Query 027395
Match_columns 224
No_of_seqs 176 out of 1479
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 15:24:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 6.1E-40 2.1E-44 232.4 1.3 74 2-76 1-74 (90)
2 1egw_A MADS box transcription 100.0 1.2E-39 4.1E-44 225.5 0.3 72 2-74 1-72 (77)
3 1mnm_A Protein (MCM1 transcrip 100.0 7.1E-38 2.4E-42 225.4 -0.4 72 1-73 16-87 (100)
4 1hbx_A SRF, serum response fac 100.0 1.1E-37 3.6E-42 221.8 -0.7 70 1-71 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 4.7E-37 1.6E-41 222.5 -0.3 70 1-71 9-78 (103)
6 1a93_B MAX protein, coiled coi 50.7 31 0.001 19.2 4.1 24 106-129 10-33 (34)
7 2yy0_A C-MYC-binding protein; 50.2 33 0.0011 21.0 4.6 29 98-126 21-49 (53)
8 1m2d_A [2Fe-2S] ferredoxin; th 48.0 10 0.00035 26.6 2.3 34 39-73 59-92 (110)
9 3twe_A Alpha4H; unknown functi 46.3 29 0.00098 17.6 3.5 15 110-124 8-22 (27)
10 3tnu_B Keratin, type II cytosk 45.4 53 0.0018 23.7 6.0 66 97-164 37-102 (129)
11 1j1e_C Troponin I, TNI; THIN f 43.2 1.1E+02 0.0039 23.6 8.7 33 131-163 52-84 (180)
12 3hvz_A Uncharacterized protein 42.3 14 0.00049 24.5 2.2 26 44-69 7-32 (78)
13 2oa5_A Hypothetical protein BQ 42.3 89 0.003 22.1 8.0 57 104-160 9-67 (110)
14 1j1d_C Troponin I, TNI; THIN f 42.1 1E+02 0.0034 22.7 9.5 33 131-163 52-84 (133)
15 2l5g_B Putative uncharacterize 42.1 49 0.0017 19.2 4.1 27 101-127 7-33 (42)
16 3tnu_A Keratin, type I cytoske 41.7 53 0.0018 23.8 5.5 65 98-164 40-104 (131)
17 4dci_A Uncharacterized protein 41.6 1.1E+02 0.0037 22.9 8.7 66 101-166 34-99 (150)
18 2l5g_A GPS2 protein, G protein 37.6 53 0.0018 18.5 3.7 26 139-164 10-35 (38)
19 4dnd_A Syntaxin-10, SYN10; str 37.3 1.2E+02 0.004 22.0 10.3 56 102-163 73-128 (130)
20 3nrf_A APAG protein; structura 36.5 6.5 0.00022 27.9 -0.3 50 11-68 21-70 (106)
21 1j1d_B Troponin T, TNT; THIN f 35.5 48 0.0016 23.4 4.2 31 133-163 38-68 (106)
22 3ghg_A Fibrinogen alpha chain; 34.4 82 0.0028 28.6 6.4 14 58-71 46-59 (562)
23 2pnv_A Small conductance calci 33.4 74 0.0025 18.6 4.5 27 100-126 13-39 (43)
24 2v66_B Nuclear distribution pr 33.2 1.3E+02 0.0044 21.3 7.1 44 102-154 48-91 (111)
25 2dfs_A Myosin-5A; myosin-V, in 32.1 1.6E+02 0.0055 29.2 8.7 14 107-120 988-1001(1080)
26 1deq_A Fibrinogen (alpha chain 31.9 1.9E+02 0.0066 25.0 8.1 15 57-71 48-62 (390)
27 1ytz_T Troponin T; muscle, THI 31.0 51 0.0017 23.3 3.7 33 131-163 36-68 (107)
28 1nkp_B MAX protein, MYC proto- 29.9 98 0.0034 20.2 4.9 29 101-129 52-80 (83)
29 3h4p_A Proteasome subunit alph 28.8 12 0.0004 30.7 -0.0 18 40-57 11-28 (264)
30 2kmm_A Guanosine-3',5'-BIS(dip 27.9 38 0.0013 21.2 2.4 26 45-70 3-28 (73)
31 1g6u_A Domain swapped dimer; d 27.1 94 0.0032 17.8 7.0 27 136-162 16-42 (48)
32 3nzj_F Proteasome component C1 26.5 11 0.00038 31.4 -0.6 21 37-57 4-24 (288)
33 1ryp_E 20S proteasome; multica 24.7 12 0.00042 29.9 -0.6 13 44-56 3-15 (242)
34 1ryp_D 20S proteasome; multica 24.5 14 0.00048 29.6 -0.3 15 42-56 3-17 (241)
35 1zps_A PRA-CH, phosphoribosyl- 24.3 22 0.00075 26.4 0.7 37 17-53 54-100 (138)
36 2v71_A Nuclear distribution pr 24.0 2.5E+02 0.0087 21.7 7.0 24 105-128 90-113 (189)
