Query 027394
Match_columns 224
No_of_seqs 178 out of 1396
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 15:23:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2t_A Acid phosphatase; all a 99.8 1.9E-20 6.3E-25 160.0 9.1 87 83-179 109-208 (231)
2 2ipb_A PHON protein, class A n 99.8 5.1E-20 1.7E-24 157.1 6.5 87 83-179 97-196 (230)
3 1qi9_A Protein (vanadium bromo 99.6 2.4E-15 8E-20 142.4 6.8 95 85-179 377-505 (556)
4 1up8_A Vanadium-dependent brom 99.2 1.8E-11 6.2E-16 116.3 9.0 78 102-179 478-572 (598)
5 3bb0_A Vanadium chloroperoxida 99.2 1.4E-11 4.8E-16 117.9 5.9 96 80-175 344-511 (609)
6 2lx0_A Membrane fusion protein 43.1 27 0.00093 19.5 3.0 26 159-184 2-27 (32)
7 2kv5_A FST, putative uncharact 24.9 55 0.0019 19.0 2.4 21 202-224 8-28 (33)
8 1pfi_A Major coat protein of P 14.0 2.4E+02 0.0081 17.2 3.9 14 166-179 22-35 (46)
9 2k1k_A Ephrin type-A receptor 10.7 2.8E+02 0.0096 16.2 3.5 13 164-176 11-23 (38)
10 2hnh_A DNA polymerase III alph 9.0 1.8E+02 0.0061 28.9 2.9 23 103-126 752-774 (910)
No 1
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=99.82 E-value=1.9e-20 Score=159.98 Aligned_cols=87 Identities=20% Similarity=0.082 Sum_probs=68.5
Q ss_pred HHHHHHHHhhCCCCCCC-----------C--CCCCCCCCChHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 027394 83 ALAMVLKRILNQERPVP-----------T--LKSDPGMPSSHAQSIFFIGGFIILSIVEWLGINEASLMISGFTLAIGSY 149 (224)
Q Consensus 83 ~~~~ilK~~v~rpRP~~-----------~--~~~~~sFPSgHa~~~~~~av~~~l~~~~~~~~~~~~~~l~~~~~~~~~l 149 (224)
+++..+|..++||||+. . .+.++||||||++++++++.++..+. ++ .+ ..++.++..
T Consensus 109 ~~~~~lK~~~~r~RP~~~~~~~~~~p~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~-~~-----~~----~~~~~~a~~ 178 (231)
T 1d2t_A 109 LATRSAKDHYMRIRPFAFYGVSTCNTTEQDKLSKNGSYPSGHTSIGWATALVLAEIN-PQ-----RQ----NEILKRGYE 178 (231)
T ss_dssp TTTHHHHHHHCCCCHHHHHTCCCSCC--CCCCCSSCCSSCHHHHHHHHHHHHHHHHC-GG-----GH----HHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCccCCCCceecCCcCCCCCCCCCChHHHHHHHHHHHHHHHHH-HH-----HH----HHHHHHHHH
Confidence 78999999999999983 1 35779999999999877666554332 11 11 124567889
Q ss_pred HHHHHHHcccCChHHHHHHHHHHHHHHHHH
Q 027394 150 LSWLRVSQQLHTIGQVVVGAAVGSTFSLLW 179 (224)
Q Consensus 150 v~~SRiyLGvH~~sDVl~G~llG~~~a~i~ 179 (224)
+++||+|+|+|||+||++|+++|..++...
T Consensus 179 v~~SRvylGvH~psDVlaG~~lG~~~~~~~ 208 (231)
T 1d2t_A 179 LGQSRVICGYHWQSDVDAARVVGSAVVATL 208 (231)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887654
No 2
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=99.79 E-value=5.1e-20 Score=157.07 Aligned_cols=87 Identities=18% Similarity=0.071 Sum_probs=67.9
Q ss_pred HHHHHHHHhhCCCCCCCC-------------CCCCCCCCChHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 027394 83 ALAMVLKRILNQERPVPT-------------LKSDPGMPSSHAQSIFFIGGFIILSIVEWLGINEASLMISGFTLAIGSY 149 (224)
Q Consensus 83 ~~~~ilK~~v~rpRP~~~-------------~~~~~sFPSgHa~~~~~~av~~~l~~~~~~~~~~~~~~l~~~~~~~~~l 149 (224)
+++.++|..++||||+.. ...++||||||++++++++.++..+.. + + +. .++.++..
