Query 027393
Match_columns 224
No_of_seqs 225 out of 1155
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:17:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1591 Prolyl 4-hydroxylase a 100.0 1.3E-42 2.8E-47 302.2 13.3 172 48-223 55-236 (289)
2 PLN00052 prolyl 4-hydroxylase; 100.0 1.6E-39 3.6E-44 285.9 16.8 146 74-221 41-186 (310)
3 smart00702 P4Hc Prolyl 4-hydro 99.9 3.3E-26 7.1E-31 186.8 13.9 132 87-223 1-135 (178)
4 PRK05467 Fe(II)-dependent oxyg 99.6 1.5E-15 3.3E-20 128.6 11.3 123 89-221 2-137 (226)
5 PHA02813 hypothetical protein; 99.3 5.6E-12 1.2E-16 111.5 9.6 115 100-221 24-144 (354)
6 PHA02869 C4L/C10L-like gene fa 99.2 2E-11 4.2E-16 109.5 8.2 100 112-220 45-152 (418)
7 PF13661 2OG-FeII_Oxy_4: 2OG-F 98.7 3.2E-08 6.9E-13 69.0 4.9 54 165-222 9-66 (70)
8 PF13640 2OG-FeII_Oxy_3: 2OG-F 98.6 3.9E-08 8.5E-13 72.4 3.3 46 169-221 1-49 (100)
9 PF03336 Pox_C4_C10: Poxvirus 97.7 0.00019 4.1E-09 63.9 8.7 89 126-219 36-127 (339)
10 COG3128 PiuC Uncharacterized i 97.6 0.0003 6.6E-09 57.7 7.6 119 89-218 4-137 (229)
11 PHA02866 Hypothetical protein; 97.3 0.00062 1.3E-08 59.5 6.4 96 111-219 31-129 (333)
12 TIGR02408 ectoine_ThpD ectoine 96.1 0.055 1.2E-06 47.2 9.7 131 82-218 24-164 (277)
13 COG3751 EGL-9 Predicted prolin 96.0 0.04 8.8E-07 47.5 8.5 49 168-222 137-189 (252)
14 PF05721 PhyH: Phytanoyl-CoA d 94.4 0.051 1.1E-06 43.7 3.9 120 89-218 6-143 (211)
15 PF03171 2OG-FeII_Oxy: 2OG-Fe( 93.6 0.048 1E-06 39.5 2.1 41 167-221 2-45 (98)
16 KOG3710 EGL-Nine (EGLN) protei 91.1 2.1 4.5E-05 36.7 9.0 121 88-221 54-196 (280)
17 KOG3200 Uncharacterized conser 90.9 1.7 3.6E-05 35.7 8.0 97 82-187 7-108 (224)
18 PF13532 2OG-FeII_Oxy_2: 2OG-F 90.3 1.4 3.1E-05 35.6 7.4 41 147-187 76-117 (194)
19 TIGR01762 chlorin-enz chlorina 89.0 5.7 0.00012 34.9 10.6 125 85-218 13-152 (288)
20 PHA02923 hypothetical protein; 83.8 5.3 0.00012 35.4 7.4 66 145-222 43-110 (315)
21 KOG3959 2-Oxoglutarate- and ir 75.7 3.8 8.2E-05 35.2 3.8 94 87-188 72-175 (306)
22 PRK15401 alpha-ketoglutarate-d 71.3 22 0.00048 30.0 7.4 41 147-187 96-136 (213)
23 PF09859 Oxygenase-NA: Oxygena 57.1 13 0.00029 30.1 3.3 45 168-219 63-110 (173)
24 TIGR00568 alkb DNA alkylation 56.1 23 0.00049 28.7 4.6 41 146-186 74-114 (169)
25 KOG3844 Predicted component of 51.2 54 0.0012 30.5 6.5 59 150-217 100-162 (476)
26 PHA02708 hypothetical protein; 49.1 18 0.0004 28.1 2.8 23 5-27 2-24 (148)
27 PF13759 2OG-FeII_Oxy_5: Putat 43.9 22 0.00048 25.7 2.5 38 172-220 5-42 (101)
28 PF02529 PetG: Cytochrome B6-F 36.5 44 0.00096 20.1 2.5 23 7-29 7-29 (37)
29 PF06624 RAMP4: Ribosome assoc 32.0 24 0.00051 24.0 0.9 22 5-29 36-57 (63)
30 smart00806 AIP3 Actin interact 31.1 35 0.00076 31.8 2.1 24 25-48 20-44 (426)
31 PF06364 DUF1068: Protein of u 30.1 70 0.0015 26.0 3.4 32 7-38 8-39 (176)
32 PF06522 B12D: NADH-ubiquinone 29.3 44 0.00095 23.1 2.0 17 10-26 6-22 (73)
33 CHL00008 petG cytochrome b6/f 28.7 98 0.0021 18.6 3.0 24 6-29 6-29 (37)
34 PRK09553 tauD taurine dioxygen 27.9 39 0.00085 29.2 1.9 33 181-219 95-127 (277)
35 KOG3491 Predicted membrane pro 27.7 86 0.0019 21.0 3.0 23 4-29 35-57 (65)
36 COG3870 Uncharacterized protei 27.5 23 0.0005 26.4 0.3 16 204-219 85-100 (109)
37 PRK00665 petG cytochrome b6-f 27.4 1.1E+02 0.0024 18.4 3.1 24 6-29 6-29 (37)
38 PHA02577 2 DNA end protector p 26.6 44 0.00095 27.3 1.7 66 148-223 21-86 (181)
39 cd08788 CARD_NOD2_2_CARD15 Cas 25.5 30 0.00064 24.7 0.5 16 91-106 24-39 (81)
40 PF01448 ELM2: ELM2 domain; I 23.5 99 0.0022 19.7 2.8 26 80-110 28-53 (55)
41 PHA02723 hypothetical protein; 23.3 78 0.0017 21.5 2.2 42 23-66 24-70 (77)
42 TIGR02466 conserved hypothetic 22.8 1.3E+02 0.0028 25.0 4.0 40 169-219 98-137 (201)
43 KOG4176 Uncharacterized conser 21.5 4.1E+02 0.0089 23.9 7.1 39 147-186 191-229 (323)
44 PF06153 DUF970: Protein of un 20.8 23 0.0005 26.7 -0.8 12 207-218 88-99 (109)
No 1
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-42 Score=302.20 Aligned_cols=172 Identities=47% Similarity=0.723 Sum_probs=151.6
Q ss_pred hccccccccCCC-----CcEEEcCCCCCceeeecCcceEEeecCCcEEEEcCCCCHHHHHHHHHHhcCCCccceee-eCC
Q 027393 48 RRQKNGYLQLPR-----GVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVV-DTK 121 (224)
Q Consensus 48 ~~~Crg~~~~~~-----~l~c~y~~~~~p~lrlaplK~E~Ls~~P~I~~~~dfLs~~Ec~~Li~~a~~~l~~s~v~-~~~ 121 (224)
...|+|.+...+ .++|++... ||++++|+|+|+|||+|+|++||||||++||++|+++++++++++++. +.+
T Consensus 55 ~~~c~g~~~~~~~~~~~~~~~~~~~~--~~~~~ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~ 132 (289)
T KOG1591|consen 55 EQGCRGELPPLTKLTLRRLSCRNRAG--PFLRLAPVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKG 132 (289)
T ss_pred hhhccCccCccchhHhhhhhcccccC--cceeecchhhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCC
Confidence 448999987654 455555533 999999999999999999999999999999999999999999999994 555
Q ss_pred CCCcccccccccceeeeCCCCcchHHHHHHHHHHHHhcCCCccccceeeeEEcCCCCCccccccCCCC---c-ccCCCCC
Q 027393 122 TGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSD---T-FNLKRGG 197 (224)
Q Consensus 122 ~g~~~~s~~R~S~~~~l~~~~~~~~v~~~i~~Ri~~~~gl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~---~-~~~~~~~ 197 (224)
+|....+.+|+|+++|+..+ .++++++|++||++++++|.+++|.|||+||++||||.+|+|++.+ . .+....|
T Consensus 133 ~~~~~~~~~R~S~~t~l~~~--~~~~~~~i~~ri~~~T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g 210 (289)
T KOG1591|consen 133 TGHSTTSAVRTSSGTFLPDG--ASPVVSRIEQRIADLTGLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGG 210 (289)
T ss_pred cccccceeeEecceeEecCC--CCHHHHHHHHHHHhccCCCcccCccceEEEecCCccccccccccccccchhhhhcccC
Confidence 56666677899999999984 4899999999999999999999999999999999999999999953 1 2345689
Q ss_pred ceEEEEEEeccCCCCCceeecCCCCC
Q 027393 198 QRIATMLMYLSDNVEGGETYFPMVMT 223 (224)
Q Consensus 198 ~R~~T~l~YLNDv~~GGeT~Fp~l~~ 223 (224)
+|++|+|+||+||++||+|+||.++.