37 2zvv_Y Cyclin-dependent kinase 23.8 22 0.00074 18.2 0.4 12 15-26 15-26 (26)
38 3ghg_A Fibrinogen alpha chain; 23.4 1.5E+02 0.0051 26.9 6.0 14 138-151 174-187 (562)
39 1ryp_B 20S proteasome; multica 23.3 15 0.00052 29.6 -0.3 17 41-57 5-21 (250)
40 1iru_G 20S proteasome; cell cy 23.3 14 0.00048 29.9 -0.5 18 39-56 5-22 (254)
41 1gmj_A ATPase inhibitor; coile 23.2 1.3E+02 0.0044 20.2 4.3 22 140-161 58-79 (84)
42 1w61_A B-cell mitogen; racemas 22.8 36 0.0012 29.9 1.9 21 40-61 113-133 (414)
43 1iru_B 20S proteasome; cell cy 22.7 16 0.00055 29.0 -0.3 16 41-56 5-20 (233)
44 3efg_A Protein SLYX homolog; x 22.5 1.1E+02 0.0038 20.1 3.9 31 98-128 30-60 (78)
45 1iru_D 20S proteasome; cell cy 22.0 17 0.00059 29.2 -0.3 15 42-56 4-18 (248)
46 1yar_A Proteasome alpha subuni 21.9 21 0.0007 28.4 0.2 17 40-56 7-23 (233)
47 1z6m_A Conserved hypothetical 21.3 39 0.0013 24.8 1.7 32 40-71 26-57 (175)
48 1kaf_A Transcription regulator 21.1 25 0.00087 24.8 0.5 52 6-73 23-75 (108)
49 2auv_A Potential NAD-reducing 21.0 42 0.0014 22.0 1.6 30 38-70 56-85 (85)
50 3cvf_A Homer-3, homer protein 20.4 1.3E+02 0.0044 20.0 3.9 13 141-153 49-61 (79)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=6.1e-40 Score=232.40 Aligned_cols=74 Identities=39% Similarity=0.700 Sum_probs=70.8
Q ss_pred CcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhhcccCC
Q 027395 2 GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICDEKQ 76 (224)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~~~~ 76 (224)
||+||+|++|||+++|||||||||+||||||+||||||||+||||||||+|++|+|+| ++|+.||+||..+...
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s-~~~~~il~rY~~~~~~ 74 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYNEP 74 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHCCSC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC-CCHHHHHHHHHhcCcc
Confidence 8999999999999999999999999999999999999999999999999999999987 5899999999988544
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=1.2e-39 Score=225.53 Aligned_cols=72 Identities=40% Similarity=0.722 Sum_probs=69.0
Q ss_pred CcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhhccc
Q 027395 2 GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICDE 74 (224)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~~ 74 (224)
||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+|++|+|+|+ +|+.||+||....
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~-~~~~il~ry~~~~ 72 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKYTEYN 72 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS-CHHHHHHHHHHC-
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCC-CHHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999999999999875 7999999998774
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=7.1e-38 Score=225.43 Aligned_cols=72 Identities=39% Similarity=0.502 Sum_probs=69.0
Q ss_pred CCcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhhcc
Q 027395 1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICD 73 (224)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~ 73 (224)
|||+||+|++|||+.+|||||+|||+||||||+||||||||+||||||||+|++|+|+|+ ++..|++||...