T Consensus 97 ~~~~~lK~~~~r~RP~~~~~~~~~~~~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~-~---~--~~----~~~~~a~~ 166 (230)
T 2ipb_A 97 YATASAKKYYMRTRPFVLFNHSTCRPEDENTLRKDGSYPSGHDAYSTLLALVLSQARP-E---R--AQ----ELARRGWE 166 (230)
T ss_dssp TTTHHHHHHHCCCCHHHHTTCCCSCGGGHHHHHTSCCSSCHHHHHHHHHHHHHHHHCG-G---G--HH----HHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCccCCCCeeccCcccCCCCCCCcChHHHHHHHHHHHHHHHHHH-H---H--HH----HHHHHHHH
Confidence 789999999999999841 247899999999998776655443321 1 1 11 23467889
Q ss_pred HHHHHHHcccCChHHHHHHHHHHHHHHHHH
Q 027394 150 LSWLRVSQQLHTIGQVVVGAAVGSTFSLLW 179 (224)
Q Consensus 150 v~~SRiyLGvH~~sDVl~G~llG~~~a~i~ 179 (224)
+++||+|+|+|||+||++|+++|..++...
T Consensus 167 v~~SRv~~G~H~~sDVlaG~~lG~~~~~~~ 196 (230)
T 2ipb_A 167 FGQSRVICGAHWQSDVDAGRYVGAVEFARL 196 (230)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999877654
No 3
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=99.56 E-value=2.4e-15 Score=142.38 Aligned_cols=95 Identities=18% Similarity=0.092 Sum_probs=67.4
Q ss_pred HHHHHHhhCCCCCCC---------C------CCCCCCCCChHHHHHHHHHHHHHHHHHHHh-----hhh------hHH--
Q 027394 85 AMVLKRILNQERPVP---------T------LKSDPGMPSSHAQSIFFIGGFIILSIVEWL-----GIN------EAS-- 136 (224)
Q Consensus 85 ~~ilK~~v~rpRP~~---------~------~~~~~sFPSgHa~~~~~~av~~~l~~~~~~-----~~~------~~~-- 136 (224)
+.++|.+++|+||+. + .+.++||||||++.+++++..+..++..+. ..+ ..+
T Consensus 377 ~~lLK~l~~RpRP~~~~~~~~~Ll~~~~~~~tp~~~SFPSGHAt~A~A~A~vL~~l~g~~~~~~~~~~r~~~~~~G~~r~ 456 (556)
T 1qi9_A 377 AELLKRVAAINAAQNPNNEVTYLLPQAIQEGSPTHPSYPSGHATQNGAFATVLKALIGLDRGGDCYPDPVYPDDDGLKLI 456 (556)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCCCCCBSSTTCSCSSCCSSCHHHHHHHHHHHHHHHHHCHHHHTSBCSSCEEECTTSSSEE
T ss_pred hhHHHhhhccCCCCCCccccceeeecccccCCCCCCCCChHHHHHHHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 358999999999973 1 247799999999998877776655542210 000 000
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHHHH
Q 027394 137 ------LMISGFTLAIGSYLSWLRVSQQLHTIGQVVVGAAVGSTFSLLW 179 (224)
Q Consensus 137 ------~~l~~~~~~~~~lv~~SRiyLGvH~~sDVl~G~llG~~~a~i~ 179 (224)
..+...+..++..+++||+|+|+|||+||++|+++|..++...
