Query 027395
Match_columns 224
No_of_seqs 176 out of 1479
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 09:19:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 1.7E-36 3.7E-41 248.0 6.0 167 1-169 1-177 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 3.2E-34 7E-39 200.6 3.3 73 2-75 1-73 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 2.4E-31 5.3E-36 188.7 4.4 73 2-74 1-73 (83)
4 smart00432 MADS MADS domain. 100.0 7.7E-31 1.7E-35 173.4 3.9 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 3.1E-30 6.6E-35 170.7 3.2 58 2-59 1-58 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 4.1E-29 8.8E-34 160.0 -2.0 51 9-59 1-51 (51)
7 KOG0015 Regulator of arginine 99.8 2E-20 4.3E-25 157.2 2.4 65 2-67 63-127 (338)
8 COG5068 ARG80 Regulator of arg 99.5 2E-14 4.4E-19 126.2 2.6 67 1-68 81-147 (412)
9 PF01486 K-box: K-box region; 99.4 6.3E-13 1.4E-17 97.6 7.9 85 101-185 10-95 (100)
10 PF10584 Proteasome_A_N: Prote 90.3 0.047 1E-06 28.9 -0.9 14 43-56 3-16 (23)
11 PF07106 TBPIP: Tat binding pr 83.4 8.7 0.00019 30.4 8.1 55 107-162 113-167 (169)
12 PHA03155 hypothetical protein; 79.9 22 0.00049 26.4 8.4 57 104-160 9-65 (115)
13 PF06698 DUF1192: Protein of u 71.9 12 0.00025 24.7 4.6 34 128-161 12-45 (59)
14 PF07106 TBPIP: Tat binding pr 70.7 48 0.001 26.1 8.9 63 98-164 74-136 (169)
15 PRK04098 sec-independent trans 70.4 6.6 0.00014 31.1 3.7 82 42-151 14-95 (158)
16 PHA03162 hypothetical protein; 68.7 50 0.0011 25.2 8.5 57 104-160 14-74 (135)
17 PF05812 Herpes_BLRF2: Herpesv 68.1 49 0.0011 24.9 8.2 57 104-160 4-64 (118)
18 PF11559 ADIP: Afadin- and alp 65.5 40 0.00087 26.0 7.4 11 48-58 16-26 (151)
19 PF06008 Laminin_I: Laminin Do 62.9 34 0.00073 29.1 7.1 57 103-160 87-143 (264)
20 KOG4603 TBP-1 interacting prot 59.9 91 0.002 25.1 8.7 57 104-161 117-173 (201)
21 PF01502 PRA-CH: Phosphoribosy 58.9 3.4 7.3E-05 28.5 0.1 37 17-53 18-63 (75)
22 PF09941 DUF2173: Uncharacteri 57.9 11 0.00024 27.9 2.7 38 32-70 3-42 (108)
23 PF06717 DUF1202: Protein of u 57.6 27 0.00058 30.3 5.3 55 80-136 131-185 (308)
24 PRK04654 sec-independent trans 55.9 12 0.00025 31.1 2.8 27 43-72 15-41 (214)
25 PF10623 PilI: Plasmid conjuga 53.2 14 0.0003 25.6 2.4 32 42-73 8-41 (83)
26 COG0139 HisI Phosphoribosyl-AM 53.0 10 0.00022 28.1 1.8 38 18-55 51-97 (111)
27 KOG4603 TBP-1 interacting prot 49.2 1.4E+02 0.003 24.1 7.7 53 107-163 90-142 (201)
28 PF14009 DUF4228: Domain of un 47.2 18 0.00039 28.1 2.7 33 40-73 14-46 (181)
29 TIGR02231 conserved hypothetic 46.9 1.1E+02 0.0024 28.7 8.2 66 98-163 73-150 (525)
30 PF10491 Nrf1_DNA-bind: NLS-bi 43.3 24 0.00052 29.1 2.8 48 25-73 34-88 (214)
31 COG3883 Uncharacterized protei 43.2 1.6E+02 0.0035 25.4 7.9 29 140-169 80-108 (265)
32 KOG0184 20S proteasome, regula 42.8 13 0.00029 31.0 1.2 22 36-57 3-24 (254)
33 cd02980 TRX_Fd_family Thioredo 41.5 27 0.00058 23.2 2.5 31 39-70 47-77 (77)
34 COG4831 Roadblock/LC7 domain [ 41.3 27 0.00058 25.3 2.4 29 31-60 4-32 (109)
35 KOG0183 20S proteasome, regula 41.3 15 0.00032 30.6 1.3 16 41-56 4-19 (249)
36 cd03064 TRX_Fd_NuoE TRX-like [ 39.5 26 0.00055 23.8 2.1 30 38-70 51-80 (80)
37 PF01920 Prefoldin_2: Prefoldi 37.9 1.4E+02 0.0031 20.9 7.1 25 104-128 77-101 (106)
38 TIGR01478 STEVOR variant surfa 37.7 60 0.0013 28.2 4.4 45 7-72 25-69 (295)
39 PF03233 Cauli_AT: Aphid trans 36.2 2.2E+02 0.0048 22.6 10.4 26 137-162 135-160 (163)
40 PF11460 DUF3007: Protein of u 35.8 98 0.0021 22.7 4.7 17 134-150 87-103 (104)
41 PRK09039 hypothetical protein; 35.5 1.6E+02 0.0036 26.1 7.1 16 140-155 172-187 (343)
42 PF13870 DUF4201: Domain of un 34.9 2.3E+02 0.0049 22.4 8.3 56 106-162 9-64 (177)
43 PF11336 DUF3138: Protein of u 34.2 2.3E+02 0.0051 26.3 7.8 61 103-163 25-106 (514)
44 PF04977 DivIC: Septum formati 33.8 97 0.0021 20.6 4.4 27 102-128 23-49 (80)
45 PF12018 DUF3508: Domain of un 33.4 30 0.00064 29.9 2.0 35 18-62 209-243 (281)
46 COG4917 EutP Ethanolamine util 33.2 30 0.00065 26.7 1.7 25 34-58 58-82 (148)
47 KOG3026 Splicing factor SPF30 32.2 3.2E+02 0.0069 23.2 7.9 26 140-169 26-51 (262)
48 PF14257 DUF4349: Domain of un 31.6 3.1E+02 0.0068 23.0 8.3 56 100-162 129-184 (262)
49 PF07676 PD40: WD40-like Beta 31.4 42 0.0009 19.1 1.9 20 41-60 9-28 (39)
50 COG5000 NtrY Signal transducti 31.3 35 0.00077 32.9 2.3 31 36-68 374-404 (712)
51 PF09151 DUF1936: Domain of un 30.7 48 0.001 18.8 1.9 24 34-57 2-25 (36)
52 PRK01919 tatB sec-independent 30.0 1.5E+02 0.0032 23.7 5.3 28 43-73 15-42 (169)
53 KOG0182 20S proteasome, regula 29.0 34 0.00075 28.4 1.6 19 39-57 7-25 (246)
54 PF08432 Vfa1: AAA-ATPase Vps4 28.8 1.6E+02 0.0034 23.7 5.4 14 38-51 10-23 (182)
55 PF09158 MotCF: Bacteriophage 28.7 23 0.00049 25.9 0.4 53 5-73 19-72 (103)
56 cd01668 TGS_RelA_SpoT TGS_RelA 28.0 52 0.0011 20.4 2.1 26 45-70 1-26 (60)
57 COG3411 Ferredoxin [Energy pro 27.7 51 0.0011 22.0 1.9 30 44-73 18-47 (64)
58 PF04102 SlyX: SlyX; InterPro 26.8 1.4E+02 0.0029 20.0 4.0 32 98-129 20-51 (69)
59 COG4575 ElaB Uncharacterized c 26.6 2.6E+02 0.0057 20.5 7.1 50 106-163 11-60 (104)
60 COG3074 Uncharacterized protei 26.2 1.8E+02 0.004 19.7 4.4 11 108-118 23-33 (79)
61 PF10662 PduV-EutP: Ethanolami 25.4 47 0.001 25.8 1.7 32 35-68 58-89 (143)
62 KOG4302 Microtubule-associated 24.9 6.4E+02 0.014 24.8 9.5 64 102-165 116-185 (660)
63 cd03063 TRX_Fd_FDH_beta TRX-li 24.8 75 0.0016 22.7 2.5 36 38-73 44-80 (92)
64 COG5068 ARG80 Regulator of arg 24.7 47 0.001 30.3 1.8 48 8-61 18-65 (412)
65 PTZ00046 rifin; Provisional 24.6 68 0.0015 28.8 2.7 30 36-74 39-68 (358)
66 PF11629 Mst1_SARAH: C termina 24.4 1.5E+02 0.0034 18.6 3.5 20 132-151 3-22 (49)
67 PRK00051 hisI phosphoribosyl-A 24.3 48 0.001 25.2 1.5 36 17-52 45-90 (125)
68 PRK00888 ftsB cell division pr 23.9 1.8E+02 0.0039 21.2 4.5 31 100-130 31-61 (105)
69 PF09006 Surfac_D-trimer: Lung 23.5 1.7E+02 0.0037 18.1 3.6 18 101-118 4-21 (46)
70 PF14723 SSFA2_C: Sperm-specif 23.5 2E+02 0.0042 23.2 4.8 18 140-157 159-176 (179)
71 PF04945 YHS: YHS domain; Int 23.4 41 0.00089 20.5 0.8 23 39-61 6-31 (47)
72 PRK04406 hypothetical protein; 23.4 2.5E+02 0.0054 19.2 4.9 27 100-126 29-55 (75)
73 COG1579 Zn-ribbon protein, pos 22.8 4.7E+02 0.01 22.1 7.4 10 139-148 88-97 (239)
74 cd03750 proteasome_alpha_type_ 22.5 32 0.00069 28.4 0.3 13 44-56 4-16 (227)
75 KOG1853 LIS1-interacting prote 22.2 3E+02 0.0064 23.7 5.9 16 108-123 110-125 (333)
76 PF02183 HALZ: Homeobox associ 21.8 2E+02 0.0044 17.6 3.7 21 102-122 11-31 (45)
77 PRK00846 hypothetical protein; 21.8 2.8E+02 0.0061 19.1 4.9 27 100-126 31-57 (77)
78 KOG2417 Predicted G-protein co 21.7 1.4E+02 0.0031 27.0 4.1 30 140-169 186-215 (462)
79 PRK00295 hypothetical protein; 21.4 2.2E+02 0.0048 19.0 4.2 22 101-122 24-45 (68)
80 KOG4797 Transcriptional regula 21.4 3.5E+02 0.0075 20.1 5.7 41 103-147 67-107 (123)
81 PF03785 Peptidase_C25_C: Pept 21.3 29 0.00062 24.3 -0.2 25 32-56 16-40 (81)
82 PF04566 RNA_pol_Rpb2_4: RNA p 21.1 29 0.00062 23.0 -0.2 30 23-54 24-54 (63)
83 PF06574 FAD_syn: FAD syntheta 21.0 1.5E+02 0.0032 23.2 3.8 26 27-52 23-48 (157)
84 PF08317 Spc7: Spc7 kinetochor 21.0 5.7E+02 0.012 22.4 9.2 31 133-163 202-232 (325)
85 smart00787 Spc7 Spc7 kinetocho 20.7 5.9E+02 0.013 22.4 8.5 32 132-163 196-227 (312)
86 KOG1760 Molecular chaperone Pr 20.6 3.2E+02 0.0069 20.8 5.2 34 102-135 94-127 (131)
