~~~ 95 (199)
T cd03283 21 DMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLR-----DGISYFYAELRRLK 95 (199)
T ss_pred EEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccc-----cccChHHHHHHHHH
Confidence 46778999999999999999999999866311 111110 0001001100000011100 01100 11223333
Q ss_pred HHHHHhc--CCCEEEEeCCCChHhHHH--------HHHHHHcCCEEEEEEeCcchHHhh
Q 027392 80 IEAVENH--MPEVIIVDEIGTEAEAHA--------CRSIAERGVMLIGTAHGEWLENII 128 (224)
Q Consensus 80 la~al~~--~p~llilDEp~~~lD~~~--------~~~~~~~g~tvi~~tH~~~~~~~~ 128 (224)
-+...+. +|+++|+|||++++|... ++.+.+.+.++|++||+.+++..+
T Consensus 96 ~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 96 EIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 3333334 899999999999999432 334556689999999998877654
No 400
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.66 E-value=6.1e-16 Score=140.87 Aligned_cols=136 Identities=20% Similarity=0.284 Sum_probs=97.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc--------CC--CeEEEEcCCCcccCCCCcccchh-----------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE--------FQ--KRVVIVDTSNEIGGDGDIPHSAI----------- 61 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~--------~~--~~i~~~~~~~~~~~~~~~~~~~~----------- 61 (224)
+--|+.|+.++|.||||||||.|+|.++|+.+.. .+ +.+.|++|++.... +...+|.+
T Consensus 455 s~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~-GTLRdQvIYP~~~~~~~~~ 533 (659)
T KOG0060|consen 455 SLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTL-GTLRDQVIYPLKAEDMDSK 533 (659)
T ss_pred eeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccc-cchhheeeccCcccccccc
Confidence 4468899999999999999999999999999743 11 23666666543221 11111100
Q ss_pred --------hH---------H------------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH----HHHH
Q 027392 62 --------GT---------A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----CRSI 108 (224)
Q Consensus 62 --------~~---------~------------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~----~~~~ 108 (224)
.. . +-..+.|+|++||+++||.+.++|++.||||-|++++.+. -+.+
T Consensus 534 ~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~ 613 (659)
T KOG0060|consen 534 SASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKC 613 (659)
T ss_pred CCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHH
Confidence 00 0 1122347999999999999999999999999999987442 2455
Q ss_pred HHcCCEEEEEEeCcchHHhhccceeeeccCCee
Q 027392 109 AERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 141 (224)
Q Consensus 109 ~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~ 141 (224)
++.|+|.|.++|..+ ...+.|.++. +.++|.
T Consensus 614 r~~giT~iSVgHRkS-L~kfHd~~L~-~~g~g~ 644 (659)
T KOG0060|consen 614 REMGITFISVGHRKS-LWKFHDYVLR-MDGRGS 644 (659)
T ss_pred HHcCCeEEEeccHHH-HHhhhhEEEE-ecCCCc
Confidence 678999999999987 4457777765 666553
No 401
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.63 E-value=1.5e-15 Score=129.71 Aligned_cols=114 Identities=32% Similarity=0.528 Sum_probs=76.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCC-------CcccC-CCCcccchhhHHhHcCCCCccHHHHHHHH
Q 027392 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-------NEIGG-DGDIPHSAIGTARRMQVPEPSLQHKVMIE 81 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~g~~qr~~la 81 (224)
..++|+||||||||||+++|+|++++. .|.+.+.+.+ .++.. ...+++...+ .+..+.++-.+......
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~--~r~~v~~~~~k~~~~~~ 188 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVG--IRTDVLDGCPKAEGMMM 188 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEEeecchhHHHHHHHhccccccccc--ccccccccchHHHHHHH
Confidence 678999999999999999999999987 5666543211 11110 0112222111 22333333344445566
Q ss_pred HHHhcCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcchHH
Q 027392 82 AVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLEN 126 (224)
Q Consensus 82 ~al~~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~~~ 126 (224)
.+++++|+++++|||++..+...+.+..+.|.++|+|+|+....+
T Consensus 189 ~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 189 LIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDVED 233 (270)
T ss_pred HHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHHHH
Confidence 666689999999999998777766555567999999999976543
No 402
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.62 E-value=1.1e-15 Score=126.46 Aligned_cols=63 Identities=10% Similarity=-0.065 Sum_probs=47.8
Q ss_pred CCccHHHHHHHHHHH----hcCCCEEEEeCCCChHhHHH-------HHHHHHc-C-CEEEEEEeCcchHHhhccce
Q 027392 70 PEPSLQHKVMIEAVE----NHMPEVIIVDEIGTEAEAHA-------CRSIAER-G-VMLIGTAHGEWLENIIKNPI 132 (224)
Q Consensus 70 ~~~g~~qr~~la~al----~~~p~llilDEp~~~lD~~~-------~~~~~~~-g-~tvi~~tH~~~~~~~~~d~v 132 (224)
.|+||+|++.++.++ +.+|+++|+|||++++|+.. +.+++++ | .++|++||++......++++
T Consensus 127 LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~ 202 (213)
T cd03277 127 QSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKM 202 (213)
T ss_pred ccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCce
Confidence 468999998776554 47999999999999999543 3344444 5 47999999976666777765
No 403
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.61 E-value=7.5e-16 Score=125.51 Aligned_cols=152 Identities=21% Similarity=0.221 Sum_probs=98.6
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccC--------------------------CCeEEEEcCCCcccCC--
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--------------------------QKRVVIVDTSNEIGGD-- 53 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~--------------------------~~~i~~~~~~~~~~~~-- 53 (224)
++-++..||+-+|+|.+|||||-..|+|+|..+.+- +..|.++.|.+..-.+
T Consensus 26 v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS 105 (330)
T COG4170 26 VSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPS 105 (330)
T ss_pred eeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChH
Confidence 345788999999999999999999999999987430 0111111111100000
Q ss_pred --------CCccc----------------chhhHHhHcCCCC-------------ccHHHHHHHHHHHhcCCCEEEEeCC
Q 027392 54 --------GDIPH----------------SAIGTARRMQVPE-------------PSLQHKVMIEAVENHMPEVIIVDEI 96 (224)
Q Consensus 54 --------~~~~~----------------~~~~~~~~~~~~~-------------~g~~qr~~la~al~~~p~llilDEp 96 (224)
..+|. ..+....++++.+ .|+-|+++||.|++..|++||.|||
T Consensus 106 ~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEP 185 (330)
T COG4170 106 ERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEP 185 (330)
T ss_pred HHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCC
Confidence 00000 0011123344432 5788999999999999999999999
Q ss_pred CChHhHH-------HHHHHH-HcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCHHHHHHHh
Q 027392 97 GTEAEAH-------ACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 155 (224)
Q Consensus 97 ~~~lD~~-------~~~~~~-~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~~~~ 155 (224)
|+.++.- .+..+. .++.||++++||.....++||++-. +.-|+.+..+..+.+...+
T Consensus 186 TN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~V--lYCGQ~~ESa~~e~l~~~P 250 (330)
T COG4170 186 TNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINV--LYCGQTVESAPSEELVTMP 250 (330)
T ss_pred CcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEE--EEecccccccchhHHhcCC
Confidence 9998832 233343 4578999999999989999999843 2224456665555555433
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.61 E-value=1.9e-15 Score=125.97 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=76.7
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-cccCCCCcccchhhHH-hHcCCCCccHHHHHHHHHH
Q 027392 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIGGDGDIPHSAIGTA-RRMQVPEPSLQHKVMIEAV 83 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~g~~qr~~la~a 83 (224)
..++++++|.||||+||||++++++-..--.--| .+++... .+.....+.. .++.. ....-.|.+++++..++++
T Consensus 27 ~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g--~~vpa~~~~~~~~~~il~-~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 27 RGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIG--CFVPCDSADIPIVDCILA-RVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred ecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhC--CCcCcccEEEeccceeEe-eeccccchhcCcChHHHHHHHHHHH
Confidence 3578999999999999999999976321000000 0111110 0000000000 00000 0122346788999999999
Q ss_pred H--hcCCCEEEEeCC---CChHhHHH-----HHHHHH-cCCEEEEEEeCcchHHhhcccee
Q 027392 84 E--NHMPEVIIVDEI---GTEAEAHA-----CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 84 l--~~~p~llilDEp---~~~lD~~~-----~~~~~~-~g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
+ +.+|+++||||| |+++|... ++.+.+ .+.++|++||. .+...+|+++.
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~-~el~~~~~~~~ 163 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHF-HELTALADEVP 163 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEech-HHHHHHhhcCC
Confidence 8 789999999999 88899543 244554 47899999997 45677888874
No 405
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.60 E-value=2.4e-15 Score=135.84 Aligned_cols=132 Identities=15% Similarity=0.241 Sum_probs=92.9
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc-------CCCeEEEEcCCCcccCCCCcccchhh---------------
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDE-------FQKRVVIVDTSNEIGGDGDIPHSAIG--------------- 62 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~--------------- 62 (224)
+|++|..++|+||||||||.|+|+|+|+.+-. ...++.|++|.+... .+.+.++.+.
T Consensus 504 ~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~ 582 (728)
T KOG0064|consen 504 QIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQ 582 (728)
T ss_pred EecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCHH
Confidence 68999999999999999999999999999742 023466777765433 2222111110
Q ss_pred ----H---------H----------hHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHh--HH--HHHHHHHcCCEE
Q 027392 63 ----T---------A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE--AH--ACRSIAERGVML 115 (224)
Q Consensus 63 ----~---------~----------~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD--~~--~~~~~~~~g~tv 115 (224)
. . .--.+.+||++||+.+||.+-++|++.+|||-|+... .+ ..+.++..|.++
T Consensus 583 dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~l 662 (728)
T KOG0064|consen 583 DLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISL 662 (728)
T ss_pred HHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceE
Confidence 0 0 1112347999999999999999999999999999754 32 345566779999
Q ss_pred EEEEeCcchHHhhccceeeeccCC
Q 027392 116 IGTAHGEWLENIIKNPILSDLIGG 139 (224)
Q Consensus 116 i~~tH~~~~~~~~~d~v~~~l~~~ 139 (224)
+.+||....- .+....+. +++.
T Consensus 663 lsithrpslw-k~h~~ll~-~dg~ 684 (728)
T KOG0064|consen 663 LSITHRPSLW-KYHTHLLE-FDGE 684 (728)
T ss_pred EEeecCccHH-HHHHHHHh-ccCC
Confidence 9999998743 35555544 4443
No 406
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.60 E-value=5.1e-15 Score=120.17 Aligned_cols=137 Identities=20% Similarity=0.237 Sum_probs=91.2
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC----------cc-----------cCCCCcccc----
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----------EI-----------GGDGDIPHS---- 59 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~----------~~-----------~~~~~~~~~---- 59 (224)
-++.|...+++|.||||||||||+|+|---.. ++.|.+.+.+. .+ ...+.+|-+
T Consensus 36 dlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~-~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~s 114 (291)
T KOG2355|consen 36 DLPAGSRCLLVGANGAGKTTLLKILSGKHMVG-GGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDIS 114 (291)
T ss_pred ccCCCceEEEEecCCCchhhhHHHhcCccccc-CCeEEEcCcCccccccccccCceeEeccccccccccccccccccccc
Confidence 57899999999999999999999999975432 23333221110 00 000111111
Q ss_pred ----hhh-------H----HhHcCC--------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH----HH----HH
Q 027392 60 ----AIG-------T----ARRMQV--------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----CR----SI 108 (224)
Q Consensus 60 ----~~~-------~----~~~~~~--------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~----~~----~~ 108 (224)
+++ + .+-+.+ -|.||++|++|+..|++.-++|+|||.|..||.-+ ++ +.
T Consensus 115 ae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEc 194 (291)
T KOG2355|consen 115 AEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEEC 194 (291)
T ss_pred HHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHH
Confidence 000 0 011111 26899999999999999999999999999999533 22 22
Q ss_pred HHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEE
Q 027392 109 AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 144 (224)
Q Consensus 109 ~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~ 144 (224)
-.+|.||++.||..+=.+.+...++ .+.+|+++.
T Consensus 195 e~RgatIVYATHIFDGLe~Wpthl~--yi~~Gkl~~ 228 (291)
T KOG2355|consen 195 EQRGATIVYATHIFDGLETWPTHLV--YIKSGKLVD 228 (291)
T ss_pred hhcCcEEEEEeeeccchhhcchhEE--EecCCeeee
Confidence 3468999999999877778888885 445566665
No 407
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=4.8e-16 Score=138.03 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=55.9
Q ss_pred CccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHH----HHHHHcCCEEEEEEeCcchHHhhcccee
Q 027392 71 EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC----RSIAERGVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 71 ~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~----~~~~~~g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
|||++.|+.|||||...|.+|.|||||+.||.+++ ..+.-..+|++++||+..+.+.+|..|+
T Consensus 414 SGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdII 480 (807)
T KOG0066|consen 414 SGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDII 480 (807)
T ss_pred CCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHh
Confidence 69999999999999999999999999999997653 3444557899999999999999999886
No 408
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.59 E-value=7.2e-15 Score=120.91 Aligned_cols=122 Identities=11% Similarity=0.103 Sum_probs=73.9
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC-CCcccCCCCcccchhh----HHhHcCCCCccHHHHHH
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-SNEIGGDGDIPHSAIG----TARRMQVPEPSLQHKVM 79 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~qr~~ 79 (224)
.+++|++++|+||||+||||++|+++++.--..-| .+++. ...+.....+.. .+. ..+...-.+.+++| +.
T Consensus 25 ~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G--~~vpa~~~~l~~~d~I~~-~~~~~d~~~~~~S~fs~e~~~-~~ 100 (204)
T cd03282 25 TRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIG--CFVPAEYATLPIFNRLLS-RLSNDDSMERNLSTFASEMSE-TA 100 (204)
T ss_pred eeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcC--CCcchhhcCccChhheeE-ecCCccccchhhhHHHHHHHH-HH
Confidence 45678999999999999999999998664211000 00000 001100000000 000 00111112356665 45
Q ss_pred HHHHHhcCCCEEEEeCCCChHhHH--------HHHHHHHcCCEEEEEEeCcchHHhhcc
Q 027392 80 IEAVENHMPEVIIVDEIGTEAEAH--------ACRSIAERGVMLIGTAHGEWLENIIKN 130 (224)
Q Consensus 80 la~al~~~p~llilDEp~~~lD~~--------~~~~~~~~g~tvi~~tH~~~~~~~~~d 130 (224)
.+..++.+|+++++|||++++|+. .++.+.+.+.++|++||+.++.+.+++
T Consensus 101 ~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 101 YILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhc
Confidence 666677899999999998888642 345666779999999999988876654
No 409
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.57 E-value=2.1e-14 Score=118.91 Aligned_cols=112 Identities=15% Similarity=0.100 Sum_probs=69.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHh--cCCcc------CCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHH
Q 027392 10 KSILFVGRPGVGKTTVMREIAR--VLSDE------FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIE 81 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g--~l~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la 81 (224)
.+++|+||||+|||||||.++. ++... ...++.++++-.... ....... ....- -..+.+++.++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l---~~~~si~---~~~S~-f~~el~~l~~~ 102 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRM---SSRESVS---SGQSA-FMIDLYQVSKA 102 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeee---CCccChh---hccch-HHHHHHHHHHH
Confidence 6899999999999999999983 33211 112222322210000 0000000 00000 02356789999
Q ss_pred HHHhcCCCEEEEeCCCChHhHH--------HHHHHHHc---CCEEEEEEeCcchHHhh
Q 027392 82 AVENHMPEVIIVDEIGTEAEAH--------ACRSIAER---GVMLIGTAHGEWLENII 128 (224)
Q Consensus 82 ~al~~~p~llilDEp~~~lD~~--------~~~~~~~~---g~tvi~~tH~~~~~~~~ 128 (224)
++++.+|.++|+|||++++|.. .++++.+. +.++|++||+.++...+
T Consensus 103 l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 103 LRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 9999999999999999999842 24455544 34899999998877654
No 410
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.53 E-value=3.3e-14 Score=115.17 Aligned_cols=111 Identities=14% Similarity=0.207 Sum_probs=62.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh-cCCccC-------CCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHH
Q 027392 11 SILFVGRPGVGKTTVMREIAR-VLSDEF-------QKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEA 82 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g-~l~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~ 82 (224)
+++|+||||+||||++|.++- .+-... ...+.++++--... ...+.. .....-.+++++| +++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~---~~~d~~---~~~~s~fs~~~~~---l~~ 71 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRI---GASDSL---AQGLSTFMVEMKE---TAN 71 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEe---CCCCch---hccccHHHHHHHH---HHH
Confidence 368999999999999999982 221111 11111111000000 000000 0011111234433 455
Q ss_pred HHhc--CCCEEEEeCCCChHhHHH--------HHHHHHc-CCEEEEEEeCcchHHhhccc
Q 027392 83 VENH--MPEVIIVDEIGTEAEAHA--------CRSIAER-GVMLIGTAHGEWLENIIKNP 131 (224)
Q Consensus 83 al~~--~p~llilDEp~~~lD~~~--------~~~~~~~-g~tvi~~tH~~~~~~~~~d~ 131 (224)
++.. +|+++|+|||++++|+.. ++.+.++ +.++|++||+.+ ...+++.