T Consensus 211 ~RiaT~l~yls~v~~GG~TvFP~~~~ 236 (289)
T KOG1591|consen 211 NRIATVLMYLSDVEQGGETVFPNLGM 236 (289)
T ss_pred CcceeEEEEecccCCCCcccCCCCCC
Confidence 99999999999999999999999986
No 2
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=100.00 E-value=1.6e-39 Score=285.86 Aligned_cols=146 Identities=49% Similarity=0.802 Sum_probs=134.5
Q ss_pred eecCcceEEeecCCcEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCCcccccccccceeeeCCCCcchHHHHHHHH
Q 027393 74 RLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEK 153 (224)
Q Consensus 74 rlaplK~E~Ls~~P~I~~~~dfLs~~Ec~~Li~~a~~~l~~s~v~~~~~g~~~~s~~R~S~~~~l~~~~~~~~v~~~i~~ 153 (224)
.+.|.|+|+||++|+|++||||||++||++||+++++++++|++++..+|+...+++|+|+++|+...+ ++++++|++
T Consensus 41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~--dpvv~~I~~ 118 (310)
T PLN00052 41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQ--DPVVSRIEE 118 (310)
T ss_pred CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCC--CHHHHHHHH
Confidence 358899999999999999999999999999999999999999998877777778899999999998754 799999999
Q ss_pred HHHHhcCCCccccceeeeEEcCCCCCccccccCCCCcccCCCCCceEEEEEEeccCCCCCceeecCCC
Q 027393 154 RISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFPMV 221 (224)
Q Consensus 154 Ri~~~~gl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~R~~T~l~YLNDv~~GGeT~Fp~l 221 (224)
||++++++|.++.|.+||+||++||+|++|+|++.+..+...+++|++|+|+|||||++||||+||++
T Consensus 119 Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~ 186 (310)
T PLN00052 119 RIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNA 186 (310)
T ss_pred HHHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCc
Confidence 99999999999999999999999999999999997644334578999999999999999999999987
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.94 E-value=3.3e-26 Score=186.77 Aligned_cols=132 Identities=36% Similarity=0.492 Sum_probs=114.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCCcccccccccceeeeCCCCcchHHHHHHHHHHHHhcCCC---c
Q 027393 87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVP---V 163 (224)
Q Consensus 87 P~I~~~~dfLs~~Ec~~Li~~a~~~l~~s~v~~~~~g~~~~s~~R~S~~~~l~~~~~~~~v~~~i~~Ri~~~~gl~---~ 163 (224)
|.|+++|||||++||+.|++.+++...++.+..+..+....+++|+|...|+...+ .++++++|.+||+++++++ .
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~-~~~~~~~l~~~i~~~~~~~~~~~ 79 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLK-GDLVIERIRQRLADFLGLLRGLP 79 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCC-CCHHHHHHHHHHHHHHCCCchhh
Confidence 78999999999999999999999888777776554332256789999999998753 3689999999999999998 7
Q ss_pred cccceeeeEEcCCCCCccccccCCCCcccCCCCCceEEEEEEeccCCCCCceeecCCCCC
Q 027393 164 ENGELIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFPMVMT 223 (224)
Q Consensus 164 ~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~R~~T~l~YLNDv~~GGeT~Fp~l~~ 223 (224)
...|.+|+++|++|++|.+|+|...... .++|.+|+++||||+++||+|.||..+.
T Consensus 80 ~~~~~~~~~~Y~~g~~~~~H~D~~~~~~----~~~r~~T~~~yLn~~~~GG~~~f~~~~~ 135 (178)
T smart00702 80 LSAEDAQVARYGPGGHYGPHVDNFEDDE----NGDRIATFLLYLNDVEEGGELVFPGLGL 135 (178)
T ss_pred ccCcceEEEEECCCCcccCcCCCCCCCC----CCCeEEEEEEEeccCCcCceEEecCCCC
Confidence 8899999999999999999999986532 2689999999999999999999998763
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.64 E-value=1.5e-15 Score=128.57 Aligned_cols=123 Identities=20% Similarity=0.212 Sum_probs=85.3
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCC-CccceeeeCCCCCcccccccccceeeeCCCCcchHHHHHHHHHHHHhc--------
Q 027393 89 ILVLHNFLSMEECDYLRAIARPH-LQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFS-------- 159 (224)
Q Consensus 89 I~~~~dfLs~~Ec~~Li~~a~~~-l~~s~v~~~~~g~~~~s~~R~S~~~~l~~~~~~~~v~~~i~~Ri~~~~-------- 159 (224)
|++++|+||++||+++++..+.. +....+. .| ...+++|++.++- . ++++.+.|.++|....
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~t---aG-~~~~~vKnN~ql~--~---d~~~a~~l~~~i~~~L~~~~l~~s 72 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVT---AG-AQAAQVKNNQQLP--E---DSPLARELGNLILDALTRNPLFFS 72 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCcC---cC-ccchhcccccccC--C---CCHHHHHHHHHHHHHHhcCchhhh
Confidence 67899999999999999988753 2222111 12 2356788877753 2 2467777777776543
Q ss_pred -CCCccccceeeeEEcCCCCCccccccCCCCccc-CCCCCceEEEEEEeccCCC--CCceeecCCC
Q 027393 160 -QVPVENGELIQVLRYEKDQYYKPHHDYFSDTFN-LKRGGQRIATMLMYLSDNV--EGGETYFPMV 221 (224)
Q Consensus 160 -gl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~-~~~~~~R~~T~l~YLNDv~--~GGeT~Fp~l 221 (224)
.+|... .++++.||.+|++|.+|.|....... .....+|.+|+++||||++ +||||+|+..