87 PF02824 TGS: TGS domain; Int 20.6 87 0.0019 20.1 2.0 27 45-71 1-27 (60)
88 PRK11637 AmiB activator; Provi 20.2 6E+02 0.013 23.1 8.2 17 150-166 158-174 (428)
89 PF10805 DUF2730: Protein of u 20.2 3.1E+02 0.0068 19.8 5.1 31 138-168 73-103 (106)
90 KOG0804 Cytoplasmic Zn-finger 20.2 6.6E+02 0.014 23.5 8.1 28 102-129 388-415 (493)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=1.7e-36 Score=248.03 Aligned_cols=167 Identities=29% Similarity=0.366 Sum_probs=116.7
Q ss_pred CCcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccch-hhhhHHhhhhcccCC---
Q 027395 1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSR-RIEDIFLRFICDEKQ--- 76 (224)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~-s~~~VleRY~~~~~~--- 76 (224)
|||+||+|++|+|+++|||||+|||+||||||+||||||||+||||||||+|++|+|++++ +|..|++||......
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999996553 399999999876322
Q ss_pred CCCcchh-HHHHH-hhhccccchhhHhhhhHHHHHHHHHHHHHHHHHH---HHHhhhcCCCCCCCCCH-HHHHHHHHHHH
Q 027395 77 EPLENED-HLYRS-LVHSKCEGEMLDLIKKKEELEKKLIELCERQFDA---EEKMSFYQPKVEDITTI-HEAVDHEKFLN 150 (224)
Q Consensus 77 ~~~~~~~-~l~~~-l~kLk~e~~~~~~~~~~e~L~~el~~L~~q~~~~---~~~~r~~~ge~l~~lSl-~EL~~LE~~Le 150 (224)
......+ .+... +..+..+.+..... ......+...+....+.+ ....+.+.+.++..+++ .+|..++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~ 158 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELK--LQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLE 158 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhcc--chhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHH
Confidence 1111111 11100 11111100000000 001111222222222222 23466778899999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027395 151 SAIRRVEKLNAKLLQKESA 169 (224)
Q Consensus 151 ~~L~~Ir~rK~~ll~~qi~ 169 (224)
..+..++..+...+.+++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~ 177 (195)
T KOG0014|consen 159 SSLHNSRSSKSKPLSDSNF 177 (195)
T ss_pred HhhcCCCCCCCcCCcchhh
Confidence 9999999988887766654
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=3.2e-34 Score=200.57 Aligned_cols=73 Identities=48% Similarity=0.797 Sum_probs=69.7
Q ss_pred CcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhhcccC
Q 027395 2 GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICDEK 75 (224)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~~~ 75 (224)
||+||+|++|||+.+|++||+||++||||||+||||||||+||+|||||+|++|+|+++ ++++||+||...+.
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~-s~~~vl~ry~~~~~ 73 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSP-SMEKIIERYQKTSG 73 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCC-CHHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999999999999999999999775 79999999998743
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=2.4e-31 Score=188.70 Aligned_cols=73 Identities=41% Similarity=0.725 Sum_probs=69.0
Q ss_pred CcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhhccc
Q 027395 2 GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICDE 74 (224)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~~ 74 (224)
||+||+|++|+|+.+|+|||+||+.||||||+||||||||+||+|||||+|+++.|++++++..+++||....
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~ 73 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLS 73 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcC
Confidence 8999999999999999999999999999999999999999999999999999999976645999999998763
No 4
>smart00432 MADS MADS domain.
Probab=99.96 E-value=7.7e-31 Score=173.42 Aligned_cols=59 Identities=54% Similarity=0.960 Sum_probs=57.2
Q ss_pred CcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccc
Q 027395 2 GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60 (224)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~ 60 (224)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999653
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=3.1e-30 Score=170.69 Aligned_cols=58 Identities=53% Similarity=0.913 Sum_probs=56.8
Q ss_pred CcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCcccccc
Q 027395 2 GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSS 59 (224)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s 59 (224)
||+||+|++|+|+..|++||+||+.||||||+||||||||+||+|||||+|+++.|++
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~ 58 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS 58 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence 8999999999999999999999999999999999999999999999999999999965
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.94 E-value=4.1e-29 Score=160.00 Aligned_cols=51 Identities=49% Similarity=0.869 Sum_probs=46.9
Q ss_pred EEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCcccccc
Q 027395 9 QKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSS 59 (224)
Q Consensus 9 k~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s 59 (224)
|+|+|+..|++||+||+.||||||+|||+||||+||+|||||+|++|+|||
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 589999999999999999999999999999999999999999999999976
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.79 E-value=2e-20 Score=157.22 Aligned_cols=65 Identities=40% Similarity=0.586 Sum_probs=60.6
Q ss_pred CcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHH
Q 027395 2 GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIF 67 (224)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~Vl 67 (224)
||+||+|++|||+..|.|||||||.||||||+|||||+|.+|-|+|.|.+|-+|+|+++ .++.||
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTp-KLep~i 127 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATP-KLEPMI 127 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccc-cccccc
Confidence 79999999999999999999999999999999999999999999999999999999886 444444
No 8
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.46 E-value=2e-14 Score=126.25 Aligned_cols=67 Identities=37% Similarity=0.532 Sum_probs=61.9
Q ss_pred CCcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHh
Q 027395 1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFL 68 (224)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~Vle 68 (224)
|||+|+.|..|+|+.+|.|||+||+.||+|||.||+||.|.+|+++|.|.+|+++.|+++ ..+.|+.
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp-~~e~v~~ 147 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP-KLESVVK 147 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCC-ccccccc
Confidence 789999999999999999999999999999999999999999999999999999999775 4555443
No 9
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.42 E-value=6.3e-13 Score=97.64 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=75.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHH-H
Q 027395 101 LIKKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLLQKESASRIPESIEL-E 179 (224)
Q Consensus 101 ~~~~~e~L~~el~~L~~q~~~~~~~~r~~~ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~ll~~qi~~~~~~~~q~-~ 179 (224)
+....+.+..++.+|+.+++.++..+|++.|++|++||++||+.||++|+.+|.+||+||.+++.+++..++++...+ +
T Consensus 10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~ 89 (100)
T PF01486_consen 10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEE 89 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567889999999999999999999999999999999999999999999999999999999999999998655444 6
Q ss_pred hhcccC
Q 027395 180 AASFFD 185 (224)
Q Consensus 180 ~~~~l~ 185 (224)
+|..|.