T Consensus 72 ~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~~~~~~ 130 (185)
T smart00534 72 ILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LTKLADE 130 (185)
T ss_pred HHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHHHhhc
Confidence 5555 999999999999999541 2344553 789999999986 4455553
No 411
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.53 E-value=4.9e-14 Score=116.93 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=65.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc-CCCcccCCCCcccchhhHHhHcCCCCccH----HHHHHHHHHH
Q 027392 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-TSNEIGGDGDIPHSAIGTARRMQVPEPSL----QHKVMIEAVE 84 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~qr~~la~al 84 (224)
++++|+|||||||||++|.+++..-....+ .+++ ....+.+...+. ......+.+ +.|+ .....++.++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g--~~vp~~~~~i~~~~~i~-~~~~~~~~l---s~g~s~f~~e~~~l~~~l 104 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIG--SFVPASKAEIGVVDRIF-TRIGASDDL---AGGRSTFMVEMVETANIL 104 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccC--CeeccccceecceeeEe-ccCCchhhh---ccCcchHHHHHHHHHHHH
Confidence 799999999999999999998643211001 0111 011111100000 000000111 1222 2223455444
Q ss_pred --hcCCCEEEEeCC---CChHhHHH-----HHHHHHc-CCEEEEEEeCcchHHhhccce
Q 027392 85 --NHMPEVIIVDEI---GTEAEAHA-----CRSIAER-GVMLIGTAHGEWLENIIKNPI 132 (224)
Q Consensus 85 --~~~p~llilDEp---~~~lD~~~-----~~~~~~~-g~tvi~~tH~~~~~~~~~d~v 132 (224)
+.+|+++||||| |+++|... ++.+.+. +.++|++||+.++ ..+++++
T Consensus 105 ~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l-~~l~~~~ 162 (216)
T cd03284 105 NNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHEL-TELEGKL 162 (216)
T ss_pred HhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHH-HHHhhcC
Confidence 469999999999 88888533 3455666 8899999999754 4466654
No 412
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.49 E-value=3.8e-13 Score=137.31 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=67.7
Q ss_pred CccHHHHHHHHHHHhcC---CCEEEEeCCCChHhHH-------HHHHHHHcCCEEEEEEeCcchHHhhccceeeec----
Q 027392 71 EPSLQHKVMIEAVENHM---PEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDL---- 136 (224)
Q Consensus 71 ~~g~~qr~~la~al~~~---p~llilDEp~~~lD~~-------~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l---- 136 (224)
|||+.||+-||..|..+ +.++||||||+||++. .++++.+.|.|||++.|+++.+.. ||.++. |
T Consensus 1701 SGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~-aD~iid-lgp~g 1778 (1809)
T PRK00635 1701 SLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQ-ADYLIE-MGPGS 1778 (1809)
T ss_pred CchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh-CCEEEE-cCCCc
Confidence 69999999999999865 7999999999999853 345678899999999999997764 999875 3
Q ss_pred -cCCeeEEEcCCHHHHHH
Q 027392 137 -IGGVDTVTLGDEEARAR 153 (224)
Q Consensus 137 -~~~~~~v~~~~~~~~~~ 153 (224)
..||++|+.|+|+.+..
T Consensus 1779 G~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1779 GKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred ccCCCEEEEEeCHHHHhh
Confidence 23678999999998763
No 413
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.47 E-value=3.3e-13 Score=117.68 Aligned_cols=125 Identities=18% Similarity=0.212 Sum_probs=80.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHH
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 83 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~a 83 (224)
.+++.|+.++|.||+|||||||+++|++.++++ .++..++...++.... +....................-.++.+
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~--~~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD--ERIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc--ccEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCHHHHHHHH
Confidence 457789999999999999999999999999875 4455554444432211 110000000000011122334467888
Q ss_pred HhcCCCEEEEeCCCChHhHHHHHHHHHcCC-EEEEEEeCcchHHhhccceee
Q 027392 84 ENHMPEVIIVDEIGTEAEAHACRSIAERGV-MLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 84 l~~~p~llilDEp~~~lD~~~~~~~~~~g~-tvi~~tH~~~~~~~~~d~v~~ 134 (224)
|..+|+++++|||.+......++.+. .|. +++.|.|..+ +....+|+..
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l~a~~-~g~~~~i~T~Ha~~-~~~~~~Rl~~ 264 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFIRAVN-TGHPGSITTLHAGS-PEEAFEQLAL 264 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHHHHHh-cCCCeEEEEEeCCC-HHHHHHHHHH
Confidence 99999999999999854444444444 565 5699999998 5555777753
No 414
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=2.1e-13 Score=117.03 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=50.1
Q ss_pred CccHHHHHHHHHHHhc----CCCEEEEeCCCChHhHHHHHHH----H--HcCCEEEEEEeCcchHHhhccceee
Q 027392 71 EPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAHACRSI----A--ERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 71 ~~g~~qr~~la~al~~----~p~llilDEp~~~lD~~~~~~~----~--~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
|+||+||+++|++++. +|+++++|||+++||......+ . ..+.++|++||+.... .+||+++.
T Consensus 172 S~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~ 244 (276)
T cd03241 172 SGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFL 244 (276)
T ss_pred ChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEE
Confidence 6899999999986554 9999999999999996643321 1 2368999999998854 68888864
No 415
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.46 E-value=1.1e-13 Score=123.44 Aligned_cols=194 Identities=22% Similarity=0.333 Sum_probs=117.8
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCc------cHHHHH
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP------SLQHKV 78 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~qr~ 78 (224)
=+.+|+++.|.|+||+|||||+..++...... ++++.|+...+. +.+...+++++++... ...-..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EEs-------~~qi~~Ra~rlg~~~~~l~l~~e~~le~ 149 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEES-------PEQIKLRADRLGISTENLYLLAETNLED 149 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCcC-------HHHHHHHHHHcCCCcccEEEEccCcHHH
Confidence 47789999999999999999999999877655 578887753221 1222222334433210 000111
Q ss_pred HHHHHHhcCCCEEEEeCCCCh----Hh--------H----HHHHH-HHHcCCEEEEEEeCcchHHhhccceeeeccCCee
Q 027392 79 MIEAVENHMPEVIIVDEIGTE----AE--------A----HACRS-IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 141 (224)
Q Consensus 79 ~la~al~~~p~llilDEp~~~----lD--------~----~~~~~-~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~ 141 (224)
.+..+...+|+++++|+.++- +| . ..+.+ +++.+.++|++.|..........+.+.|+.+..
T Consensus 150 I~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~V- 228 (372)
T cd01121 150 ILASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTV- 228 (372)
T ss_pred HHHHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEE-
Confidence 233334469999999998542 11 1 11223 356789999999975532211223444443321
Q ss_pred EEEcCCHHHHHHHhhHHHHhhcCCCceeEEEEEecceeE---------Eecc----chhHHHHHhcCCCcee-eEEeecC
Q 027392 142 TVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYW---------VTHK----TEKSVDMLLRGKTPLV-EIRKRDD 207 (224)
Q Consensus 142 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~----~~~~~~~~~~g~~~~~-e~~~~~~ 207 (224)
+.+.++... ..+..+.+++||++......|+|.+.|.. +..+ .+.++.+.++|.||++ |+|++..
T Consensus 229 i~le~~~~~-~~R~Lri~KnR~g~~~ei~~F~i~~~Gl~~v~~ps~~fl~~~~~~~~g~~~~~~~eg~r~~~~e~qal~~ 307 (372)
T cd01121 229 LYFEGDRHS-EYRILRSVKNRFGSTNELGVFEMRENGLREVSNPSELFLSEREEDVPGSAVTVVMEGSRPLLVEVQALVS 307 (372)
T ss_pred EEEEcCCCC-cEEEEEEEeCCCCCCCCEEEEEECCCCeEEccChhhheecCCCCCCCccEEEeeccCCcceeeEeehhcc
Confidence 122222221 22455677889998888899999998843 3321 2235678899999995 9999665
Q ss_pred C
Q 027392 208 R 208 (224)
Q Consensus 208 ~ 208 (224)
+
T Consensus 308 ~ 308 (372)
T cd01121 308 P 308 (372)
T ss_pred C
Confidence 4
No 416
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.46 E-value=6.6e-13 Score=108.72 Aligned_cols=117 Identities=20% Similarity=0.316 Sum_probs=78.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhcCCCE
Q 027392 11 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 90 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~~p~l 90 (224)
+++|.||+||||||+++.+++.+.+..++.+..+....+....... .... ...++.. .....-++++++..+|++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~--~~i~-q~~vg~~--~~~~~~~i~~aLr~~pd~ 77 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKR--SLIN-QREVGLD--TLSFENALKAALRQDPDV 77 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCcc--ceee-ecccCCC--ccCHHHHHHHHhcCCcCE
Confidence 7899999999999999999998875435677766544332111000 0000 0011111 111233688899999999
Q ss_pred EEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcchHHhhcccee
Q 027392 91 IIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 91 lilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
+++|||........+.++...|..++.|+|..+.. ...+|++
T Consensus 78 ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~~~-~~~~Rl~ 119 (198)
T cd01131 78 ILVGEMRDLETIRLALTAAETGHLVMSTLHTNSAA-KTIDRII 119 (198)
T ss_pred EEEcCCCCHHHHHHHHHHHHcCCEEEEEecCCcHH-HHHhHHH
Confidence 99999987655555556677899999999998855 4567774
No 417
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.43 E-value=1.3e-12 Score=117.63 Aligned_cols=144 Identities=13% Similarity=0.143 Sum_probs=106.4
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC--ccc-------CCCCcccch------------
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN--EIG-------GDGDIPHSA------------ 60 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~--~~~-------~~~~~~~~~------------ 60 (224)
|+-.|.+|||++|.|-.|.|-+.|+.+|+|+.++. .|+|.+.+.+- ... ..+.+|+..
T Consensus 277 vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~-~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~ 355 (501)
T COG3845 277 VSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA-SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLA 355 (501)
T ss_pred eeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC-CceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHH
Confidence 45578999999999999999999999999999776 48877654321 000 011111110
Q ss_pred ----------------------------hhHHhHcCC-----------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHh
Q 027392 61 ----------------------------IGTARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 101 (224)
Q Consensus 61 ----------------------------~~~~~~~~~-----------~~~g~~qr~~la~al~~~p~llilDEp~~~lD 101 (224)
....+.+++ .|||++||+.+||-+..+|++||+.+||.|||
T Consensus 356 eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLD 435 (501)
T COG3845 356 ENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLD 435 (501)
T ss_pred HHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCcccc
Confidence 000122222 36999999999999999999999999999999
Q ss_pred HHH-------HHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEcCCH
Q 027392 102 AHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 148 (224)
Q Consensus 102 ~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~ 148 (224)
..+ +.++++.|+.|+++|-++++...+||++. .+.+|+++-..++
T Consensus 436 vgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIa--Vi~~Gri~~~~~~ 487 (501)
T COG3845 436 VGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIA--VIYEGRIVGIVPP 487 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheee--eeeCCceeccccc
Confidence 543 34567789999999999999999999996 5566766655443
No 418
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.41 E-value=4e-12 Score=120.04 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=67.7
Q ss_pred CccHHHHHHHHHHHhcCC---CEEEEeCCCChHhH-------HHHHHHHHcCCEEEEEEeCcchHHhhccceeeec----
Q 027392 71 EPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL---- 136 (224)
Q Consensus 71 ~~g~~qr~~la~al~~~p---~llilDEp~~~lD~-------~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l---- 136 (224)
|||+.||+-||.-|..+. .+.||||||+||-. +.+..+.+.|.|||++.|+++.+ ..||.++. |
T Consensus 824 SGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVI-k~AD~IID-LGPeG 901 (935)
T COG0178 824 SGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVI-KTADWIID-LGPEG 901 (935)
T ss_pred cchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceE-eecCEEEE-cCCCC
Confidence 699999999999998876 99999999999853 34566788999999999999855 47888864 3
Q ss_pred -cCCeeEEEcCCHHHHHH
Q 027392 137 -IGGVDTVTLGDEEARAR 153 (224)
Q Consensus 137 -~~~~~~v~~~~~~~~~~ 153 (224)
.+||++|+.|+|+++..
T Consensus 902 G~~GG~iva~GTPeeva~ 919 (935)
T COG0178 902 GDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCceEEEecCHHHHHh
Confidence 34678999999998774
No 419
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.39 E-value=5.3e-13 Score=128.70 Aligned_cols=116 Identities=14% Similarity=0.181 Sum_probs=72.1
Q ss_pred eecC-cEEEEEcCCCCcHHHHHHHHHhc-CCccCCCeEEEEcCC--CcccCCCCccc---chhhHHhHcCCCCccHHHHH
Q 027392 6 LHYG-KSILFVGRPGVGKTTVMREIARV-LSDEFQKRVVIVDTS--NEIGGDGDIPH---SAIGTARRMQVPEPSLQHKV 78 (224)
Q Consensus 6 i~~G-e~~~l~G~nGsGKTTLl~~i~g~-l~~~~~~~i~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~g~~qr~ 78 (224)
+.++ ++++|+||||+|||||||.+++. +.+.. |- +++.. ..+++...... ..-.....+.-.++++++..
T Consensus 318 l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~-G~--~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~ 394 (771)
T TIGR01069 318 LKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQS-GI--PIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNIS 394 (771)
T ss_pred eCCCceEEEEECCCCCCchHHHHHHHHHHHHHHh-CC--CccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHH
Confidence 3445 89999999999999999999998 33331 21 11111 11111000000 00001122233357888877
Q ss_pred HHHHHHhcCCCEEEEeCCCChHhHH--------HHHHHHHcCCEEEEEEeCcchH
Q 027392 79 MIEAVENHMPEVIIVDEIGTEAEAH--------ACRSIAERGVMLIGTAHGEWLE 125 (224)
Q Consensus 79 ~la~al~~~p~llilDEp~~~lD~~--------~~~~~~~~g~tvi~~tH~~~~~ 125 (224)
.+...+ .+|.++|+|||++|+|+. .+..+.+.|.++|++||+.++.
T Consensus 395 ~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 395 AILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred HHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 666554 689999999999999943 2345566789999999997654
No 420
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.38 E-value=2e-12 Score=107.74 Aligned_cols=120 Identities=15% Similarity=0.143 Sum_probs=67.1
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHh-cCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcC-CCC--ccHHHHHHH
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIAR-VLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQ-VPE--PSLQHKVMI 80 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g-~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~g~~qr~~l 80 (224)
.+.+|++++|+||||+||||+++++++ .+.+. .|....- ....+.+...+.. .++..+.+. -.| ..+-+++.-
T Consensus 27 ~~~~g~~~~itG~N~~GKStll~~i~~~~~la~-~G~~v~a-~~~~~~~~~~i~~-~~~~~d~~~~~~StF~~e~~~~~~ 103 (222)
T cd03287 27 SAEGGYCQIITGPNMGGKSSYIRQVALITIMAQ-IGSFVPA-SSATLSIFDSVLT-RMGASDSIQHGMSTFMVELSETSH 103 (222)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHHHHHHHHh-CCCEEEc-CceEEeccceEEE-EecCccccccccchHHHHHHHHHH
Confidence 457899999999999999999999999 34443 2322111 1111111000000 000000000 001 122333333
Q ss_pred HHHHhcCCCEEEEeCCCChHh---H-----HHHHHHHHc-CCEEEEEEeCcchHHh
Q 027392 81 EAVENHMPEVIIVDEIGTEAE---A-----HACRSIAER-GVMLIGTAHGEWLENI 127 (224)
Q Consensus 81 a~al~~~p~llilDEp~~~lD---~-----~~~~~~~~~-g~tvi~~tH~~~~~~~ 127 (224)
..-.+.+|.++|+|||+++.+ . ..++.+.+. +.++|++||+.++...
T Consensus 104 il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 104 ILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 333446899999999966654 2 234556666 7899999999886543
No 421
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.37 E-value=1.7e-12 Score=114.94 Aligned_cols=129 Identities=20% Similarity=0.309 Sum_probs=88.1
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCC--------ccCCCeEEEEcCC--------CcccCC-CCccc-------
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLS--------DEFQKRVVIVDTS--------NEIGGD-GDIPH------- 58 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~--------~~~~~~i~~~~~~--------~~~~~~-~~~~~------- 58 (224)
--.+++|++++++|++||||||++++|+|... |+ +|.+.+-... .+..+. ..+..
