Query 027399
Match_columns 224
No_of_seqs 127 out of 293
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 09:22:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 1.1E-49 2.4E-54 311.8 9.3 101 7-108 1-101 (101)
2 COG3416 Uncharacterized protei 81.0 4.5 9.7E-05 36.8 6.0 63 48-110 11-73 (233)
3 PF09849 DUF2076: Uncharacteri 75.7 7.9 0.00017 35.2 6.1 62 49-110 12-73 (247)
4 PF05308 Mito_fiss_reg: Mitoch 60.3 14 0.0003 33.7 4.3 19 92-110 122-140 (253)
5 PF06698 DUF1192: Protein of u 56.7 21 0.00046 26.2 4.0 25 87-111 23-47 (59)
6 COG5509 Uncharacterized small 54.6 10 0.00022 28.5 2.1 27 87-113 27-53 (65)
7 PRK04406 hypothetical protein; 53.1 46 0.00099 25.1 5.4 26 85-110 32-57 (75)
8 PRK02119 hypothetical protein; 51.6 52 0.0011 24.6 5.5 26 85-110 30-55 (73)
9 PRK02793 phi X174 lysis protei 51.6 53 0.0011 24.4 5.5 26 85-110 29-54 (72)
10 PRK10265 chaperone-modulator p 51.5 28 0.0006 27.1 4.2 29 82-110 68-96 (101)
11 PF11333 DUF3135: Protein of u 51.5 27 0.00058 26.9 4.0 65 33-101 16-82 (83)
12 PF07106 TBPIP: Tat binding pr 50.9 15 0.00033 30.4 2.8 76 35-110 21-104 (169)
13 PF12097 DUF3573: Protein of u 50.8 18 0.00038 35.2 3.5 23 85-107 42-64 (383)
14 PLN02523 galacturonosyltransfe 49.1 48 0.0011 33.8 6.4 55 50-109 144-200 (559)
15 PF13334 DUF4094: Domain of un 47.8 18 0.00039 28.4 2.6 23 84-106 72-94 (95)
16 PRK00295 hypothetical protein; 47.3 74 0.0016 23.4 5.7 26 85-110 26-51 (68)
17 PRK04325 hypothetical protein; 45.5 90 0.0019 23.3 6.0 26 85-110 30-55 (74)
18 PF13591 MerR_2: MerR HTH fami 43.5 29 0.00063 26.0 3.1 24 83-106 61-84 (84)
19 cd04766 HTH_HspR Helix-Turn-He 42.9 46 0.00099 24.8 4.1 25 85-109 65-89 (91)
20 PF09006 Surfac_D-trimer: Lung 42.8 55 0.0012 23.2 4.1 24 87-110 1-24 (46)
21 PRK00736 hypothetical protein; 41.8 96 0.0021 22.8 5.5 26 85-110 26-51 (68)
22 PRK00846 hypothetical protein; 40.1 1E+02 0.0022 23.7 5.6 27 84-110 33-59 (77)
23 PF11336 DUF3138: Protein of u 39.7 55 0.0012 32.9 5.1 28 83-110 23-50 (514)
24 PF06305 DUF1049: Protein of u 39.1 69 0.0015 22.3 4.3 25 86-110 42-66 (68)
25 PRK10803 tol-pal system protei 38.7 44 0.00095 30.1 4.0 26 85-110 54-79 (263)
26 PF14282 FlxA: FlxA-like prote 37.5 57 0.0012 25.7 4.0 25 86-110 52-76 (106)
27 PF08158 NUC130_3NT: NUC130/3N 35.6 23 0.00051 25.1 1.4 37 24-70 5-45 (52)
28 PF04706 Dickkopf_N: Dickkopf 34.8 23 0.0005 25.2 1.3 17 5-21 20-36 (52)
29 PF04977 DivIC: Septum formati 33.1 84 0.0018 22.1 4.0 22 89-110 28-49 (80)
30 TIGR03021 pilP_fam type IV pil 32.8 2E+02 0.0042 23.4 6.5 27 84-110 4-30 (119)
31 PF07334 IFP_35_N: Interferon- 30.2 1.3E+02 0.0029 23.2 4.8 52 87-139 2-54 (76)
32 PLN02742 Probable galacturonos 30.1 1.2E+02 0.0027 30.8 5.9 47 59-109 132-178 (534)
33 PF04102 SlyX: SlyX; InterPro 29.8 73 0.0016 23.2 3.3 25 86-110 26-50 (69)
34 PF04728 LPP: Lipoprotein leuc 29.8 1.2E+02 0.0026 22.2 4.3 21 87-107 12-32 (56)
35 PRK00888 ftsB cell division pr 28.7 92 0.002 24.6 3.9 21 86-106 28-48 (105)