T Consensus 90 en~~L~ 95 (100)
T PF01486_consen 90 ENNQLR 95 (100)
T ss_pred HHHHHH
Confidence 666553
No 10
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=90.30 E-value=0.047 Score=28.90 Aligned_cols=14 Identities=36% Similarity=0.695 Sum_probs=11.2
Q ss_pred eEEEeecCCCCccc
Q 027395 43 VGLLMFSPSGKLTK 56 (224)
Q Consensus 43 ValiifS~~Gkl~~ 56 (224)
-.+.+|||.|++|.
T Consensus 3 ~~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 3 RSITTFSPDGRLFQ 16 (23)
T ss_dssp SSTTSBBTTSSBHH
T ss_pred CCceeECCCCeEEe
Confidence 34578999999985
No 11
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.36 E-value=8.7 Score=30.38 Aligned_cols=55 Identities=22% Similarity=0.120 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 107 ELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAK 162 (224)
Q Consensus 107 ~L~~el~~L~~q~~~~~~~~r~~~ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~ 162 (224)
+|...+..|+.++..++.++..+.. .-...|.+|...++..........+.||.-
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRKri 167 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRKRI 167 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444544444444433 223367888888888888888888887753
No 12
>PHA03155 hypothetical protein; Provisional
Probab=79.92 E-value=22 Score=26.43 Aligned_cols=57 Identities=18% Similarity=0.093 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 027395 104 KKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLN 160 (224)
Q Consensus 104 ~~e~L~~el~~L~~q~~~~~~~~r~~~ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK 160 (224)
.+|+|.+++.+|+-++..+.++++.-.+.+-..|+..+=+.+-.+...+|...-++|
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~K 65 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEK 65 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999988888888876654444467888888877777777666555444
No 13
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=71.87 E-value=12 Score=24.65 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=26.5
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 128 FYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNA 161 (224)
Q Consensus 128 ~~~ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~ 161 (224)
+.-|.+|+.+|++||..--..|+.-+.+++....
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999988888887777665443
No 14
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.69 E-value=48 Score=26.10 Aligned_cols=63 Identities=22% Similarity=0.200 Sum_probs=43.9
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 98 MLDLIKKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLL 164 (224)
Q Consensus 98 ~~~~~~~~e~L~~el~~L~~q~~~~~~~~r~~~ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~ll 164 (224)
+.++...+..|+.++..++.++..+...+..+. ..+|.+||...-.+|..-+..+.+|-..+-
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~----~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLS----SEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555667777777777777777766665554 346889999888888887777777766653
No 15
>PRK04098 sec-independent translocase; Provisional
Probab=70.38 E-value=6.6 Score=31.06 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=44.9
Q ss_pred ceEEEeecCCCCccccccchhhhhHHhhhhcccCCCCCcchhHHHHHhhhccccchhhHhhhhHHHHHHHHHHHHHHHHH
Q 027395 42 DVGLLMFSPSGKLTKYSSSRRIEDIFLRFICDEKQEPLENEDHLYRSLVHSKCEGEMLDLIKKKEELEKKLIELCERQFD 121 (224)
Q Consensus 42 ~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~~~~~~~~~~~~l~~~l~kLk~e~~~~~~~~~~e~L~~el~~L~~q~~~ 121 (224)
=||||||+|. ||-.... .+-..+..|++.... +..++ ..+. .+.+++++..+.++.++.
T Consensus 14 vVaLlvfGP~-KLP~~~r--~lGk~ir~~K~~~~~--------~k~~l---~~Ei-------~~~elk~e~~k~k~~l~~ 72 (158)
T PRK04098 14 VVAIIFLGPD-KLPQAMV--DIAKFFKAVKKTIND--------AKSTL---DKEI-------NIEEIKEEALKYKKEFES 72 (158)
T ss_pred HHHHhhcCch-HHHHHHH--HHHHHHHHHHHHHHH--------HHHHH---HHHH-------hhHHHHHHHHHHHHHHHH
Confidence 3788999984 5555522 466666666655211 11111 1111 234566666666666666
Q ss_pred HHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 027395 122 AEEKMSFYQPKVEDITTIHEAVDHEKFLNS 151 (224)
Q Consensus 122 ~~~~~r~~~ge~l~~lSl~EL~~LE~~Le~ 151 (224)
....++. .+++++|.+.-..+..
T Consensus 73 ~~~~l~~-------~~~~eel~~~~~~~~~ 95 (158)
T PRK04098 73 AVESLKK-------KLKFEELDDLKITAEN 95 (158)
T ss_pred HHHHHHh-------ccChHHHHHHhhhhhh
Confidence 6555442 2678888887555544
No 16
>PHA03162 hypothetical protein; Provisional
Probab=68.69 E-value=50 Score=25.24 Aligned_cols=57 Identities=14% Similarity=0.038 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 027395 104 KKEELEKKLIELCERQFDAEEKMSFYQPKV----EDITTIHEAVDHEKFLNSAIRRVEKLN 160 (224)
Q Consensus 104 ~~e~L~~el~~L~~q~~~~~~~~r~~~ge~----l~~lSl~EL~~LE~~Le~~L~~Ir~rK 160 (224)
.+|+|.+++.+|+-++..+.++++.-.+.+ -..|+..+=+.+-.+....|...-.+|
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kK 74 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKK 74 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888999999888888888886654433 234777777777666666665555544
No 17
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=68.12 E-value=49 Score=24.87 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 027395 104 KKEELEKKLIELCERQFDAEEKMSFYQP----KVEDITTIHEAVDHEKFLNSAIRRVEKLN 160 (224)
Q Consensus 104 ~~e~L~~el~~L~~q~~~~~~~~r~~~g----e~l~~lSl~EL~~LE~~Le~~L~~Ir~rK 160 (224)
.+|+|.+++.+|+-++..+.++++.-.| .+-..||..+=+.+-.+...+|...-.+|
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~K 64 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKK 64 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999888888888877664 44456788877777666666665555444
No 18
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=65.53 E-value=40 Score=25.97 Aligned_cols=11 Identities=18% Similarity=0.377 Sum_probs=6.9
Q ss_pred ecCCCCccccc
Q 027395 48 FSPSGKLTKYS 58 (224)
Q Consensus 48 fS~~Gkl~~f~ 58 (224)
|.+.|.++.+.
T Consensus 16 ~~~~~~~~~~~ 26 (151)
T PF11559_consen 16 YPSDGLLFDSA 26 (151)
T ss_pred CCCCCccCccc
Confidence 55666666665
No 19
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=62.86 E-value=34 Score=29.07 Aligned_cols=57 Identities=11% Similarity=0.092 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 027395 103 KKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLN 160 (224)
Q Consensus 103 ~~~e~L~~el~~L~~q~~~~~~~~r~~~ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK 160 (224)
.....|...+..+...+..+-..+..+.+ ....++-.+|...-...+..|..||.|-
T Consensus 87 ~~a~~L~~~i~~l~~~i~~l~~~~~~l~~-~~~~~~~~~l~~~l~ea~~mL~emr~r~ 143 (264)
T PF06008_consen 87 QRAQDLEQFIQNLQDNIQELIEQVESLNE-NGDQLPSEDLQRALAEAQRMLEEMRKRD 143 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ccCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556666666676666666666655654 4556788999999999999999999984
No 20
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=59.88 E-value=91 Score=25.12 Aligned_cols=57 Identities=12% Similarity=0.087 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 104 KKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNA 161 (224)
Q Consensus 104 ~~e~L~~el~~L~~q~~~~~~~~r~~~ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~ 161 (224)
.++++++++..|++......+++..+. ......+.+|-.+.+..-+.....-|.||.
T Consensus 117 t~eemQe~i~~L~kev~~~~erl~~~k-~g~~~vtpedk~~v~~~y~~~~~~wrk~kr 173 (201)
T KOG4603|consen 117 TTEEMQEEIQELKKEVAGYRERLKNIK-AGTNHVTPEDKEQVYREYQKYCKEWRKRKR 173 (201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667677666666655554443 344556778888888888887777777776
No 21
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=58.91 E-value=3.4 Score=28.54 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=28.5
Q ss_pred ccceecccccchhhhh---------hhhhhccCCceEEEeecCCCC
Q 027395 17 LQVTYTKRRDGIVKKA---------KELSVLCDTDVGLLMFSPSGK 53 (224)
Q Consensus 17 RqvTFsKRr~GL~KKA---------~ELsvLCda~ValiifS~~Gk 53 (224)
+-+-||+-|++|..|. .|+.+-||.|.-++..-|.|.