T Consensus 403 NL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~-sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tG 481 (593)
T COG2401 403 NLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPD-SGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTG 481 (593)
T ss_pred eeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCC-CCceeccccchhhccCcccccccCchhHHHHHhhccC
Confidence 34689999999999999999999999999864 33 3444331110 000000 00000
Q ss_pred c---hhhHHhH------------cCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHH-HcCCEE
Q 027392 59 S---AIGTARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA-ERGVML 115 (224)
Q Consensus 59 ~---~~~~~~~------------~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~-~~g~tv 115 (224)
. ......+ +.-.|.||+.|..||.+++..|.+++.||-.+.||... +.+++ +.|.|+
T Consensus 482 D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTl 561 (593)
T COG2401 482 DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITL 561 (593)
T ss_pred chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeE
Confidence 0 0111112 22246899999999999999999999999999999543 23343 569999
Q ss_pred EEEEeCcchHHhhc-cce
Q 027392 116 IGTAHGEWLENIIK-NPI 132 (224)
Q Consensus 116 i~~tH~~~~~~~~~-d~v 132 (224)
+++||..++.+.+. |.+
T Consensus 562 ivvThrpEv~~AL~PD~l 579 (593)
T COG2401 562 IVVTHRPEVGNALRPDTL 579 (593)
T ss_pred EEEecCHHHHhccCCcee
Confidence 99999999888884 444
No 422
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.35 E-value=6.3e-12 Score=101.84 Aligned_cols=126 Identities=15% Similarity=0.179 Sum_probs=78.4
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHH
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIE 81 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la 81 (224)
++.++++|++++|+||||||||||+++|+++++++ .+.+. ++...++........+..... ......+.....-.+.
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~-ied~~E~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 94 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD-ERIIT-IEDTAELQLPHPNWVRLVTRP-GNVEGSGEVTMADLLR 94 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEE-ECCccccCCCCCCEEEEEEec-CCCCCCCccCHHHHHH
Confidence 45678999999999999999999999999999876 44444 443333321100000000000 0000112223344666
Q ss_pred HHHhcCCCEEEEeCCCChHhHHHHHHHHHcCCE-EEEEEeCcchHHhhccce
Q 027392 82 AVENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKNPI 132 (224)
Q Consensus 82 ~al~~~p~llilDEp~~~lD~~~~~~~~~~g~t-vi~~tH~~~~~~~~~d~v 132 (224)
.++..+|++++++|.........+ +....|.. ++.|.|..+..+ .-+|+
T Consensus 95 ~~lR~~pd~i~igEir~~ea~~~~-~a~~tGh~g~~~T~Ha~s~~~-~~~Rl 144 (186)
T cd01130 95 SALRMRPDRIIVGEVRGGEALDLL-QAMNTGHPGGMTTIHANSAEE-ALTRL 144 (186)
T ss_pred HHhccCCCEEEEEccCcHHHHHHH-HHHhcCCCCceeeecCCCHHH-HHHHH
Confidence 788899999999999876433333 44577887 899999987443 33444
No 423
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.34 E-value=1.9e-12 Score=118.26 Aligned_cols=193 Identities=22% Similarity=0.305 Sum_probs=114.4
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC-------CccHHHH
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP-------EPSLQHK 77 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~qr 77 (224)
=+.+|++++|.|+||+|||||+..++...... ++++.|+...+. ..+...+++++++. .......
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EEs-------~~qi~~ra~rlg~~~~~l~~~~e~~~~~ 161 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEES-------LQQIKMRAIRLGLPEPNLYVLSETNWEQ 161 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcCC-------HHHHHHHHHHcCCChHHeEEcCCCCHHH
Confidence 36899999999999999999999998877654 567777753221 11222222233321 1111111
Q ss_pred HHHHHHHhcCCCEEEEeCCCChH------------hHH----HHHH-HHHcCCEEEEEEeCcchHHhhccceeeeccCCe
Q 027392 78 VMIEAVENHMPEVIIVDEIGTEA------------EAH----ACRS-IAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 140 (224)
Q Consensus 78 ~~la~al~~~p~llilDEp~~~l------------D~~----~~~~-~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~ 140 (224)
.+..+-..+|+++++|..++-. +.. .+.. +++.|.|+++++|..........+++.|+.++.
T Consensus 162 -I~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~V 240 (454)
T TIGR00416 162 -ICANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTV 240 (454)
T ss_pred -HHHHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEE
Confidence 2223334689999999986521 111 1223 356799999999986532111223344343321
Q ss_pred eEEEcCCHHHHHHHhhHHHHhhcCCCceeEEEEEecceeE---------Eecc----chhHHHHHhcCCCce-eeEEeec
Q 027392 141 DTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYW---------VTHK----TEKSVDMLLRGKTPL-VEIRKRD 206 (224)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~----~~~~~~~~~~g~~~~-~e~~~~~ 206 (224)
+.+.+.. ....+..+.+++|+++......|++.++|.. ++.. .+.++.+.++|.+|+ +|+++..
T Consensus 241 -I~Le~~~-~~~~R~L~v~K~R~g~~~e~~~f~it~~Gl~~v~~ps~~f~~~~~~~~~g~~~~~~~~G~r~~~veVqalv 318 (454)
T TIGR00416 241 -LYFEGDR-DSRFRILRSVKNRFGATNEIGIFEMTEQGLREVLNPSAIFLSRREEPMSGSSITVTWEGTRPLLVEIQALV 318 (454)
T ss_pred -EEEeccC-CCcEEEEEEecCCCCCCCcEEEEEEecCCceecCChhHhhhccCCCCCCceEEEEEEEcccCEEEEEEEEe
Confidence 1222222 1222456677889998888899999999853 2211 122456778999998 4888865
Q ss_pred CC
Q 027392 207 DR 208 (224)
Q Consensus 207 ~~ 208 (224)
.+
T Consensus 319 ~~ 320 (454)
T TIGR00416 319 SP 320 (454)
T ss_pred cC
Confidence 43
No 424
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.34 E-value=2.9e-12 Score=113.72 Aligned_cols=125 Identities=14% Similarity=0.194 Sum_probs=87.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcCCccCCCe-----EEEEcCCCcccCCCCccc-------------ch----hh----
Q 027392 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKR-----VVIVDTSNEIGGDGDIPH-------------SA----IG---- 62 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~-----i~~~~~~~~~~~~~~~~~-------------~~----~~---- 62 (224)
-|++..+|.||.||||++++++|.++|+.++. +.|.+|.-.-.....+.+ +. ..
T Consensus 367 SeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~i 446 (592)
T KOG0063|consen 367 SEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQI 446 (592)
T ss_pred ceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhH
Confidence 37899999999999999999999999884443 333332111000000000 00 00
Q ss_pred ---HHhHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHH-HHcCCEEEEEEeCcchHHhhccc
Q 027392 63 ---TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSI-AERGVMLIGTAHGEWLENIIKNP 131 (224)
Q Consensus 63 ---~~~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~~-------~~~~-~~~g~tvi~~tH~~~~~~~~~d~ 131 (224)
....+.-.|||+.||+++|.+|-..+++.++|||.+-||.+. ++++ ...++|-+++.|+.-.+..++|+
T Consensus 447 e~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladr 526 (592)
T KOG0063|consen 447 ENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADR 526 (592)
T ss_pred HHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcce
Confidence 012344458999999999999999999999999999999442 2332 35678999999998778889999
Q ss_pred ee
Q 027392 132 IL 133 (224)
Q Consensus 132 v~ 133 (224)
++
T Consensus 527 vi 528 (592)
T KOG0063|consen 527 VI 528 (592)
T ss_pred eE
Confidence 95
No 425
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.33 E-value=8.2e-12 Score=100.32 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=70.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccC------CCCcccchh---hHHh----HcCCCCccHHH-
Q 027392 11 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG------DGDIPHSAI---GTAR----RMQVPEPSLQH- 76 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~------~~~~~~~~~---~~~~----~~~~~~~g~~q- 76 (224)
+++|.||||+|||||...++-..... +..+.|+........ ...++.... +... .....++++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 47899999999999987665433233 566766643211100 000000000 0000 00011355555
Q ss_pred -----HHHHHHHHhcCCCEEEEeCCCChHh---H-------HHHHHHHHcCCEEEEEEeCcch---------HHhhccce
Q 027392 77 -----KVMIEAVENHMPEVIIVDEIGTEAE---A-------HACRSIAERGVMLIGTAHGEWL---------ENIIKNPI 132 (224)
Q Consensus 77 -----r~~la~al~~~p~llilDEp~~~lD---~-------~~~~~~~~~g~tvi~~tH~~~~---------~~~~~d~v 132 (224)
......+...+|+++++|||++.+| . ..+..+++.|.|+|+++|.... ...+||.+
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~i 159 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGV 159 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEE
Confidence 4455555667999999999999887 2 2344566779999999998653 34556655
Q ss_pred e
Q 027392 133 L 133 (224)
Q Consensus 133 ~ 133 (224)
+
T Consensus 160 i 160 (187)
T cd01124 160 I 160 (187)
T ss_pred E
Confidence 4
No 426
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=99.32 E-value=1.6e-11 Score=108.66 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=80.7
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHh
Q 027392 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 85 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~ 85 (224)
..++.+++|.||+||||||+++++.+.+.+..++++.++....+....... .... ....+. ...-..-+++.+|.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~--~~i~-q~evg~--~~~~~~~~l~~~lr 193 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKR--SLIN-QREVGL--DTLSFANALRAALR 193 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCcc--ceEE-ccccCC--CCcCHHHHHHHhhc
Confidence 356789999999999999999999998764435777777654443211100 0000 001111 11223346888999
Q ss_pred cCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcchHHhhcccee
Q 027392 86 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 86 ~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
.+||+|++||+..........+....|..++.|.|..+-. ...+|++
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~aa~tGh~v~~T~Ha~~~~-~~~~Rl~ 240 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTAAETGHLVFGTLHTNSAA-QTIERII 240 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHcCCcEEEEEcCCCHH-HHHHHHH
Confidence 9999999999985544444455677899999999998744 3456664
No 427
>PRK13695 putative NTPase; Provisional
Probab=99.30 E-value=2.5e-11 Score=97.09 Aligned_cols=131 Identities=24% Similarity=0.231 Sum_probs=76.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCccCCCeE-EEEcCC-----CcccCCC-Ccc---cchhhH---------HhHcCCCC
Q 027392 11 SILFVGRPGVGKTTVMREIARVLSDEFQKRV-VIVDTS-----NEIGGDG-DIP---HSAIGT---------ARRMQVPE 71 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i-~~~~~~-----~~~~~~~-~~~---~~~~~~---------~~~~~~~~ 71 (224)
.++|+|+||||||||++.+++.+.+. +-.+ .++.+. ....+.. ... ...... .+.....+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ls 80 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLE 80 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehH
Confidence 58999999999999999998876542 2222 222110 0000000 000 000000 00011134
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEeCC--CChHh---HHHHHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCeeEEEc
Q 027392 72 PSLQHKVMIEAVENHMPEVIIVDEI--GTEAE---AHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 145 (224)
Q Consensus 72 ~g~~qr~~la~al~~~p~llilDEp--~~~lD---~~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~~~v~~ 145 (224)
++++....+.+....+|+++++||| +..++ .+.+..+.+.+.++|+++|+.. ...+++++. .+.+++++..
T Consensus 81 gle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~-~~~~~~~i~--~~~~~~i~~~ 156 (174)
T PRK13695 81 DLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRS-VHPFVQEIK--SRPGGRVYEL 156 (174)
T ss_pred HHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchh-hHHHHHHHh--ccCCcEEEEE
Confidence 5566666666666679999999995 43555 3455666678999999999853 556788876 3444565554
No 428
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.28 E-value=1.2e-11 Score=121.94 Aligned_cols=147 Identities=15% Similarity=0.181 Sum_probs=96.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccC--CCeEEEEc----------------CCCc-ccCC-----------
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--QKRVVIVD----------------TSNE-IGGD----------- 53 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~--~~~i~~~~----------------~~~~-~~~~----------- 53 (224)
-.+++|+.+.++||||||||||+++++|-+.... .+.+.|.+ +... ++..
T Consensus 136 g~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~r 215 (1391)
T KOG0065|consen 136 GIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAAR 215 (1391)
T ss_pred eeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHh
Confidence 3789999999999999999999999999886331 12333322 1110 0000
Q ss_pred -----CCccc----chh-----hHHhHcCC---------------CCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-
Q 027392 54 -----GDIPH----SAI-----GTARRMQV---------------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH- 103 (224)
Q Consensus 54 -----~~~~~----~~~-----~~~~~~~~---------------~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~- 103 (224)
..+++ +.. ...+.+++ -|||||+|+.++-+++.++.++++||+|+|||..
T Consensus 216 ck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsT 295 (1391)
T KOG0065|consen 216 CKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSST 295 (1391)
T ss_pred ccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHH
Confidence 00000 000 01122222 2599999999999999999999999999999932
Q ss_pred ------HHHHHH-HcCCEEEEEEeC-cchHHhhccceeeeccCCeeEEEcCCHHHHH
Q 027392 104 ------ACRSIA-ERGVMLIGTAHG-EWLENIIKNPILSDLIGGVDTVTLGDEEARA 152 (224)
Q Consensus 104 ------~~~~~~-~~g~tvi~~tH~-~~~~~~~~d~v~~~l~~~~~~v~~~~~~~~~ 152 (224)
.++.+. ..+.|++++-+. ..+...+-|.++ ++..|+.|..|+.+...
T Consensus 296 al~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~--lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 296 AFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVI--LLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred HHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhhee--eeeccceEEeccHHHHH
Confidence 334443 346788888777 344555666765 66677888888877654
No 429
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=1.2e-11 Score=121.00 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=67.4
Q ss_pred CCccHHHHHHHHHHHhcCC--CEEEEeCCCChHhHH-------HHHHHHHcCCEEEEEEeCcchHHhhccceeeecc---
Q 027392 70 PEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI--- 137 (224)
Q Consensus 70 ~~~g~~qr~~la~al~~~p--~llilDEp~~~lD~~-------~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~--- 137 (224)
.|+||+||+.||+++..+| +++||||||++||+. .++++++.|.|||+++|+++++. .||+++. |-
T Consensus 488 LSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~vi~-Lgpga 565 (924)
T TIGR00630 488 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADYVID-IGPGA 565 (924)
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCEEEE-ecccc
Confidence 3799999999999999986 899999999999954 35566778999999999998775 8999974 41
Q ss_pred --CCeeEEEcCCHHHHH
Q 027392 138 --GGVDTVTLGDEEARA 152 (224)
Q Consensus 138 --~~~~~v~~~~~~~~~ 152 (224)
.+|+++..+++....
T Consensus 566 G~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 566 GIHGGEVVASGTPEEIL 582 (924)
T ss_pred cCCCCEEeeccCHHHHh
Confidence 567888888877653
No 430
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=4.3e-11 Score=102.47 Aligned_cols=58 Identities=12% Similarity=0.002 Sum_probs=43.5
Q ss_pred CccHHHHHHHHHHHh---------cCCCEEEEeCCCChHhHHHHHH----HHHcCCEEEEEEeCcchHHhhc
Q 027392 71 EPSLQHKVMIEAVEN---------HMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEWLENIIK 129 (224)
Q Consensus 71 ~~g~~qr~~la~al~---------~~p~llilDEp~~~lD~~~~~~----~~~~g~tvi~~tH~~~~~~~~~ 129 (224)
|.||+|++.++++++ .+|+++++|||+++||...... +.+.+ .+++++|+......+|
T Consensus 185 S~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 185 SQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTTDLADFDALW 255 (270)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeCCchhccchh
Confidence 589999999999875 6999999999999999765433 33334 5666666655555565
No 431
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.26 E-value=1.4e-11 Score=119.17 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=74.2
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCC-ccCCCeEEEEcCC--CcccCCCCcccchhh----HHhHcCCCCccHHHHHHH
Q 027392 8 YGKSILFVGRPGVGKTTVMREIARVLS-DEFQKRVVIVDTS--NEIGGDGDIPHSAIG----TARRMQVPEPSLQHKVMI 80 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~-~~~~~~i~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~g~~qr~~l 80 (224)
.+.+++|+|||++||||+||.++...- ... |- +++.. ..++....+.. .++ ........+++|++++.+
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~-G~--~vpa~~~~~i~~~~~i~~-~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKS-GL--PIPANEPSEIPVFKEIFA-DIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHh-CC--CcccCCCccccccceEEE-ecCCccchhhchhHHHHHHHHHHHH
Confidence 346899999999999999999864421 110 10 11111 01110000000 000 001122235789988888
Q ss_pred HHHHhcCCCEEEEeCCCChHhHH--------HHHHHHHcCCEEEEEEeCcchHHhhccce
Q 027392 81 EAVENHMPEVIIVDEIGTEAEAH--------ACRSIAERGVMLIGTAHGEWLENIIKNPI 132 (224)
Q Consensus 81 a~al~~~p~llilDEp~~~lD~~--------~~~~~~~~g~tvi~~tH~~~~~~~~~d~v 132 (224)
++++ .+|.++|+|||++|+|+. .+..+.+.+.++|++||+.++....++..