T Consensus 457 ~~~~~~l~~~~~l~~lA~lIg~SRVYlGVHYPSDVlaG~lLG~~va~~v 505 (556)
T 1qi9_A 457 DFRGSCLTFEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRT 505 (556)
T ss_dssp ECCSSCCBHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeehhhHHHHHHHHHHHHHHeeCccCHHHHHHHHHHHHHHHHHH
Confidence 0011113458889999999999999999999999999877643
No 4
>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase, vanadate; 2.20A {Corallina pilulifera} SCOP: a.111.1.2 PDB: 1qhb_A
Probab=99.23 E-value=1.8e-11 Score=116.27 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=53.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHhhh-----------------hhHHHHHHHHHHHHHHHHHHHHHHcccCChHH
Q 027394 102 KSDPGMPSSHAQSIFFIGGFIILSIVEWLGI-----------------NEASLMISGFTLAIGSYLSWLRVSQQLHTIGQ 164 (224)
Q Consensus 102 ~~~~sFPSgHa~~~~~~av~~~l~~~~~~~~-----------------~~~~~~l~~~~~~~~~lv~~SRiyLGvH~~sD 164 (224)
+..+||||||++.+++++..+..++..+... +.....+...+..++..+++||+|+|+|||+|
T Consensus 478 P~~pSYPSGHAt~S~A~A~vL~~lf~~~~~~~~~~~~~~~G~~R~~p~~g~~ltv~~sl~~lA~eig~SRVYlGVHypSD 557 (598)
T 1up8_A 478 PFHPSYGSGHAVVAGACVTILKAFFDSGIEIDQVFEVDKDEDKLVKSSFKGTLTVAGELNKLADNIAIGRNMAGVHYFSD 557 (598)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHHBTTTCBCSCCEEECSSSSSEEECCCCSCCBHHHHHHHHHHHHHHHHHHHTSCCHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHhccccccccccccccCcccccccccccchhHHHHHHHHHHHHHHHhheeeeecHHH
Confidence 4789999999998876666554443222100 00000112235678889999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027394 165 VVVGAAVGSTFSLLW 179 (224)
Q Consensus 165 Vl~G~llG~~~a~i~ 179 (224)
|++|+.+|..++...
T Consensus 558 VlAG~~LG~aVa~~v 572 (598)
T 1up8_A 558 QFESLLLGEQVAIGI 572 (598)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998776543
No 5
>3bb0_A Vanadium chloroperoxidase; protein phosphate-intermediate complex, phospatase activity, chloride, metal-binding, oxidoreductase, secreted; 1.50A {Curvularia inaequalis} PDB: 1vns_A 1vnc_A 1vni_A 1idq_A 1vne_A 1vnf_A 1idu_A 1vng_A 1vnh_A
Probab=99.18 E-value=1.4e-11 Score=117.86 Aligned_cols=96 Identities=11% Similarity=-0.070 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhhCCCCCCC-----------------------------CCCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Q 027394 80 INSALAMVLKRILNQERPVP-----------------------------TLKSDPGMPSSHAQSIFFIGGFIILSIVEWL 130 (224)
Q Consensus 80 ~~~~~~~ilK~~v~rpRP~~-----------------------------~~~~~~sFPSgHa~~~~~~av~~~l~~~~~~ 130 (224)
-..+.++.+|..+.|+||+. ..+..+||||||++++++.+..+..+...+.