36 PF04977 DivIC: Septum formati 28.4 1.4E+02 0.003 20.9 4.5 25 86-110 18-42 (80)
37 KOG1655 Protein involved in va 28.3 1.4E+02 0.003 27.2 5.3 92 41-152 2-97 (218)
38 PF11853 DUF3373: Protein of u 27.5 1E+02 0.0022 31.0 4.7 32 77-109 17-48 (489)
39 cd01111 HTH_MerD Helix-Turn-He 27.2 1.9E+02 0.0041 22.6 5.4 28 83-110 78-105 (107)
40 PF12325 TMF_TATA_bd: TATA ele 27.1 1.2E+02 0.0026 24.8 4.4 29 82-110 13-41 (120)
41 PF15300 INT_SG_DDX_CT_C: INTS 25.6 61 0.0013 24.2 2.2 27 47-73 23-51 (65)
42 KOG4552 Vitamin-D-receptor int 24.8 2E+02 0.0043 26.7 5.7 46 49-102 59-105 (272)
43 KOG0242 Kinesin-like protein [ 24.3 1.2E+02 0.0027 31.3 4.8 63 44-106 283-366 (675)
44 TIGR02209 ftsL_broad cell divi 24.0 1.5E+02 0.0032 21.5 4.0 30 85-115 31-60 (85)
45 PF04728 LPP: Lipoprotein leuc 23.6 1.8E+02 0.0039 21.3 4.3 26 85-110 17-42 (56)
46 KOG4098 Molecular chaperone Pr 22.7 1.5E+02 0.0032 25.4 4.3 61 47-107 49-115 (140)
47 PF14282 FlxA: FlxA-like prote 21.9 1.1E+02 0.0023 24.1 3.1 22 84-105 18-39 (106)
48 PF03242 LEA_3: Late embryogen 21.8 39 0.00085 26.7 0.6 20 69-88 58-77 (93)
49 PF08657 DASH_Spc34: DASH comp 20.4 1.7E+02 0.0037 26.8 4.5 34 77-110 172-205 (259)
50 PF07820 TraC: TraC-like prote 20.1 1.8E+02 0.0038 23.3 4.0 27 87-113 4-30 (92)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=1.1e-49 Score=311.76 Aligned_cols=101 Identities=52% Similarity=0.935 Sum_probs=99.0
Q ss_pred CChhhhhhhcCCCCCCccCcCCCCccCcchHHHHHHHhchhhHHHHHhcCCCcCHHHHHHHHHHHHhhcccCCCCCcHHH
Q 027399 7 PCGACKFLRRKCVKGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSH 86 (224)
Q Consensus 7 ~CAACK~lRRkC~~dCifAPYFPadq~~~~F~~vHKVFG~SNV~KmLq~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvGi 86 (224)
+|||||||||||+++|+||||||+++ +++|++||||||++||+|||+++|+++|.+||+||+|||++|.+||||||+|+
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~-~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~ 79 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQ-PQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGI 79 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhH-HHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHH
Confidence 79999999999999999999999998 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027399 87 IFALQHQVVNLQAQLASLKEQA 108 (224)
Q Consensus 87 I~~Lq~Qi~~lqaELa~~k~ql 108 (224)
|+.|+|||+++++||+.+++||
T Consensus 80 i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 80 ISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999875
No 2
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.97 E-value=4.5 Score=36.81 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=55.0
Q ss_pred hHHHHHhcCCCcCHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 48 NVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 48 NV~KmLq~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
|+..-|+......|...+..||-||-++.-|--|=-+-.|..+++-|..++.+|+.++.+++.