T Consensus 402 l~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~ 460 (782)
T PRK00409 402 LEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNRE 460 (782)
T ss_pred HHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCC
Confidence 8776 789999999999999953 23445667899999999988777666544
No 432
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.26 E-value=1.4e-11 Score=120.78 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=66.9
Q ss_pred CccHHHHHHHHHHHhcCC--CEEEEeCCCChHhHH-------HHHHHHHcCCEEEEEEeCcchHHhhccceeeec-----
Q 027392 71 EPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDL----- 136 (224)
Q Consensus 71 ~~g~~qr~~la~al~~~p--~llilDEp~~~lD~~-------~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l----- 136 (224)
|+||+||+.||++|..+| +++||||||++||+. .++++++.|.|||+++|+++++. .||+++. |
T Consensus 491 SgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD~vi~-LgpgaG 568 (943)
T PRK00349 491 SGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AADYIVD-IGPGAG 568 (943)
T ss_pred CHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEE-eccccC
Confidence 799999999999999987 999999999999954 34566778999999999998775 6999973 3
Q ss_pred cCCeeEEEcCCHHHHH
Q 027392 137 IGGVDTVTLGDEEARA 152 (224)
Q Consensus 137 ~~~~~~v~~~~~~~~~ 152 (224)
.++|+++..++++...
T Consensus 569 ~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 569 VHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCCEEeeccCHHHHh
Confidence 1567888888877654
No 433
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.25 E-value=8.3e-11 Score=98.52 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=32.8
Q ss_pred ccceecCcEEEEEcCCCCcHHHH-HHHHHhcCCccCCCeEEEEc
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTV-MREIARVLSDEFQKRVVIVD 45 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTL-l~~i~g~l~~~~~~~i~~~~ 45 (224)
.--+++|++++|.|+|||||||| ++.+++.+.+ +.++.|+.
T Consensus 18 ~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~ 59 (230)
T PRK08533 18 GGGIPAGSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVS 59 (230)
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEe
Confidence 34588999999999999999999 6888887754 35556654
No 434
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.23 E-value=2.7e-11 Score=100.64 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=67.2
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCcc--------CCCeEEEEcCCCcccCCCCcccchhhHHhHcCC-CC--ccH
Q 027392 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDE--------FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-PE--PSL 74 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~g~ 74 (224)
.++|++++|+||||+||||++++++...--. ...++.+++ .+.. .++..+.+.. .| ..+
T Consensus 27 ~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~---~i~~-------~~~~~d~~~~~~StF~~e 96 (218)
T cd03286 27 ATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVD---RIFT-------RIGARDDIMKGESTFMVE 96 (218)
T ss_pred ecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEecccc---EEEE-------ecCcccccccCcchHHHH
Confidence 4568999999999999999999998864211 011111110 0000 0000000000 01 122
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCChHhHH--------HHHHHHHc-CCEEEEEEeCcchHHhhc
Q 027392 75 QHKVMIEAVENHMPEVIIVDEIGTEAEAH--------ACRSIAER-GVMLIGTAHGEWLENIIK 129 (224)
Q Consensus 75 ~qr~~la~al~~~p~llilDEp~~~lD~~--------~~~~~~~~-g~tvi~~tH~~~~~~~~~ 129 (224)
-+++.-....+.+|.++++|||++|.+.. .++.+.+. +.++|++||+.++...++
T Consensus 97 ~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 97 LSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 33333333334789999999998877632 24566665 899999999998777665
No 435
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.21 E-value=6e-11 Score=92.15 Aligned_cols=114 Identities=25% Similarity=0.206 Sum_probs=69.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCC---------CcccchhhHHhHcCCCCccHHHHHHHH
Q 027392 11 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG---------DIPHSAIGTARRMQVPEPSLQHKVMIE 81 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~qr~~la 81 (224)
+++|.||||+||||+++.+++...+. ++.+.+++......... .....................++.+.+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 47899999999999999999998765 67888775433221000 000000000000011122334456778
Q ss_pred HHHhcCCCEEEEeCCCChHhH-------------HHHH----HHHHcCCEEEEEEeCcchH
Q 027392 82 AVENHMPEVIIVDEIGTEAEA-------------HACR----SIAERGVMLIGTAHGEWLE 125 (224)
Q Consensus 82 ~al~~~p~llilDEp~~~lD~-------------~~~~----~~~~~g~tvi~~tH~~~~~ 125 (224)
.+...+|+++++||++.-++. +.+. .+++.+.++|+++|.....
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 888899999999999864332 1222 2334589999999997533
No 436
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.17 E-value=3.6e-10 Score=94.59 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=71.0
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHh-cCCccCCCeEEEEcCCCccc--------CCCCcccch-hh-------HHhHc
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIAR-VLSDEFQKRVVIVDTSNEIG--------GDGDIPHSA-IG-------TARRM 67 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g-~l~~~~~~~i~~~~~~~~~~--------~~~~~~~~~-~~-------~~~~~ 67 (224)
=+++|.++.|.|+||||||||...++- .+. . +.++.|+....... +...+.... .+ .....
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~-g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-Q-GKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-C-CCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccc
Confidence 368899999999999999999998853 333 3 57787775432110 000000000 00 00011
Q ss_pred CCCCccHHHHHHHHHHHhc--CCCEEEEeCCCChHh---HH----H---HHHHHHcCCEEEEEEeCcch
Q 027392 68 QVPEPSLQHKVMIEAVENH--MPEVIIVDEIGTEAE---AH----A---CRSIAERGVMLIGTAHGEWL 124 (224)
Q Consensus 68 ~~~~~g~~qr~~la~al~~--~p~llilDEp~~~lD---~~----~---~~~~~~~g~tvi~~tH~~~~ 124 (224)
...+.++.+.+......+. +|+++++|||++.++ .. . +..+++++.|+++++|...+
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAF 167 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcC
Confidence 1223455566665555554 899999999996544 22 1 23346678999999998654
No 437
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.15 E-value=9.2e-11 Score=107.10 Aligned_cols=190 Identities=22% Similarity=0.335 Sum_probs=109.0
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC-------C-ccHHH
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP-------E-PSLQH 76 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~g~~q 76 (224)
=+.+|+++.|.|+||+|||||+..++...... ++++.|+...+. +.+...+++++++. . ....
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees-------~~qi~~ra~rlg~~~~~l~~~~e~~l~- 146 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEES-------ASQIKLRAERLGLPSDNLYLLAETNLE- 146 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEcccc-------HHHHHHHHHHcCCChhcEEEeCCCCHH-
Confidence 36789999999999999999999998876543 567777753221 11222223333331 1 1111
Q ss_pred HHHHHHHHhcCCCEEEEeCCCChHh------------H----HHHHH-HHHcCCEEEEEEeCcchHHhhccceeeeccCC
Q 027392 77 KVMIEAVENHMPEVIIVDEIGTEAE------------A----HACRS-IAERGVMLIGTAHGEWLENIIKNPILSDLIGG 139 (224)
Q Consensus 77 r~~la~al~~~p~llilDEp~~~lD------------~----~~~~~-~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~ 139 (224)
..+......+|+++++|++++-.. . ..+.+ +++.+.++++++|..........+++.|+.+.
T Consensus 147 -~i~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~~~ag~~~lehlvD~ 225 (446)
T PRK11823 147 -AILATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEGAIAGPRVLEHMVDT 225 (446)
T ss_pred -HHHHHHHhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccCCCCcCCcchhhhhCeE
Confidence 122233346899999999965321 1 11223 35679999999997542111112223333221
Q ss_pred eeEEEcCCHHHHHHHhhHHHHhhcCCCceeEEEEEecceeEEecc-------------chhHHHHHhcCCCce-eeEEee
Q 027392 140 VDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTHK-------------TEKSVDMLLRGKTPL-VEIRKR 205 (224)
Q Consensus 140 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~g~~~~-~e~~~~ 205 (224)
. +.+.++... ..+..+.+++|+++......|++.+.|.....+ .+.+..+.++|.+++ .|+++.
T Consensus 226 V-i~le~~~~~-~~R~l~i~K~R~g~~~e~~~f~it~~Gi~~v~~ps~~~~~~~~~~~~g~~~~~~~~G~~~~~veVea~ 303 (446)
T PRK11823 226 V-LYFEGDRHS-RYRILRAVKNRFGATNEIGVFEMTEQGLREVSNPSELFLSERDENVPGSAVTVTMEGTRPLLVEIQAL 303 (446)
T ss_pred E-EEEEcCCCC-ceEEEEEccCCCCCCCceEEEEEcCCCceECCCHHHHHhcCCCCCCCceEEEEEEEcccceEEEEEEe
Confidence 1 112211111 224455678889888888889999988542211 112345667888888 477775
Q ss_pred c
Q 027392 206 D 206 (224)
Q Consensus 206 ~ 206 (224)
.
T Consensus 304 v 304 (446)
T PRK11823 304 V 304 (446)
T ss_pred e
Confidence 4
No 438
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.11 E-value=9.9e-10 Score=82.16 Aligned_cols=112 Identities=26% Similarity=0.317 Sum_probs=66.3
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhcC
Q 027392 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 87 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~~ 87 (224)
++..+.|.||+|+||||+++.++..+... ...+.++......... .................+....+..++.+....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGEDILEEV-LDQLLLIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEECCEEccccC-HHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 36789999999999999999999999764 2245555332111000 000000000001112234555666777777777
Q ss_pred CCEEEEeCCCChHhHHHH-------------HHHHHcCCEEEEEEeC
Q 027392 88 PEVIIVDEIGTEAEAHAC-------------RSIAERGVMLIGTAHG 121 (224)
Q Consensus 88 p~llilDEp~~~lD~~~~-------------~~~~~~g~tvi~~tH~ 121 (224)
|++|++||+..-.+.... ......+..+|.++|.
T Consensus 79 ~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 79 PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 899999999886553321 1122346788888884
No 439
>PRK13764 ATPase; Provisional
Probab=99.10 E-value=9.8e-10 Score=103.00 Aligned_cols=124 Identities=19% Similarity=0.280 Sum_probs=84.2
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHh
Q 027392 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 85 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~ 85 (224)
..++..+++.||+||||||++++|+..+... +..+..+....++.....+. + +....+.+. .....+|.
T Consensus 254 ~~~~~~ILIsG~TGSGKTTll~AL~~~i~~~-~riV~TiEDp~El~~~~~i~-q-------~~~~~~~~~--~~~~~lLR 322 (602)
T PRK13764 254 EERAEGILIAGAPGAGKSTFAQALAEFYADM-GKIVKTMESPRDLQVPPEIT-Q-------YSKLEGSME--ETADILLL 322 (602)
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHHHHhhC-CCEEEEECCCccccCCCcce-E-------EeeccccHH--HHHHHHHh
Confidence 4556789999999999999999999998654 45555676555553211111 1 100111111 12233477
Q ss_pred cCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEe---------------CcchHHhhccceeeeccCCeeE
Q 027392 86 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAH---------------GEWLENIIKNPILSDLIGGVDT 142 (224)
Q Consensus 86 ~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH---------------~~~~~~~~~d~v~~~l~~~~~~ 142 (224)
.+||++++||+-...+...+..+...|..++.|-| ++.....++|.++. + ..|++
T Consensus 323 ~rPD~IivGEiRd~Et~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~-I-~~G~I 392 (602)
T PRK13764 323 VRPDYTIYDEMRKTEDFKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIF-I-EDGEV 392 (602)
T ss_pred hCCCEEEECCCCCHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEE-E-eCCEE
Confidence 89999999999998888888788777888999999 55555667888863 4 44554
No 440
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=99.09 E-value=1.8e-09 Score=92.21 Aligned_cols=110 Identities=25% Similarity=0.321 Sum_probs=78.0
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC-CccHHHHHHHHHHHh
Q 027392 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP-EPSLQHKVMIEAVEN 85 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~qr~~la~al~ 85 (224)
.++.+++|.||+||||||+++.+...+.+. ..++..++...++.... .. .+.+. ..+.-..-.+..+|.
T Consensus 78 ~~~GlilisG~tGSGKTT~l~all~~i~~~-~~~iitiEdp~E~~~~~-~~--------q~~v~~~~~~~~~~~l~~~lR 147 (264)
T cd01129 78 KPHGIILVTGPTGSGKTTTLYSALSELNTP-EKNIITVEDPVEYQIPG-IN--------QVQVNEKAGLTFARGLRAILR 147 (264)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHhhhCCC-CCeEEEECCCceecCCC-ce--------EEEeCCcCCcCHHHHHHHHhc
Confidence 355699999999999999999887776543 46777776655543211 10 01111 123334456788888
Q ss_pred cCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcchHH
Q 027392 86 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLEN 126 (224)
Q Consensus 86 ~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~~~ 126 (224)
++||+++++|.........+.+....|..++.|.|..+-.+
T Consensus 148 ~~PD~i~vgEiR~~e~a~~~~~aa~tGh~v~tTlHa~~~~~ 188 (264)
T cd01129 148 QDPDIIMVGEIRDAETAEIAVQAALTGHLVLSTLHTNDAPG 188 (264)
T ss_pred cCCCEEEeccCCCHHHHHHHHHHHHcCCcEEEEeccCCHHH
Confidence 99999999999988776766777788999999999977443
No 441
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=99.08 E-value=6e-10 Score=95.12 Aligned_cols=120 Identities=23% Similarity=0.301 Sum_probs=78.2
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHH
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEA 82 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~ 82 (224)
...++.+..+++.|+.||||||+++.+...+++. ..++..+....++............ . .+.....-.+..
T Consensus 121 ~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv~iEd~~E~~l~~~~~~~~~~---~----~~~~~~~~~l~~ 192 (270)
T PF00437_consen 121 RSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE-DERIVTIEDPPELRLPGPNQIQIQT---R----RDEISYEDLLKS 192 (270)
T ss_dssp HHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEEEEESSS-S--SCSSEEEEEE---E----TTTBSHHHHHHH
T ss_pred hhccccceEEEEECCCccccchHHHHHhhhcccc-ccceEEeccccceeecccceEEEEe---e----cCcccHHHHHHH
Confidence 3456778999999999999999999999999775 5788887766665332111111000 0 123333446788
Q ss_pred HHhcCCCEEEEeCCCChHhHHHHHHHHHcCCEE-EEEEeCcchHHhhccce
Q 027392 83 VENHMPEVIIVDEIGTEAEAHACRSIAERGVML-IGTAHGEWLENIIKNPI 132 (224)
Q Consensus 83 al~~~p~llilDEp~~~lD~~~~~~~~~~g~tv-i~~tH~~~~~~~~~d~v 132 (224)
+|-.+||+++++|......... .+....|..+ +.|.|..+-. ..-+|+
T Consensus 193 ~LR~~pD~iiigEiR~~e~~~~-~~a~~tGh~~~~tT~Ha~s~~-~~i~Rl 241 (270)
T PF00437_consen 193 ALRQDPDVIIIGEIRDPEAAEA-IQAANTGHLGSLTTLHANSAE-DAIERL 241 (270)
T ss_dssp HTTS--SEEEESCE-SCHHHHH-HHHHHTT-EEEEEEEE-SSHH-HHHHHH
T ss_pred HhcCCCCcccccccCCHhHHHH-HHhhccCCceeeeeeecCCHH-HHHHHH
Confidence 8999999999999988766666 6667889888 8999998733 333444
No 442
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.07 E-value=2.9e-10 Score=101.20 Aligned_cols=127 Identities=18% Similarity=0.244 Sum_probs=90.2
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeE---------EEEcCCCcccC------------------CCCccc
Q 027392 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV---------VIVDTSNEIGG------------------DGDIPH 58 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i---------~~~~~~~~~~~------------------~~~~~~ 58 (224)
-.+|++.+++|.||-||||-+++++|.++|+.++-. .+. ...++.. ...++.
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~f-rgselq~yftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYF-RGSELQNYFTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhh-hhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence 468999999999999999999999999998743210 000 0011100 000010
Q ss_pred chhh---------------------------HHhHcCCCCccHHHHHHHHHHHhcCCCEEEEeCCCChHhHH-------H
Q 027392 59 SAIG---------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------A 104 (224)
Q Consensus 59 ~~~~---------------------------~~~~~~~~~~g~~qr~~la~al~~~p~llilDEp~~~lD~~-------~ 104 (224)
...+ ..+.....|+|+.||.++|.+-+++.|+.++|||.+-||.+ .
T Consensus 176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~ 255 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAIT 255 (592)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHH
Confidence 0000 01233345799999999999999999999999999999954 3
Q ss_pred HHHHHHcCCEEEEEEeCcchHHhhcccee
Q 027392 105 CRSIAERGVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 105 ~~~~~~~g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
++.+.+...-||++.||++..+.+.|-+.