T Consensus 18 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 18 RATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp B-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred cEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 3445788888887775 599999999999999999886
No 22
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=57.86 E-value=11 Score=27.88 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=26.5
Q ss_pred hhhhhhccCCceEEEeecCCCCccccccc--hhhhhHHhhh
Q 027395 32 AKELSVLCDTDVGLLMFSPSGKLTKYSSS--RRIEDIFLRF 70 (224)
Q Consensus 32 A~ELsvLCda~ValiifS~~Gkl~~f~s~--~s~~~VleRY 70 (224)
-.+|-.|-||- |+..||+.|+|.+|-++ +.+-+++.++
T Consensus 3 l~~Lm~lpGv~-AAg~Fs~~G~l~e~~G~l~~~~a~m~A~m 42 (108)
T PF09941_consen 3 LDKLMKLPGVV-AAGEFSDDGKLVEYKGELDEEMAEMLAKM 42 (108)
T ss_pred HHHhhcCCCeE-EEEEECCCCeEEeeecCCCHHHHHHHHHH
Confidence 35677777774 55899999999999774 3344444444
No 23
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=57.62 E-value=27 Score=30.28 Aligned_cols=55 Identities=16% Similarity=0.099 Sum_probs=41.4
Q ss_pred cchhHHHHHhhhccccchhhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 027395 80 ENEDHLYRSLVHSKCEGEMLDLIKKKEELEKKLIELCERQFDAEEKMSFYQPKVEDI 136 (224)
Q Consensus 80 ~~~~~l~~~l~kLk~e~~~~~~~~~~e~L~~el~~L~~q~~~~~~~~r~~~ge~l~~ 136 (224)
+|.+.+...+.+++. .....+.++..|++++.+|+.++..+++.+..+||.+-++
T Consensus 131 vn~~~F~~rf~~Ied--~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~yWgkda~g 185 (308)
T PF06717_consen 131 VNDQDFNYRFNQIED--EYNRKKNKIPGLNKQISALDKQIVAINKKIDRYWGKDANG 185 (308)
T ss_pred ecchhHHHHHHHHHH--HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 344445555555543 2334567899999999999999999999999999988776
No 24
>PRK04654 sec-independent translocase; Provisional
Probab=55.91 E-value=12 Score=31.06 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=14.1
Q ss_pred eEEEeecCCCCccccccchhhhhHHhhhhc
Q 027395 43 VGLLMFSPSGKLTKYSSSRRIEDIFLRFIC 72 (224)
Q Consensus 43 ValiifS~~Gkl~~f~s~~s~~~VleRY~~ 72 (224)
||||||.|. ||=... ..+-..+.+|++
T Consensus 15 VALlV~GPe-rLPe~a--RtlGk~irk~R~ 41 (214)
T PRK04654 15 VALVVLGPE-RLPKAA--RFAGLWVRRARM 41 (214)
T ss_pred HHHHhcCch-HHHHHH--HHHHHHHHHHHH
Confidence 678888874 333331 134445555543
No 25
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=53.24 E-value=14 Score=25.64 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=26.7
Q ss_pred ceEEEeecCCC--CccccccchhhhhHHhhhhcc
Q 027395 42 DVGLLMFSPSG--KLTKYSSSRRIEDIFLRFICD 73 (224)
Q Consensus 42 ~ValiifS~~G--kl~~f~s~~s~~~VleRY~~~ 73 (224)
.+-|+|++..| |++.++.+...+.++.+|...
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~Tp 41 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCTP 41 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccCc
Confidence 46789999998 688887666899999999865
No 26
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=53.02 E-value=10 Score=28.11 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=28.5
Q ss_pred cceecccccchhhh---------hhhhhhccCCceEEEeecCCCCcc
Q 027395 18 QVTYTKRRDGIVKK---------AKELSVLCDTDVGLLMFSPSGKLT 55 (224)
Q Consensus 18 qvTFsKRr~GL~KK---------A~ELsvLCda~ValiifS~~Gkl~ 55 (224)
..-||+=|.-|.+| +.|+.+-||.|+-+++..+.|.+.
T Consensus 51 ~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg~a 97 (111)
T COG0139 51 AHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGGPA 97 (111)
T ss_pred EEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCCCc
Confidence 34466666656665 569999999999999999976543
No 27
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=49.16 E-value=1.4e+02 Score=24.10 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 107 ELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKL 163 (224)
Q Consensus 107 ~L~~el~~L~~q~~~~~~~~r~~~ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~l 163 (224)
.|...++.|++.....+..++.+. ..||++|++.--+.|..-....|.|-..+
T Consensus 90 ~l~ek~q~l~~t~s~veaEik~L~----s~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 90 ALTEKVQSLQQTCSYVEAEIKELS----SALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443331 34799999999888888777777776554
No 28
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=47.16 E-value=18 Score=28.15 Aligned_cols=33 Identities=12% Similarity=0.268 Sum_probs=25.4
Q ss_pred CCceEEEeecCCCCccccccchhhhhHHhhhhcc
Q 027395 40 DTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICD 73 (224)
Q Consensus 40 da~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~ 73 (224)
...++-||+ ++|++.+|..+-.+.+|+..|=.+
T Consensus 14 ~~~~vkvv~-~~G~v~~~~~pv~a~evm~~~P~h 46 (181)
T PF14009_consen 14 SAATVKVVH-PDGKVEEFKRPVTAAEVMLENPGH 46 (181)
T ss_pred CCceEEEEc-CCCcEEEeCCCcCHHHHHHHCCCC
Confidence 455555555 789999997777899999998655
No 29
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=46.88 E-value=1.1e+02 Score=28.75 Aligned_cols=66 Identities=21% Similarity=0.219 Sum_probs=41.2
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 98 MLDLIKKKEELEKKLIELCERQFDAEEKMSFYQPK------------VEDITTIHEAVDHEKFLNSAIRRVEKLNAKL 163 (224)
Q Consensus 98 ~~~~~~~~e~L~~el~~L~~q~~~~~~~~r~~~ge------------~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~l 163 (224)
+.++.++++.++.++..++.++..++..+.++..- .....++.++.++-..+...+..++.+...+
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREA 150 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666677777777776666666554333211 1124578888888888877777777666543
No 30
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=43.34 E-value=24 Score=29.13 Aligned_cols=48 Identities=13% Similarity=0.242 Sum_probs=37.5
Q ss_pred ccchhhhh----hhhhhccCCceEEEeecCCC---CccccccchhhhhHHhhhhcc
Q 027395 25 RDGIVKKA----KELSVLCDTDVGLLMFSPSG---KLTKYSSSRRIEDIFLRFICD 73 (224)
Q Consensus 25 r~GL~KKA----~ELsvLCda~ValiifS~~G---kl~~f~s~~s~~~VleRY~~~ 73 (224)
++-|+.|- .|++|-+|-++.|++.+|+- ....|... .++.|+..|...
T Consensus 34 ~~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~-pL~~vv~~~~~~ 88 (214)
T PF10491_consen 34 QTRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAA-PLENVVRNLKPV 88 (214)
T ss_pred HHHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecch-hHHHHHHHHHHH
Confidence 34566665 59999999999999999873 45668444 599999999765
No 31
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.19 E-value=1.6e+02 Score=25.37 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027395 140 HEAVDHEKFLNSAIRRVEKLNAKLLQKESA 169 (224)
Q Consensus 140 ~EL~~LE~~Le~~L~~Ir~rK~~ll~~qi~ 169 (224)
.++..+++.+...-.+|++|++-+ ..+.-
T Consensus 80 ~eik~l~~eI~~~~~~I~~r~~~l-~~raR 108 (265)
T COG3883 80 AEIKKLQKEIAELKENIVERQELL-KKRAR 108 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 677788888888899999998765 45444
No 32
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=42.81 E-value=13 Score=31.03 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=18.6
Q ss_pred hhccCCceEEEeecCCCCcccc
Q 027395 36 SVLCDTDVGLLMFSPSGKLTKY 57 (224)
Q Consensus 36 svLCda~ValiifS~~Gkl~~f 57 (224)
||=.|-|.|.-+|||+|++|.-
T Consensus 3 sIGtGyDls~s~fSpdGrvfQv 24 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQV 24 (254)
T ss_pred cccccccccceeeCCCCceehH
Confidence 4557889999999999998874
No 33
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=41.50 E-value=27 Score=23.23 Aligned_cols=31 Identities=16% Similarity=0.397 Sum_probs=22.6
Q ss_pred cCCceEEEeecCCCCccccccchhhhhHHhhh
Q 027395 39 CDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRF 70 (224)
Q Consensus 39 Cda~ValiifS~~Gkl~~f~s~~s~~~VleRY 70 (224)
|+.--.++|. |.|.+|...++..+..|++.+
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~~~~~il~~~ 77 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPEDVEEIVEEL 77 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHHHHHHHHHhC
Confidence 5555555555 678888888887888888764
No 34
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=41.33 E-value=27 Score=25.29 Aligned_cols=29 Identities=34% Similarity=0.486 Sum_probs=21.6
Q ss_pred hhhhhhhccCCceEEEeecCCCCccccccc
Q 027395 31 KAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60 (224)
Q Consensus 31 KA~ELsvLCda~ValiifS~~Gkl~~f~s~ 60 (224)
|-.||--+-|| +|.=.|||+|||.+|-|+
T Consensus 4 kLdeLlqi~Gv-~AAGefs~DGkLv~Ykgd 32 (109)
T COG4831 4 KLDELLQIKGV-MAAGEFSPDGKLVEYKGD 32 (109)
T ss_pred hHHHHhCccce-eEeceeCCCCceEEeeCC
Confidence 45566666666 445789999999999775
No 35
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=41.29 E-value=15 Score=30.57 Aligned_cols=16 Identities=44% Similarity=0.696 Sum_probs=13.8
Q ss_pred CceEEEeecCCCCccc
Q 027395 41 TDVGLLMFSPSGKLTK 56 (224)
Q Consensus 41 a~ValiifS~~Gkl~~ 56 (224)
-|-|+-||||+|.|+.