T Consensus 11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~ 73 (233)
T COG3416 11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAI 73 (233)
T ss_pred HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677778899999999999999999999999999999999999999999999888775
No 3
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=75.68 E-value=7.9 Score=35.22 Aligned_cols=62 Identities=21% Similarity=0.203 Sum_probs=55.5
Q ss_pred HHHHHhcCCCcCHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 49 VSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 49 V~KmLq~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
+..-|+.++...|.--++.+|-|+-.|.-|-+|=-+-.|..++.-|++++++|+.|+.||++
T Consensus 12 lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 12 LFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456777777899999999999999999999999999999999999999999999999844
No 4
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=60.29 E-value=14 Score=33.73 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027399 92 HQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 92 ~Qi~~lqaELa~~k~qla~ 110 (224)
++|..||.||+.+|+|||.
T Consensus 122 qKIsALEdELs~LRaQIA~ 140 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAK 140 (253)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777776
No 5
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=56.73 E-value=21 Score=26.17 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 87 IFALQHQVVNLQAQLASLKEQAAQS 111 (224)
Q Consensus 87 I~~Lq~Qi~~lqaELa~~k~qla~~ 111 (224)
|-.|+..|..|++|++.++++++..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999888763
No 6
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=54.65 E-value=10 Score=28.51 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027399 87 IFALQHQVVNLQAQLASLKEQAAQSIL 113 (224)
Q Consensus 87 I~~Lq~Qi~~lqaELa~~k~qla~~~~ 113 (224)
+-.|.+.|..||+|++.++.|++.--.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~~ 53 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKKA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456788888888888888888876333
No 7
>PRK04406 hypothetical protein; Provisional
Probab=53.14 E-value=46 Score=25.09 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 85 SHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 85 GiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
.+|...+++|..|+.+|..++.++..
T Consensus 32 ~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 32 DALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777788888888888888888865
No 8
>PRK02119 hypothetical protein; Provisional
Probab=51.62 E-value=52 Score=24.59 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 85 SHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 85 GiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
.+|..-+++|..++.+|..++.++..
T Consensus 30 ~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 30 QALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788888888888888888876
No 9
>PRK02793 phi X174 lysis protein; Provisional
Probab=51.61 E-value=53 Score=24.43 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 85 SHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 85 GiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
.+|...+.+|..++.+|..+..++..
T Consensus 29 ~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 29 VTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788888888898888888876
No 10
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=51.49 E-value=28 Score=27.11 Aligned_cols=29 Identities=10% Similarity=0.253 Sum_probs=26.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 82 GCVSHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 82 GCvGiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
-.+++|..|-.||..|++|+..+++++..
T Consensus 68 ~gialvl~LLd~i~~Lr~el~~L~~~l~~ 96 (101)
T PRK10265 68 PGIAVALTLLDEIAHLKQENRLLRQRLSR 96 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999998876
No 11
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=51.49 E-value=27 Score=26.94 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=49.0
Q ss_pred CcchHHHHHHHhchhhHHHHHhcCCCcC--HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHH
Q 027399 33 GATHFAAIHKVFGASNVSKLLAHLPVSD--RCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQL 101 (224)
Q Consensus 33 ~~~~F~~vHKVFG~SNV~KmLq~lp~~~--R~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~Qi~~lqaEL 101 (224)
.|+.|.... ..-|-.++...|++. |..++.+-|=---.|.++|+.-|+-+...+..++..++..|
T Consensus 16 dPe~fe~lr----~~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l 82 (83)
T PF11333_consen 16 DPEAFEQLR----QELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL 82 (83)
T ss_pred CHHHHHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 467887643 356677888888755 45556665555667889999999999999999998887665
No 12
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=50.90 E-value=15 Score=30.39 Aligned_cols=76 Identities=21% Similarity=0.219 Sum_probs=47.4
Q ss_pred chHHHHHHHhchhhHHHHHhcCCCcCHH---HHHHHHHHHHhhcccCCCCCc-----HHHHHHHHHHHHHHHHHHHHHHH
Q 027399 35 THFAAIHKVFGASNVSKLLAHLPVSDRC---EAAVTISYEAQARLQDPIYGC-----VSHIFALQHQVVNLQAQLASLKE 106 (224)
Q Consensus 35 ~~F~~vHKVFG~SNV~KmLq~lp~~~R~---dA~~SLvYEA~aR~rDPVyGC-----vGiI~~Lq~Qi~~lqaELa~~k~ 106 (224)
.-|.|.|.-||-..|.|.|..|-...+. ..=.+.||=++--.-+-+..- -.-|..|+.++..++.++..++.