T Consensus 256 IRsl~~p~~YiIVVEHDLsVLDylSDFiC 284 (592)
T KOG0063|consen 256 IRSLINPDRYIIVVEHDLSVLDYLSDFIC 284 (592)
T ss_pred HHHhhCCCCeEEEEEeechHHHhhhccee
Confidence 56666667889999999998888888875
No 443
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.04 E-value=2.9e-09 Score=88.08 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=40.5
Q ss_pred CCCccHHHHHHHHHHHh----cCCCEEEEeCCCChHhHHHHHH----HHHc--CCEEEEEEeCcchHHhhcccee
Q 027392 69 VPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHACRS----IAER--GVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 69 ~~~~g~~qr~~la~al~----~~p~llilDEp~~~lD~~~~~~----~~~~--g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
..|+||+..++||..++ ...+++|||||.++||...... +.+. ...+|++||+.... ..++..+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~-~~a~~~~ 209 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMF-EDADKLI 209 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHH-TT-SEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 35899999888885553 4679999999999999654332 2332 37899999998744 4566664
No 444
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=99.01 E-value=2.2e-09 Score=95.42 Aligned_cols=125 Identities=17% Similarity=0.215 Sum_probs=78.3
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCcc--CCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHH
Q 027392 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDE--FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 83 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~a 83 (224)
.+++..++|+||+||||||++++|++.+.+. ..+++..++...++.... ... ......+..+........-.+-.+
T Consensus 131 ~~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~-~~~-~~~~v~Q~~v~~~~~~~~~~l~~a 208 (358)
T TIGR02524 131 APQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDE-IET-ISASVCQSEIPRHLNNFAAGVRNA 208 (358)
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccc-ccc-ccceeeeeeccccccCHHHHHHHH
Confidence 3478899999999999999999999988532 234666665444432111 000 000000011111111223455668
Q ss_pred HhcCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcchHHhhcccee
Q 027392 84 ENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 84 l~~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
|-.+|+++++.|.-.........+....|..++.|-|..+.. ..-.|++
T Consensus 209 LR~~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~-~~i~Rl~ 257 (358)
T TIGR02524 209 LRRKPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVA-ETIRRLV 257 (358)
T ss_pred hccCCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHH-HHHHHHH
Confidence 889999999999876655555566778899999999998744 3445554
No 445
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=98.97 E-value=2.6e-09 Score=94.35 Aligned_cols=119 Identities=16% Similarity=0.186 Sum_probs=77.1
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHH
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIE 81 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la 81 (224)
+..++..+..++|.||+|||||||+++|++.++++ .++..++...++............ ..-+...++....-.+.
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~--~rivtiEd~~El~l~~~~~v~l~~--~~~~~~~~~~t~~~ll~ 230 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQ--ERLITIEDTLELVIPHENHVRLLY--SKNGAGLGAVTAEHLLQ 230 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHHHHHcccCCC--CCEEEECCCccccCCCCCEEEEEe--eccccCcCccCHHHHHH
Confidence 34578889999999999999999999999999875 456666555554321100000000 00011112233445677
Q ss_pred HHHhcCCCEEEEeCCCChHhHHHHHHHHHcCC-EEEEEEeCcchH
Q 027392 82 AVENHMPEVIIVDEIGTEAEAHACRSIAERGV-MLIGTAHGEWLE 125 (224)
Q Consensus 82 ~al~~~p~llilDEp~~~lD~~~~~~~~~~g~-tvi~~tH~~~~~ 125 (224)
.+|..+||.+++.|.........++. ...|. .++.|.|..+-.
T Consensus 231 ~~LR~~pD~IivGEiR~~ea~~~l~a-~~tGh~G~ltTiHa~s~~ 274 (344)
T PRK13851 231 ASLRMRPDRILLGEMRDDAAWAYLSE-VVSGHPGSISTIHGANPV 274 (344)
T ss_pred HHhcCCCCeEEEEeeCcHHHHHHHHH-HHhCCCcEEECCCCCCHH
Confidence 88999999999999987654444443 35565 488888997633
No 446
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=98.95 E-value=5.9e-09 Score=91.84 Aligned_cols=117 Identities=22% Similarity=0.226 Sum_probs=76.3
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHH
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 83 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~a 83 (224)
.++..+..++|.|++|||||||+++|...++++ .++..+++..++.... .+.........-+..+......-.+..+
T Consensus 155 ~~v~~~~nili~G~tgSGKTTll~aL~~~ip~~--~ri~tiEd~~El~l~~-~~n~~~~~~~~~~~~~~~~~~~~ll~~~ 231 (332)
T PRK13900 155 HAVISKKNIIISGGTSTGKTTFTNAALREIPAI--ERLITVEDAREIVLSN-HPNRVHLLASKGGQGRAKVTTQDLIEAC 231 (332)
T ss_pred HHHHcCCcEEEECCCCCCHHHHHHHHHhhCCCC--CeEEEecCCCcccccc-CCCEEEEEecCCCCCcCcCcHHHHHHHH
Confidence 356678899999999999999999999999764 6777776666654211 1111100000001111112233467788
Q ss_pred HhcCCCEEEEeCCCChHhHHHHHHHHHcCCE-EEEEEeCcch
Q 027392 84 ENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWL 124 (224)
Q Consensus 84 l~~~p~llilDEp~~~lD~~~~~~~~~~g~t-vi~~tH~~~~ 124 (224)
|..+||.++++|.-...-. .+.+..+.|.. ++.|.|..+-
T Consensus 232 LR~~PD~IivGEiR~~ea~-~~l~a~~tGh~G~~tTiHa~s~ 272 (332)
T PRK13900 232 LRLRPDRIIVGELRGAEAF-SFLRAINTGHPGSISTLHADSP 272 (332)
T ss_pred hccCCCeEEEEecCCHHHH-HHHHHHHcCCCcEEEEEecCCH
Confidence 9999999999999875333 33444567875 8899999763
No 447
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.91 E-value=1.1e-08 Score=92.99 Aligned_cols=138 Identities=16% Similarity=0.135 Sum_probs=80.1
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCc-cc-CC-CCcccchhhHHhHc-----CCCCccHHH
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-IG-GD-GDIPHSAIGTARRM-----QVPEPSLQH 76 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~-~~-~~-~~~~~~~~~~~~~~-----~~~~~g~~q 76 (224)
.+.+|++++|+|+||+|||||+++|++...++ .+.+...+++.. +. +. ...... ...+.+ .-.+..++.
T Consensus 154 ~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~-~gvI~~~Gerg~ev~e~~~~~l~~~--~l~r~v~vv~~~~~~~~~r~ 230 (438)
T PRK07721 154 TVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD-LNVIALIGERGREVREFIERDLGPE--GLKRSIVVVATSDQPALMRI 230 (438)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhcccCCC-eEEEEEEecCCccHHHHHHhhcChh--hhcCeEEEEECCCCCHHHHH
Confidence 57899999999999999999999999999887 466665544321 11 00 000000 000000 011233333
Q ss_pred HH-----HHHHHHh--cCCCEEEEe-----------------CC--CChHhHHHH-------HHHH--HcCC-----EEE
Q 027392 77 KV-----MIEAVEN--HMPEVIIVD-----------------EI--GTEAEAHAC-------RSIA--ERGV-----MLI 116 (224)
Q Consensus 77 r~-----~la~al~--~~p~llilD-----------------Ep--~~~lD~~~~-------~~~~--~~g~-----tvi 116 (224)
+. .+|.-+. .+-=+|++| || ++|+|+... +++. +.|. ||+
T Consensus 231 ~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVl 310 (438)
T PRK07721 231 KGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVL 310 (438)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEE
Confidence 32 1222221 223355667 54 456775433 3333 2465 899
Q ss_pred EEEeCcchHHhhccceeeeccCCeeEEEcCCHH
Q 027392 117 GTAHGEWLENIIKNPILSDLIGGVDTVTLGDEE 149 (224)
Q Consensus 117 ~~tH~~~~~~~~~d~v~~~l~~~~~~v~~~~~~ 149 (224)
+.+|+++ +.+|+++. .+.+|++++.++-.
T Consensus 311 v~~hdm~--e~i~d~v~--~i~dG~Ivls~~la 339 (438)
T PRK07721 311 VDGDDMN--EPIADTVR--GILDGHFVLDRQLA 339 (438)
T ss_pred EECCCCC--chhhhhEE--EecCEEEEEeccHH
Confidence 9999998 37999987 45667888876554
No 448
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.89 E-value=2.2e-08 Score=80.63 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=38.0
Q ss_pred hcCCCEEEEeCCCChHhHH-------HHHHHHHcCCEEEEEEeCcchHHhhccceeeeccCCe
Q 027392 85 NHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 140 (224)
Q Consensus 85 ~~~p~llilDEp~~~lD~~-------~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~~l~~~~ 140 (224)
.++--+.|||||-++|.+. .+..+.+.|..+|+.||..-+.. +-...+..+..+|
T Consensus 144 f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlA-iP~A~I~~~~~~g 205 (233)
T COG3910 144 FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLA-IPGAEIYEISESG 205 (233)
T ss_pred hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhhee-CCCcEEEEEecCC
Confidence 3678999999999988742 34567788999999999975433 3333333355544
No 449
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=98.89 E-value=1.6e-08 Score=87.99 Aligned_cols=117 Identities=24% Similarity=0.289 Sum_probs=77.3
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCcc-CCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHH
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMI 80 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~l 80 (224)
++.++..+..++|.|++||||||+++.|.+.++.. ...++..++...++.... +.. ... ...-..+. ..-++
T Consensus 125 L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~--~~~-v~~--~~~~~~~~--~~~~l 197 (299)
T TIGR02782 125 LREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAA--PNV-VQL--RTSDDAIS--MTRLL 197 (299)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCC--CCE-EEE--EecCCCCC--HHHHH
Confidence 45577788899999999999999999999998541 146777776665553211 110 000 00101112 23467
Q ss_pred HHHHhcCCCEEEEeCCCChHhHHHHHHHHHcCCE-EEEEEeCcchHH
Q 027392 81 EAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLEN 126 (224)
Q Consensus 81 a~al~~~p~llilDEp~~~lD~~~~~~~~~~g~t-vi~~tH~~~~~~ 126 (224)
..+|..+||.+++.|.-...-.. +-+....|.. ++.|.|..+-.+
T Consensus 198 ~~aLR~~pD~iivGEiR~~ea~~-~l~a~~tGh~G~~tTiHa~~~~~ 243 (299)
T TIGR02782 198 KATLRLRPDRIIVGEVRGGEALD-LLKAWNTGHPGGIATIHANNAKA 243 (299)
T ss_pred HHHhcCCCCEEEEeccCCHHHHH-HHHHHHcCCCCeEEeeccCCHHH
Confidence 88899999999999998764333 3344567775 888999977443
No 450
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=98.88 E-value=1.8e-08 Score=89.95 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=78.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCcc-CCCeEEEEcCCCcccCCCCcccchhh-HHhHcCCCCccHHHHHHHHHHH
Q 027392 7 HYGKSILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIG-TARRMQVPEPSLQHKVMIEAVE 84 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~qr~~la~al 84 (224)
.++..++|.||+||||||+++.+...+... ...++..++...++.... +..... ....++.... ...-++..+|
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~--~~~~~~~~q~evg~~~~--~~~~~l~~aL 222 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGS--PDDLLPPAQSQIGRDVD--SFANGIRLAL 222 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCC--CceeecccccccCCCcc--CHHHHHHHhh
Confidence 445589999999999999999999887422 135777776554542211 000000 0011111111 1234667788
Q ss_pred hcCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcchHHhhccce
Q 027392 85 NHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPI 132 (224)
Q Consensus 85 ~~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v 132 (224)
.++||+++++|.-.........++.+.|..++.|-|..+-.+ .-+|+
T Consensus 223 R~~PD~I~vGEiRd~et~~~al~aa~TGH~v~tTlHa~s~~~-ai~Rl 269 (372)
T TIGR02525 223 RRAPKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGE-AISRC 269 (372)
T ss_pred ccCCCEEeeCCCCCHHHHHHHHHHHhcCCcEEEeeCCCCHHH-HHHHH
Confidence 899999999999887666666677888999999999987443 33344
No 451
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.86 E-value=8.7e-09 Score=93.28 Aligned_cols=120 Identities=18% Similarity=0.172 Sum_probs=77.0
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCC-cccCCCCcccchhhH---H-----hHcCCCCccHH
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIGGDGDIPHSAIGT---A-----RRMQVPEPSLQ 75 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~---~-----~~~~~~~~g~~ 75 (224)
.+.+|+.++|+|+||+|||||+++|++...++ .+.+.++++.. +.. .+.....+. . ....-.+.+++
T Consensus 152 ~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~-~gvI~~iGerg~ev~---e~~~~~l~~~gl~~tvvv~~tsd~s~~~r 227 (432)
T PRK06793 152 TIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD-INVISLVGERGREVK---DFIRKELGEEGMRKSVVVVATSDESHLMQ 227 (432)
T ss_pred eecCCcEEEEECCCCCChHHHHHHHhccCCCC-eEEEEeCCCCcccHH---HHHHHHhhhcccceeEEEEECCCCCHHHH
Confidence 57899999999999999999999999999876 45555554431 110 000000000 0 00111357889
Q ss_pred HHHHHHHHHh-------cCCCEEEEeCCCChHhHHH-HHHH----HHcCCEEEEEEeCcchHHhh
Q 027392 76 HKVMIEAVEN-------HMPEVIIVDEIGTEAEAHA-CRSI----AERGVMLIGTAHGEWLENII 128 (224)
Q Consensus 76 qr~~la~al~-------~~p~llilDEp~~~lD~~~-~~~~----~~~g~tvi~~tH~~~~~~~~ 128 (224)
+|+..+++.. .++-+|++|+||+..|+.. +..+ -..|.+..+.+|-..+.++.
T Consensus 228 ~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 228 LRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMKKLLERS 292 (432)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeeeeeeccchhHHHHh
Confidence 9988887766 7899999999999998642 2111 22356777777754444443
No 452
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.84 E-value=4e-09 Score=86.92 Aligned_cols=34 Identities=6% Similarity=0.091 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCC-----ChHhHHHHHH
Q 027392 74 LQHKVMIEAVENHMPEVIIVDEIG-----TEAEAHACRS 107 (224)
Q Consensus 74 ~~qr~~la~al~~~p~llilDEp~-----~~lD~~~~~~ 107 (224)
++++..||++++.+|+++++|||| ++||+.....
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~ 195 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQ 195 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHH
Confidence 677789999999999999999999 9999765443
No 453
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.84 E-value=1.8e-08 Score=88.00 Aligned_cols=116 Identities=22% Similarity=0.312 Sum_probs=81.4
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchh-hHHhHcCC-CCccHHHHHH
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAI-GTARRMQV-PEPSLQHKVM 79 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~g~~qr~~ 79 (224)
+|.+++.+..+.++|++||||||+|+.+..++++. .++..++...++.. ++... ...-+-+. .+......-.
T Consensus 136 L~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~--~rivtIEdt~E~~~----~~~n~~~l~~r~~~~~~~~v~~~dl 209 (312)
T COG0630 136 LWLAIEARKSIIICGGTASGKTTLLNALLDFIPPE--ERIVTIEDTPELKL----PHENWVQLVTREGESGSSEVSLEDL 209 (312)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCch--hcEEEEeccccccC----CCCCEEEEEecCCCCCccccCHHHH
Confidence 57889999999999999999999999999999886 66776665555532 21110 00000000 0223345567
Q ss_pred HHHHHhcCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcch
Q 027392 80 IEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWL 124 (224)
Q Consensus 80 la~al~~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~ 124 (224)
+..|+-.+|+.||++|...... ..+-+....|+..+.|.|..+.
T Consensus 210 l~aalR~rPd~IivgEvrg~e~-~~~~~a~~tGh~~isT~ha~s~ 253 (312)
T COG0630 210 LRAALRQRPDYIIVGELRGREA-FVLFQAMQTGHGTISTIHADSP 253 (312)
T ss_pred HHHHHhcCCCeEEEeeeecHHH-HHHHHHHhcCCCceeEEecCCH
Confidence 8899999999999999977643 3444455678899999999763
No 454
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=98.83 E-value=5.1e-08 Score=89.98 Aligned_cols=108 Identities=24% Similarity=0.318 Sum_probs=75.0
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCC-CCccHHHHHHHHHHHhc
Q 027392 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-PEPSLQHKVMIEAVENH 86 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~qr~~la~al~~ 86 (224)
+..++++.||+||||||+++.+...+.+. ...+..+....++..... . +..+ ...|...--++-.+|.+
T Consensus 241 ~~GlilitGptGSGKTTtL~a~L~~l~~~-~~~iiTiEDpvE~~~~~~-~--------q~~v~~~~g~~f~~~lr~~LR~ 310 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLNTP-ERNILTVEDPVEYQIEGI-G--------QIQVNPKIGLTFAAGLRAILRQ 310 (486)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHhccCCC-CCcEEEEcCCeeeecCCC-c--------eEEEccccCccHHHHHHHHHhc
Confidence 34599999999999999999777766544 466777655444321110 0 0111 11233334567788899
Q ss_pred CCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcchH
Q 027392 87 MPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLE 125 (224)
Q Consensus 87 ~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~~ 125 (224)
+||++++.|.....-.....+....|+.|+.|-|..+-.