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sp-s~~~il~r~~G~ 87 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP-KFEPIVTQQEGR 87 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECT-TTTHHHHSHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCC-CHHHHHHHhhCC
Confidence 899999999999999999999999999999999999999999999999999999999775 899999999654
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=1.1e-37 Score=221.77 Aligned_cols=70 Identities=37% Similarity=0.507 Sum_probs=67.5
Q ss_pred CCcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhh
Q 027395 1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFI 71 (224)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~ 71 (224)
|||+||+|++|||+.+|||||+|||+||||||+||||||||+||||||||+|++|+|+| |+|+.||++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s-~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEEC-GGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecC-CCHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999977 58999999774
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=4.7e-37 Score=222.55 Aligned_cols=70 Identities=37% Similarity=0.507 Sum_probs=67.2
Q ss_pred CCcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhh
Q 027395 1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFI 71 (224)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~ 71 (224)
|||+||+|++|||+.+|||||||||+||||||+||||||||+||||||||+|++|+|+| ++|+.||+++.
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s-~~~~~vi~~~~ 78 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSET 78 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEEC-GGGGGGTSSHH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecC-ccHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999976 48999999853
No 6
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=50.71 E-value=31 Score=19.20 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 027395 106 EELEKKLIELCERQFDAEEKMSFY 129 (224)
Q Consensus 106 e~L~~el~~L~~q~~~~~~~~r~~ 129 (224)
...+++++.|+.++..++.++|.+
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhc
Confidence 345667777777777777776654
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.19 E-value=33 Score=20.98 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=15.7
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 027395 98 MLDLIKKKEELEKKLIELCERQFDAEEKM 126 (224)
Q Consensus 98 ~~~~~~~~e~L~~el~~L~~q~~~~~~~~ 126 (224)
+..+....++|+.++..|..+++.+..++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666666655555543
No 8
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=48.03 E-value=10 Score=26.60 Aligned_cols=34 Identities=9% Similarity=0.213 Sum_probs=25.0
Q ss_pred cCCceEEEeecCCCCccccccchhhhhHHhhhhcc
Q 027395 39 CDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICD 73 (224)
Q Consensus 39 Cda~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~ 73 (224)
|+---.|+|+ |+|.+|...++..+.+||+.|...
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~~ 92 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLKG 92 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHHC
Confidence 4443445555 889888888888999999997643
No 9
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=46.26 E-value=29 Score=17.61 Aligned_cols=15 Identities=33% Similarity=0.322 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 027395 110 KKLIELCERQFDAEE 124 (224)
Q Consensus 110 ~el~~L~~q~~~~~~ 124 (224)
+|+..|++.+..+.+
T Consensus 8 keledlqerlrklrk 22 (27)
T 3twe_A 8 KELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344443333333
No 10
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.38 E-value=53 Score=23.67 Aligned_cols=66 Identities=12% Similarity=0.180 Sum_probs=40.0
Q ss_pred hhhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 97 EMLDLIKKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLL 164 (224)
Q Consensus 97 ~~~~~~~~~e~L~~el~~L~~q~~~~~~~~r~~~ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~ll 164 (224)
++.+++..+..|+.++..++.+...++..+.-... -...-+.+++..-..|+..|..+|..-...+
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~--~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql 102 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ--RGELALKDARNKLAELEEALQKAKQDMARLL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34456677777777887777777777665543221 1123456666666667777777776554443
No 11
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=43.24 E-value=1.1e+02 Score=23.58 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=29.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 131 PKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKL 163 (224)
Q Consensus 131 ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~l 163 (224)
+-+++++|.++|+++-+.|...+..+-+-|..+
T Consensus 52 PLnid~Lse~~L~e~ckELh~~I~~LEeEKYDl 84 (180)
T 1j1e_C 52 PLELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (180)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 347889999999999999999999999888765
No 12
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=42.35 E-value=14 Score=24.48 Aligned_cols=26 Identities=15% Similarity=0.399 Sum_probs=20.6
Q ss_pred EEEeecCCCCccccccchhhhhHHhh
Q 027395 44 GLLMFSPSGKLTKYSSSRRIEDIFLR 69 (224)
Q Consensus 44 aliifS~~Gkl~~f~s~~s~~~VleR 69 (224)
-+.||.|.|.++++|....+.+++.+
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~~ 32 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAYA 32 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHHH
Confidence 36899999999999877667776644
No 13
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=42.32 E-value=89 Score=22.12 Aligned_cols=57 Identities=16% Similarity=0.026 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 027395 104 KKEELEKKLIELCERQFDAEEKMSFYQP--KVEDITTIHEAVDHEKFLNSAIRRVEKLN 160 (224)