T Consensus 4 ydraltvFSPDGhL~Q 19 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQ 19 (249)
T ss_pred cccceEEECCCCCEEe
Confidence 4678999999999876
No 36
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=39.54 E-value=26 Score=23.84 Aligned_cols=30 Identities=10% Similarity=0.311 Sum_probs=22.9
Q ss_pred ccCCceEEEeecCCCCccccccchhhhhHHhhh
Q 027395 38 LCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRF 70 (224)
Q Consensus 38 LCda~ValiifS~~Gkl~~f~s~~s~~~VleRY 70 (224)
.|+--.+++| .|.+|...++..+.+|++.|
T Consensus 51 ~C~~gP~v~v---~g~~y~~vt~~~i~~i~~~~ 80 (80)
T cd03064 51 ACDLAPVMMI---NDDVYGRLTPEKVDAILEAL 80 (80)
T ss_pred cCCCCCEEEE---CCEEECCCCHHHHHHHHHhC
Confidence 3776666676 38899888887888988765
No 37
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=37.91 E-value=1.4e+02 Score=20.93 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Q 027395 104 KKEELEKKLIELCERQFDAEEKMSF 128 (224)
Q Consensus 104 ~~e~L~~el~~L~~q~~~~~~~~r~ 128 (224)
.++.+...+..+..++..++..++.
T Consensus 77 ~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 77 EIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555443
No 38
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=37.69 E-value=60 Score=28.24 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=31.8
Q ss_pred eeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhhc
Q 027395 7 LMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFIC 72 (224)
Q Consensus 7 ~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~~ 72 (224)
.+..|.|.+.|..+=|+ .||..|.+ +.| .|-.+|.|++|++.|.+
T Consensus 25 n~~li~n~tqr~t~~sR-------------~L~Ecel~---~~p-----~Y~nDpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKSR-------------LLAEIQRP---KNP-----HYHNDPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccce-------------ehhhhccc---cCC-----CCCCcHHHHHHHHHHhH
Confidence 35678888877766332 57777764 343 36578999999999975
No 39
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=36.21 E-value=2.2e+02 Score=22.64 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 137 TTIHEAVDHEKFLNSAIRRVEKLNAK 162 (224)
Q Consensus 137 lSl~EL~~LE~~Le~~L~~Ir~rK~~ 162 (224)
.+-.++.++-+.+++.|..||+.-..
T Consensus 135 v~~~~i~e~IKd~de~L~~I~d~iK~ 160 (163)
T PF03233_consen 135 VTEKLIEELIKDFDERLKEIRDKIKK 160 (163)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35578888889999999999876544
No 40
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=35.81 E-value=98 Score=22.73 Aligned_cols=17 Identities=6% Similarity=-0.103 Sum_probs=13.7
Q ss_pred CCCCCHHHHHHHHHHHH
Q 027395 134 EDITTIHEAVDHEKFLN 150 (224)
Q Consensus 134 l~~lSl~EL~~LE~~Le 150 (224)
++.||.+|++.|..+++
T Consensus 87 le~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 87 LEELSPEELEALQAEIE 103 (104)
T ss_pred HHhCCHHHHHHHHHHhc
Confidence 45689999999987765
No 41
>PRK09039 hypothetical protein; Validated
Probab=35.53 E-value=1.6e+02 Score=26.13 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 027395 140 HEAVDHEKFLNSAIRR 155 (224)
Q Consensus 140 ~EL~~LE~~Le~~L~~ 155 (224)
..+..|+..|+.++..
T Consensus 172 ~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 172 AKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555666666666543
No 42
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=34.86 E-value=2.3e+02 Score=22.37 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 106 EELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAK 162 (224)
Q Consensus 106 e~L~~el~~L~~q~~~~~~~~r~~~ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~ 162 (224)
+.++-....++.++..++..++... +--++|.+-|-.+|.-.-.....+|.+|-..
T Consensus 9 ~~~Rl~~~~lk~~l~k~~~ql~~ke-~lge~L~~iDFeqLkien~~l~~kIeERn~e 64 (177)
T PF13870_consen 9 SKLRLKNITLKHQLAKLEEQLRQKE-ELGEGLHLIDFEQLKIENQQLNEKIEERNKE 64 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555544444432 1123345544444444433444444444433
No 43
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=34.18 E-value=2.3e+02 Score=26.28 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCC---------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 103 KKKEELEKKLIELCERQFDAEEKMSFYQP---------------------KVEDITTIHEAVDHEKFLNSAIRRVEKLNA 161 (224)
Q Consensus 103 ~~~e~L~~el~~L~~q~~~~~~~~r~~~g---------------------e~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~ 161 (224)
.+++.|+++++.|++++..++..+..... +.--.++-+++.++.+++.+.--+|...++
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~~~~qqiAn~~lKv~~l~d 104 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDATEMRQQIANAQLKVESLED 104 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHHHHHHHHHhhhhhHHHHhh
Confidence 35667777777777777777766422110 012247789999999998887666666665
Q ss_pred HH
Q 027395 162 KL 163 (224)
Q Consensus 162 ~l 163 (224)
..
T Consensus 105 a~ 106 (514)
T PF11336_consen 105 AA 106 (514)
T ss_pred HH
Confidence 54
No 44
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.78 E-value=97 Score=20.57 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 027395 102 IKKKEELEKKLIELCERQFDAEEKMSF 128 (224)
Q Consensus 102 ~~~~e~L~~el~~L~~q~~~~~~~~r~ 128 (224)
+.++..++.++..++.+++.++..+..
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544433
No 45
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=33.39 E-value=30 Score=29.92 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=25.1
Q ss_pred cceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchh
Q 027395 18 QVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRR 62 (224)
Q Consensus 18 qvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s 62 (224)
.+||.+|. ||+ +=-++.++++.+ .||.|.|+|...
T Consensus 209 ~~tl~~~~-GLL-------lPG~p~~Gv~~~--~~k~y~F~s~~a 243 (281)
T PF12018_consen 209 PWTLAERD-GLL-------LPGNPSIGVLKY--KDKYYAFSSREA 243 (281)
T ss_pred eEEEeccC-cee-------ecCCCccceeEE--cCEEEEeCCHHH
Confidence 46777774 755 344678888888 789999977643
No 46
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=33.24 E-value=30 Score=26.66 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=21.3
Q ss_pred hhhhccCCceEEEeecCCCCccccc
Q 027395 34 ELSVLCDTDVGLLMFSPSGKLTKYS 58 (224)
Q Consensus 34 ELsvLCda~ValiifS~~Gkl~~f~ 58 (224)
=+.++|||||-+++-+.+.+-..||
T Consensus 58 L~tt~~dadvi~~v~~and~~s~f~ 82 (148)
T COG4917 58 LITTLQDADVIIYVHAANDPESRFP 82 (148)
T ss_pred HHHHhhccceeeeeecccCccccCC
Confidence 3678999999999999998877773
No 47
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=32.18 E-value=3.2e+02 Score=23.25 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027395 140 HEAVDHEKFLNSAIRRVEKLNAKLLQKESA 169 (224)
Q Consensus 140 ~EL~~LE~~Le~~L~~Ir~rK~~ll~~qi~ 169 (224)
+||..|++.|.+.+ +.-+.||..+.+
T Consensus 26 eEllkLe~DLkEvI----sLTedLlqT~~e 51 (262)
T KOG3026|consen 26 EELLKLEKDLKEVI----SLTEDLLQTQKE 51 (262)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHhhhh
Confidence 89999988877654 445556655443
No 48
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=31.58 E-value=3.1e+02 Score=23.00 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=33.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 100 DLIKKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAK 162 (224)
Q Consensus 100 ~~~~~~e~L~~el~~L~~q~~~~~~~~r~~~ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~ 162 (224)
+...++-+++..+..++.+.+.+..-+.. .-+++|+..+|..|.+.-..|..-+.+
T Consensus 129 DvT~~y~D~~arl~~l~~~~~rl~~ll~k-------a~~~~d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 129 DVTEQYVDLEARLKNLEAEEERLLELLEK-------AKTVEDLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666655555443321 128999999998887755555544443
No 49
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=31.38 E-value=42 Score=19.09 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=14.5
Q ss_pred CceEEEeecCCCCccccccc
Q 027395 41 TDVGLLMFSPSGKLTKYSSS 60 (224)
Q Consensus 41 a~ValiifS~~Gkl~~f~s~ 60 (224)
..-.-..|||+|+-..|+|.