T Consensus 311 dPDvI~vGEiRd~eta~~a~~aa~tGHlvlsTlHa~sa~ 349 (486)
T TIGR02533 311 DPDIIMVGEIRDLETAQIAIQASLTGHLVLSTLHTNDAA 349 (486)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCcEEEEECCCCHH
Confidence 999999999988766666667778899999999997633
No 455
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=98.82 E-value=3.7e-08 Score=86.32 Aligned_cols=120 Identities=18% Similarity=0.263 Sum_probs=78.0
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCC--ccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHH
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--DEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVM 79 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~ 79 (224)
++.++..+..++|.|++|||||||++.|++.+. +. ..++..+++..++.... + +... +. .+......-.
T Consensus 141 L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~-~~rivtIEd~~El~~~~--~-~~v~----~~-~~~~~~~~~l 211 (319)
T PRK13894 141 IIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDP-TERVFIIEDTGEIQCAA--E-NYVQ----YH-TSIDVNMTAL 211 (319)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCC-CceEEEEcCCCccccCC--C-CEEE----Ee-cCCCCCHHHH
Confidence 345788899999999999999999999998742 22 35677776666653211 0 0000 00 0111123346
Q ss_pred HHHHHhcCCCEEEEeCCCChHhHHHHHHHHHcCCE-EEEEEeCcchHHhhccce
Q 027392 80 IEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKNPI 132 (224)
Q Consensus 80 la~al~~~p~llilDEp~~~lD~~~~~~~~~~g~t-vi~~tH~~~~~~~~~d~v 132 (224)
+..+|..+||.|++.|.-...... +.+....|.. .+.|.|..+-.. .-+|+
T Consensus 212 l~~aLR~~PD~IivGEiR~~Ea~~-~l~A~~tGh~G~~tTiHa~s~~~-ai~Rl 263 (319)
T PRK13894 212 LKTTLRMRPDRILVGEVRGPEALD-LLMAWNTGHEGGAATLHANNAKA-GLDRL 263 (319)
T ss_pred HHHHhcCCCCEEEEeccCCHHHHH-HHHHHHcCCCceEEEECCCCHHH-HHHHH
Confidence 788899999999999998764333 3344566764 788999987443 33444
No 456
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=98.81 E-value=3.4e-08 Score=87.28 Aligned_cols=124 Identities=20% Similarity=0.297 Sum_probs=78.8
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCC-CCccHHHHHHHH
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-PEPSLQHKVMIE 81 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~qr~~la 81 (224)
+.+++.+..++|.|++|||||||+++++++++++ .++.+++...++... .+.......+.-.. ..++....-.+.
T Consensus 172 ~~~v~~~~~ili~G~tGsGKTTll~al~~~i~~~--~riv~iEd~~El~~~--~~~~~~l~~r~~~~~g~~~~t~~~ll~ 247 (340)
T TIGR03819 172 RAIVAARLAFLISGGTGSGKTTLLSALLALVAPD--ERIVLVEDAAELRPD--HPHVVRLEARPANVEGAGAVTLTDLVR 247 (340)
T ss_pred HHHHhCCCeEEEECCCCCCHHHHHHHHHccCCCC--CcEEEECCcceecCC--CCCeeeEEeccccccCcCccCHHHHHH
Confidence 4567788899999999999999999999999876 455556555555321 11110000000000 012223344677
Q ss_pred HHHhcCCCEEEEeCCCChHhHHHHHHHHHcCCE-EEEEEeCcchHHhhccce
Q 027392 82 AVENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKNPI 132 (224)
Q Consensus 82 ~al~~~p~llilDEp~~~lD~~~~~~~~~~g~t-vi~~tH~~~~~~~~~d~v 132 (224)
.+|..+||.+++.|.-... ...+.+..+.|.. .+.|.|..+-.+ .-+|+
T Consensus 248 ~aLR~~PD~IivGEiRg~E-a~~~l~a~~tGh~G~~tTiHA~s~~~-~~~RL 297 (340)
T TIGR03819 248 QALRMRPDRIVVGEVRGAE-VVDLLAALNTGHDGGAGTLHANSPAD-VPARL 297 (340)
T ss_pred HHhccCCCeEEEeCcCcHH-HHHHHHHHHcCCCceEEeeCCCCHHH-HHHHH
Confidence 8899999999999998653 3333344567875 788889977433 33444
No 457
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=98.79 E-value=4e-08 Score=86.09 Aligned_cols=120 Identities=18% Similarity=0.268 Sum_probs=78.0
Q ss_pred cccceecCcEEEEEcCCCCcHHHHHHHHHhcCC--ccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHH
Q 027392 2 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--DEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVM 79 (224)
Q Consensus 2 ~~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~ 79 (224)
++.++..+..++|.|++|||||||++.|++.+. +. ..++..++...++.... +.. .. +. .+++....-.
T Consensus 137 L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~-~~rivtiEd~~El~~~~--~n~-v~----l~-~~~~~~~~~l 207 (323)
T PRK13833 137 IRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAP-EDRLVILEDTAEIQCAA--ENA-VA----LH-TSDTVDMARL 207 (323)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCC-CceEEEecCCcccccCC--CCE-EE----ec-cCCCcCHHHH
Confidence 345677888999999999999999999999873 22 35677776655653210 110 00 11 1122223446
Q ss_pred HHHHHhcCCCEEEEeCCCChHhHHHHHHHHHcCCE-EEEEEeCcchHHhhccce
Q 027392 80 IEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKNPI 132 (224)
Q Consensus 80 la~al~~~p~llilDEp~~~lD~~~~~~~~~~g~t-vi~~tH~~~~~~~~~d~v 132 (224)
+..+|..+||.+++.|.-... ...+.+....|.. .+.|.|..+-.+ .-+|+
T Consensus 208 v~~aLR~~PD~IivGEiRg~e-a~~~l~a~~tGh~G~itTiHA~s~~~-a~~Rl 259 (323)
T PRK13833 208 LKSTMRLRPDRIIVGEVRDGA-ALTLLKAWNTGHPGGVTTIHSNTAMS-ALRRL 259 (323)
T ss_pred HHHHhCCCCCEEEEeecCCHH-HHHHHHHHcCCCCceEEEECCCCHHH-HHHHH
Confidence 778889999999999998763 3333444566764 789999987443 33444
No 458
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.77 E-value=1.4e-08 Score=101.70 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=58.8
Q ss_pred HcCCCCccHHHHHHHHHHHhc----------CCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhh
Q 027392 66 RMQVPEPSLQHKVMIEAVENH----------MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENII 128 (224)
Q Consensus 66 ~~~~~~~g~~qr~~la~al~~----------~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~ 128 (224)
.+...|+|+++++.||++|+. +|++||+||||++||... +..+.+.|.+|+++||++.+...+
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhh
Confidence 345568999999999999985 799999999999999653 445666789999999999999999
Q ss_pred ccceee
Q 027392 129 KNPILS 134 (224)
Q Consensus 129 ~d~v~~ 134 (224)
|+++..
T Consensus 1027 ~~~i~v 1032 (1042)
T TIGR00618 1027 PHRILV 1032 (1042)
T ss_pred CCEEEE
Confidence 999853
No 459
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.77 E-value=4e-08 Score=83.26 Aligned_cols=126 Identities=16% Similarity=0.178 Sum_probs=79.3
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccC-CCeEE-E-EcCC-Cc-------c-----cCCCCccc-ch-------
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-QKRVV-I-VDTS-NE-------I-----GGDGDIPH-SA------- 60 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~-~~~i~-~-~~~~-~~-------~-----~~~~~~~~-~~------- 60 (224)
.+.+|+.++|+||+|+|||||++.+++.+.... ...+. + ..+. .+ + ......+. ..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 467899999999999999999999999886531 11222 2 2221 00 0 00000000 00
Q ss_pred hhHH------------------------hHc-----CCCCccH--------HHHHHHHHHHhcCCCEEEEeCCCChHhH-
Q 027392 61 IGTA------------------------RRM-----QVPEPSL--------QHKVMIEAVENHMPEVIIVDEIGTEAEA- 102 (224)
Q Consensus 61 ~~~~------------------------~~~-----~~~~~g~--------~qr~~la~al~~~p~llilDEp~~~lD~- 102 (224)
...+ +.+ ..+++|+ +|++++|+++..++++.+| +|+.+|.
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~ 169 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTG 169 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCC
Confidence 0000 000 1125788 9999999998889999999 9998872
Q ss_pred ---H--HHHHHHHcCCEEEEEEeCcchHHhhcccee
Q 027392 103 ---H--ACRSIAERGVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 103 ---~--~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
+ .+.+++..+.|.|+.+|.+... ...+.+.
T Consensus 170 ~~~~~~i~~~~~~~~~~~ivls~~la~~-~~~paI~ 204 (249)
T cd01128 170 SRMDDVIFEEFKGTGNMELVLDRRLAER-RIFPAID 204 (249)
T ss_pred CcccchHHHHHhcCCCcEEEEchHHhhC-CCCCeEE
Confidence 1 2445555678999999998744 3556664
No 460
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.75 E-value=8.3e-08 Score=82.34 Aligned_cols=118 Identities=22% Similarity=0.310 Sum_probs=78.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhcCCC
Q 027392 10 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 89 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~~p~ 89 (224)
..+++.||.||||||.+-.+...+.......|..+...-++-+.. ....+. -+.++... ..---+|-.||..+||
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~s--kkslI~-QREvG~dT--~sF~~aLraALReDPD 200 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHES--KKSLIN-QREVGRDT--LSFANALRAALREDPD 200 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcc--hHhhhh-HHHhcccH--HHHHHHHHHHhhcCCC
Confidence 389999999999999999999998776567777765433321100 000010 11222221 1223477889999999
Q ss_pred EEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcchHHhhcccee
Q 027392 90 VIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 90 llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
++++-|.---.-.......++.|.-|+.|-|-.+ +..--+|++
T Consensus 201 VIlvGEmRD~ETi~~ALtAAETGHLV~~TLHT~s-A~~ti~Rii 243 (353)
T COG2805 201 VILVGEMRDLETIRLALTAAETGHLVFGTLHTNS-AAKTIDRII 243 (353)
T ss_pred EEEEeccccHHHHHHHHHHHhcCCEEEEeccccc-HHHHHHHHH
Confidence 9999998654444555567789999999999987 445566764
No 461
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.74 E-value=3e-08 Score=97.12 Aligned_cols=112 Identities=20% Similarity=0.272 Sum_probs=64.5
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcC--------CccCCCeEEEEcCCCcccCCCCcccchhhHHhHc-CCCCccHHHHH
Q 027392 8 YGKSILFVGRPGVGKTTVMREIARVL--------SDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRM-QVPEPSLQHKV 78 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l--------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~qr~ 78 (224)
.+.++.|.|||.+||||+||.++-.. -|-....+.+++. +. -.++..+.+ .-.|.-+....
T Consensus 606 ~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~---I~-------triga~d~i~~g~STF~~E~~ 675 (854)
T PRK05399 606 ERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDR---IF-------TRIGASDDLASGRSTFMVEMT 675 (854)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCe---ee-------eccCcccccccCcccHHHHHH
Confidence 45789999999999999999986442 1211112222110 00 000000000 01122233444
Q ss_pred HHHHHHhc--CCCEEEEeCC---CChHhHH-----HHHHHHHc-CCEEEEEEeCcchHHhhcc
Q 027392 79 MIEAVENH--MPEVIIVDEI---GTEAEAH-----ACRSIAER-GVMLIGTAHGEWLENIIKN 130 (224)
Q Consensus 79 ~la~al~~--~p~llilDEp---~~~lD~~-----~~~~~~~~-g~tvi~~tH~~~~~~~~~d 130 (224)
.++.++.. ++.++|+||| |+.+|.. .++.+.+. +.+++++||..++. .+++
T Consensus 676 ~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~-~l~~ 737 (854)
T PRK05399 676 ETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELT-ELEE 737 (854)
T ss_pred HHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHH-HHhh
Confidence 55665554 8999999999 6667732 34566666 58999999996543 3443
No 462
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.72 E-value=2.3e-08 Score=93.96 Aligned_cols=64 Identities=11% Similarity=0.105 Sum_probs=52.8
Q ss_pred CCCccHHHHHHHHHHHhcC----CCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 69 VPEPSLQHKVMIEAVENHM----PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 69 ~~~~g~~qr~~la~al~~~----p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
..|+||++|++||++++.. |++||+|||++++|... +.++. ++.+||++||+...+. +||+++.
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~~~~vi~iTH~~~~~~-~ad~~~~ 514 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-ERHQVLCVTHLPQVAA-HADAHFK 514 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEEChHHHHH-hcCeEEE
Confidence 4589999999999999885 69999999999999643 33333 4799999999998775 8999864
No 463
>PRK09183 transposase/IS protein; Provisional
Probab=98.71 E-value=1.6e-08 Score=86.14 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=33.4
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~ 45 (224)
+++++|+.++|+||||+|||||+.+|+...... +..+.++.
T Consensus 97 ~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~-G~~v~~~~ 137 (259)
T PRK09183 97 SFIERNENIVLLGPSGVGKTHLAIALGYEAVRA-GIKVRFTT 137 (259)
T ss_pred CchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEe
Confidence 358999999999999999999999998765543 55666653
No 464
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.70 E-value=4.7e-08 Score=82.08 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhc-----------CCccCCCeEEEEc
Q 027392 9 GKSILFVGRPGVGKTTVMREIARV-----------LSDEFQKRVVIVD 45 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~-----------l~~~~~~~i~~~~ 45 (224)
|.+..|.||+|+|||||+-.++-- ..+...+++.|+.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 678899999999999999888742 1222257788775
No 465
>PRK08181 transposase; Validated
Probab=98.67 E-value=3.2e-08 Score=84.73 Aligned_cols=131 Identities=19% Similarity=0.255 Sum_probs=71.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHH
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 83 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~a 83 (224)
+|+.+++.+.|.||+|+|||.|+.+|+..+... +..+.|+... ++ ....... ..++...+. +.
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-g~~v~f~~~~-~L----------~~~l~~a-~~~~~~~~~--l~-- 163 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN-GWRVLFTRTT-DL----------VQKLQVA-RRELQLESA--IA-- 163 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc-CCceeeeeHH-HH----------HHHHHHH-HhCCcHHHH--HH--
Confidence 367889999999999999999999998766543 4566655321 11 0000000 011111111 11
Q ss_pred HhcCCCEEEEeCCCCh-Hh-------HHHHHHHHHcCCEEEEEEeC-cc-hHHhhc-----cceeeeccCCeeEEEcCCH
Q 027392 84 ENHMPEVIIVDEIGTE-AE-------AHACRSIAERGVMLIGTAHG-EW-LENIIK-----NPILSDLIGGVDTVTLGDE 148 (224)
Q Consensus 84 l~~~p~llilDEp~~~-lD-------~~~~~~~~~~g~tvi~~tH~-~~-~~~~~~-----d~v~~~l~~~~~~v~~~~~ 148 (224)
...++++||+||.... .+ .+.+....++ ..+|++|+. .. ....+. ++++..|.++..++.+...
T Consensus 164 ~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~ 242 (269)
T PRK08181 164 KLDKFDLLILDDLAYVTKDQAETSVLFELISARYER-RSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVE 242 (269)
T ss_pred HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC-CCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCc
Confidence 2368999999999542 22 1223333344 455666554 32 222333 3334446666776776555
Q ss_pred HHHH
Q 027392 149 EARA 152 (224)
Q Consensus 149 ~~~~ 152 (224)
+.+.
T Consensus 243 s~R~ 246 (269)
T PRK08181 243 SYRR 246 (269)
T ss_pred cchh
Confidence 5443
No 466
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.67 E-value=1.2e-07 Score=87.00 Aligned_cols=43 Identities=30% Similarity=0.431 Sum_probs=34.5
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCC-CeEEEEcCC
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-KRVVIVDTS 47 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~-~~i~~~~~~ 47 (224)
.+.+|.+++|+||||+||||++..|++.+....+ .+|.++..+
T Consensus 252 ~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~D 295 (484)
T PRK06995 252 LLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTD 295 (484)
T ss_pred cccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 4678999999999999999999999998855423 367776554
No 467
>PRK10436 hypothetical protein; Provisional
Probab=98.67 E-value=3.2e-07 Score=84.16 Aligned_cols=109 Identities=25% Similarity=0.315 Sum_probs=76.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC-CccHHHHHHHHHHHh
Q 027392 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP-EPSLQHKVMIEAVEN 85 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~qr~~la~al~ 85 (224)
.+..++++.||.||||||++..+...+... ..++..+....++...... +..+. ..|.-..-++-.+|-
T Consensus 216 ~~~GliLvtGpTGSGKTTtL~a~l~~~~~~-~~~i~TiEDPvE~~l~gi~---------Q~~v~~~~g~~f~~~lr~~LR 285 (462)
T PRK10436 216 QPQGLILVTGPTGSGKTVTLYSALQTLNTA-QINICSVEDPVEIPLAGIN---------QTQIHPKAGLTFQRVLRALLR 285 (462)
T ss_pred hcCCeEEEECCCCCChHHHHHHHHHhhCCC-CCEEEEecCCccccCCCcc---------eEeeCCccCcCHHHHHHHHhc
Confidence 355699999999999999998877776544 5677777655454221100 11111 123334557778888
Q ss_pred cCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcchH
Q 027392 86 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLE 125 (224)
Q Consensus 86 ~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~~ 125 (224)
++||+|++.|.-...-....-+.+..|..|+.|-|..+-.