Q Consensus 104 ~~e~L~~el~~L~~q~~~~~~~~r~~~g--e~l~~lSl~EL~~LE~~Le~~L~~Ir~rK 160 (224)
.+|+|.+++.+|+-++..+.++++.-.+ .+-..||..+=+.+-.+...+|...-.+|
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~K 67 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK 67 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888887764211 22345788887777666666665555554
No 14
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=42.12 E-value=1e+02 Score=22.65 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=29.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 131 PKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKL 163 (224)
Q Consensus 131 ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~l 163 (224)
+-+++++|.++|+++-+.|...+..+.+-|..+
T Consensus 52 pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDl 84 (133)
T 1j1d_C 52 PLELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (133)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 346889999999999999999999999998765
No 15
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.09 E-value=49 Score=19.25 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=15.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 027395 101 LIKKKEELEKKLIELCERQFDAEEKMS 127 (224)
Q Consensus 101 ~~~~~e~L~~el~~L~~q~~~~~~~~r 127 (224)
+-++++....|+.+-++++..++++++
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666666666666665543
No 16
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.68 E-value=53 Score=23.76 Aligned_cols=65 Identities=8% Similarity=0.018 Sum_probs=39.0
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 98 MLDLIKKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLL 164 (224)
Q Consensus 98 ~~~~~~~~e~L~~el~~L~~q~~~~~~~~r~~~ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~ll 164 (224)
+.+++..+..|+.++..++.+...++..+.-... -...-+.+++..-..|+..|..+|..-...+
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~--~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql 104 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKG--RYCMQLAQIQEMIGSVEEQLAQLRCEMEQQN 104 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777887887777777666665433221 1122445666666667777777776554443
No 17
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=41.57 E-value=1.1e+02 Score=22.92 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=38.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 101 LIKKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLLQK 166 (224)
Q Consensus 101 ~~~~~e~L~~el~~L~~q~~~~~~~~r~~~ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~ll~~ 166 (224)
+...+..+..++..|.-+...+...+..-...+++.--...+..+..+++.-..+...+|++++.+
T Consensus 34 l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~q 99 (150)
T 4dci_A 34 ISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQ 99 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666655555444443322223222112346778888888888888889888765
No 18
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=37.61 E-value=53 Score=18.54 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 139 IHEAVDHEKFLNSAIRRVEKLNAKLL 164 (224)
Q Consensus 139 l~EL~~LE~~Le~~L~~Ir~rK~~ll 164 (224)
++|...=-..|+..|...+..|.+|+
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444445555555544
No 19
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=37.25 E-value=1.2e+02 Score=22.04 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 102 IKKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKL 163 (224)
Q Consensus 102 ~~~~e~L~~el~~L~~q~~~~~~~~r~~~ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~l 163 (224)
...++.+...+..|.+-+..+++.-..+ .++..||..-...+...-..|..-|.+|
T Consensus 73 ~~~l~sie~dLeDLe~sI~ivE~np~kF------~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 73 RNGLRSIEWDLEDLEETIGIVEANPGKF------KLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHhc------CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555555443333 3677899998888888888888777664
No 20
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=36.53 E-value=6.5 Score=27.88 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=37.5
Q ss_pred ecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHh
Q 027395 11 IDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFL 68 (224)
Q Consensus 11 Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~Vle 68 (224)
|+++.....||--.-..|.++.-+|+.+| ++.|+|.|+=|-.- .++..|.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~ld---TVde~L~ 70 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRLD---TVDEELT 70 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEEE---EECGGGG
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEec---ccchhhh
Confidence 45566677788888889999999999665 89999999877663 2444444
No 21
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=35.46 E-value=48 Score=23.38 Aligned_cols=31 Identities=19% Similarity=0.075 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 133 VEDITTIHEAVDHEKFLNSAIRRVEKLNAKL 163 (224)
Q Consensus 133 ~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~l 163 (224)
+++++|.++|+++-+.|...+..+.+-|..+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDl 68 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDL 68 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 5788999999999999999999999998775
No 22
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.42 E-value=82 Score=28.57 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=7.2
Q ss_pred ccchhhhhHHhhhh
Q 027395 58 SSSRRIEDIFLRFI 71 (224)
Q Consensus 58 ~s~~s~~~VleRY~ 71 (224)
||.+.|+.+|++..