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEE
T ss_pred ccccCEEEecCCCEEEEEec
Confidence 34556899999998888664
No 50
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=31.32 E-value=35 Score=32.94 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=24.8
Q ss_pred hhccCCceEEEeecCCCCccccccchhhhhHHh
Q 027395 36 SVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFL 68 (224)
Q Consensus 36 svLCda~ValiifS~~Gkl~~f~s~~s~~~Vle 68 (224)
|||.|+-++||.|.+.|+++.| +++.+.++.
T Consensus 374 ~VLsgvtaGVi~~d~~g~i~t~--N~~ae~~l~ 404 (712)
T COG5000 374 AVLSGLTAGVIGFDNRGCITTV--NPSAEQILG 404 (712)
T ss_pred HHHhcCceeEEEEcCCCeeEee--cchHHHHhc
Confidence 6999999999999999999997 234454443
No 51
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=30.66 E-value=48 Score=18.77 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=16.8
Q ss_pred hhhhccCCceEEEeecCCCCcccc
Q 027395 34 ELSVLCDTDVGLLMFSPSGKLTKY 57 (224)
Q Consensus 34 ELsvLCda~ValiifS~~Gkl~~f 57 (224)
.|+--||+-|-+-||...|.+-.|
T Consensus 2 hlcpkcgvgvl~pvy~~kgeikvf 25 (36)
T PF09151_consen 2 HLCPKCGVGVLEPVYNQKGEIKVF 25 (36)
T ss_dssp -B-TTTSSSBEEEEE-TTS-EEEE
T ss_pred ccCCccCceEEEEeecCCCcEEEE
Confidence 367789999999999999965444
No 52
>PRK01919 tatB sec-independent translocase; Provisional
Probab=29.99 E-value=1.5e+02 Score=23.74 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=14.5
Q ss_pred eEEEeecCCCCccccccchhhhhHHhhhhcc
Q 027395 43 VGLLMFSPSGKLTKYSSSRRIEDIFLRFICD 73 (224)
Q Consensus 43 ValiifS~~Gkl~~f~s~~s~~~VleRY~~~ 73 (224)
||||||.|.-=| ... -.+-..+-+++++
T Consensus 15 VALiV~GPekLP-~~a--RtlGk~i~k~Rr~ 42 (169)
T PRK01919 15 VALVVIGPERLP-RVA--RTAGALFGRAQRY 42 (169)
T ss_pred HHHheeCchHhH-HHH--HHHHHHHHHHHHH
Confidence 788888884322 221 1344455555444
No 53
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=28.99 E-value=34 Score=28.43 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=15.6
Q ss_pred cCCceEEEeecCCCCcccc
Q 027395 39 CDTDVGLLMFSPSGKLTKY 57 (224)
Q Consensus 39 Cda~ValiifS~~Gkl~~f 57 (224)
.|-|--+.||||.|+||.-
T Consensus 7 agfDrhitIFspeGrLyQV 25 (246)
T KOG0182|consen 7 AGFDRHITIFSPEGRLYQV 25 (246)
T ss_pred CCccceEEEECCCceEEee
Confidence 4567778999999999873
No 54
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=28.76 E-value=1.6e+02 Score=23.69 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=10.6
Q ss_pred ccCCceEEEeecCC
Q 027395 38 LCDTDVGLLMFSPS 51 (224)
Q Consensus 38 LCda~ValiifS~~ 51 (224)
..||..|+|||-|+
T Consensus 10 ~~~~k~C~IC~Kps 23 (182)
T PF08432_consen 10 ETDAKACFICYKPS 23 (182)
T ss_pred cCCCCceeEecCCC
Confidence 45788888888776
No 55
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=28.70 E-value=23 Score=25.93 Aligned_cols=53 Identities=19% Similarity=0.385 Sum_probs=36.0
Q ss_pred cceeEEe-cCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhhcc
Q 027395 5 KLLMQKI-DNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICD 73 (224)
Q Consensus 5 Ki~ik~I-en~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~ 73 (224)
++++|-+ +|.++=.|+|.||-.|+-+ +=....|.+-.| +..-.+.+++.|.+.
T Consensus 19 ~ie~K~~~~~RSN~~i~f~KRt~Girq---------------fEi~n~G~~RI~-gYk~se~~~~~f~sl 72 (103)
T PF09158_consen 19 KIEVKEIVIDRSNYEIRFKKRTKGIRQ---------------FEIRNKGEFRIF-GYKMSEEIIKKFTSL 72 (103)
T ss_dssp T--EEEEEEETTEEEEEEEEEETTEEE---------------EEEETTSEEEEE-EES--HHHHHHHHHT
T ss_pred ceeeeeeEeeccceEEeeecccCceeE---------------EEEecCCcEEEE-EEcCCHHHHHHHHhc
Confidence 4677776 7888899999999999643 445567765555 333468888988776
No 56
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=27.99 E-value=52 Score=20.39 Aligned_cols=26 Identities=15% Similarity=0.475 Sum_probs=20.7
Q ss_pred EEeecCCCCccccccchhhhhHHhhh
Q 027395 45 LLMFSPSGKLTKYSSSRRIEDIFLRF 70 (224)
Q Consensus 45 liifS~~Gkl~~f~s~~s~~~VleRY 70 (224)
+.||-|+|..+.|+.+.++.++++..
T Consensus 1 ~~~~~~~g~~~~~~~~~t~~~~~~~~ 26 (60)
T cd01668 1 IYVFTPKGEIIELPAGATVLDFAYAI 26 (60)
T ss_pred CEEECCCCCEEEcCCCCCHHHHHHHH
Confidence 36899999999998776788877654
No 57
>COG3411 Ferredoxin [Energy production and conversion]
Probab=27.73 E-value=51 Score=21.98 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=24.9
Q ss_pred EEEeecCCCCccccccchhhhhHHhhhhcc
Q 027395 44 GLLMFSPSGKLTKYSSSRRIEDIFLRFICD 73 (224)
Q Consensus 44 aliifS~~Gkl~~f~s~~s~~~VleRY~~~ 73 (224)
.++++.|.|-.|..-+++.+++|++.-...
T Consensus 18 Pvl~vYpegvWY~~V~p~~a~rIv~~hl~~ 47 (64)
T COG3411 18 PVLVVYPEGVWYTRVDPEDARRIVQSHLLG 47 (64)
T ss_pred CEEEEecCCeeEeccCHHHHHHHHHHHHhC
Confidence 478889999999998888899999877643
No 58
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=26.82 E-value=1.4e+02 Score=19.96 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=16.3
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 027395 98 MLDLIKKKEELEKKLIELCERQFDAEEKMSFY 129 (224)
Q Consensus 98 ~~~~~~~~e~L~~el~~L~~q~~~~~~~~r~~ 129 (224)
+.++|..+-..++++..|+.++..+..+++.+
T Consensus 20 ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555555566666666666665555443
No 59
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=26.58 E-value=2.6e+02 Score=20.50 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 106 EELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKL 163 (224)
Q Consensus 106 e~L~~el~~L~~q~~~~~~~~r~~~ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~l 163 (224)
+++..++..|-..++.+... + ...+-+|+.++...++..|.+.|.|-...
T Consensus 11 ~~l~~el~~L~d~lEevL~s----s----g~~a~~e~~~lR~r~~~~Lk~~r~rl~~~ 60 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKS----S----GSLAGDEAEELRSKAESALKEARDRLGDT 60 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHh----c----ccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555444444222 2 23466888888888888888887776554
No 60
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.24 E-value=1.8e+02 Score=19.73 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 027395 108 LEKKLIELCER 118 (224)
Q Consensus 108 L~~el~~L~~q 118 (224)
|+-|+..|+++
T Consensus 23 LQmEieELKEk 33 (79)
T COG3074 23 LQMEIEELKEK 33 (79)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 61
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=25.45 E-value=47 Score=25.80 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=24.9
Q ss_pred hhhccCCceEEEeecCCCCccccccchhhhhHHh
Q 027395 35 LSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFL 68 (224)
Q Consensus 35 LsvLCda~ValiifS~~Gkl~~f~s~~s~~~Vle 68 (224)
+++-||||+-+++.+.+.....|| |....++.