T Consensus 21 di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~ 100 (169)
T PF07106_consen 21 DIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEA 100 (169)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999987553321 122345555443332211111 23466666777777777777766
Q ss_pred HHHH
Q 027399 107 QAAQ 110 (224)
Q Consensus 107 qla~ 110 (224)
+++.
T Consensus 101 eL~~ 104 (169)
T PF07106_consen 101 ELAS 104 (169)
T ss_pred HHHH
Confidence 7666
No 13
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=50.79 E-value=18 Score=35.18 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027399 85 SHIFALQHQVVNLQAQLASLKEQ 107 (224)
Q Consensus 85 GiI~~Lq~Qi~~lqaELa~~k~q 107 (224)
-.|..||+||.+||+||..++++
T Consensus 42 ~~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 42 QEISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35889999999999999999887
No 14
>PLN02523 galacturonosyltransferase
Probab=49.05 E-value=48 Score=33.80 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=44.5
Q ss_pred HHHHhcCCC--cCHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 50 SKLLAHLPV--SDRCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAA 109 (224)
Q Consensus 50 ~KmLq~lp~--~~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~Qi~~lqaELa~~k~qla 109 (224)
...|++||+ .+|..+|+.++++|.. +|-|..+|.+|+..+..+++++..+|.|-+
T Consensus 144 ~~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~ 200 (559)
T PLN02523 144 EDVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNGA 200 (559)
T ss_pred hHHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677764 5689999999999993 555778999999999999999998886544
No 15
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=47.84 E-value=18 Score=28.44 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027399 84 VSHIFALQHQVVNLQAQLASLKE 106 (224)
Q Consensus 84 vGiI~~Lq~Qi~~lqaELa~~k~ 106 (224)
.-.|..|...|..|+.||+.+|.
T Consensus 72 h~aIq~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 72 HEAIQSLDKTISSLEMELAAARA 94 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34577888888888888887765
No 16
>PRK00295 hypothetical protein; Provisional
Probab=47.26 E-value=74 Score=23.40 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 85 SHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 85 GiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
.+|...+++|..++.+|..+..++..
T Consensus 26 ~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 26 DVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888876
No 17
>PRK04325 hypothetical protein; Provisional
Probab=45.47 E-value=90 Score=23.32 Aligned_cols=26 Identities=31% Similarity=0.235 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 85 SHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 85 GiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
.+|..-+.+|..|+.+|..+..++..
T Consensus 30 ~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 30 ATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888888888888876
No 18
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=43.52 E-value=29 Score=25.99 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 83 CVSHIFALQHQVVNLQAQLASLKE 106 (224)
Q Consensus 83 CvGiI~~Lq~Qi~~lqaELa~~k~ 106 (224)
.+++|.+|..+|..|+.||..+|+
T Consensus 61 gi~lil~LLd~i~~L~~el~~L~~ 84 (84)
T PF13591_consen 61 GIALILDLLDRIEQLRRELRELRR 84 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 478899999999999999998863
No 19
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=42.90 E-value=46 Score=24.80 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 85 SHIFALQHQVVNLQAQLASLKEQAA 109 (224)
Q Consensus 85 GiI~~Lq~Qi~~lqaELa~~k~qla 109 (224)
..|..|..|+..+++||+.+++++.