T Consensus 46 PSGCrLQglLdkqE 59 (562)
T 3ghg_A 46 PSGCRMKGLIDEVN 59 (562)
T ss_dssp ECHHHHHHHHHHHH
T ss_pred CcccchhhhHHhhc
Confidence 34445555555553
No 23
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=33.36 E-value=74 Score=18.58 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=19.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 027395 100 DLIKKKEELEKKLIELCERQFDAEEKM 126 (224)
Q Consensus 100 ~~~~~~e~L~~el~~L~~q~~~~~~~~ 126 (224)
+++..-+.+.+.+..|+.+++.+...+
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777788888887777776554
No 24
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=33.20 E-value=1.3e+02 Score=21.32 Aligned_cols=44 Identities=36% Similarity=0.278 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHH
Q 027395 102 IKKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIR 154 (224)
Q Consensus 102 ~~~~e~L~~el~~L~~q~~~~~~~~r~~~ge~l~~lSl~EL~~LE~~Le~~L~ 154 (224)
...-+.+...++.|...++.++...|. +..-|.++|..++.++.
T Consensus 48 r~~~~~l~~~iReLEq~NDDLER~~R~---------t~~SLeD~E~k~n~aiE 91 (111)
T 2v66_B 48 RAIKEQLHKYVRELEQANDDLERAKRA---------TIVSLEDFEQRLNQAIE 91 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHH---------HHhhHHHHHHHHHHHHH
Confidence 333445555666666666666665554 33455556666666654
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=32.13 E-value=1.6e+02 Score=29.15 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 027395 107 ELEKKLIELCERQF 120 (224)
Q Consensus 107 ~L~~el~~L~~q~~ 120 (224)
.|++++..++++++
T Consensus 988 ~L~~e~~~l~~~~~ 1001 (1080)
T 2dfs_A 988 SLQEEIAKLRKELH 1001 (1080)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 26
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=31.92 E-value=1.9e+02 Score=25.03 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=9.0
Q ss_pred cccchhhhhHHhhhh
Q 027395 57 YSSSRRIEDIFLRFI 71 (224)
Q Consensus 57 f~s~~s~~~VleRY~ 71 (224)
+||-+.|+.+|++..
T Consensus 48 CPsGCrLqg~Ldk~e 62 (390)
T 1deq_A 48 CPSGCRMKGLIDEVD 62 (390)
T ss_pred CCccchHHHHHHHhh
Confidence 455556666666664
No 27
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=30.97 E-value=51 Score=23.28 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=29.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 131 PKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKL 163 (224)
Q Consensus 131 ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~l 163 (224)
+-+++++|.++|+++-+.|...+..+.+-|..+
T Consensus 36 pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDl 68 (107)
T 1ytz_T 36 PLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDF 68 (107)
T ss_dssp CCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 346888999999999999999999999998775
No 28
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=29.92 E-value=98 Score=20.25 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 027395 101 LIKKKEELEKKLIELCERQFDAEEKMSFY 129 (224)
Q Consensus 101 ~~~~~e~L~~el~~L~~q~~~~~~~~r~~ 129 (224)
+....+.+..++..|+.++..++.++..+
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556666666777666666665443
No 29
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=28.76 E-value=12 Score=30.74 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=11.5
Q ss_pred CCceEEEeecCCCCcccc
Q 027395 40 DTDVGLLMFSPSGKLTKY 57 (224)
Q Consensus 40 da~ValiifS~~Gkl~~f 57 (224)
+-|-++-+|||.|++|.-
T Consensus 11 ~yd~~~t~fSp~Grl~Qv 28 (264)
T 3h4p_A 11 AYDRAITVFSPEGRLYQV 28 (264)
T ss_dssp -----CCCCCSSSSCHHH
T ss_pred ccCCCcceECCCCeeHHH
Confidence 446778899999999863
No 30
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=27.91 E-value=38 Score=21.22 Aligned_cols=26 Identities=15% Similarity=0.483 Sum_probs=21.0
Q ss_pred EEeecCCCCccccccchhhhhHHhhh
Q 027395 45 LLMFSPSGKLTKYSSSRRIEDIFLRF 70 (224)
Q Consensus 45 liifS~~Gkl~~f~s~~s~~~VleRY 70 (224)
+.|+-|+|+.++|+....+.+++..+
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSL 28 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHH
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHH
Confidence 46778899999998766788888776
No 31
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=27.10 E-value=94 Score=17.79 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395 136 ITTIHEAVDHEKFLNSAIRRVEKLNAK 162 (224)
Q Consensus 136 ~lSl~EL~~LE~~Le~~L~~Ir~rK~~ 162 (224)
+.|.+||-.||..|+..-.++-..|.+
T Consensus 16 gfspeelaaleselqalekklaalksk 42 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKKLAALKSK 42 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899888888776644444444433
No 32
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=26.54 E-value=11 Score=31.42 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=16.2
Q ss_pred hccCCceEEEeecCCCCcccc
Q 027395 37 VLCDTDVGLLMFSPSGKLTKY 57 (224)
Q Consensus 37 vLCda~ValiifS~~Gkl~~f 57 (224)
+-.+-|-++-+|||.|++|..