T Consensus 286 ~dPDvI~vGEIRD~eta~~al~AA~TGHlVlsTlHa~~a~ 325 (462)
T PRK10436 286 QDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTS 325 (462)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHcCCcEEEeeccCChH
Confidence 9999999999987766666666777899999999987633
No 468
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.66 E-value=1e-07 Score=71.85 Aligned_cols=103 Identities=24% Similarity=0.391 Sum_probs=59.8
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhcC
Q 027392 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 87 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~~ 87 (224)
.+..+.|.||+|+||||+++.++..+... +..+.+++...... ...... .... ..+..........+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~~------~~~~~~--~~~~----~~~~~~~~~~~~~~ 84 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLLE------GLVVAE--LFGH----FLVRLLFELAEKAK 84 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhhh------hhHHHH--Hhhh----hhHhHHHHhhccCC
Confidence 47899999999999999999999988543 34555543221110 000000 0000 02233445556678
Q ss_pred CCEEEEeCCCCh--HhHHH----HHHHHH-----cCCEEEEEEeCcc
Q 027392 88 PEVIIVDEIGTE--AEAHA----CRSIAE-----RGVMLIGTAHGEW 123 (224)
Q Consensus 88 p~llilDEp~~~--lD~~~----~~~~~~-----~g~tvi~~tH~~~ 123 (224)
+.++++||.... ..... +..... .+..+|++++...
T Consensus 85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 999999999753 11122 222221 3567888877643
No 469
>PRK10869 recombination and repair protein; Provisional
Probab=98.64 E-value=6.3e-08 Score=90.76 Aligned_cols=64 Identities=9% Similarity=0.077 Sum_probs=52.3
Q ss_pred CCCccHHHHHHHHHHHhc----CCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 69 VPEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 69 ~~~~g~~qr~~la~al~~----~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
..|+|+++|++||++++. +|+++|+|||++++|... +.++. .+.+||++||+...+ .+||+.+.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~-~~~qvi~iTH~~~~~-~~ad~~~~ 504 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG-ESTQVMCVTHLPQVA-GCGHQHFF 504 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEE
Confidence 458999999999999996 589999999999999653 23333 468999999999866 68888864
No 470
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=98.64 E-value=3.6e-07 Score=85.92 Aligned_cols=107 Identities=22% Similarity=0.324 Sum_probs=75.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC-CccHHHHHHHHHHHhc
Q 027392 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP-EPSLQHKVMIEAVENH 86 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~qr~~la~al~~ 86 (224)
+.-++++.||.||||||++..+...+.+. ..++..+....+..... + . +..+. +.|.-..-++..+|.+
T Consensus 315 ~~Glilv~G~tGSGKTTtl~a~l~~~~~~-~~~i~tiEdpvE~~~~~-~-~-------q~~v~~~~g~~~~~~l~~~LR~ 384 (564)
T TIGR02538 315 PQGMVLVTGPTGSGKTVSLYTALNILNTE-EVNISTAEDPVEINLPG-I-N-------QVNVNPKIGLTFAAALRSFLRQ 384 (564)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhCCC-CceEEEecCCceecCCC-c-e-------EEEeccccCCCHHHHHHHHhcc
Confidence 45599999999999999998888877544 46777766554442211 0 0 11111 2244445578889999
Q ss_pred CCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcch
Q 027392 87 MPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWL 124 (224)
Q Consensus 87 ~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~ 124 (224)
+||+|++.|.....-....-+....|..|+.|-|..+-
T Consensus 385 dPDvI~vGEiRd~eta~~a~~aa~tGHlv~tTlHa~~a 422 (564)
T TIGR02538 385 DPDIIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNDA 422 (564)
T ss_pred CCCEEEeCCCCCHHHHHHHHHHHHcCCcEEEEeccCCH
Confidence 99999999998765555556677789999999998763
No 471
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.61 E-value=3.1e-07 Score=83.81 Aligned_cols=109 Identities=25% Similarity=0.315 Sum_probs=75.3
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC-CccHHHHHHHHHHHhc
Q 027392 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP-EPSLQHKVMIEAVENH 86 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~qr~~la~al~~ 86 (224)
+-.++++.||.||||||+|..+...+... ..+|..+...-++...+ + .++++. .-|+----++-..|-+
T Consensus 257 p~GliLvTGPTGSGKTTTLY~~L~~ln~~-~~nI~TiEDPVE~~~~g-I--------~Q~qVN~k~gltfa~~LRa~LRq 326 (500)
T COG2804 257 PQGLILVTGPTGSGKTTTLYAALSELNTP-ERNIITIEDPVEYQLPG-I--------NQVQVNPKIGLTFARALRAILRQ 326 (500)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcCC-CceEEEeeCCeeeecCC-c--------ceeecccccCCCHHHHHHHHhcc
Confidence 34499999999999999999988888655 45577665443432111 0 011111 1243334467778889
Q ss_pred CCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcchHH
Q 027392 87 MPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLEN 126 (224)
Q Consensus 87 ~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~~~ 126 (224)
+||+|++.|+--..-.+..-+....|..|+.|-|-.+-..
T Consensus 327 DPDvImVGEIRD~ETAeiavqAalTGHLVlSTlHtnda~~ 366 (500)
T COG2804 327 DPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTNDAPG 366 (500)
T ss_pred CCCeEEEeccCCHHHHHHHHHHHhcCCeEeeecccCchHH
Confidence 9999999999766556666677788999999999876443
No 472
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.60 E-value=2.9e-07 Score=80.66 Aligned_cols=89 Identities=26% Similarity=0.302 Sum_probs=55.9
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCC--------CccHHHHH
Q 027392 7 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP--------EPSLQHKV 78 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~qr~ 78 (224)
.+|++++|+|||||||||++..|++.+.+. +++|.+++.+..... . ..+.....++.+++ .......-
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~Li~~D~~r~~--a-~eql~~~a~~~~i~~~~~~~~~dpa~~v~~ 187 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLLAAGDTFRAA--A-IEQLQVWGERVGVPVIAQKEGADPASVAFD 187 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEEEecCccchh--h-HHHHHHHHHHcCceEEEeCCCCCHHHHHHH
Confidence 368999999999999999999999999876 678888765431100 0 00111111121211 11112222
Q ss_pred HHHHHHhcCCCEEEEeCCCCh
Q 027392 79 MIEAVENHMPEVIIVDEIGTE 99 (224)
Q Consensus 79 ~la~al~~~p~llilDEp~~~ 99 (224)
++..+...+.|++|+|=|...
T Consensus 188 ~l~~~~~~~~D~ViIDTaGr~ 208 (318)
T PRK10416 188 AIQAAKARGIDVLIIDTAGRL 208 (318)
T ss_pred HHHHHHhCCCCEEEEeCCCCC
Confidence 455667788999999999763
No 473
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.60 E-value=5.6e-08 Score=91.01 Aligned_cols=65 Identities=9% Similarity=0.092 Sum_probs=50.5
Q ss_pred CCCccHHHHHHHHHHHh----------cCCCEEEEeCCC-ChHhHHHHHH----HHH-cCCEEEEEEeCcchHHhhccce
Q 027392 69 VPEPSLQHKVMIEAVEN----------HMPEVIIVDEIG-TEAEAHACRS----IAE-RGVMLIGTAHGEWLENIIKNPI 132 (224)
Q Consensus 69 ~~~~g~~qr~~la~al~----------~~p~llilDEp~-~~lD~~~~~~----~~~-~g~tvi~~tH~~~~~~~~~d~v 132 (224)
-.|+||+||++||++++ .+|+++|||||+ ++||...... +.+ .+.+||++||+.... ..++++
T Consensus 468 ~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~-~~~d~~ 546 (562)
T PHA02562 468 SFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDP-QKFDRH 546 (562)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhch-hhhhcE
Confidence 35799999999999887 589999999998 6899654322 222 478999999997655 467888
Q ss_pred ee
Q 027392 133 LS 134 (224)
Q Consensus 133 ~~ 134 (224)
+.
T Consensus 547 ~~ 548 (562)
T PHA02562 547 LK 548 (562)
T ss_pred EE
Confidence 64
No 474
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.59 E-value=7.1e-08 Score=98.62 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=53.2
Q ss_pred CCCCccHHH------HHHHHHHHhcCCCEEEEeCCCChHhHHHH-------HHHH-----HcCCEEEEEEeCcchHHhhc
Q 027392 68 QVPEPSLQH------KVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIA-----ERGVMLIGTAHGEWLENIIK 129 (224)
Q Consensus 68 ~~~~~g~~q------r~~la~al~~~p~llilDEp~~~lD~~~~-------~~~~-----~~g~tvi~~tH~~~~~~~~~ 129 (224)
+-.|+|++| |++||++++.+|++|+|||||++||.... ..+. ..|.+||++||++.++..+|
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~ 1277 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLG 1277 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHh
Confidence 345899999 99999999999999999999999996532 2331 23789999999999998887
Q ss_pred cce
Q 027392 130 NPI 132 (224)
Q Consensus 130 d~v 132 (224)
...
T Consensus 1278 ~~~ 1280 (1311)
T TIGR00606 1278 RSE 1280 (1311)
T ss_pred hcc
Confidence 543
No 475
>PRK04296 thymidine kinase; Provisional
Probab=98.58 E-value=5.4e-07 Score=73.26 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=59.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC--CCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhc
Q 027392 9 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--SNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 86 (224)
Q Consensus 9 Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~ 86 (224)
|.++.+.||+|+||||++..++-..... +.++.++.. +...+ ........-.......+.+.... .........
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~-g~~v~i~k~~~d~~~~-~~~i~~~lg~~~~~~~~~~~~~~--~~~~~~~~~ 77 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER-GMKVLVFKPAIDDRYG-EGKVVSRIGLSREAIPVSSDTDI--FELIEEEGE 77 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc-CCeEEEEecccccccc-CCcEecCCCCcccceEeCChHHH--HHHHHhhCC
Confidence 7899999999999999987777655433 566666532 11110 00000000000000001111111 001111335
Q ss_pred CCCEEEEeCCCCh-Hh-H-HHHHHHHHcCCEEEEEEeCc
Q 027392 87 MPEVIIVDEIGTE-AE-A-HACRSIAERGVMLIGTAHGE 122 (224)
Q Consensus 87 ~p~llilDEp~~~-lD-~-~~~~~~~~~g~tvi~~tH~~ 122 (224)
+++++++||...- .+ . +.++.+++.|.+||++.++.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~ 116 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDT 116 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 7899999999542 12 2 34455678899999999883
No 476
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.57 E-value=5e-07 Score=75.96 Aligned_cols=107 Identities=18% Similarity=0.245 Sum_probs=54.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcC--------CccCCCeEEEEcCCCcccCCCCcccchhhHHhHcC-CCC--ccHHHHH
Q 027392 10 KSILFVGRPGVGKTTVMREIARVL--------SDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQ-VPE--PSLQHKV 78 (224)
Q Consensus 10 e~~~l~G~nGsGKTTLl~~i~g~l--------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~g~~qr~ 78 (224)
.++.|.|||.+||||+||.++-.. -|-....+..++ .+.. .++..+... -.| ..+-+++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d---~I~t-------~~~~~d~~~~~~S~F~~E~~~~ 113 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFD---RIFT-------RIGDDDSIESGLSTFMAEMKRL 113 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--S---EEEE-------EES---SSTTSSSHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeeccccccccc---EEEe-------ecccccccccccccHHHhHHHH
Confidence 489999999999999999987443 121111111111 0000 000000000 001 1122222
Q ss_pred HHHHHHhcCCCEEEEeCCCChHh--------HHHHHHHHH-cCCEEEEEEeCcchHH
Q 027392 79 MIEAVENHMPEVIIVDEIGTEAE--------AHACRSIAE-RGVMLIGTAHGEWLEN 126 (224)
Q Consensus 79 ~la~al~~~p~llilDEp~~~lD--------~~~~~~~~~-~g~tvi~~tH~~~~~~ 126 (224)
.-..-.+.+-.++|+||+..|-+ ...++.+.+ .+..+|++||..++..
T Consensus 114 ~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 114 SSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp HHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred HhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 22222235678999999976543 234566777 4889999999987544
No 477
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.54 E-value=1.6e-07 Score=83.79 Aligned_cols=90 Identities=21% Similarity=0.266 Sum_probs=53.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCC-CeEEEEcCCCcccCCCCcccchhhHHhHcCCC-----CccHHHH
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-KRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP-----EPSLQHK 77 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~qr 77 (224)
.++++|++++|+||||+||||++..|++.+....+ .+|.++..+.... .-.++.....+.++++ +++..
T Consensus 132 ~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~---ga~EqL~~~a~~~gv~~~~~~~~~~l-- 206 (374)
T PRK14722 132 ALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRI---GGHEQLRIFGKILGVPVHAVKDGGDL-- 206 (374)
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccc---cHHHHHHHHHHHcCCceEecCCcccH--
Confidence 46788999999999999999999999987543222 4676664432210 0011111122233332 22222
Q ss_pred HHHHHHHhcCCCEEEEeCCCCh
Q 027392 78 VMIEAVENHMPEVIIVDEIGTE 99 (224)
Q Consensus 78 ~~la~al~~~p~llilDEp~~~ 99 (224)
..+..-..+.+++|+|.|...
T Consensus 207 -~~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 207 -QLALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred -HHHHHHhcCCCEEEEcCCCCC
Confidence 122233478899999999654
No 478
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.54 E-value=1.3e-07 Score=94.60 Aligned_cols=67 Identities=12% Similarity=0.027 Sum_probs=56.0
Q ss_pred cCCCCccHHHHHHHHHHHhc--------CCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccc
Q 027392 67 MQVPEPSLQHKVMIEAVENH--------MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNP 131 (224)
Q Consensus 67 ~~~~~~g~~qr~~la~al~~--------~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~ 131 (224)
+.-.|||++++++|+++|.. +|++||+||||++||... +..+.+.|.+|+++||...+.+.+..+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 44568999999999999985 899999999999999653 455667899999999988877777766
Q ss_pred ee
Q 027392 132 IL 133 (224)
Q Consensus 132 v~ 133 (224)
+.
T Consensus 1027 i~ 1028 (1047)
T PRK10246 1027 IK 1028 (1047)
T ss_pred EE
Confidence 63
No 479
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.50 E-value=5.8e-07 Score=79.12 Aligned_cols=128 Identities=23% Similarity=0.262 Sum_probs=72.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhcC
Q 027392 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 87 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~~ 87 (224)
.++.+.|.||+|+|||+|+.+|+..+... +..|.|+... .+ +................ . ...+.+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~-g~~V~y~t~~-~l----------~~~l~~~~~~~~~~~~~-~--~~~l~~ 246 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR-GKSVIYRTAD-EL----------IEILREIRFNNDKELEE-V--YDLLIN 246 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEEHH-HH----------HHHHHHHHhccchhHHH-H--HHHhcc
Confidence 45789999999999999999999987544 5667665421 11 00010100111111111 1 234468
Q ss_pred CCEEEEeCCCChH-h---H----HHHHHHHHcCCEEEEEEeC-cc-hHHhhccceeeeccCCeeEEEcCCHHH
Q 027392 88 PEVIIVDEIGTEA-E---A----HACRSIAERGVMLIGTAHG-EW-LENIIKNPILSDLIGGVDTVTLGDEEA 150 (224)
Q Consensus 88 p~llilDEp~~~l-D---~----~~~~~~~~~g~tvi~~tH~-~~-~~~~~~d~v~~~l~~~~~~v~~~~~~~ 150 (224)
+|+||+|+..... . . ..+....+.++.+|+||.. .. +...+.++++..|.++..++.+.+.+.
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~d~ 319 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYGEDI 319 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCcCh
Confidence 9999999996542 1 1 2233334555656666554 33 234456666666666666666544443
No 480
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.49 E-value=1.2e-06 Score=72.79 Aligned_cols=39 Identities=31% Similarity=0.368 Sum_probs=29.2
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHh-cCCccCCCeEEEEc
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIAR-VLSDEFQKRVVIVD 45 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g-~l~~~~~~~i~~~~ 45 (224)
=+++|++++|.|+||+|||||+..++. .+.+ +..+.|+.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is 55 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVT 55 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEE
Confidence 478999999999999999999987652 2332 35555554
No 481
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.46 E-value=4.6e-07 Score=73.01 Aligned_cols=41 Identities=24% Similarity=0.500 Sum_probs=29.5
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEc
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 45 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~ 45 (224)
++++.++.+.|.||+|+|||.|..+|+..+... +..+.|+.