T Consensus 58 i~ta~dad~V~ll~dat~~~~~~p--P~fa~~f~ 89 (143)
T PF10662_consen 58 IVTAQDADVVLLLQDATEPRSVFP--PGFASMFN 89 (143)
T ss_pred HHHHhhCCEEEEEecCCCCCccCC--chhhcccC
Confidence 678899999999999998877783 44555543
No 62
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.88 E-value=6.4e+02 Score=24.79 Aligned_cols=64 Identities=17% Similarity=0.101 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhc------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 102 IKKKEELEKKLIELCERQFDAEEKMSFY------QPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLLQ 165 (224)
Q Consensus 102 ~~~~e~L~~el~~L~~q~~~~~~~~r~~------~ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~ll~ 165 (224)
.++..+-..++..+..|++.+-..+--. .--+..++|++.|.++...|...-...+.|.++++.
T Consensus 116 r~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~ 185 (660)
T KOG4302|consen 116 RKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLE 185 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555554433211 112445689999999999999988888888877653
No 63
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=24.79 E-value=75 Score=22.67 Aligned_cols=36 Identities=6% Similarity=-0.043 Sum_probs=29.0
Q ss_pred ccCCceEEEeecCCC-CccccccchhhhhHHhhhhcc
Q 027395 38 LCDTDVGLLMFSPSG-KLTKYSSSRRIEDIFLRFICD 73 (224)
Q Consensus 38 LCda~ValiifS~~G-kl~~f~s~~s~~~VleRY~~~ 73 (224)
+|..+--|.|+-|.| -+|...++..+.+|++.+...
T Consensus 44 ~C~~ePlV~V~~p~g~v~Y~~V~~edv~~Iv~~~~~~ 80 (92)
T cd03063 44 MYWLEPLVEVETPGGRVAYGPVTPADVASLLDAGALE 80 (92)
T ss_pred ecCCCCEEEEEeCCCcEEEEeCCHHHHHHHHHHHhhc
Confidence 688888888887888 677777777899999998653
No 64
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=24.69 E-value=47 Score=30.26 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=40.8
Q ss_pred eEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccch
Q 027395 8 MQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSR 61 (224)
Q Consensus 8 ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~ 61 (224)
|+++-+...-..||..|+.| ||+.+|+..+-+.+|-...-...|+.+.
T Consensus 18 i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 65 (412)
T COG5068 18 IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNEE 65 (412)
T ss_pred cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCcc
Confidence 77888888888999999999 9999999999988888777667775553
No 65
>PTZ00046 rifin; Provisional
Probab=24.60 E-value=68 Score=28.82 Aligned_cols=30 Identities=17% Similarity=0.553 Sum_probs=22.1
Q ss_pred hhccCCceEEEeecCCCCccccccchhhhhHHhhhhccc
Q 027395 36 SVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICDE 74 (224)
Q Consensus 36 svLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~~ 74 (224)
-+||.-|+ |+| -|=++|.|++|.+.|.+..
T Consensus 39 R~LcECeL----Y~p-----nYDNDPeMK~Vme~F~rqT 68 (358)
T PTZ00046 39 RLLCECEL----YSS-----NYDNDPEMKSVMENFDRQT 68 (358)
T ss_pred hhhhhhhc----CCC-----CCCCcHHHHHHHHHHhHHH
Confidence 36777765 554 2556889999999998774
No 66
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=24.39 E-value=1.5e+02 Score=18.60 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=11.6
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q 027395 132 KVEDITTIHEAVDHEKFLNS 151 (224)
Q Consensus 132 e~l~~lSl~EL~~LE~~Le~ 151 (224)
+.|..+|++||++.-..|+.
T Consensus 3 ~fLk~ls~~eL~~rl~~LD~ 22 (49)
T PF11629_consen 3 EFLKFLSYEELQQRLASLDP 22 (49)
T ss_dssp GGGGGS-HHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHhCCH
Confidence 34567788888765444443
No 67
>PRK00051 hisI phosphoribosyl-AMP cyclohydrolase; Reviewed
Probab=24.29 E-value=48 Score=25.19 Aligned_cols=36 Identities=25% Similarity=0.451 Sum_probs=28.8
Q ss_pred ccce-ecccccchhhhh---------hhhhhccCCceEEEeecCCC
Q 027395 17 LQVT-YTKRRDGIVKKA---------KELSVLCDTDVGLLMFSPSG 52 (224)
Q Consensus 17 RqvT-FsKRr~GL~KKA---------~ELsvLCda~ValiifS~~G 52 (224)
..++ ||+=|++|..|- .|+.+-||.|.-++...+.|
T Consensus 45 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~Ll~~V~q~G 90 (125)
T PRK00051 45 GRAHYWSRSRQKLWRKGETSGHVQKVHEVRLDCDGDAVLLKVEQVG 90 (125)
T ss_pred CcEEEEeCccCcccCCCCCcCCeEEEEEEEecCCCCEEEEEEEecC
Confidence 4455 566688887765 49999999999999998887
No 68
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=23.92 E-value=1.8e+02 Score=21.17 Aligned_cols=31 Identities=6% Similarity=-0.027 Sum_probs=19.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 027395 100 DLIKKKEELEKKLIELCERQFDAEEKMSFYQ 130 (224)
Q Consensus 100 ~~~~~~e~L~~el~~L~~q~~~~~~~~r~~~ 130 (224)
++.++++.+++++.+++.+++.+...+..+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666777777777777777666654443
No 69
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=23.50 E-value=1.7e+02 Score=18.14 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=9.9
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 027395 101 LIKKKEELEKKLIELCER 118 (224)
Q Consensus 101 ~~~~~e~L~~el~~L~~q 118 (224)
+.++++.|+.+++.|+.-
T Consensus 4 LrqQv~aL~~qv~~Lq~~ 21 (46)
T PF09006_consen 4 LRQQVEALQGQVQRLQAA 21 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555666655555443
No 70
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=23.46 E-value=2e+02 Score=23.19 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027395 140 HEAVDHEKFLNSAIRRVE 157 (224)
Q Consensus 140 ~EL~~LE~~Le~~L~~Ir 157 (224)
.||++||.+|++.+..|+
T Consensus 159 qElqELE~QL~DRl~~l~ 176 (179)
T PF14723_consen 159 QELQELEFQLEDRLLQLR 176 (179)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666665554
No 71
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=23.44 E-value=41 Score=20.46 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=15.7
Q ss_pred cCCce---EEEeecCCCCccccccch
Q 027395 39 CDTDV---GLLMFSPSGKLTKYSSSR 61 (224)
Q Consensus 39 Cda~V---aliifS~~Gkl~~f~s~~ 61 (224)
||..| +-.-..=.|+.|.|+|..
T Consensus 6 cg~~v~~~~~~~~~y~G~~Y~FCS~~ 31 (47)
T PF04945_consen 6 CGMKVPGNAAYSVEYNGRTYYFCSEG 31 (47)
T ss_dssp GG-BE-----EEEEETTEEEEESSHH
T ss_pred CCCEEccCccEEEEECCEEEEEcCHH
Confidence 67777 666666779999999864
No 72
>PRK04406 hypothetical protein; Provisional
Probab=23.40 E-value=2.5e+02 Score=19.15 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=12.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 027395 100 DLIKKKEELEKKLIELCERQFDAEEKM 126 (224)
Q Consensus 100 ~~~~~~e~L~~el~~L~~q~~~~~~~~ 126 (224)
++|..+-..++++..|+.++..+..++
T Consensus 29 ~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 29 ELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555544444444333
No 73
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=22.79 E-value=4.7e+02 Score=22.14 Aligned_cols=10 Identities=10% Similarity=-0.296 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 027395 139 IHEAVDHEKF 148 (224)
Q Consensus 139 l~EL~~LE~~ 148 (224)
..++..|...
T Consensus 88 ~~e~~aL~~E 97 (239)
T COG1579 88 ERELRALNIE 97 (239)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 74
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=22.51 E-value=32 Score=28.45 Aligned_cols=13 Identities=62% Similarity=0.943 Sum_probs=10.9
Q ss_pred EEEeecCCCCccc
Q 027395 44 GLLMFSPSGKLTK 56 (224)
Q Consensus 44 aliifS~~Gkl~~ 56 (224)
.+-+|||+|++|.