T Consensus 4 ~~~~yd~~~t~fSP~Grl~Qv 24 (288)
T 3nzj_F 4 IGTGYDLSNSVFSPDGRNFQV 24 (288)
T ss_dssp -CCCTTSSTTCCCTTSCCHHH
T ss_pred CcCCccCCcccCCCCCchHHH
Confidence 445667788899999999874
No 33
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=24.67 E-value=12 Score=29.90 Aligned_cols=13 Identities=46% Similarity=0.904 Sum_probs=10.9
Q ss_pred EEEeecCCCCccc
Q 027395 44 GLLMFSPSGKLTK 56 (224)
Q Consensus 44 aliifS~~Gkl~~ 56 (224)
++-+|||.|++|.
T Consensus 3 ~~t~fsp~Grl~Q 15 (242)
T 1ryp_E 3 GVSTFSPEGRLFQ 15 (242)
T ss_dssp CTTCBCTTSCBHH
T ss_pred CCceECCCCcChH
Confidence 4568999999986
No 34
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=24.46 E-value=14 Score=29.60 Aligned_cols=15 Identities=40% Similarity=0.760 Sum_probs=12.3
Q ss_pred ceEEEeecCCCCccc
Q 027395 42 DVGLLMFSPSGKLTK 56 (224)
Q Consensus 42 ~ValiifS~~Gkl~~ 56 (224)
|-++-+|||.|++|.
T Consensus 3 d~~~t~fsp~Grl~Q 17 (241)
T 1ryp_D 3 DRALSIFSPDGHIFQ 17 (241)
T ss_dssp CCCCSCCBTTTBCHH
T ss_pred CCCceeECCCCcchH
Confidence 456779999999986
No 35
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=24.26 E-value=22 Score=26.38 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=28.2
Q ss_pred ccce-ecccccchhhh---------hhhhhhccCCceEEEeecCCCC
Q 027395 17 LQVT-YTKRRDGIVKK---------AKELSVLCDTDVGLLMFSPSGK 53 (224)
Q Consensus 17 RqvT-FsKRr~GL~KK---------A~ELsvLCda~ValiifS~~Gk 53 (224)
..+| ||+=|..|..| ..++.+-||.|.-++..-+.|-
T Consensus 54 g~~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~LL~~V~q~G~ 100 (138)
T 1zps_A 54 GTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQEGG 100 (138)
T ss_dssp SBCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEEEESSC
T ss_pred CcEEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEEEEEEEecCC
Confidence 3445 56667766555 5699999999999999988873
No 36
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=23.96 E-value=2.5e+02 Score=21.72 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 027395 105 KEELEKKLIELCERQFDAEEKMSF 128 (224)
Q Consensus 105 ~e~L~~el~~L~~q~~~~~~~~r~ 128 (224)
+..|+.++..++...+.+...+|.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ire 113 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRE 113 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444443
No 37
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=23.82 E-value=22 Score=18.20 Aligned_cols=12 Identities=0% Similarity=0.177 Sum_probs=7.8
Q ss_pred CCccceeccccc
Q 027395 15 PALQVTYTKRRD 26 (224)
Q Consensus 15 ~~RqvTFsKRr~ 26 (224)
+.|.+-|+||++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 456777777763
No 38
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.44 E-value=1.5e+02 Score=26.92 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHH
Q 027395 138 TIHEAVDHEKFLNS 151 (224)
Q Consensus 138 Sl~EL~~LE~~Le~ 151 (224)
.++....+++||+.