T Consensus 73 a~lp~~i-~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~ 137 (226)
T PRK05467 73 AALPRKI-HPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDT 137 (226)
T ss_pred hcccccc-ccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecC
Confidence 233333 57899999999999999999755321 0112256899999999875 8999999853
No 5
>PHA02813 hypothetical protein; Provisional
Probab=99.33 E-value=5.6e-12 Score=111.46 Aligned_cols=115 Identities=18% Similarity=0.297 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCCCccceeeeCCCC-CcccccccccceeeeCCCCcchHHHHHHHHHHHH-hcCCC----ccccceeeeEE
Q 027393 100 ECDYLRAIARPHLQVSTVVDTKTG-KGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISV-FSQVP----VENGELIQVLR 173 (224)
Q Consensus 100 Ec~~Li~~a~~~l~~s~v~~~~~g-~~~~s~~R~S~~~~l~~~~~~~~v~~~i~~Ri~~-~~gl~----~~~~E~lqv~r 173 (224)
+.-.+++...-.+..|.+.+..+| +...+++|+++++.++.. +.+.++|++-+.+ +.|.+ ++.+|.++++|
T Consensus 24 ~l~~~i~~~d~~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~---~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyr 100 (354)
T PHA02813 24 IIMDMIKYKDIIWEESKVFDHEKGGEVINTNERQCKQYIIRGL---DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIK 100 (354)
T ss_pred HHHHHHhccccCccccceeccccCceEEccccccceEEEEcCH---HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEE
Confidence 334444434445677888876555 456788999999988742 3444444443332 33433 46789999999
Q ss_pred cCCCCCccccccCCCCcccCCCCCceEEEEEEeccCCCCCceeecCCC
Q 027393 174 YEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFPMV 221 (224)
Q Consensus 174 Y~~Gg~y~~H~D~~~~~~~~~~~~~R~~T~l~YLNDv~~GGeT~Fp~l 221 (224)
|.+|++|.+|.|+..... ...+..|+|+|||++++||+|.|..-
T Consensus 101 Y~kGq~F~~H~Dg~~~r~----k~~s~~tLLLYLN~~~~GGeT~f~~~ 144 (354)
T PHA02813 101 YEKGDFFNNHRDFIHFKS----KNCYCYHLVLYLNNTSKGGNTNIHIK 144 (354)
T ss_pred ECCCcccCcccCCceeec----CCceEEEEEEEEeccCCCCceEEEcC
Confidence 999999999999865421 13389999999999999999999754
No 6
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.24 E-value=2e-11 Score=109.50 Aligned_cols=100 Identities=20% Similarity=0.321 Sum_probs=77.5
Q ss_pred CccceeeeCCCCC-cccccccccceeeeCCCCcchHHHHHHHHHHHHh-----cCC--CccccceeeeEEcCCCCCcccc
Q 027393 112 LQVSTVVDTKTGK-GIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVF-----SQV--PVENGELIQVLRYEKDQYYKPH 183 (224)
Q Consensus 112 l~~s~v~~~~~g~-~~~s~~R~S~~~~l~~~~~~~~v~~~i~~Ri~~~-----~gl--~~~~~E~lqv~rY~~Gg~y~~H 183 (224)
+..|.+.+..+|. ......|.|++..+.. .+.+.|.+|++.+ .+. .++.+|.++++||.+|++|++|
T Consensus 45 ~~~s~i~~~~~g~e~~~~~~~ksKqii~e~-----~La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F~~H 119 (418)
T PHA02869 45 CEDSKIFFPEKRTELLSIKDRKSKQIVFEN-----SLNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFARH 119 (418)
T ss_pred cccceeeccccCceeEeeccccceeEEech-----HHHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCccccc
Confidence 5678888876663 3456779999988864 4556666666643 343 4577999999999999999999
Q ss_pred ccCCCCcccCCCCCceEEEEEEeccCCCCCceeecCC
Q 027393 184 HDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFPM 220 (224)
Q Consensus 184 ~D~~~~~~~~~~~~~R~~T~l~YLNDv~~GGeT~Fp~ 220 (224)
.|+.... .......|+|+|||++++||+|.|+.
T Consensus 120 ~Dg~~~r----s~e~s~~tLLLYLNd~~~GGET~f~~ 152 (418)
T PHA02869 120 RDFSTVF----SKNIICVHLLLYLEQPETGGETVIYI 152 (418)
T ss_pred ccCceec----CCCEEEEEEEEEEeccCCCCceEEEe
Confidence 9986542 24556899999999999999999975
No 7
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=98.68 E-value=3.2e-08 Score=68.97 Aligned_cols=54 Identities=26% Similarity=0.466 Sum_probs=44.8
Q ss_pred ccceeeeEEcCCCCCccccccCCCCcccCCCCCceEEEEEEecc----CCCCCceeecCCCC
Q 027393 165 NGELIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLS----DNVEGGETYFPMVM 222 (224)
Q Consensus 165 ~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~R~~T~l~YLN----Dv~~GGeT~Fp~l~ 222 (224)
..+.++..+|..|++|++|.|...... +..|.+|+||||| +...||++.|+.-+
T Consensus 9 ~~~~~~~~~~~~g~~~~~H~D~~~~~~----~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~~ 66 (70)
T PF13661_consen 9 FRPNFRFYRYRRGDFFGWHVDADPSSS----GKRRFLTLLLYLNEDWDEDFGGGELFFDDDG 66 (70)
T ss_pred cCcceeEEEcCCCCEeeeeEcCCcccc----ccceeEEEEEEecccccCccCCcEEEEeCCC
Confidence 356789999999999999999876532 5789999999999 56789999997643
No 8
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=98.58 E-value=3.9e-08 Score=72.39 Aligned_cols=46 Identities=37% Similarity=0.589 Sum_probs=36.6
Q ss_pred eeeEEcCCCCCccccccCCCCcccCCCCCceEEEEEEeccCCC---CCceeecCCC
Q 027393 169 IQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNV---EGGETYFPMV 221 (224)
Q Consensus 169 lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~R~~T~l~YLNDv~---~GGeT~Fp~l 221 (224)
.|+.+|.+|++++||.|... ...+.+|+++|||++. +||+|+|..-
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~-------~~~~~~t~llyL~~~~~~~~GG~l~~~~~ 49 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSY-------DPHRRVTLLLYLNDPEWEFEGGELEFYPS 49 (100)
T ss_dssp -EEEEEETTEEEEEEESSSC-------CCSEEEEEEEESS-CS-HCEE--EEETTT
T ss_pred CEEEEECcCCEEeeeECCCC-------CCcceEEEEEEECCCCcccCCCEEEEecc
Confidence 37899999999999999743 3578999999999887 9999999863
No 9
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=97.71 E-value=0.00019 Score=63.87 Aligned_cols=89 Identities=18% Similarity=0.316 Sum_probs=65.6
Q ss_pred ccccccccceeeeCCCCcchHHHHHHHHHHHHhc-C-C-CccccceeeeEEcCCCCCccccccCCCCcccCCCCCceEEE
Q 027393 126 IKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFS-Q-V-PVENGELIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIAT 202 (224)
Q Consensus 126 ~~s~~R~S~~~~l~~~~~~~~v~~~i~~Ri~~~~-g-l-~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~R~~T 202 (224)
.+...|.|++..++.. ..+++.++|.+.+.+-. . + .+.-.+.+.+++|+.|++|+.|.|..... .....-.+
T Consensus 36 ~d~~~r~sk~iv~~~~-~~~dI~~~ik~~l~~~lk~~v~~V~V~n~iTfikY~kGd~f~~~~d~~~~~----~~n~~~y~ 110 (339)
T PF03336_consen 36 FDHEFRKSKQIVIEDS-LNDDIFSKIKNLLYDELKNVVEDVIVDNTITFIKYEKGDFFDNHRDFIKRD----SKNCLEYH 110 (339)
T ss_pred ccccccccceEEEecc-chHHHHHHHHHHHHHHhhcceeEEEEcceEEEEEEccCcchhhhcccceec----cCCceEEE
Confidence 3445799998777642 34677777777765432 2 1 23456789999999999999999943321 24567899
Q ss_pred EEEeccCCCCCceeecC
Q 027393 203 MLMYLSDNVEGGETYFP 219 (224)
Q Consensus 203 ~l~YLNDv~~GGeT~Fp 219 (224)
+++|||.+.+||+|.+.