T Consensus 65 ~~~l~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 65 KRILELEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444599999999999999988764
No 20
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=42.83 E-value=55 Score=23.24 Aligned_cols=24 Identities=42% Similarity=0.445 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 87 IFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 87 I~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
|..|.+|+..|+.+|..++.-+.+
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999888765543
No 21
>PRK00736 hypothetical protein; Provisional
Probab=41.82 E-value=96 Score=22.81 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 85 SHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 85 GiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
.+|..-+++|..|+.+|..+..++..
T Consensus 26 ~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 26 DQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888876
No 22
>PRK00846 hypothetical protein; Provisional
Probab=40.07 E-value=1e+02 Score=23.66 Aligned_cols=27 Identities=7% Similarity=-0.016 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 84 VSHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 84 vGiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
-.+|...+.+|..++.+|..++.++..
T Consensus 33 N~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 33 SEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888888888888776
No 23
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=39.66 E-value=55 Score=32.92 Aligned_cols=28 Identities=36% Similarity=0.394 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 83 CVSHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 83 CvGiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
-.-.|..|+.||..||.|+..+|.+|+.
T Consensus 23 ~a~~i~~L~~ql~aLq~~v~eL~~~laa 50 (514)
T PF11336_consen 23 TADQIKALQAQLQALQDQVNELRAKLAA 50 (514)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457899999999999999999999886
No 24
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.12 E-value=69 Score=22.27 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 86 HIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 86 iI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
..+.+++++..++.+++.++.++++
T Consensus 42 ~~~~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 42 SRLRLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466788888888888888887764
No 25
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=38.69 E-value=44 Score=30.08 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 85 SHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 85 GiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
..+..|++||..++.|+..+|.++..
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~ 79 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQE 79 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 35678999999999999999865543
No 26
>PF14282 FlxA: FlxA-like protein
Probab=37.45 E-value=57 Score=25.68 Aligned_cols=25 Identities=48% Similarity=0.558 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 86 HIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 86 iI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
.+..|+.||..|+++|+.++.+.+.
T Consensus 52 q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 52 QIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888776665
No 27
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=35.61 E-value=23 Score=25.13 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=27.8
Q ss_pred cCcCCCCccCcchHHHHHHHhchhhHHHHHhc----CCCcCHHHHHHHHHH
Q 027399 24 FAPYFCHEQGATHFAAIHKVFGASNVSKLLAH----LPVSDRCEAAVTISY 70 (224)
Q Consensus 24 fAPYFPadq~~~~F~~vHKVFG~SNV~KmLq~----lp~~~R~dA~~SLvY 70 (224)
.++|||.+ ...|. .-+..+|++ |+|+.|...+.||+-
T Consensus 5 va~cYp~~--~~~Fp--------~~L~~lL~~~~~~L~p~lR~~lv~aLiL 45 (52)
T PF08158_consen 5 VAHCYPKE--TKDFP--------QELIDLLRNHHTVLDPDLRMKLVKALIL 45 (52)
T ss_pred cccccHHH--HHHHH--------HHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 57888864 45675 356677753 899999999999985
No 28
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=34.84 E-value=23 Score=25.25 Aligned_cols=17 Identities=29% Similarity=0.809 Sum_probs=15.4
Q ss_pred CCCChhhhhhhcCCCCC
Q 027399 5 GSPCGACKFLRRKCVKG 21 (224)
Q Consensus 5 ~s~CAACK~lRRkC~~d 21 (224)
.+.|..||-+|++|..|
T Consensus 20 ~~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 20 ESKCLPCRKRRKRCTRD 36 (52)
T ss_pred CccChhhccCCCCCCCC
Confidence 37899999999999986
No 29
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.06 E-value=84 Score=22.07 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027399 89 ALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 89 ~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
.|+.++..++.+...++.++..
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 30
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=32.83 E-value=2e+02 Score=23.43 Aligned_cols=27 Identities=41% Similarity=0.389 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 84 VSHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 84 vGiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
+|-|..||.+...++++++.+|.|...
