BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027393
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 92/139 (66%), Gaps = 4/139 (2%)
Query: 83 ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
+SWSPR +L NFLS EECDY+ ARP + S+VVD ++GK + S +RTS+G + + E
Sbjct: 25 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 84
Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNL--KRGGQRI 200
+I IEKR++ + +P+EN E +QVL Y Q Y+PH+DYF D N + GGQR+
Sbjct: 85 DS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRV 142
Query: 201 ATMLMYLSDNVEGGETYFP 219
TMLMYL+ EGGET P
Sbjct: 143 VTMLMYLTTVEEGGETVLP 161
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 92/139 (66%), Gaps = 4/139 (2%)
Query: 83 ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
+SWSPR +L NFLS EECDY+ ARP + S+VVD ++GK + S +RTS+G + + E
Sbjct: 17 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 76
Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNL--KRGGQRI 200
+I IEKR++ + +P+EN E +QVL Y Q Y+PH+DYF D N + GGQR+
Sbjct: 77 DS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRV 134
Query: 201 ATMLMYLSDNVEGGETYFP 219
TMLMYL+ EGGET P
Sbjct: 135 VTMLMYLTTVEEGGETVLP 153
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 92/139 (66%), Gaps = 4/139 (2%)
Query: 83 ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
+SWSPR +L NFLS EECDY+ ARP + S+VVD ++GK + S +RTS+G + + E
Sbjct: 16 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 75
Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNL--KRGGQRI 200
+I IEKR++ + +P+EN E +QVL Y Q Y+PH+DYF D N + GGQR+
Sbjct: 76 DS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRV 133
Query: 201 ATMLMYLSDNVEGGETYFP 219
TMLMYL+ EGGET P
Sbjct: 134 VTMLMYLTTVEEGGETVLP 152
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 89/139 (64%), Gaps = 4/139 (2%)
Query: 83 ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
+SWSPR +L NFLS EECDY+ ARP S+VVD ++GK + S +RTS+G + + E
Sbjct: 25 LSWSPRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 84
Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNL--KRGGQRI 200
+I IEKR++ + +P+EN E +QVL Y Q Y+PH+DYF D N + GGQR+
Sbjct: 85 DS--VISKIEKRVAQVTXIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRV 142
Query: 201 ATMLMYLSDNVEGGETYFP 219
T L YL+ EGGET P
Sbjct: 143 VTXLXYLTTVEEGGETVLP 161
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 80/135 (59%), Gaps = 9/135 (6%)
Query: 87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYP 146
P I+VL N LS EECD L +++ L S V ++ +++RTSSG FL E
Sbjct: 39 PLIVVLGNVLSDEECDELIELSKSKLARSKVGSSRD----VNDIRTSSGAFLDDNE---- 90
Query: 147 MIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMY 206
+ IEKRIS VP +GE + +L YE DQ YK H+DYF++ + RI+T++ Y
Sbjct: 91 LTAKIEKRISSIXNVPASHGEGLHILNYEVDQQYKAHYDYFAE-HSRSAANNRISTLVXY 149
Query: 207 LSDNVEGGETYFPMV 221
L+D EGGET+FP +
Sbjct: 150 LNDVEEGGETFFPKL 164
>pdb|2P4E|P Chain P, Crystal Structure Of Pcsk9
pdb|2P4E|A Chain A, Crystal Structure Of Pcsk9
Length = 692
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 144 KYPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKP 182
K P + IE+ SVF+Q N E I RY D+Y P
Sbjct: 136 KLPHVDYIEEDSSVFAQSIPWNLERITPPRYRADEYQPP 174
>pdb|3TZE|A Chain A, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
pdb|3TZE|B Chain B, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
Length = 406
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 63 FWDNDKEAELLRLGYVKPEVISWSPR---ILVLHNFLS 97
F D+D+E E R GY+K E+ S + ++V+ F+S
Sbjct: 346 FLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVS 383
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 118 VDTKTGK--GIKSNVRT-SSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLRY 174
VD TG+ G + +V + F++ EK IQ IEK + +V ENG+L++ R
Sbjct: 233 VDALTGEILGDRDHVAIFPASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRL 292
Query: 175 EKDQYY 180
E+ Y
Sbjct: 293 EQRTRY 298
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 118 VDTKTGK--GIKSNVRT-SSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLRY 174
VD TG+ G + +V + F++ EK IQ IEK + +V ENG+L++ R
Sbjct: 227 VDALTGEILGDRDHVAIFPASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRL 286
Query: 175 EKDQYY 180
E+ Y
Sbjct: 287 EQRTRY 292
>pdb|3NN1|A Chain A, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Imidazole
pdb|3NN1|B Chain B, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Imidazole
pdb|3NN1|C Chain C, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Imidazole
pdb|3NN1|D Chain D, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Imidazole
pdb|3NN1|E Chain E, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Imidazole
pdb|3NN2|A Chain A, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Cyanide
pdb|3NN2|B Chain B, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Cyanide
pdb|3NN2|C Chain C, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Cyanide
pdb|3NN2|D Chain D, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Cyanide
pdb|3NN2|E Chain E, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Cyanide
Length = 241
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 63 FWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTK- 121
+WD E+ ++ + VK V WS +ILV ++L D+ + R H + T+ DT+
Sbjct: 28 WWDLPGESRVISVAEVKGLVEQWSGKILV-ESYLLRGLSDHADLMFRVHAR--TLSDTQQ 84
Query: 122 ---TGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENG 166
G + +SG L KK + + + QV E+G
Sbjct: 85 FLSAFMGTRLGRHLTSGGLLHGVSKKPTYVAGFPESMKTELQVNGESG 132
>pdb|3NN3|A Chain A, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
pdb|3NN3|B Chain B, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
pdb|3NN3|C Chain C, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
pdb|3NN3|D Chain D, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
pdb|3NN3|E Chain E, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
Length = 241
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 63 FWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTK- 121
+WD E+ ++ + VK V WS +ILV ++L D+ + R H + T+ DT+
Sbjct: 28 WWDLPGESRVISVAEVKGLVEQWSGKILV-ESYLLRGLSDHADLMFRVHAR--TLSDTQQ 84
Query: 122 ---TGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENG 166
G + +SG L KK + + + QV E+G
Sbjct: 85 FLSAFMGTRLGRHLTSGGLLHGVSKKPTYVAGFPESMKTELQVNGESG 132
>pdb|3NN4|A Chain A, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173k Mutant
pdb|3NN4|B Chain B, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173k Mutant
pdb|3NN4|C Chain C, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173k Mutant
pdb|3NN4|D Chain D, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173k Mutant
pdb|3NN4|E Chain E, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173k Mutant
Length = 241
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 63 FWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTK- 121
+WD E+ ++ + VK V WS +ILV ++L D+ + R H + T+ DT+
Sbjct: 28 WWDLPGESRVISVAEVKGLVEQWSGKILV-ESYLLRGLSDHADLMFRVHAR--TLSDTQQ 84
Query: 122 ---TGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENG 166
G + +SG L KK + + + QV E+G
Sbjct: 85 FLSAFMGTRLGRHLTSGGLLHGVSKKPTYVAGFPESMKTELQVNGESG 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,908,549
Number of Sequences: 62578
Number of extensions: 284927
Number of successful extensions: 589
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 571
Number of HSP's gapped (non-prelim): 20
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)