T Consensus 111 LvLyL~~~~~GGktkiy 127 (339)
T PF03336_consen 111 LVLYLNNPENGGKTKIY 127 (339)
T ss_pred EEEEEeccCCCceEEEE
Confidence 99999999999999864
No 10
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=97.59 E-value=0.0003 Score=57.71 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=70.1
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCC-CcccccccccceeeeCCCCcchHHHHHHHHHHHHh-------cC
Q 027393 89 ILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTG-KGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVF-------SQ 160 (224)
Q Consensus 89 I~~~~dfLs~~Ec~~Li~~a~~~l~~s~v~~~~~g-~~~~s~~R~S~~~~l~~~~~~~~v~~~i~~Ri~~~-------~g 160 (224)
..-+..+||+++|.++.+..+.. .-.++... +..-.++|++.+. +.+ +++.+.+.+-|.+. .+
T Consensus 4 ~lhIp~VLs~a~va~iRa~l~~A----~w~dGrat~g~q~a~vk~n~ql--p~~---s~l~~~vg~~il~al~~~plff~ 74 (229)
T COG3128 4 MLHIPEVLSEAQVARIRAALEQA----EWVDGRATQGPQGAQVKNNLQL--PQD---SALARELGNEILQALTAHPLFFA 74 (229)
T ss_pred EEechhhCCHHHHHHHHHHHhhc----cccccccccCcchhhhhccccC--Ccc---cHHHHHHHHHHHHHHHhchhHHH
Confidence 45678999999999998876531 11111111 1122344555442 221 34444444444322 12
Q ss_pred --CCccccceeeeEEcCCCCCccccccCCCCcccCCCCCce---EEEEEEeccCCC--CCceeec
Q 027393 161 --VPVENGELIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQR---IATMLMYLSDNV--EGGETYF 218 (224)
Q Consensus 161 --l~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~R---~~T~l~YLNDv~--~GGeT~F 218 (224)
+|. .-++.++.+|..|++|.+|.|+..... .+..+.| ..++-++|+|++ +|||.+.
T Consensus 75 aALp~-t~~~P~Fn~Y~eg~~f~fHvDgavr~~-hp~~~~~lrtdls~tlfl~DPedYdGGeLVv 137 (229)
T COG3128 75 AALPR-TCLPPLFNRYQEGDFFGFHVDGAVRSI-HPGSGFRLRTDLSCTLFLSDPEDYDGGELVV 137 (229)
T ss_pred hhccc-ccCCchhhhccCCCcccccccCccccc-CCCCCceeEeeeeeeeecCCccccCCceEEE
Confidence 332 356789999999999999999876541 1123334 345557899986 6999875
No 11
>PHA02866 Hypothetical protein; Provisional
Probab=97.30 E-value=0.00062 Score=59.54 Aligned_cols=96 Identities=17% Similarity=0.147 Sum_probs=67.1
Q ss_pred CCccceeeeCCCC-CcccccccccceeeeCCCCcchHHHHHHHHHHHHhc--CCCccccceeeeEEcCCCCCccccccCC
Q 027393 111 HLQVSTVVDTKTG-KGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFS--QVPVENGELIQVLRYEKDQYYKPHHDYF 187 (224)
Q Consensus 111 ~l~~s~v~~~~~g-~~~~s~~R~S~~~~l~~~~~~~~v~~~i~~Ri~~~~--gl~~~~~E~lqv~rY~~Gg~y~~H~D~~ 187 (224)
.+++|.+.+...| .......|.|++. +++..++. |+..+. .-+.-..+.+.+++|..|.+|.-|.|..
T Consensus 31 ~w~~s~i~~~~~~i~~~~~~~~k~k~~--------~~v~~~v~-~~~~~~~~~~dv~v~~~~t~vk~~kg~~fdn~~~~~ 101 (333)
T PHA02866 31 SWEDSDILRHRQFIPCEILVLEKSERT--------KQVFGAVK-RVLASSLTDYDVYVCEHLTIVKCFKGVGFDNRFSIL 101 (333)
T ss_pred ccchhhhhhhccCCceeeeehhhhhhh--------HHHHHHHH-HHHhccCCCccEEEeeeEEEEEEecccccccceeEE
Confidence 3777887765545 2334556766654 45666655 444332 2233456779999999999999999876
Q ss_pred CCcccCCCCCceEEEEEEeccCCCCCceeecC
Q 027393 188 SDTFNLKRGGQRIATMLMYLSDNVEGGETYFP 219 (224)
Q Consensus 188 ~~~~~~~~~~~R~~T~l~YLNDv~~GGeT~Fp 219 (224)
... ....+-.++++||+....||+|.++
T Consensus 102 ~~~----~~~~~~Y~LvLyL~~p~~GGkt~iy 129 (333)
T PHA02866 102 TED----RHRGREYTLVLHLSSPKNGGKTDVC 129 (333)
T ss_pred Eec----cCCceEEEEEEEEeccccCCceEEE
Confidence 532 2346789999999999999999987
No 12
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=96.07 E-value=0.055 Score=47.22 Aligned_cols=131 Identities=16% Similarity=0.104 Sum_probs=64.2
Q ss_pred EeecCCcEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCC--cccccccccceeeeCCCCcchHHHH------HHHH
Q 027393 82 VISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGK--GIKSNVRTSSGMFLSPEEKKYPMIQ------AIEK 153 (224)
Q Consensus 82 ~Ls~~P~I~~~~dfLs~~Ec~~Li~~a~~~l~~s~v~~~~~g~--~~~s~~R~S~~~~l~~~~~~~~v~~------~i~~ 153 (224)
....+-| +++.++|+++||+.|.+..+..+..........+. ......|. . +... ..++.++ +|..
T Consensus 24 ~f~~dGy-vvl~~vls~eev~~lr~~i~~~~~~~~~~~~~~~~~~~~~~~~r~---~-~~~~-~~~~~~~~l~~~p~l~~ 97 (277)
T TIGR02408 24 SYERDGF-LLLENLFSDDEVAALLAEVERMTRDPAIVRDEEAITEPGSNAVRS---I-FEVH-VLSPILARLVRDPRVAN 97 (277)
T ss_pred HHHHCCE-EECcccCCHHHHHHHHHHHHHHHhcccccCCCcceecCCCCceEE---E-eccc-ccCHHHHHHHcChHHHH
Confidence 3445666 58999999999999999876543221110000000 00011221 1 1110 0123333 2334
Q ss_pred HHHHhcCCCccccceeeeEEcC-CCCCccccccCCCCcccCCCCCceEEEEEEeccCCCC-Cceeec
Q 027393 154 RISVFSQVPVENGELIQVLRYE-KDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNVE-GGETYF 218 (224)
Q Consensus 154 Ri~~~~gl~~~~~E~lqv~rY~-~Gg~y~~H~D~~~~~~~~~~~~~R~~T~l~YLNDv~~-GGeT~F 218 (224)
.++++.|-+.......-+.+.+ .|+.+.||.|...-.........+..|+.++|.|+.. -|.+.|
T Consensus 98 ~~~~LlG~~~~l~~~~l~~kp~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~v 164 (277)
T TIGR02408 98 AARQILGSDVYVHQSRINMKPGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLML 164 (277)
T ss_pred HHHHHcCCCeEEEeeeeeecCCCCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEE
Confidence 4445566443222111123344 2568889999743211000112367999999999854 366654
No 13
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.04 Score=47.54 Aligned_cols=49 Identities=29% Similarity=0.352 Sum_probs=41.8
Q ss_pred eeeeEEcCCCCCccccccCCCCcccCCCCCceEEEEEEeccC---CCCCcee-ecCCCC
Q 027393 168 LIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSD---NVEGGET-YFPMVM 222 (224)
Q Consensus 168 ~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~R~~T~l~YLND---v~~GGeT-~Fp~l~ 222 (224)
..|+..|.+|.||..|-|.+.+ ...|.+|.++|+|. .+-||+. .|+.+.