T Consensus 4 ~~eLe~iQ~et~LleAq~~~akaq~el 30 (119)
T TIGR03021 4 VGQLEALQSETALLEAQLARAKAQNEL 30 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999988877655553
No 31
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=30.16 E-value=1.3e+02 Score=23.21 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCCCCCCCCC-CCchhhhh
Q 027399 87 IFALQHQVVNLQAQLASLKEQAAQSILNGSVTTNPNHEKYYGKLP-SHPQDVQS 139 (224)
Q Consensus 87 I~~Lq~Qi~~lqaELa~~k~qla~~~~~~~~~~~~~~~~~~~~~~-~~~q~~q~ 139 (224)
|..|+.+..+|+.+|.+++++|.+.-.+-.+-.+.+ ++-..++. -.++|.++
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~diP-e~kvkFts~E~p~~d~q 54 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREFQIKEDIP-EKKVKFTSPEVPEDDQQ 54 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCc-cccCcCCCCCCCCCccc
Confidence 667888888888888888877776433433333433 23333332 24455444
No 32
>PLN02742 Probable galacturonosyltransferase
Probab=30.06 E-value=1.2e+02 Score=30.79 Aligned_cols=47 Identities=17% Similarity=0.269 Sum_probs=39.4
Q ss_pred cCHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 59 SDRCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAA 109 (224)
Q Consensus 59 ~~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~Qi~~lqaELa~~k~qla 109 (224)
.++..+|+.++++|.--. +.|..++.+|...+..++.|+...+.|-+
T Consensus 132 ~~~~~~m~~~i~~ak~~~----~d~~~~~~klr~~l~~~e~~~~~~~~q~~ 178 (534)
T PLN02742 132 EPIIRDLAALIYQAQDLH----YDSATTIMTLKAHIQALEERANAATVQST 178 (534)
T ss_pred HHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999887544 55999999999999999999998886544
No 33
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=29.77 E-value=73 Score=23.23 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 86 HIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 86 iI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
+|...+.+|..|+.+|..+..++..
T Consensus 26 ~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 26 VVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777766
No 34
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=29.76 E-value=1.2e+02 Score=22.24 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027399 87 IFALQHQVVNLQAQLASLKEQ 107 (224)
Q Consensus 87 I~~Lq~Qi~~lqaELa~~k~q 107 (224)
|..|..+|.+|..++..++..
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~ 32 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRAD 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555443
No 35
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=28.70 E-value=92 Score=24.60 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027399 86 HIFALQHQVVNLQAQLASLKE 106 (224)
Q Consensus 86 iI~~Lq~Qi~~lqaELa~~k~ 106 (224)
.+..+++++..+++|++.++.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~ 48 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKA 48 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355566666655555555543
No 36
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.41 E-value=1.4e+02 Score=20.91 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 86 HIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 86 iI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
.+..++.++..++.+++.++.+...