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~~v~f~~ 82 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVAIANEAIRK-GYSVLFIT 82 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEE
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHHHHHHhccC-CcceeEee
Confidence 478899999999999999999999998766554 56666664
No 482
>PRK03918 chromosome segregation protein; Provisional
Probab=98.46 E-value=4.9e-07 Score=89.01 Aligned_cols=66 Identities=11% Similarity=0.020 Sum_probs=51.0
Q ss_pred CCCCccHHHH------HHHHHHHhcCCCEEEEeCCCChHhHHH-------HHHHHHcCCEEEEEEeCcchHHhhccceee
Q 027392 68 QVPEPSLQHK------VMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 134 (224)
Q Consensus 68 ~~~~~g~~qr------~~la~al~~~p~llilDEp~~~lD~~~-------~~~~~~~g~tvi~~tH~~~~~~~~~d~v~~ 134 (224)
...|+|++++ ++++++++.+|+++|+||||++||... +..+...+.+||++||+..+. .+||+++.
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~-~~~d~~~~ 865 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK-DAADYVIR 865 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH-HhCCeEEE
Confidence 4458999994 555667888999999999999999653 233344577999999998754 57998864
No 483
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.45 E-value=8.7e-07 Score=89.74 Aligned_cols=125 Identities=20% Similarity=0.209 Sum_probs=68.9
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC----CCcccCCCC-cccc--------hhh-HHhHcCCCC
Q 027392 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT----SNEIGGDGD-IPHS--------AIG-TARRMQVPE 71 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~----~~~~~~~~~-~~~~--------~~~-~~~~~~~~~ 71 (224)
...+++++|+|++|+|||||++.+++.+...+.+.+.+... ......... .... ... .....++..
T Consensus 204 ~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~ 283 (1153)
T PLN03210 204 SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI 283 (1153)
T ss_pred cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCccc
Confidence 45678999999999999999999988776665555543210 000000000 0000 000 000111110
Q ss_pred ccHHHHHHHHHHHhcCCCEEEEeCCCChHhHHHHHHHH---HcCCEEEEEEeCcchHHhh-cccee
Q 027392 72 PSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA---ERGVMLIGTAHGEWLENII-KNPIL 133 (224)
Q Consensus 72 ~g~~qr~~la~al~~~p~llilDEp~~~lD~~~~~~~~---~~g~tvi~~tH~~~~~~~~-~d~v~ 133 (224)
. ..-.+...+..++-+|+||+.......+.+.... ..|.+||+|||+...+... +++++
T Consensus 284 ~---~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~ 346 (1153)
T PLN03210 284 Y---HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIY 346 (1153)
T ss_pred C---CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEE
Confidence 0 0012223355677799999986654455554332 3578999999998766543 45543
No 484
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.45 E-value=1.9e-07 Score=85.14 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=32.4
Q ss_pred ccceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE
Q 027392 3 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 43 (224)
Q Consensus 3 ~~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~ 43 (224)
+-.+++||+++|+||+||||||||+ +++..|+.++.|.+
T Consensus 26 sl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~l 64 (504)
T TIGR03238 26 NKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFL 64 (504)
T ss_pred ceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEE
Confidence 3468999999999999999999999 67777774445665
No 485
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.43 E-value=1.4e-07 Score=87.21 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=24.6
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHH--HhcCC
Q 027392 6 LHYGKSILFVGRPGVGKTTVMREI--ARVLS 34 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i--~g~l~ 34 (224)
+++|..++|.|+||||||||.... .|...
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~ 48 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH 48 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 678999999999999999999877 34443
No 486
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.40 E-value=1.1e-06 Score=74.44 Aligned_cols=122 Identities=20% Similarity=0.296 Sum_probs=86.8
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHh
Q 027392 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 85 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~ 85 (224)
+.+-..+.++|+.||||||.+-.+.|....+..|.|..+...-++-.. .+.-+-..+.+++.. ....+++--+|.
T Consensus 124 ~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIEDPIEfih~---h~~CIvTQREvGvDT--esw~~AlkNtlR 198 (375)
T COG5008 124 LAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIEDPIEFIHK---HKRCIVTQREVGVDT--ESWEVALKNTLR 198 (375)
T ss_pred cccCceEEEECCCCCCchhhHHHHhcccccCCCCceEEecChHHHHhc---ccceeEEeeeeccch--HHHHHHHHHHHh
Confidence 344558999999999999999999998877666777776543222100 000011112344433 334578888999
Q ss_pred cCCCEEEEeCCCChHhHHHHHHHHHcCCEEEEEEeCcchHHhhcccee
Q 027392 86 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPIL 133 (224)
Q Consensus 86 ~~p~llilDEp~~~lD~~~~~~~~~~g~tvi~~tH~~~~~~~~~d~v~ 133 (224)
+.||++++-|.-+-.-.+....+++.|.-++.+-|..+ +.+.-+|++
T Consensus 199 QapDvI~IGEvRsretMeyAi~fAeTGHLcmaTLHAN~-anQaleRIi 245 (375)
T COG5008 199 QAPDVILIGEVRSRETMEYAIQFAETGHLCMATLHANN-ANQALERII 245 (375)
T ss_pred cCCCeEEEeecccHhHHHHHHHHHhcCceEEEEeccCC-chHHHHHHH
Confidence 99999999999887777778888999999999999876 555556664
No 487
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.40 E-value=2.1e-07 Score=68.76 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=24.8
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHH
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIA 30 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~ 30 (224)
-.+++|++++|+||+|||||||++++.
T Consensus 10 l~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 10 VDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 367899999999999999999999986
No 488
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.40 E-value=3.1e-06 Score=70.21 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=29.5
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcC
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 46 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~ 46 (224)
=+++|.++.|.|+||+||||+...++-..-.. +..+.|+..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~ 52 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISL 52 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEC
Confidence 36789999999999999999977665322122 467777643
No 489
>PTZ00035 Rad51 protein; Provisional
Probab=98.39 E-value=3.6e-06 Score=74.40 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=33.2
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCC-cc----CCCeEEEEcCC
Q 027392 6 LHYGKSILFVGRPGVGKTTVMREIARVLS-DE----FQKRVVIVDTS 47 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~-~~----~~~~i~~~~~~ 47 (224)
+++|+++.|.||||||||||+..++.... |. .++.+.|++..
T Consensus 115 i~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE 161 (337)
T PTZ00035 115 IETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTE 161 (337)
T ss_pred CCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEcc
Confidence 68899999999999999999999886543 20 24677787654
No 490
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.39 E-value=2.6e-07 Score=75.96 Aligned_cols=29 Identities=41% Similarity=0.431 Sum_probs=27.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027392 7 HYGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 7 ~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
++|++++|.||||||||||++.|++++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 67999999999999999999999999864
No 491
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.38 E-value=1.2e-06 Score=79.27 Aligned_cols=90 Identities=19% Similarity=0.249 Sum_probs=50.8
Q ss_pred ceecCcEEEEEcCCCCcHHHHHHHHHhcCCccC-CCeEEEEcCCC-cccCCCCcccchhhHHhHcCCCC--ccHHHHHHH
Q 027392 5 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-QKRVVIVDTSN-EIGGDGDIPHSAIGTARRMQVPE--PSLQHKVMI 80 (224)
Q Consensus 5 ~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~-~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~g~~qr~~l 80 (224)
.+++|++++|+||||+||||+++.|++...... ...+.++..+. .++ ...+.....+.++++- ......+..
T Consensus 187 ~~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rig----alEQL~~~a~ilGvp~~~v~~~~dl~~ 262 (420)
T PRK14721 187 IIEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIG----GHEQLRIYGKLLGVSVRSIKDIADLQL 262 (420)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchh----HHHHHHHHHHHcCCceecCCCHHHHHH
Confidence 457899999999999999999999998642110 12333332221 111 1112222233444431 112223344
Q ss_pred HHHHhcCCCEEEEeCCCC
Q 027392 81 EAVENHMPEVIIVDEIGT 98 (224)
Q Consensus 81 a~al~~~p~llilDEp~~ 98 (224)
+..-..+.+++++|.+..
T Consensus 263 al~~l~~~d~VLIDTaGr 280 (420)
T PRK14721 263 MLHELRGKHMVLIDTVGM 280 (420)
T ss_pred HHHHhcCCCEEEecCCCC
Confidence 445567889999998743
No 492
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.38 E-value=8.5e-07 Score=81.09 Aligned_cols=123 Identities=14% Similarity=0.239 Sum_probs=70.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCcc-CCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHhcCCC
Q 027392 11 SILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 89 (224)
Q Consensus 11 ~~~l~G~nGsGKTTLl~~i~g~l~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~~~p~ 89 (224)
.+.|.||+|+|||+|+++++..+... .+.++.|+... .+ ..... ..+. .+... .+...+..+|+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~-~f------~~~~~---~~~~--~~~~~---~f~~~~~~~~d 196 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE-KF------LNDLV---DSMK--EGKLN---EFREKYRKKVD 196 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH-HH------HHHHH---HHHh--cccHH---HHHHHHHhcCC
Confidence 58999999999999999999876422 13466665421 11 00111 0111 11110 11122224799
Q ss_pred EEEEeCCCChHhH--------HHHHHHHHcCCEEEEEE-eCcchHHhhccceeeeccCCeeEEEcCCHH
Q 027392 90 VIIVDEIGTEAEA--------HACRSIAERGVMLIGTA-HGEWLENIIKNPILSDLIGGVDTVTLGDEE 149 (224)
Q Consensus 90 llilDEp~~~lD~--------~~~~~~~~~g~tvi~~t-H~~~~~~~~~d~v~~~l~~~~~~v~~~~~~ 149 (224)
+|++|||+..++. ..+..+.+.++.+|+++ |.......+.+++...+.. |-++.+..|+
T Consensus 197 vLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~-gl~v~i~~pd 264 (440)
T PRK14088 197 VLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM-GLVAKLEPPD 264 (440)
T ss_pred EEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhc-CceEeeCCCC
Confidence 9999999865431 22445666777777766 6776666677777654433 3345554544
No 493
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.37 E-value=1.7e-06 Score=68.06 Aligned_cols=114 Identities=28% Similarity=0.405 Sum_probs=61.0
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEE-EE-----cCCCcccCC---------CCcccchhh--HHhHcCCC
Q 027392 8 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-IV-----DTSNEIGGD---------GDIPHSAIG--TARRMQVP 70 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~-~~-----~~~~~~~~~---------~~~~~~~~~--~~~~~~~~ 70 (224)
.--.++|.|+||+||||+++-|+..+... +.++. ++ ......++. ..+.....+ ..-++.+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 34568999999999999999999888654 22221 11 000011100 000000000 00112222
Q ss_pred CccHHHH--HHHHHHHhcCCCEEEEeCCCChHh-----HHHHHHHHHcCCEEEEEEeCcc
Q 027392 71 EPSLQHK--VMIEAVENHMPEVIIVDEIGTEAE-----AHACRSIAERGVMLIGTAHGEW 123 (224)
Q Consensus 71 ~~g~~qr--~~la~al~~~p~llilDEp~~~lD-----~~~~~~~~~~g~tvi~~tH~~~ 123 (224)
-.+.... -+|-+|+. ..|++|+||+....- .+++.+..++++.+|.|-|..+
T Consensus 83 v~~le~i~~~al~rA~~-~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrs 141 (179)
T COG1618 83 VEGLEEIAIPALRRALE-EADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRS 141 (179)
T ss_pred HHHHHHHhHHHHHHHhh-cCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 1222111 13445543 389999999987532 3456666677888999999753
No 494
>PRK01156 chromosome segregation protein; Provisional
Probab=98.36 E-value=8.9e-07 Score=87.49 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=51.1
Q ss_pred CCCCccHHHHHHH------HHHHhcCCCEEEEeCCCChHhHHHHHH--------HHHc-C-CEEEEEEeCcchHHhhccc
Q 027392 68 QVPEPSLQHKVMI------EAVENHMPEVIIVDEIGTEAEAHACRS--------IAER-G-VMLIGTAHGEWLENIIKNP 131 (224)
Q Consensus 68 ~~~~~g~~qr~~l------a~al~~~p~llilDEp~~~lD~~~~~~--------~~~~-g-~tvi~~tH~~~~~~~~~d~ 131 (224)
...|+|+++++++ |++++.+|++++|||||++||...... +... + .++|++||+..+. .+||+
T Consensus 800 ~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~d~ 878 (895)
T PRK01156 800 DSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SVADV 878 (895)
T ss_pred ccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-HhcCe
Confidence 3458999999865 488889999999999999999654221 2232 3 4899999999876 58999
Q ss_pred eee
Q 027392 132 ILS 134 (224)
Q Consensus 132 v~~ 134 (224)
++.
T Consensus 879 ii~ 881 (895)
T PRK01156 879 AYE 881 (895)
T ss_pred EEE
Confidence 865
No 495
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.36 E-value=3.9e-07 Score=60.61 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=25.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCcc
Q 027392 8 YGKSILFVGRPGVGKTTVMREIARVLSDE 36 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~ 36 (224)
.|.+++|.|||||||||++.++.-++-+.
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 46799999999999999999998887654
No 496
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.36 E-value=3.8e-06 Score=82.26 Aligned_cols=43 Identities=12% Similarity=0.049 Sum_probs=33.9
Q ss_pred HhcCCCEEEEeCCCChH-hHH-------HHHHHHHcCCEEEEEEeCcchHH
Q 027392 84 ENHMPEVIIVDEIGTEA-EAH-------ACRSIAERGVMLIGTAHGEWLEN 126 (224)
Q Consensus 84 l~~~p~llilDEp~~~l-D~~-------~~~~~~~~g~tvi~~tH~~~~~~ 126 (224)
+..+|.++++|||..+| |.. .++.+++.|.+++++||+.+...
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~ 699 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAE 699 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh
Confidence 35799999999999999 432 23455677899999999987654
No 497
>PRK06526 transposase; Provisional
Probab=98.36 E-value=2.1e-07 Score=79.11 Aligned_cols=39 Identities=26% Similarity=0.496 Sum_probs=30.9
Q ss_pred cceecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEE
Q 027392 4 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 43 (224)
Q Consensus 4 ~~i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~ 43 (224)
++++.++.+.|+||+|+|||+|+..|+...... +.++.+
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~-g~~v~f 131 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQA-GHRVLF 131 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHC-CCchhh
Confidence 578889999999999999999999998765433 344433
No 498
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.34 E-value=3.8e-07 Score=73.35 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=26.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHhcCCc
Q 027392 8 YGKSILFVGRPGVGKTTVMREIARVLSD 35 (224)
Q Consensus 8 ~Ge~~~l~G~nGsGKTTLl~~i~g~l~~ 35 (224)
+|++++|+|+|||||||++++|++++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6999999999999999999999999865
No 499
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.34 E-value=2.5e-06 Score=77.03 Aligned_cols=100 Identities=18% Similarity=0.318 Sum_probs=58.4
Q ss_pred eecCcEEEEEcCCCCcHHHHHHHHHhcCCccCCCeEEEEcCCCcccCCCCcccchhhHHhHcCCCCccHHHHHHHHHHHh
Q 027392 6 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 85 (224)
Q Consensus 6 i~~Ge~~~l~G~nGsGKTTLl~~i~g~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~qr~~la~al~ 85 (224)
+.++.-++|.||||+|||||++++++.+... ...+. ...+ . ..+ +..+...-+-.+..|..
T Consensus 176 l~~pkgvLL~GppGTGKT~LAkalA~~l~~~----fi~i~-~s~l------~-------~k~-~ge~~~~lr~lf~~A~~ 236 (398)
T PTZ00454 176 IDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT----FIRVV-GSEF------V-------QKY-LGEGPRMVRDVFRLARE 236 (398)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcCCC----EEEEe-hHHH------H-------HHh-cchhHHHHHHHHHHHHh
Confidence 4567789999999999999999999976532 11111 0110 0 000 11111222335566667
Q ss_pred cCCCEEEEeCCCC----------hHhHH---H----HHHHH----HcCCEEEEEEeCcch
Q 027392 86 HMPEVIIVDEIGT----------EAEAH---A----CRSIA----ERGVMLIGTAHGEWL 124 (224)
Q Consensus 86 ~~p~llilDEp~~----------~lD~~---~----~~~~~----~~g~tvi~~tH~~~~ 124 (224)
..|.+|++||+.+ +.|.. . +..+. ..+..+|++||..+.
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 8999999999642 23321 1 22221 135678999998653
No 500
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.33 E-value=3.6e-06 Score=67.25 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=30.9
Q ss_pred HHHHHhcCCCEEEEeCCCChHh-----HHHHHHHHHcCCEEEEEEeCc---chHHhhccc
Q 027392 80 IEAVENHMPEVIIVDEIGTEAE-----AHACRSIAERGVMLIGTAHGE---WLENIIKNP 131 (224)
Q Consensus 80 la~al~~~p~llilDEp~~~lD-----~~~~~~~~~~g~tvi~~tH~~---~~~~~~~d~ 131 (224)
|..++ .+++++++||.....- .+++..+.+.++.+|.|-|.. .+.+.++.+
T Consensus 89 L~~~~-~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~~~~~l~~i~~~ 147 (168)
T PF03266_consen 89 LRNAL-SSSDLIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKRSDNPFLEEIKRR 147 (168)
T ss_dssp CHHHH-HCCHEEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS--SCCHHHHHTT
T ss_pred HHhhc-CCCCEEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecCCCcHHHHHHHhC
Confidence 33444 7899999999977533 456666667778999998886 245555543
Done!