T Consensus 137 e~~~~~y~~G~~l~~H~D~~~~------~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~ 189 (252)
T COG3751 137 EGQITVYNPGCFLLKHDDNGRD------KDIRLATYVYYLTREWKPEYGGELRLFHSLQ 189 (252)
T ss_pred eeeeeEecCCceeEeecccCCC------ccceEEEEEeccCCCCCcCCCCceeeccccc
Confidence 6899999999999999998864 46799999999996 4679999 777653
No 14
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=94.43 E-value=0.051 Score=43.70 Aligned_cols=120 Identities=17% Similarity=0.035 Sum_probs=58.4
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCC----Cc---cceeeeCCCCCcccccccccceeeeCCCCc-chHHH-H-HHHHHHHHh
Q 027393 89 ILVLHNFLSMEECDYLRAIARPH----LQ---VSTVVDTKTGKGIKSNVRTSSGMFLSPEEK-KYPMI-Q-AIEKRISVF 158 (224)
Q Consensus 89 I~~~~dfLs~~Ec~~Li~~a~~~----l~---~s~v~~~~~g~~~~s~~R~S~~~~l~~~~~-~~~v~-~-~i~~Ri~~~ 158 (224)
.+++.|+|+++||+.|.+..... .. ....... +. .......++..... ...+. . .+...++++
T Consensus 6 yvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (211)
T PF05721_consen 6 YVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFFD--ES-----FFGDYTEQLAKSPNFYDLFLHPPRILDLVRAL 78 (211)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEES--TS-----CCCTCCCCGCCCHHHHHHHHTHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHHHHHhhhhccccccccccc--cc-----cccccccccccchhhHHHHhhHHHHHHHHHHh
Confidence 46899999999999998877642 10 0111100 00 00000111111000 01111 1 455566666
Q ss_pred cCCCcc----ccceee-eEEcC-CCCCc-cccccCCCCcccCCCCCceEEEEEEeccCC-CCCceeec
Q 027393 159 SQVPVE----NGELIQ-VLRYE-KDQYY-KPHHDYFSDTFNLKRGGQRIATMLMYLSDN-VEGGETYF 218 (224)
Q Consensus 159 ~gl~~~----~~E~lq-v~rY~-~Gg~y-~~H~D~~~~~~~~~~~~~R~~T~l~YLNDv-~~GGeT~F 218 (224)
.|-+.. ....++ +.+-. +|... .||.|...... ....+.+|+.++|.|+ .+.|.+.+
T Consensus 79 ~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~---~~~~~~~~~wi~L~d~~~~~G~~~v 143 (211)
T PF05721_consen 79 LGSDVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHT---DPPENQLTVWIALDDITPENGPLEV 143 (211)
T ss_dssp HTSSEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTE---ESSSCEEEEEEESS-BBTTCTCEEE
T ss_pred hCCcchhhhhhHHHHHhhhhccccCCCCCCCCCCCccccc---CCccceEEEEEeeccCCcccCceEe
Confidence 665422 122221 23322 46665 99999765431 1157899999999998 34455543
No 15
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=93.60 E-value=0.048 Score=39.48 Aligned_cols=41 Identities=22% Similarity=0.185 Sum_probs=30.0
Q ss_pred ceeeeEEcC---CCCCccccccCCCCcccCCCCCceEEEEEEeccCCCCCceeecCCC
Q 027393 167 ELIQVLRYE---KDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFPMV 221 (224)
Q Consensus 167 E~lqv~rY~---~Gg~y~~H~D~~~~~~~~~~~~~R~~T~l~YLNDv~~GGeT~Fp~l 221 (224)
+.+++.+|. .+..+.+|.|.. ++.+|++++ .++|++.|...
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~----------~~~~Til~~----~~~~gL~~~~~ 45 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDE----------DGLLTILFQ----DEVGGLQVRDD 45 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES------------SSEEEEEE----TSTS-EEEEET
T ss_pred CEEEEEECCCcccCCceeCCCcCC----------CCeEEEEec----ccchheecccc
Confidence 568999999 899999999963 468899998 66677777643
No 16
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=91.13 E-value=2.1 Score=36.68 Aligned_cols=121 Identities=21% Similarity=0.269 Sum_probs=68.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHhcC-----CCccceeeeCCCCCcccccccccceeeeCCCCcch-----------HHHHHH
Q 027393 88 RILVLHNFLSMEECDYLRAIARP-----HLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKY-----------PMIQAI 151 (224)
Q Consensus 88 ~I~~~~dfLs~~Ec~~Li~~a~~-----~l~~s~v~~~~~g~~~~s~~R~S~~~~l~~~~~~~-----------~v~~~i 151 (224)
.+.+++|||-.+-=..+.+..+. .+.+..++.+. ....+++|..+..|+.-.+..- .++...
T Consensus 54 g~~vvd~flg~~~g~~v~~ev~~l~~~G~f~dgql~~~~--~~~~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~~i~h~ 131 (280)
T KOG3710|consen 54 GICVVDNFLGSETGKFILKEVEALYETGAFRDGQLVSPD--AFHSKDIRGDKITWVGGNEPGCETIMLLPSPIDSVILHC 131 (280)
T ss_pred ceEEEechhhHHHHHHHHHHHHHHHhccCccCceeccCc--CCcchhhccCCceEecCCCCCccceeeecccchhhhhhh
Confidence 47889999987765554444332 23322222221 1223578999999998654211 111111
Q ss_pred HHHHHHhcCCCccccceeeeEEcC-CCCCccccccCCCCcccCCCCCceEEEEEEecc---CCC-CCce-eecCCC
Q 027393 152 EKRISVFSQVPVENGELIQVLRYE-KDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLS---DNV-EGGE-TYFPMV 221 (224)
Q Consensus 152 ~~Ri~~~~gl~~~~~E~lqv~rY~-~Gg~y~~H~D~~~~~~~~~~~~~R~~T~l~YLN---Dv~-~GGe-T~Fp~l 221 (224)
..|+-. -.-.-..--|..|. .|-.|-.|.|.- .+..|-.|++.||| |+. .||- -.||.-
T Consensus 132 ~~r~~~----~~~gRtkAMVAcYPGNGtgYVrHVDNP-------~gDGRcITcIYYlNqNWD~kv~Gg~Lri~pe~ 196 (280)
T KOG3710|consen 132 NGRLGS----YIIGRTKAMVACYPGNGTGYVRHVDNP-------HGDGRCITCIYYLNQNWDVKVHGGILRIFPEG 196 (280)
T ss_pred cccccc----ccccceeEEEEEecCCCceeeEeccCC-------CCCceEEEEEEEcccCcceeeccceeEeccCC
Confidence 111111 11112345678886 567999999964 34579999999999 443 3443 466654
No 17
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.93 E-value=1.7 Score=35.73 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=55.7
Q ss_pred EeecCCcEEEEcCCCCHHHHHHHHHHhcCCCccc-eee-eC---CCCCcccccccccceeeeCCCCcchHHHHHHHHHHH
Q 027393 82 VISWSPRILVLHNFLSMEECDYLRAIARPHLQVS-TVV-DT---KTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRIS 156 (224)
Q Consensus 82 ~Ls~~P~I~~~~dfLs~~Ec~~Li~~a~~~l~~s-~v~-~~---~~g~~~~s~~R~S~~~~l~~~~~~~~v~~~i~~Ri~ 156 (224)
++...|.+++++||+++||-..+++..+..-++- ++. +. +-|..+. ....+.+ + --+..+++..+|.
T Consensus 7 ~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqNyGGvvh------~~glipe-e-lP~wLq~~v~kin 78 (224)
T KOG3200|consen 7 IVKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQNYGGVVH------KTGLIPE-E-LPPWLQYYVDKIN 78 (224)
T ss_pred EecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhhcCCccc------cCCcCcc-c-cCHHHHHHHHHhh
Confidence 4557888999999999999999988776421110 000 00 0010000 0111221 1 1355566666666
Q ss_pred HhcCCCccccceeeeEEcCCCCCccccccCC
Q 027393 157 VFSQVPVENGELIQVLRYEKDQYYKPHHDYF 187 (224)
Q Consensus 157 ~~~gl~~~~~E~lqv~rY~~Gg~y~~H~D~~ 187 (224)
. .|+-.+.....-|..|.+||--.||.|+-
T Consensus 79 n-lglF~s~~NHVLVNeY~pgqGImPHtDGP 108 (224)
T KOG3200|consen 79 N-LGLFKSPANHVLVNEYLPGQGIMPHTDGP 108 (224)
T ss_pred c-ccccCCCcceeEeecccCCCCcCcCCCCC
Confidence 4 33322334456677899999999999984
No 18
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=90.34 E-value=1.4 Score=35.64 Aligned_cols=41 Identities=15% Similarity=0.098 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcC-CCccccceeeeEEcCCCCCccccccCC
Q 027393 147 MIQAIEKRISVFSQ-VPVENGELIQVLRYEKDQYYKPHHDYF 187 (224)
Q Consensus 147 v~~~i~~Ri~~~~g-l~~~~~E~lqv~rY~~Gg~y~~H~D~~ 187 (224)
.+..+.+++....+ .+........|..|..|+.-.+|.|..