T Consensus 344 DA~ia~w~~K~~y~R~RP~taI~~~~~~~~~dp~w~~l~~~~~~~~~~~~tP~~pSYPSGHAt~s~A~A~vL~~~f~~~~ 423 (609)
T 3bb0_A 344 DAGIFSWKEKWEFEFWRPLSGVRDDGRPDHGDPFWLTLGAPATNTNDIPFKPPFPAYPSGHATFGGAVFQMVRRYYNGRV 423 (609)
T ss_dssp HHHHHHHHHHHHHCBCCHHHHHHTCCCTTTCCTTCCBCCBCCTTSSSCCBCCSSCCSSCHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHhhhhcCCCcCchhhcccccccCCccchhhcccccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 34555677999999999952 0245699999999998877776655441000
Q ss_pred h------hhhHHHH-------------------------------------HHHHHHHHHHHHHHHHHHcccCChHHHHH
Q 027394 131 G------INEASLM-------------------------------------ISGFTLAIGSYLSWLRVSQQLHTIGQVVV 167 (224)
Q Consensus 131 ~------~~~~~~~-------------------------------------l~~~~~~~~~lv~~SRiyLGvH~~sDVl~ 167 (224)
+ ....... -...+..++..+++||+|+|+||++||++
T Consensus 424 ~~~~~~G~d~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~~sl~~~A~e~g~SRIY~GVHypsDv~a 503 (609)
T 3bb0_A 424 GTWKDDEPDNIAIDMMISEELNGVNRDLRQPYDPTAPIEDQPGIVRTRIVRHFDSAWELMFENAISRIFLGVHWRFDAAA 503 (609)
T ss_dssp BCCCTTSCCCCCEEEEECTTSSSSCEEESSCCCTTSCGGGSCEEECCCCEEEESCHHHHHHHHHHHHHHTTSSCHHHHSC
T ss_pred ccccccCccccceeecccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHhhhhheeeeeCHHHHHH
Confidence 0 0000000 00113357788999999999999999999
Q ss_pred HHHHHHHH
Q 027394 168 GAAVGSTF 175 (224)
Q Consensus 168 G~llG~~~ 175 (224)
|..+|..+
T Consensus 504 G~~lG~~~ 511 (609)
T 3bb0_A 504 ARDILIPT 511 (609)
T ss_dssp HHHHBCBC
T ss_pred HHHHHHhh
Confidence 99999654
No 6
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=43.09 E-value=27 Score=19.50 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=15.0
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHH
Q 027394 159 LHTIGQVVVGAAVGSTFSLLWFFSWK 184 (224)
Q Consensus 159 vH~~sDVl~G~llG~~~a~i~~~l~~ 184 (224)
-|+.-+|++|...=..+...-+|++.
T Consensus 2 khtiweviaglvalltflafgfwlfk 27 (32)
T 2lx0_A 2 KHTIWEVIAGLVALLTFLAFGFWLFK 27 (32)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888999987643333333344443
No 7
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=24.86 E-value=55 Score=18.96 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcC
Q 027394 202 ALAAAAFCVGFVLYVIKHWLKDE 224 (224)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~ 224 (224)
+++++. .|.++=.++|||.|+
T Consensus 8 IIaPiv--VGvvl~L~d~WLn~r 28 (33)
T 2kv5_A 8 VIAPIF--VGLVLEMISRVLDEE 28 (33)
T ss_dssp HHHHHH--HHHHHHHHHHHTTCC
T ss_pred HHHHHH--HHHHHHHHHHHHccc
Confidence 444443 477888889999764
No 8
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=13.97 E-value=2.4e+02 Score=17.16 Aligned_cols=14 Identities=29% Similarity=0.280 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 027394 166 VVGAAVGSTFSLLW 179 (224)
Q Consensus 166 l~G~llG~~~a~i~ 179 (224)
++|.+.|.++-...
T Consensus 22 i~~~IVGaLvil~V 35 (46)
T 1pfi_A 22 IGGYIVGALVILAV 35 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666665544333
No 9
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=10.73 E-value=2.8e+02 Score=16.16 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHH
Q 027394 164 QVVVGAAVGSTFS 176 (224)
Q Consensus 164 DVl~G~llG~~~a 176 (224)
..++|..+|.+.+
T Consensus 11 GaIAGiVvG~v~g 23 (38)
T 2k1k_A 11 GEIVAVIFGLLLG 23 (38)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CceeeeehHHHHH
Confidence 4456666666544
No 10
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=8.99 E-value=1.8e+02 Score=28.93 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=15.1
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHH
Q 027394 103 SDPGMPSSHAQSIFFIGGFIILSI 126 (224)
Q Consensus 103 ~~~sFPSgHa~~~~~~av~~~l~~ 126 (224)
.+||||-+||+. .+...|-+.|+
T Consensus 752 a~YgFnkSHaaa-Ya~~ay~tAyl 774 (910)
T 2hnh_A 752 AGYGFNKSHSAA-YALVSYQTLWL 774 (910)
T ss_dssp HTTCBCHHHHHH-HHHHHHHHHHH
T ss_pred hccCCcchhHHH-HHHHHHHHHHH
Confidence 589999999974 33444444343
Done!