T Consensus 174 d~~sY~~~QKQLeQ 187 (562)
T 3ghg_A 174 DLKDYEDQQKQLEQ 187 (562)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 45555566666655
No 39
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=23.34 E-value=15 Score=29.57 Aligned_cols=17 Identities=47% Similarity=0.661 Sum_probs=13.5
Q ss_pred CceEEEeecCCCCcccc
Q 027395 41 TDVGLLMFSPSGKLTKY 57 (224)
Q Consensus 41 a~ValiifS~~Gkl~~f 57 (224)
-|-++-+|||.|++|.-
T Consensus 5 yd~~~t~fsp~Grl~Qv 21 (250)
T 1ryp_B 5 YSFSLTTFSPSGKLGQI 21 (250)
T ss_dssp CCSBSSCBCTTSCBHHH
T ss_pred ccCCceeECCCCccHHH
Confidence 35677899999999863
No 40
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=23.32 E-value=14 Score=29.92 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=14.4
Q ss_pred cCCceEEEeecCCCCccc
Q 027395 39 CDTDVGLLMFSPSGKLTK 56 (224)
Q Consensus 39 Cda~ValiifS~~Gkl~~ 56 (224)
.+=|-++-+|||.|+||.
T Consensus 5 ~~yd~~~t~fsp~Grl~Q 22 (254)
T 1iru_G 5 TGYDLSASTFSPDGRVFQ 22 (254)
T ss_dssp SSTTSCTTCCCTTSCCHH
T ss_pred cccCCCCccCCcCCccHH
Confidence 345667789999999986
No 41
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=23.17 E-value=1.3e+02 Score=20.25 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027395 140 HEAVDHEKFLNSAIRRVEKLNA 161 (224)
Q Consensus 140 ~EL~~LE~~Le~~L~~Ir~rK~ 161 (224)
++|..|+..++..-.+|...|.
T Consensus 58 ~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 58 KEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5666666666666666665554
No 42
>1w61_A B-cell mitogen; racemase, racemase pyridoxal phosphate-independent, stereo inversion, acid/base catalysis, homodimer, alpha/beta domains; 2.1A {Trypanosoma cruzi} PDB: 1w62_A
Probab=22.76 E-value=36 Score=29.88 Aligned_cols=21 Identities=19% Similarity=0.514 Sum_probs=18.8
Q ss_pred CCceEEEeecCCCCccccccch
Q 027395 40 DTDVGLLMFSPSGKLTKYSSSR 61 (224)
Q Consensus 40 da~ValiifS~~Gkl~~f~s~~ 61 (224)
+||+.+++|.|+|.+ .||+|+
T Consensus 113 ~AD~~vRiFnpdGe~-~mCGHg 133 (414)
T 1w61_A 113 GADLGIVFMDTGGYL-NMCGHN 133 (414)
T ss_dssp TCSEEEEEEESSCCC-SCCHHH
T ss_pred CCCEEEEEECCCCch-hcCcCc
Confidence 589999999999976 899986
No 43
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=22.70 E-value=16 Score=29.01 Aligned_cols=16 Identities=50% Similarity=0.740 Sum_probs=13.0
Q ss_pred CceEEEeecCCCCccc
Q 027395 41 TDVGLLMFSPSGKLTK 56 (224)
Q Consensus 41 a~ValiifS~~Gkl~~ 56 (224)
=|-++-+|||.|++|.
T Consensus 5 yd~~~t~fsp~Grl~Q 20 (233)
T 1iru_B 5 YSFSLTTFSPSGKLVQ 20 (233)
T ss_dssp CCSBSCCCCTTSCCHH
T ss_pred ccCCceeECCCCeEeh
Confidence 3556789999999986
No 44
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=22.45 E-value=1.1e+02 Score=20.10 Aligned_cols=31 Identities=10% Similarity=-0.057 Sum_probs=16.3
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 027395 98 MLDLIKKKEELEKKLIELCERQFDAEEKMSF 128 (224)
Q Consensus 98 ~~~~~~~~e~L~~el~~L~~q~~~~~~~~r~ 128 (224)
+.++|..+-..++++..|+.++..+..+++.