T Consensus 76 ~l~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~ 117 (194)
T PF13532_consen 76 WLSRLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDE 117 (194)
T ss_dssp HHHHHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---T
T ss_pred HHHHHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcc
Confidence 34455555554443 222334567788899999999999986
No 19
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=89.01 E-value=5.7 Score=34.94 Aligned_cols=125 Identities=13% Similarity=-0.043 Sum_probs=62.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCCcccccccccceeeeCCCCcchHHH------HHHHHHHHHh
Q 027393 85 WSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMI------QAIEKRISVF 158 (224)
Q Consensus 85 ~~P~I~~~~dfLs~~Ec~~Li~~a~~~l~~s~v~~~~~g~~~~s~~R~S~~~~l~~~~~~~~v~------~~i~~Ri~~~ 158 (224)
.+-| +++.++||++|++.|.+.++..+........... ....|.+ |.... .++.+ .+|...++++
T Consensus 13 e~Gy-v~~~~~~s~eei~~L~~~~~~~l~~~~~~~~~~~---~~~~~~~---~~~~~--~~~~~~~l~~~~~l~~~~~~l 83 (288)
T TIGR01762 13 KNGF-IGPFTLYSPEEMKETWKRIRLRLLDRSAAPYQDL---GGTNIAN---YDRHL--DDDFLASHICRPEICHRVESI 83 (288)
T ss_pred hCCE-EeCcCCCCHHHHHHHHHHHHHHhhccccccccCC---CCceeEe---eeecc--cCHHHHHHhcCHHHHHHHHHH
Confidence 4555 5799999999999999877543321110000000 0111111 11111 12222 2333445556
Q ss_pred cCCCccccceeeeEEcCCCCCccccccCCCCcccC------C--CCCceEEEEEEeccCCC-CCceeec
Q 027393 159 SQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNL------K--RGGQRIATMLMYLSDNV-EGGETYF 218 (224)
Q Consensus 159 ~gl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~------~--~~~~R~~T~l~YLNDv~-~GGeT~F 218 (224)
.|-++...-.--+.+...++-+.||.|........ + ....+.+|+.+-|.|+. +-|.+.|
T Consensus 84 lG~~v~l~~~~~~~K~pg~~~~~wHQD~~y~~~~~~~~~~~p~~~~~~~~vt~wiaLdd~t~eNG~L~v 152 (288)
T TIGR01762 84 LGPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQLVWPENEEFGGTITVWTAFTDATIENGCMQF 152 (288)
T ss_pred hCCcEEeeeceeeeeCCCCCCCCCCccCcccccCCcccccccccCCCCCeEEEEEEcccCCcccCCEEE
Confidence 66443322222344554445589999964321100 0 11247899999999974 4444443
No 20
>PHA02923 hypothetical protein; Provisional
Probab=83.84 E-value=5.3 Score=35.36 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHhcCC--CccccceeeeEEcCCCCCccccccCCCCcccCCCCCceEEEEEEeccCCCCCceeecCCCC
Q 027393 145 YPMIQAIEKRISVFSQV--PVENGELIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFPMVM 222 (224)
Q Consensus 145 ~~v~~~i~~Ri~~~~gl--~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~R~~T~l~YLNDv~~GGeT~Fp~l~ 222 (224)
+++.++|++.+-+-... .+.-...+.+.+|++|.+ .|. ...+.-..+++||+....||+|.++.-+
T Consensus 43 ~di~~~ir~liy~elk~v~~V~V~n~iT~ikYekgd~--~~l----------~~~~~~y~LvLyL~~p~~GGt~i~~~~~ 110 (315)
T PHA02923 43 IDISECIREILYKQFKNVRNIEVSSTISFIKYNPFND--TTL----------TDDNMGYYLVIYLNRPKSGKTLIYPTPE 110 (315)
T ss_pred hHHHHHHHHHHHHhccCcceEEEeceEEEEEEcCCCc--cee----------ecCceEEEEEEEEeccCCCCeEEEecCC
Confidence 46777777766543221 223344689999999985 111 1234788999999999999999987654
No 21
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=75.71 E-value=3.8 Score=35.23 Aligned_cols=94 Identities=21% Similarity=0.304 Sum_probs=52.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhcCCC-ccceeeeC--CCCCcc---cccccccceeeeCCCCcchHHHHHHHHHHHHhcC
Q 027393 87 PRILVLHNFLSMEECDYLRAIARPHL-QVSTVVDT--KTGKGI---KSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQ 160 (224)
Q Consensus 87 P~I~~~~dfLs~~Ec~~Li~~a~~~l-~~s~v~~~--~~g~~~---~s~~R~S~~~~l~~~~~~~~v~~~i~~Ri~~~~g 160 (224)
|.|.++|||||.+|=.+|++.....- ..|.-... +.|-.+ ..+.|+.. +..-. ...+.+.+|+.++-+
T Consensus 72 pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klkt~~--F~G~P----~~~~~v~rrm~~yp~ 145 (306)
T KOG3959|consen 72 PGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLKTDT--FVGMP----EYADMVLRRMSEYPV 145 (306)
T ss_pred CCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhccCc--ccCCc----hHHHHHHHHhhccch
Confidence 78999999999999999999886421 11111110 112111 22344433 22221 356667788887643
Q ss_pred CCccccceeee--EEcCC--CCCccccccCCC
Q 027393 161 VPVENGELIQV--LRYEK--DQYYKPHHDYFS 188 (224)
Q Consensus 161 l~~~~~E~lqv--~rY~~--Gg~y~~H~D~~~ 188 (224)
+. ...++.- +.|++ |.--.||.|-..
T Consensus 146 l~--gfqp~EqCnLeYep~kgsaIdpH~DD~W 175 (306)
T KOG3959|consen 146 LK--GFQPFEQCNLEYEPVKGSAIDPHQDDMW 175 (306)
T ss_pred hh--ccCcHHHcCcccccccCCccCccccchh
Confidence 31 1111211 23664 888999999644
No 22
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=71.28 E-value=22 Score=29.98 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCCccccceeeeEEcCCCCCccccccCC
Q 027393 147 MIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYF 187 (224)
Q Consensus 147 v~~~i~~Ri~~~~gl~~~~~E~lqv~rY~~Gg~y~~H~D~~ 187 (224)
.+..|.++++..+|++.-..+..-|..|.+|+.-.+|.|.-
T Consensus 96 ~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~ 136 (213)
T PRK15401 96 SFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKD 136 (213)
T ss_pred HHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCC
Confidence 57788888888777644445668888899999999999963
No 23
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=57.15 E-value=13 Score=30.14 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=32.9
Q ss_pred eeeeEEcCCCCCccccccCCCCcccCCCCCceEEEEEEeccCC---CCCceeecC
Q 027393 168 LIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDN---VEGGETYFP 219 (224)
Q Consensus 168 ~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~R~~T~l~YLNDv---~~GGeT~Fp 219 (224)
..-+++|++|++=..|-|..-+.. =-+-+.+-||+. +.|||.+..