T Consensus 4 ~~t~fsp~Grl~Q 16 (227)
T cd03750 4 SLTTFSPSGKLVQ 16 (227)
T ss_pred CCceECCCCeEhH
Confidence 4568999999986
No 75
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=22.20 E-value=3e+02 Score=23.75 Aligned_cols=16 Identities=38% Similarity=0.312 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 027395 108 LEKKLIELCERQFDAE 123 (224)
Q Consensus 108 L~~el~~L~~q~~~~~ 123 (224)
+++-+++|++.++.++
T Consensus 110 l~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 110 LRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHhccHHH
Confidence 3334444444444443
No 76
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.80 E-value=2e+02 Score=17.57 Aligned_cols=21 Identities=10% Similarity=-0.002 Sum_probs=8.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 027395 102 IKKKEELEKKLIELCERQFDA 122 (224)
Q Consensus 102 ~~~~e~L~~el~~L~~q~~~~ 122 (224)
...++.|..+...|..+++.+
T Consensus 11 K~~yd~Lk~~~~~L~~E~~~L 31 (45)
T PF02183_consen 11 KASYDSLKAEYDSLKKENEKL 31 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 77
>PRK00846 hypothetical protein; Provisional
Probab=21.77 E-value=2.8e+02 Score=19.14 Aligned_cols=27 Identities=11% Similarity=-0.049 Sum_probs=12.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 027395 100 DLIKKKEELEKKLIELCERQFDAEEKM 126 (224)
Q Consensus 100 ~~~~~~e~L~~el~~L~~q~~~~~~~~ 126 (224)
++|..+-..++.+..|+.++..+..++
T Consensus 31 ~LN~~v~~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 31 ELSEALADARLTGARNAELIRHLLEDL 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 78
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=21.72 E-value=1.4e+02 Score=26.97 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027395 140 HEAVDHEKFLNSAIRRVEKLNAKLLQKESA 169 (224)
Q Consensus 140 ~EL~~LE~~Le~~L~~Ir~rK~~ll~~qi~ 169 (224)
-|..+||.+|-.+..-+-++|.++.+.|+.
T Consensus 186 ~di~~lErrL~qtmdmiisKKkk~a~~~l~ 215 (462)
T KOG2417|consen 186 TDIIQLERRLAQTMDMIISKKKKMAMAQLE 215 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999864
No 79
>PRK00295 hypothetical protein; Provisional
Probab=21.43 E-value=2.2e+02 Score=18.97 Aligned_cols=22 Identities=14% Similarity=-0.047 Sum_probs=8.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 027395 101 LIKKKEELEKKLIELCERQFDA 122 (224)
Q Consensus 101 ~~~~~e~L~~el~~L~~q~~~~ 122 (224)
+|..+-..++++..|+.++..+
T Consensus 24 Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 24 LNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333343333333333
No 80
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=21.43 E-value=3.5e+02 Score=20.07 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHH
Q 027395 103 KKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEK 147 (224)
Q Consensus 103 ~~~e~L~~el~~L~~q~~~~~~~~r~~~ge~l~~lSl~EL~~LE~ 147 (224)
..+|-|+.++..|..++..++...+.+. ...|.+.|.++..
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk----~~~spe~L~ql~~ 107 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLK----TLASPEQLAQLPA 107 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCCHHHHHHHHH
Confidence 3444444444444444444444333322 1234555555433
No 81
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=21.33 E-value=29 Score=24.30 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=19.7
Q ss_pred hhhhhhccCCceEEEeecCCCCccc
Q 027395 32 AKELSVLCDTDVGLLMFSPSGKLTK 56 (224)
Q Consensus 32 A~ELsvLCda~ValiifS~~Gkl~~ 56 (224)
+.-++|-||.+=|++-+|.+|.+|-
T Consensus 16 ~tS~~Vs~~~~gs~ValS~dg~l~G 40 (81)
T PF03785_consen 16 QTSISVSCDVPGSYVALSQDGDLYG 40 (81)
T ss_dssp -SEEEEEESSTT-EEEEEETTEEEE
T ss_pred ccEEEEEecCCCcEEEEecCCEEEE
Confidence 4567899999999999999998763
No 82
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=21.12 E-value=29 Score=22.96 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=21.3
Q ss_pred ccccchhhhhhhhhhccC-CceEEEeecCCCCc
Q 027395 23 KRRDGIVKKAKELSVLCD-TDVGLLMFSPSGKL 54 (224)
Q Consensus 23 KRr~GL~KKA~ELsvLCd-a~ValiifS~~Gkl 54 (224)
.||.|.+.+ |.|+-+| .+=.+-|+|..|++
T Consensus 24 ~RR~g~i~~--~vsi~~~~~~~ei~I~tD~GR~ 54 (63)
T PF04566_consen 24 LRRSGKISK--EVSIVYDIREKEIRINTDAGRL 54 (63)
T ss_dssp HHHTTSS-T--TSEEEEETTTTEEEEE-SSCEE
T ss_pred HhhccCCcc--eeEEEEeccCCEEEEEccCCcc
Confidence 578886555 8888885 57788889988864
No 83
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=21.05 E-value=1.5e+02 Score=23.16 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=21.2
Q ss_pred chhhhhhhhhhccCCceEEEeecCCC
Q 027395 27 GIVKKAKELSVLCDTDVGLLMFSPSG 52 (224)
Q Consensus 27 GL~KKA~ELsvLCda~ValiifS~~G 52 (224)
-|+++|.+++--=++..+|+.|+|.-
T Consensus 23 ~Li~~~~~~a~~~~~~~~v~tF~~~P 48 (157)
T PF06574_consen 23 KLIKKAVEIAKEKGLKSVVLTFDPHP 48 (157)
T ss_dssp HHHHHHHHHHHHCT-EEEEEEESS-C
T ss_pred HHHHHHhhhhhhcccceEEEEcccCH
Confidence 37899999998889999999999864
No 84
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=20.98 E-value=5.7e+02 Score=22.38 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=21.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 133 VEDITTIHEAVDHEKFLNSAIRRVEKLNAKL 163 (224)
Q Consensus 133 ~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~l 163 (224)
.++.+..++|..+...|...-..|..+|..+
T Consensus 202 e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l 232 (325)
T PF08317_consen 202 EIESCDQEELEALRQELAEQKEEIEAKKKEL 232 (325)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888888777666666555443
No 85
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.66 E-value=5.9e+02 Score=22.40 Aligned_cols=32 Identities=13% Similarity=-0.011 Sum_probs=22.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 132 KVEDITTIHEAVDHEKFLNSAIRRVEKLNAKL 163 (224)
Q Consensus 132 e~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~l 163 (224)
+.++.+..++|..+...|......|...+..+
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888777777666666553
No 86
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=20.58 E-value=3.2e+02 Score=20.80 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 027395 102 IKKKEELEKKLIELCERQFDAEEKMSFYQPKVED 135 (224)
Q Consensus 102 ~~~~e~L~~el~~L~~q~~~~~~~~r~~~ge~l~ 135 (224)
.+.++.+..++.....+++.+...+....|+.++
T Consensus 94 ~k~i~~les~~e~I~~~m~~LK~~LYaKFgdnIN 127 (131)
T KOG1760|consen 94 EKEIEELESELESISARMDELKKVLYAKFGDNIN 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 3445566666666667777777776666666544
No 87
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=20.57 E-value=87 Score=20.14 Aligned_cols=27 Identities=11% Similarity=0.361 Sum_probs=19.9
Q ss_pred EEeecCCCCccccccchhhhhHHhhhh
Q 027395 45 LLMFSPSGKLTKYSSSRRIEDIFLRFI 71 (224)
Q Consensus 45 liifS~~Gkl~~f~s~~s~~~VleRY~ 71 (224)
+.||-|.|++.+|+...++.++...-.
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~I~ 27 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYSIH 27 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHHHS
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHHHC
Confidence 356779999999987766777666543
No 88
>PRK11637 AmiB activator; Provisional
Probab=20.25 E-value=6e+02 Score=23.08 Aligned_cols=17 Identities=0% Similarity=0.020 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027395 150 NSAIRRVEKLNAKLLQK 166 (224)
Q Consensus 150 e~~L~~Ir~rK~~ll~~ 166 (224)
-..+..+-..-..++.+
T Consensus 158 ~~~l~~i~~~d~~~l~~ 174 (428)
T PRK11637 158 LAYFGYLNQARQETIAE 174 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555554444444
No 89
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.21 E-value=3.1e+02 Score=19.85 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 138 TIHEAVDHEKFLNSAIRRVEKLNAKLLQKES 168 (224)
Q Consensus 138 Sl~EL~~LE~~Le~~L~~Ir~rK~~ll~~qi 168 (224)
.+.++..--+.+...+..|...-+-|+.+.+
T Consensus 73 ~l~el~G~~~~l~~~l~~v~~~~~lLlE~~l 103 (106)
T PF10805_consen 73 ELAELRGELKELSARLQGVSHQLDLLLENEL 103 (106)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444445555555555444444444443
No 90
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=20.17 E-value=6.6e+02 Score=23.50 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 027395 102 IKKKEELEKKLIELCERQFDAEEKMSFY 129 (224)
Q Consensus 102 ~~~~e~L~~el~~L~~q~~~~~~~~r~~ 129 (224)
+.++..+++++..+++....+.+.+..|
T Consensus 388 q~k~~k~~kel~~~~E~n~~l~knq~vw 415 (493)
T KOG0804|consen 388 QTKLKKCQKELKEEREENKKLIKNQDVW 415 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3445555555555554444444443333
Done!