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~ 42 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEE 42 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777766655443
No 37
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.30 E-value=1.4e+02 Score=27.24 Aligned_cols=92 Identities=13% Similarity=0.170 Sum_probs=48.9
Q ss_pred HHHhchhhHHHHHhcCCCcCHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCC
Q 027399 41 HKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQSILNGSVTTN 120 (224)
Q Consensus 41 HKVFG~SNV~KmLq~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~Qi~~lqaELa~~k~qla~~~~~~~~~~~ 120 (224)
|||||..+- ..|+..=.++..++= .| --.+..+|..|.+||.+.|.|++..-.+|.-.+-
T Consensus 2 nRiFG~~k~-----k~p~psL~dai~~v~----~r-----------~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~ 61 (218)
T KOG1655|consen 2 NRIFGRGKP-----KEPPPSLQDAIDSVN----KR-----------SDSVEKKISKLDAELCKYKDQIKKTRPGPAQNAL 61 (218)
T ss_pred cccccCCCC-----CCCChhHHHHHHHHH----Hh-----------hhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHH
Confidence 689998862 345555555655542 22 1356778888888888888888773111110000
Q ss_pred -CCCCCCCCCCCCCchhhhhhhh---ccccCccccc
Q 027399 121 -PNHEKYYGKLPSHPQDVQSWFH---HQEDSDMERL 152 (224)
Q Consensus 121 -~~~~~~~~~~~~~~q~~q~~~~---~~~~~~~~~~ 152 (224)
-.+=++|..+-++-+..+++.+ -|++++++.+
T Consensus 62 KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e 97 (218)
T KOG1655|consen 62 KQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAE 97 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 0111334444455544443332 3666666665
No 38
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=27.47 E-value=1e+02 Score=31.05 Aligned_cols=32 Identities=31% Similarity=0.316 Sum_probs=22.8
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 77 QDPIYGCVSHIFALQHQVVNLQAQLASLKEQAA 109 (224)
Q Consensus 77 rDPVyGCvGiI~~Lq~Qi~~lqaELa~~k~qla 109 (224)
-.|.....--|..+| ||++|+.||+.+|+|+.
T Consensus 17 s~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 17 SLPAAAMADDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred ccchhhhhhhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 344444455555566 99999999999988866
No 39
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=27.21 E-value=1.9e+02 Score=22.57 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 83 CVSHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 83 CvGiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
|...+..+..+|...+++|+.++.+|..
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~ 105 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAE 105 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888889999999999999888875
No 40
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.09 E-value=1.2e+02 Score=24.80 Aligned_cols=29 Identities=38% Similarity=0.439 Sum_probs=19.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 82 GCVSHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 82 GCvGiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
..+.+|..|+.+|..++.|+..+|.+++.
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~ 41 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELAR 41 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777776665554
No 41
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=25.59 E-value=61 Score=24.18 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=23.4
Q ss_pred hhHHHHHhcC--CCcCHHHHHHHHHHHHh
Q 027399 47 SNVSKLLAHL--PVSDRCEAAVTISYEAQ 73 (224)
Q Consensus 47 SNV~KmLq~l--p~~~R~dA~~SLvYEA~ 73 (224)
+.|.++|+.+ |.+.|...+..++.||.
T Consensus 23 e~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 23 EKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 4688899988 67889999999999985
No 42
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=24.84 E-value=2e+02 Score=26.73 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=31.7
Q ss_pred HHHHHhcCCC-cCHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 027399 49 VSKLLAHLPV-SDRCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLA 102 (224)
Q Consensus 49 V~KmLq~lp~-~~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~Qi~~lqaELa 102 (224)
+.+||+-+++ .+|+.+|++|--+.+.|. ..|.+||.++...+.-|.
T Consensus 59 f~~llkla~eq~k~e~~m~~Lea~VEkrD--------~~IQqLqk~LK~aE~iLt 105 (272)
T KOG4552|consen 59 FKTLLKLAPEQQKREQLMRTLEAHVEKRD--------EVIQQLQKNLKSAEVILT 105 (272)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHH
Confidence 4556665654 458999998855555554 369999999987755444
No 43
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.31 E-value=1.2e+02 Score=31.27 Aligned_cols=63 Identities=24% Similarity=0.357 Sum_probs=50.3
Q ss_pred hchhhHHHHHhc-------------CCCc--CHHHHHHHHHHHHhhcc------cCCCCCcHHHHHHHHHHHHHHHHHHH
Q 027399 44 FGASNVSKLLAH-------------LPVS--DRCEAAVTISYEAQARL------QDPIYGCVSHIFALQHQVVNLQAQLA 102 (224)
Q Consensus 44 FG~SNV~KmLq~-------------lp~~--~R~dA~~SLvYEA~aR~------rDPVyGCvGiI~~Lq~Qi~~lqaELa 102 (224)
|--|++++|||. +.|+ .-.+..+||.|++.|+- +++|-.-.-++..++..+..++++|.