T Consensus 63 tplllrY~~gdyn~LHqdlyGe~v-------FPlQvv~lLs~Pg~DftGGEFVlt 110 (173)
T PF09859_consen 63 TPLLLRYGPGDYNCLHQDLYGEHV-------FPLQVVILLSEPGEDFTGGEFVLT 110 (173)
T ss_pred chhhheeCCCCccccccCCCCCcc-------cCeEEEEEcCCCCCcccCceEEEE
Confidence 356899999999999999765421 013566679974 689998864
No 24
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=56.10 E-value=23 Score=28.74 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCCccccceeeeEEcCCCCCccccccC
Q 027393 146 PMIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDY 186 (224)
Q Consensus 146 ~v~~~i~~Ri~~~~gl~~~~~E~lqv~rY~~Gg~y~~H~D~ 186 (224)
+.+..|.++++...|.+....+..-|..|.+|+.-.+|.|.
T Consensus 74 ~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~ 114 (169)
T TIGR00568 74 QDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDR 114 (169)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCcccccccc
Confidence 56778889999888875555677888889999999999995
No 25
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=51.22 E-value=54 Score=30.46 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCCccccceeeeEEcCCCCCccccccCCCCcccCCCCCceEEEEEEeccCCC----CCceee
Q 027393 150 AIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNV----EGGETY 217 (224)
Q Consensus 150 ~i~~Ri~~~~gl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~R~~T~l~YLNDv~----~GGeT~ 217 (224)
....-+.+.+|.-....-.+.+..|..|.+--.|-|.. +.|...+++||-|.. -||+..
T Consensus 100 e~r~~~q~vtg~~s~sk~Dms~s~Y~kgd~LL~HDD~i---------etRriaFilYL~~~Dwds~~GG~L~ 162 (476)
T KOG3844|consen 100 EARGEIQDVTGGLSTSKIDMSGSYYRKGDHLLCHDDVI---------ETRRIAFILYLVDPDWDSEYGGELR 162 (476)
T ss_pred HHHHHHHhccCccccceeeeceeeeeccceeccccccc---------cceEEEEEEEecCcccccccCceeE
Confidence 33444555665432334468889999999999998854 678889999999764 377754
No 26
>PHA02708 hypothetical protein; Provisional
Probab=49.07 E-value=18 Score=28.05 Aligned_cols=23 Identities=39% Similarity=0.852 Sum_probs=21.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHhh
Q 027393 5 PSMKIVFGLLTFVTFGMIIGALF 27 (224)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ 27 (224)
|+.|.+++-+.||.+|...|+|+
T Consensus 2 pslRRLl~alalvalgfalgalf 24 (148)
T PHA02708 2 PSLRRLLAALALVALGFALGALF 24 (148)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhc
Confidence 67899999999999999999985
No 27
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=43.89 E-value=22 Score=25.69 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=22.1
Q ss_pred EEcCCCCCccccccCCCCcccCCCCCceEEEEEEeccCCCCCceeecCC
Q 027393 172 LRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFPM 220 (224)
Q Consensus 172 ~rY~~Gg~y~~H~D~~~~~~~~~~~~~R~~T~l~YLNDv~~GGeT~Fp~ 220 (224)
..|.+|++-.+|. + .+..++.++||+-.+..|.+.|.+
T Consensus 5 ni~~~g~~~~~H~-H----------~~s~~SgVyYv~~p~~~~~l~f~~ 42 (101)
T PF13759_consen 5 NIYRKGGYNEPHN-H----------PNSWLSGVYYVQVPEGSGPLRFHD 42 (101)
T ss_dssp EEE-TT--EEEE-------------TT-SEEEEEECE--TTS-SEEEE-
T ss_pred EEeCCCCccCceE-C----------CCcCEEEEEEEECCCCCCceeeeC
Confidence 4577888888884 2 234789999999888888888843
No 28
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=36.46 E-value=44 Score=20.12 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=19.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhH
Q 027393 7 MKIVFGLLTFVTFGMIIGALFQL 29 (224)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (224)
.-||+||+....+|....|.+|.
T Consensus 7 ~GiVlGli~vtl~Glfv~Ay~QY 29 (37)
T PF02529_consen 7 SGIVLGLIPVTLAGLFVAAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHHHHHHHHHHHHHHH
Confidence 46899999888888888888886
No 29
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=32.00 E-value=24 Score=23.98 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=16.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhH
Q 027393 5 PSMKIVFGLLTFVTFGMIIGALFQL 29 (224)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (224)
|--.++++|+.||-+|- +++|+
T Consensus 36 pVgp~~L~l~iFVV~Gs---~ifqi 57 (63)
T PF06624_consen 36 PVGPWLLGLFIFVVCGS---AIFQI 57 (63)
T ss_pred CcCHHHHhhhheeeEcH---HHHHH
Confidence 55578899999998875 55665
No 30
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=31.07 E-value=35 Score=31.81 Aligned_cols=24 Identities=38% Similarity=0.575 Sum_probs=19.5
Q ss_pred HhhhHHHHhhhccCCCC-CCcchhh
Q 027393 25 ALFQLAFIRKLEDSYGT-DFPSFMR 48 (224)
Q Consensus 25 ~~~~~~~~~~~~~~~~~-~~~~~~~ 48 (224)
+-+||+|+++-.+++|+ +||.++-
T Consensus 20 ~~LrLlFvekFayspg~~~fPeIYI 44 (426)
T smart00806 20 NALRLLFIEKFAYSPGGDDFPDIYI 44 (426)
T ss_pred HHHHHHHHHHhccCCCCCCCcceec
Confidence 45799999999999765 6887763
No 31
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=30.09 E-value=70 Score=26.04 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=27.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhHHHHhhhccC
Q 027393 7 MKIVFGLLTFVTFGMIIGALFQLAFIRKLEDS 38 (224)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (224)
.|.+++|+++..+|-|.|+-+=--+.+.+...
T Consensus 8 lr~~l~llal~~a~yivGP~LYWh~~~~~~~~ 39 (176)
T PF06364_consen 8 LRVVLVLLALCLAGYIVGPPLYWHLSEGLAAV 39 (176)
T ss_pred HHHHHHHHHHHHHhheeCchHHHHHHHhhhcc
Confidence 79999999999999999998877777776553
No 32
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=29.34 E-value=44 Score=23.13 Aligned_cols=17 Identities=12% Similarity=0.215 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHh
Q 027393 10 VFGLLTFVTFGMIIGAL 26 (224)
Q Consensus 10 ~~~~~~~~~~~~~~~~~ 26 (224)
|++|+.+|++|+..++.
T Consensus 6 l~PL~~~vg~a~~~a~~ 22 (73)
T PF06522_consen 6 LYPLFVIVGVAVGGATF 22 (73)
T ss_pred ccchHHHHHHHHHHHHH
Confidence 78899999988876554
No 33
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=28.74 E-value=98 Score=18.60 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=18.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhH
Q 027393 6 SMKIVFGLLTFVTFGMIIGALFQL 29 (224)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (224)
-.-||+||+....+|....|-+|-
T Consensus 6 L~GiVLGlipvTl~GlfvaAylQY 29 (37)
T CHL00008 6 LFGIVLGLIPITLAGLFVTAYLQY 29 (37)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHH
Confidence 356888988777777777777775
No 34
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=27.90 E-value=39 Score=29.22 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=21.2
Q ss_pred cccccCCCCcccCCCCCceEEEEEEeccCCCCCceeecC
Q 027393 181 KPHHDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFP 219 (224)
Q Consensus 181 ~~H~D~~~~~~~~~~~~~R~~T~l~YLNDv~~GGeT~Fp 219 (224)
.||.|...... .-.+++|.-+.-...||+|.|-
T Consensus 95 ~wHtD~sy~~~------pp~~~~L~~~~~p~~GG~T~fa 127 (277)
T PRK09553 95 NWHTDVTFIET------PPLGAILAAKQLPSTGGDTLWA 127 (277)
T ss_pred CCeecccCeeC------CCceeEEEEEecCCCCCccHhh
Confidence 49999865431 1124555555556789999984
No 35
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=27.67 E-value=86 Score=20.99 Aligned_cols=23 Identities=43% Similarity=0.704 Sum_probs=17.1
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhhhH
Q 027393 4 APSMKIVFGLLTFVTFGMIIGALFQL 29 (224)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (224)
.|..-+++||..||..|- |++|.
