BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027399
         (224 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
            Chicken Gizzard Smooth Muscle Myosin With Regulatory
            Light Chain In The Dephosphorylated State. Only C Alphas
            Provided For Regulatory Light Chain. Only Backbone Atoms
            Provided For S2 Fragment.
 pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
            Chicken Gizzard Smooth Muscle Myosin With Regulatory
            Light Chain In The Dephosphorylated State. Only C Alphas
            Provided For Regulatory Light Chain. Only Backbone Atoms
            Provided For S2 Fragment
          Length = 1184

 Score = 28.9 bits (63), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 9/58 (15%)

Query: 90   LQHQVVNLQAQLASLKE---------QAAQSILNGSVTTNPNHEKYYGKLPSHPQDVQ 138
            L  Q+  LQAQ+A LK          QAA + L    +   N  K   +L SH  D+Q
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129


>pdb|2B78|A Chain A, A Putative Sam-Dependent Methyltransferase From
           Streptococcus Mutans
 pdb|3LDF|A Chain A, Crystal Structure Of Smu.776, A Putative Methyltransferase
           Complexed With Sah
          Length = 385

 Score = 27.3 bits (59), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 126 YYGKLPSHPQDVQSWFHHQEDSDMERLFSSNLHNQGAATMPYCTDQNGFMNPNSLGNSYE 185
           Y+ KL    +D +  F H + +   RLF+ +  + G  T+    D   F   NS      
Sbjct: 73  YFIKLFQWSKDKRKNFAHSKLTTAYRLFNQDGDSFGGVTIDCYGDFVLFSWYNSFVYQIR 132

Query: 186 NSAIASFGEA-SHSMGTFEQWSFQDSDDLQSVAFG 219
           +  +A+F +   + +G +E+  F+  D++ +  +G
Sbjct: 133 DEIVAAFRQVYPNFLGAYEKIRFKGIDNVSAHLYG 167


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.129    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,820,807
Number of Sequences: 62578
Number of extensions: 257994
Number of successful extensions: 595
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 8
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)