T Consensus 283 YRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~ 362 (675)
T KOG0242|consen 283 YRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELE 362 (675)
T ss_pred ccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHH
Confidence 455777888874 3443 58999999999998874 68888888889999999999999998
Q ss_pred HHHH
Q 027399 103 SLKE 106 (224)
Q Consensus 103 ~~k~ 106 (224)
.++.
T Consensus 363 ~~~~ 366 (675)
T KOG0242|consen 363 RLKK 366 (675)
T ss_pred hhcc
Confidence 8543
No 44
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=24.00 E-value=1.5e+02 Score=21.47 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 027399 85 SHIFALQHQVVNLQAQLASLKEQAAQSILNG 115 (224)
Q Consensus 85 GiI~~Lq~Qi~~lqaELa~~k~qla~~~~~~ 115 (224)
.-+..++.++.++++|-..++.++.. +.++
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~-l~~~ 60 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAE-LSRH 60 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCH
Confidence 34566667777777777777666665 4433
No 45
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=23.57 E-value=1.8e+02 Score=21.31 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 85 SHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 85 GiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
.-|.+|+..+..++.++..+|.+++.
T Consensus 17 ~kvdqLs~dv~~lr~~v~~ak~EAaR 42 (56)
T PF04728_consen 17 SKVDQLSSDVNALRADVQAAKEEAAR 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777665
No 46
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=22.71 E-value=1.5e+02 Score=25.42 Aligned_cols=61 Identities=21% Similarity=0.153 Sum_probs=42.7
Q ss_pred hhHHHHHhcCCCcCHHHHH------HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 47 SNVSKLLAHLPVSDRCEAA------VTISYEAQARLQDPIYGCVSHIFALQHQVVNLQAQLASLKEQ 107 (224)
Q Consensus 47 SNV~KmLq~lp~~~R~dA~------~SLvYEA~aR~rDPVyGCvGiI~~Lq~Qi~~lqaELa~~k~q 107 (224)
+-|++.|+.++|..|.--| ..-|=|.---+..-.-|--++|..|..|+.+...||.+.|..
T Consensus 49 ~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kElnkfk~~ 115 (140)
T KOG4098|consen 49 KLVIETLKDLDPTRKCFRMIGGVLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELNKFKKD 115 (140)
T ss_pred HHHHHHHHhcChhhHHHHHhccchhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578888888887764332 233333333344455688899999999999999999988753
No 47
>PF14282 FlxA: FlxA-like protein
Probab=21.94 E-value=1.1e+02 Score=24.11 Aligned_cols=22 Identities=45% Similarity=0.456 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027399 84 VSHIFALQHQVVNLQAQLASLK 105 (224)
Q Consensus 84 vGiI~~Lq~Qi~~lqaELa~~k 105 (224)
...|..|+.||..|+.+|..+.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~ 39 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELS 39 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777776654
No 48
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=21.81 E-value=39 Score=26.70 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=16.3
Q ss_pred HHHHhhcccCCCCCcHHHHH
Q 027399 69 SYEAQARLQDPIYGCVSHIF 88 (224)
Q Consensus 69 vYEA~aR~rDPVyGCvGiI~ 88 (224)
-.|-..|.+|||-|++-...
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 56678999999999986654
No 49
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=20.41 E-value=1.7e+02 Score=26.82 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=29.5
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027399 77 QDPIYGCVSHIFALQHQVVNLQAQLASLKEQAAQ 110 (224)
Q Consensus 77 rDPVyGCvGiI~~Lq~Qi~~lqaELa~~k~qla~ 110 (224)
.-|+.|.-..|..|.++...+..+|+.++++++.
T Consensus 172 vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~Vae 205 (259)
T PF08657_consen 172 VYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAE 205 (259)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4499999999999999999999999988877664
No 50
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=20.13 E-value=1.8e+02 Score=23.35 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027399 87 IFALQHQVVNLQAQLASLKEQAAQSIL 113 (224)
Q Consensus 87 I~~Lq~Qi~~lqaELa~~k~qla~~~~ 113 (224)
+..|..||..|+++|..+..+.+..+.
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERig 30 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIG 30 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999888766665444
Done!