T Consensus 35 ypvgPwLlglFvFVVcGS---a~FqI 57 (65)
T KOG3491|consen 35 YPVGPWLLGLFVFVVCGS---ALFQI 57 (65)
T ss_pred CCcchHHHHHHHHHhhcH---HHHHH
Confidence 366678999999998875 45554
No 36
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.53 E-value=23 Score=26.37 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.1
Q ss_pred EEeccCCCCCceeecC
Q 027393 204 LMYLSDNVEGGETYFP 219 (224)
Q Consensus 204 l~YLNDv~~GGeT~Fp 219 (224)
.-|+=||+.||+|+|-
T Consensus 85 vpypveV~vggatvfv 100 (109)
T COG3870 85 VPYPVEVEVGGATVFV 100 (109)
T ss_pred ccccEEEecCceEEEE
Confidence 4467789999999983
No 37
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=27.35 E-value=1.1e+02 Score=18.39 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=18.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhH
Q 027393 6 SMKIVFGLLTFVTFGMIIGALFQL 29 (224)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (224)
-.-||+||+....+|....|-+|-
T Consensus 6 L~GiVLGlipiTl~GlfvaAylQY 29 (37)
T PRK00665 6 LCGIVLGLIPVTLAGLFVAAWNQY 29 (37)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHH
Confidence 346888988777777777787775
No 38
>PHA02577 2 DNA end protector protein; Provisional
Probab=26.57 E-value=44 Score=27.26 Aligned_cols=66 Identities=12% Similarity=0.036 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCCccccceeeeEEcCCCCCccccccCCCCcccCCCCCceEEEEEEeccCCCCCceeecCCCCC
Q 027393 148 IQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFPMVMT 223 (224)
Q Consensus 148 ~~~i~~Ri~~~~gl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~R~~T~l~YLNDv~~GGeT~Fp~l~~ 223 (224)
.++..++|..-. -..|++++.+|--|.--||.-.... + .--+ .+-+++|||.+...|.|.|.-|++
T Consensus 21 ~~WF~~~ikk~~-------r~h~v~kp~~Grly~F~YdAk~Kdt-L-pywD-rfPLI~flg~~~~~g~~l~~GLNL 86 (181)
T PHA02577 21 LEWFTETIKKDI-------RGHQVVKPQPGRLYTFEYDAKHKDT-L-PYWD-RFPLIIFLGSGQSKAHTLMYGLNL 86 (181)
T ss_pred HHHHHHHHHhhc-------cccccccCcCceEEEEEecccccCc-c-cccc-cCcEEEEEecCCCCCcceEeeeec
Confidence 455666666422 3478889999988888777754321 0 1112 346789999988889999988875
No 39
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=25.47 E-value=30 Score=24.69 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=13.1
Q ss_pred EEcCCCCHHHHHHHHH
Q 027393 91 VLHNFLSMEECDYLRA 106 (224)
Q Consensus 91 ~~~dfLs~~Ec~~Li~ 106 (224)
+-++++|.+||+.|..
T Consensus 24 l~~G~is~~Ecd~Ir~ 39 (81)
T cd08788 24 LTRGFFSSYDCDEIRL 39 (81)
T ss_pred HHcCCccHhhcchhhc
Confidence 3478999999999865
No 40
>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex []. The domain is usually found to the N terminus of a myb-like DNA binding domain and a GATA binding domain. ELM2, in some instances, is also found associated with the ARID DNA binding domain IPR001606 from INTERPRO. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Probab=23.53 E-value=99 Score=19.72 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=21.5
Q ss_pred eEEeecCCcEEEEcCCCCHHHHHHHHHHhcC
Q 027393 80 PEVISWSPRILVLHNFLSMEECDYLRAIARP 110 (224)
Q Consensus 80 ~E~Ls~~P~I~~~~dfLs~~Ec~~Li~~a~~ 110 (224)
.+.|-|+| ++.+++.+.+..+..|+.
T Consensus 28 ~e~lvW~P-----~~~~~d~~l~~yl~~A~s 53 (55)
T PF01448_consen 28 EEELVWSP-----NNPLSDRKLEEYLKVAKS 53 (55)
T ss_pred cceEeECC-----CCCCCHHHHHHHHHHHHh
Confidence 45677888 489999999999998875
No 41
>PHA02723 hypothetical protein; Provisional
Probab=23.33 E-value=78 Score=21.50 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=23.9
Q ss_pred HHHhhhH--HHHhhhccC-CCCCCcchhhccccccccCC--CCcEEEcC
Q 027393 23 IGALFQL--AFIRKLEDS-YGTDFPSFMRRQKNGYLQLP--RGVTFWDN 66 (224)
Q Consensus 23 ~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~Crg~~~~~--~~l~c~y~ 66 (224)
..+.+|| +.++.++.+ -.++..+| ..||+++.-+ ..+.|-|.
T Consensus 24 lasisqlviakieti~ndilnn~ivnf--imcrsnlnn~~i~~~~~iy~ 70 (77)
T PHA02723 24 LASISQLVIAKIETIDNDILNNDIVNF--IMCRSNLNNIFIFFLDCIYT 70 (77)
T ss_pred HHHHHHHHHHHHhhccchhhcccceee--eEecccCCCceeeeeheEee
Confidence 5677887 455566444 23333333 3799887654 44566654
No 42
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=22.81 E-value=1.3e+02 Score=25.02 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=29.4
Q ss_pred eeeEEcCCCCCccccccCCCCcccCCCCCceEEEEEEeccCCCCCceeecC
Q 027393 169 IQVLRYEKDQYYKPHHDYFSDTFNLKRGGQRIATMLMYLSDNVEGGETYFP 219 (224)
Q Consensus 169 lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~R~~T~l~YLNDv~~GGeT~Fp 219 (224)
.=+.++.+||+-..|. + .+..++..+||+....+|...|-
T Consensus 98 ~W~ni~~~Gg~h~~H~-H----------p~~~lSgvyYl~~p~~~g~~~f~ 137 (201)
T TIGR02466 98 AWVNILPQGGTHSPHL-H----------PGSVISGTYYVQTPENCGAIKFE 137 (201)
T ss_pred EeEEEcCCCCccCceE-C----------CCceEEEEEEEeCCCCCCceeEe
Confidence 3355678899888885 2 23478999999988778888773
No 43
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.46 E-value=4.1e+02 Score=23.95 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCCccccceeeeEEcCCCCCccccccC
Q 027393 147 MIQAIEKRISVFSQVPVENGELIQVLRYEKDQYYKPHHDY 186 (224)
Q Consensus 147 v~~~i~~Ri~~~~gl~~~~~E~lqv~rY~~Gg~y~~H~D~ 186 (224)
+.+.+.+|+-..--+|. ..+..-|..|++|+.=.+|.|.
T Consensus 191 ~~~~ii~rlv~~~~ip~-~pd~~~iN~Ye~G~~i~ph~~~ 229 (323)
T KOG4176|consen 191 LFKSIIDRLVSWRVIPE-RPDQCTINFYEPGDGIPPHIDH 229 (323)
T ss_pred HHHHHHHHhhhhccCCC-CCCeeEEEeeCCCCCCCCCCCh
Confidence 45555566655444555 5678899999999999999864
No 44
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=20.78 E-value=23 Score=26.72 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=7.7
Q ss_pred ccCCCCCceeec
Q 027393 207 LSDNVEGGETYF 218 (224)
Q Consensus 207 LNDv~~GGeT~F 218 (224)
--+|..||+|+|
T Consensus 88 pveV~vGGATVF 99 (109)
T PF06153_consen 88 PVEVEVGGATVF 99 (109)
T ss_dssp -EEEEE--EEEE
T ss_pred ceEEEEcccEEE
Confidence 446889999999
Done!