T Consensus 30 IeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 30 LTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555556666666666655555443
No 45
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=22.00 E-value=17 Score=29.24 Aligned_cols=15 Identities=40% Similarity=0.758 Sum_probs=12.2
Q ss_pred ceEEEeecCCCCccc
Q 027395 42 DVGLLMFSPSGKLTK 56 (224)
Q Consensus 42 ~ValiifS~~Gkl~~ 56 (224)
|-++-+|||.|++|.
T Consensus 4 d~~~t~fsp~Grl~Q 18 (248)
T 1iru_D 4 DRAITVFSPDGHLFQ 18 (248)
T ss_dssp CCCCSCCCTTSCCHH
T ss_pred cCCCceECCCCcchH
Confidence 445679999999986
No 46
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=21.94 E-value=21 Score=28.38 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=10.1
Q ss_pred CCceEEEeecCCCCccc
Q 027395 40 DTDVGLLMFSPSGKLTK 56 (224)
Q Consensus 40 da~ValiifS~~Gkl~~ 56 (224)
+=|-++-+|||.|++|.
T Consensus 7 ~yd~~~t~fsp~Grl~Q 23 (233)
T 1yar_A 7 AYSRAITVFSPDGRLFQ 23 (233)
T ss_dssp ------CCCCTTSCCHH
T ss_pred cCCCCCceECcCCeeHH
Confidence 34667789999999986
No 47
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=21.28 E-value=39 Score=24.82 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=27.0
Q ss_pred CCceEEEeecCCCCccccccchhhhhHHhhhh
Q 027395 40 DTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFI 71 (224)
Q Consensus 40 da~ValiifS~~Gkl~~f~s~~s~~~VleRY~ 71 (224)
++.|-|++|+.-.-||.+-..+.+..++++|.
T Consensus 26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~ 57 (175)
T 1z6m_A 26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSV 57 (175)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCcchHHHHHHHHHHHHHHh
Confidence 68899999999888888866777888999883
No 48
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=21.06 E-value=25 Score=24.85 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=37.4
Q ss_pred ceeEEe-cCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhhcc
Q 027395 6 LLMQKI-DNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICD 73 (224)
Q Consensus 6 i~ik~I-en~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~ 73 (224)
+++|-+ +|.++=.|+|.||-.|+-+ +=....|.+-.| +..-.+.+++.|.+.
T Consensus 23 ie~K~~~~~RSN~~i~f~KRt~GiRq---------------fEi~n~G~fRI~-gYk~se~~~~~f~sl 75 (108)
T 1kaf_A 23 FVLKKVEIYRSNYLAILEKRTNGIRN---------------FEINNNGNMRIF-GYKMMEHHIQKFTDI 75 (108)
T ss_dssp CCEEEEEEETTEEEEEEEEEETTEEE---------------EEECTTSEEEEE-EESCCHHHHHHHHTT
T ss_pred ceeeeeEeeccceEEeeecccCceeE---------------EEEecCCcEEEE-EecCCHHHHHHHHhc
Confidence 666666 7888899999999999643 445667765555 233358888988776
No 49
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=21.00 E-value=42 Score=22.00 Aligned_cols=30 Identities=10% Similarity=0.182 Sum_probs=20.9
Q ss_pred ccCCceEEEeecCCCCccccccchhhhhHHhhh
Q 027395 38 LCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRF 70 (224)
Q Consensus 38 LCda~ValiifS~~Gkl~~f~s~~s~~~VleRY 70 (224)
.|+.--.++|. |.+|...++..+.+||+.|
T Consensus 56 ~C~~~P~v~V~---~~~y~~vt~e~v~~il~~~ 85 (85)
T 2auv_A 56 GCALAPIVMVG---EKVYGNVTPGQVKKILAEY 85 (85)
T ss_dssp SCTTSCCCEEG---GGCCCCSSSSHHHHHHHHC
T ss_pred cCCCCCEEEEC---CEEECCCCHHHHHHHHHhC
Confidence 45544445553 7788888888899998875
No 50
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=20.37 E-value=1.3e+02 Score=20.00 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 027395 141 EAVDHEKFLNSAI 153 (224)
Q Consensus 141 EL~~LE~~Le~~L 153 (224)
||..+-..|+-.+
T Consensus 49 Elk~l~e~Ld~KI 61 (79)
T 3cvf_A 49 EVGRAAQLLDVSL 61 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHH
Confidence 3333333333333
Done!